BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032331
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49313|NDADB_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B
OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1
Length = 143
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/143 (88%), Positives = 136/143 (95%)
Query: 1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
MTEAMIRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI GPSAMA+FL GAF++G
Sbjct: 1 MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60
Query: 61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct: 61 MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120
Query: 121 GENVYNSGRWMPPASGELRPEVW 143
GENVYNSGRWMPPA+GELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
>sp|Q8RWA7|NDADA_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A
OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1
Length = 143
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 126/143 (88%), Positives = 135/143 (94%)
Query: 1 MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60
MTEAMIR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI GPSAMA+FLA GAF++G
Sbjct: 1 MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60
Query: 61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120
MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWKKYLEYEA+VMKDVPGWKV
Sbjct: 61 MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120
Query: 121 GENVYNSGRWMPPASGELRPEVW 143
GENVYNSGRWMPPA+GELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
>sp|Q0MQ90|NDUAD_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR L+ E +
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+PP GEL
Sbjct: 66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>sp|Q9P0J0|NDUAD_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Homo sapiens GN=NDUFA13 PE=1 SV=3
Length = 144
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR L+ E +
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+PP GEL
Sbjct: 66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>sp|Q0MQ89|NDUAD_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR L+ E +
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+PP GEL
Sbjct: 66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
>sp|Q95KV7|NDUAD_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Bos taurus GN=NDUFA13 PE=1 SV=3
Length = 144
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PP GG+ P+ Y R +P +G S ++F GA +G + + K N+ RR L+ E +
Sbjct: 6 VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A++P+LQAE+D R ++ ++ LE EA VMKDVPGWKVGE+V+++ RW+ P GEL
Sbjct: 66 EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124
>sp|Q4R6H1|NDUAD_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1
Length = 163
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%)
Query: 13 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRR 72
AS++ V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR
Sbjct: 18 ASMEMPKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLVYGHWSIMKWNRERR 77
Query: 73 ALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP 132
L+ E + AR A++P+ QAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+P
Sbjct: 78 RLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVP 137
Query: 133 PASGEL 138
P GEL
Sbjct: 138 PLIGEL 143
>sp|Q0MQ88|NDUAD_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3
Length = 144
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PPPGG+ P+ Y R +P +G S ++ G YG + + K N+ RR L+ E +
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDF 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A+LP+LQAE D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+ P GEL
Sbjct: 66 EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124
>sp|Q9ERS2|NDUAD_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Mus musculus GN=Ndufa13 PE=1 SV=3
Length = 144
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 20 VLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79
V QD PPPGG+ P+ Y R +P +G S ++F GA +G +++ + N+ RR L E
Sbjct: 6 VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDL 65
Query: 80 AARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 138
AR A++P+ QAE+D R ++ ++ LE EA +MKDVP WKVGE+V+++ RW+PP GE+
Sbjct: 66 EARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124
>sp|Q86IZ2|NDUAD_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
OS=Dictyostelium discoideum GN=ndufa13 PE=3 SV=1
Length = 113
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 LQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYA 80
+QD PP GGF ++YAR + P A +F F + G Y + +K+ R +EE+
Sbjct: 9 VQDLPPAGGFPKLKYARTSTSPIPGAY-IFAGVFSIMAVGTY-IFFSDKVERNAREEEEK 66
Query: 81 ARRA-ILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGE 137
R + ILP+LQAE D F+ +NVY + RWMPP +G+
Sbjct: 67 RRLSMILPILQAENDINFLAS-------------------PHQNVYFT-RWMPPQTGK 104
>sp|Q46J57|ATPA_PROMT ATP synthase subunit alpha OS=Prochlorococcus marinus (strain
NATL2A) GN=atpA PE=3 SV=1
Length = 504
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRALKEEK-- 78
GG A + ++I +A F LAAF F+ + Q+G+G ++R LK+ +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDEATQKQLGRGKRLRELLKQPQFD 427
Query: 79 -----------YAARRAILPMLQAEEDERFVKEWKKYLEY-EAEVMKDVPGWKV 120
YA + ++ + EE +F +E + YL+ +AE +K+V KV
Sbjct: 428 PLNLAEQVAIVYAGVKGLIDEVPEEEVVKFARELRDYLKTNKAEFLKNVLSEKV 481
>sp|A5GV72|ATPA_SYNR3 ATP synthase subunit alpha OS=Synechococcus sp. (strain RCC307)
GN=atpA PE=3 SV=1
Length = 505
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRALKEEK-- 78
GG A + ++I +A F LAAF F+ + Q+G+G ++R LK+ +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDAATQAQLGRGKRLRELLKQAQFS 427
Query: 79 -----------YAARRAILPMLQAEEDERFVKEWKKYLE 106
YA + +L L E+ FV+E + YL+
Sbjct: 428 PLLLAEQVAIVYAGTKGLLDELPVEKVTEFVRELRDYLK 466
>sp|B6EMU1|TRMB_ALISL tRNA (guanine-N(7)-)-methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=trmB PE=3 SV=1
Length = 238
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 85 ILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP 132
I P L AE +W+ Y E+ EVM PG+ EN+ G ++P
Sbjct: 164 IRPKLNAEGVFHMATDWENYAEHMIEVMNAAPGY---ENIATDGDYIP 208
>sp|A2C4J5|ATPA_PROM1 ATP synthase subunit alpha OS=Prochlorococcus marinus (strain
NATL1A) GN=atpA PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRALKEEK-- 78
GG A + ++I +A F LAAF F+ + Q+G+G ++R LK+ +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDEATQKQLGRGKRLRELLKQPQFD 427
Query: 79 -----------YAARRAILPMLQAEEDERFVKEWKKYLEY-EAEVMKDVPGWKV 120
YA + ++ + E+ F +E + YL+ +A+ +K+V KV
Sbjct: 428 PLNLAEQVAIVYAGVKGLIDEVPEEKVVNFARELRDYLKTNKADFLKNVLSEKV 481
>sp|Q8L836|MA657_ARATH 65-kDa microtubule-associated protein 7 OS=Arabidopsis thaliana
GN=MAP65-7 PE=2 SV=1
Length = 603
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 45 SAMALFLAAFGAF-SYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKK 103
+ +A LAA G F S+ + +G+K +LKE K AA R +L L+ ++DER K+
Sbjct: 77 AEIASLLAALGVFNSHSPMKAKEGSK---SLKE-KLAAVRPMLEDLRLQKDERM----KQ 128
Query: 104 YLEYEAEVMK 113
+++ +A++ K
Sbjct: 129 FVDIKAQIEK 138
>sp|Q569K6|CC157_HUMAN Coiled-coil domain-containing protein 157 OS=Homo sapiens
GN=CCDC157 PE=2 SV=3
Length = 752
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 66 KGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWK 102
+ K+ +ALK+E+ A RR QAEEDE+ + EW+
Sbjct: 310 QAGKLEQALKQEQGARRR------QAEEDEQCLSEWE 340
>sp|O25654|PPK_HELPY Polyphosphate kinase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=ppk PE=3 SV=1
Length = 675
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLE 106
+Y+VGK + I +AL E + ++L L+A DE W K LE
Sbjct: 370 LYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALE 415
>sp|Q9ZM10|PPK_HELPJ Polyphosphate kinase OS=Helicobacter pylori (strain J99) GN=ppk
PE=3 SV=1
Length = 675
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 61 MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLE 106
+Y+VGK + I +AL E + ++L L+A DE W K LE
Sbjct: 370 LYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALE 415
>sp|A7Z4C9|Y1492_BACA2 UPF0348 protein RBAM_014920 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=RBAM_014920 PE=3 SV=1
Length = 415
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 23 DGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSY-------GMYQVGKGNKIRRALK 75
D P Y R I T G SAM + A A Y ++ IR+AL
Sbjct: 157 DLSKPNNILGFHYVRAIHTSG-SAMKPYTTARIASQYHDAELPGDNSRIASATSIRKALI 215
Query: 76 EEKYAARRAILPMLQAEEDERFVKEW 101
E+ AA R+ LP A E E + +
Sbjct: 216 EKGTAAARSFLPEASARELEAYRNSY 241
>sp|A8G6V1|ATPA_PROM2 ATP synthase subunit alpha OS=Prochlorococcus marinus (strain MIT
9215) GN=atpA PE=3 SV=1
Length = 505
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 28 GGFAPVRYARRIPTKGPSAMALF--LAAFGAFSYGM-----YQVGKGNKIRRALKEEK-- 78
GG A + ++I +A F LAAF F+ + Q+ +G ++R LK+ +
Sbjct: 368 GGAAQTKAIKKIAGTLKLELAQFDELAAFSQFASDLDEATQQQLERGKRLRELLKQPQFS 427
Query: 79 -----------YAARRAILPMLQAEEDERFVKEWKKYL-----EYEAEVMKD 114
YA + ++ + EE +F E ++YL E+ E++K+
Sbjct: 428 PLNLAEQVAVVYAGVKGLIDEVPVEEVTKFATELREYLKLNKAEFIEEILKE 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,974,878
Number of Sequences: 539616
Number of extensions: 2590369
Number of successful extensions: 7104
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7084
Number of HSP's gapped (non-prelim): 28
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)