Query 032331
Match_columns 143
No_of_seqs 101 out of 158
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06212 GRIM-19: GRIM-19 prot 100.0 5.4E-64 1.2E-68 381.8 13.1 124 16-139 1-124 (130)
2 KOG3300 NADH:ubiquinone oxidor 100.0 1E-60 2.2E-65 365.7 10.4 128 12-139 1-128 (146)
3 PF10883 DUF2681: Protein of u 82.6 4.1 8.9E-05 29.5 5.3 32 48-79 9-40 (87)
4 PRK09174 F0F1 ATP synthase sub 82.1 11 0.00023 30.6 8.1 44 28-76 42-89 (204)
5 PF14880 COX14: Cytochrome oxi 80.9 6.1 0.00013 26.1 5.3 25 55-79 30-54 (59)
6 PF15061 DUF4538: Domain of un 72.9 8.2 0.00018 26.1 4.1 37 41-96 2-38 (58)
7 PF06305 DUF1049: Protein of u 64.5 36 0.00077 22.0 6.1 17 61-77 40-56 (68)
8 TIGR01167 LPXTG_anchor LPXTG-m 58.8 15 0.00033 20.8 2.9 26 38-64 1-28 (34)
9 PF12273 RCR: Chitin synthesis 57.1 10 0.00022 28.1 2.5 13 51-63 9-21 (130)
10 PF09813 Coiled-coil_56: Coile 54.6 10 0.00023 28.2 2.1 37 33-69 38-78 (100)
11 PF06724 DUF1206: Domain of Un 51.3 32 0.0007 22.9 4.0 27 44-70 45-71 (73)
12 PF15190 DUF4583: Domain of un 49.2 71 0.0015 24.8 6.0 31 46-76 8-38 (128)
13 KOG4111 Translocase of outer m 47.1 50 0.0011 25.9 4.9 44 44-87 80-123 (136)
14 KOG2629 Peroxisomal membrane a 46.2 50 0.0011 28.9 5.3 33 38-70 77-109 (300)
15 PF14316 DUF4381: Domain of un 43.7 1.2E+02 0.0027 22.7 6.6 8 94-101 66-73 (146)
16 PF14978 MRP-63: Mitochondrial 40.7 65 0.0014 23.3 4.4 33 71-103 24-56 (91)
17 PLN03155 cytochrome c oxidase 38.4 59 0.0013 22.4 3.7 30 46-75 18-47 (63)
18 KOG1298 Squalene monooxygenase 37.6 95 0.0021 28.9 5.9 55 42-96 437-494 (509)
19 PRK13460 F0F1 ATP synthase sub 36.9 1.9E+02 0.0042 22.2 8.5 9 27-35 6-14 (173)
20 PF15048 OSTbeta: Organic solu 36.9 35 0.00075 26.4 2.6 28 47-74 37-64 (125)
21 PF01349 Flavi_NS4B: Flaviviru 36.8 1.1E+02 0.0024 26.2 5.9 59 28-114 86-150 (254)
22 cd08906 START_STARD3-like Chol 35.8 43 0.00093 26.8 3.2 29 92-120 1-29 (209)
23 COG4736 CcoQ Cbb3-type cytochr 35.3 57 0.0012 22.1 3.2 40 50-95 16-55 (60)
24 PF10864 DUF2663: Protein of u 34.8 1.5E+02 0.0033 22.9 5.9 37 46-82 58-94 (130)
25 PF10183 ESSS: ESSS subunit of 34.1 1.8E+02 0.004 21.1 6.7 51 26-79 37-94 (105)
26 PF12273 RCR: Chitin synthesis 33.5 54 0.0012 24.3 3.2 26 47-72 2-27 (130)
27 KOG4056 Translocase of outer m 33.2 39 0.00085 26.7 2.4 26 44-69 8-33 (143)
28 KOG4782 Predicted membrane pro 33.2 48 0.001 24.8 2.8 47 20-66 26-83 (108)
29 TIGR00985 3a0801s04tom mitocho 32.5 2.5E+02 0.0053 22.1 7.2 22 45-66 7-28 (148)
30 PLN00047 photosystem II biogen 32.2 66 0.0014 28.0 3.9 58 56-114 193-250 (283)
31 COG1862 YajC Preprotein transl 30.7 1.8E+02 0.0038 21.3 5.4 16 47-63 9-24 (97)
32 PF10960 DUF2762: Protein of u 30.2 1.1E+02 0.0023 21.2 4.0 17 54-70 16-32 (71)
33 PF00140 Sigma70_r1_2: Sigma-7 29.7 83 0.0018 18.7 3.0 27 82-108 10-36 (37)
34 KOG3415 Putative Rab5-interact 29.6 1.1E+02 0.0024 23.7 4.3 48 38-85 62-114 (129)
35 PF02656 DUF202: Domain of unk 29.2 96 0.0021 20.3 3.6 22 46-67 49-70 (73)
36 PF11654 DUF2665: Protein of u 28.4 59 0.0013 21.1 2.3 15 49-63 10-24 (47)
37 PRK13454 F0F1 ATP synthase sub 28.0 3E+02 0.0064 21.6 7.1 9 27-35 19-27 (181)
38 KOG0158 Cytochrome P450 CYP3/C 27.6 1.7E+02 0.0037 27.1 5.9 89 53-143 310-420 (499)
39 COG4509 Uncharacterized protei 26.9 2.9E+02 0.0062 23.5 6.6 23 46-68 8-30 (244)
40 PF12579 DUF3755: Protein of u 26.3 84 0.0018 19.0 2.6 29 89-117 3-31 (35)
41 PF05545 FixQ: Cbb3-type cytoc 26.1 1.2E+02 0.0025 18.9 3.3 25 47-71 13-37 (49)
42 TIGR01071 rplO_bact ribosomal 26.0 63 0.0014 24.7 2.5 35 7-47 32-68 (145)
43 PF06697 DUF1191: Protein of u 25.8 40 0.00086 29.2 1.5 18 65-82 234-251 (278)
44 PF07830 PP2C_C: Protein serin 24.9 33 0.00072 24.4 0.7 12 21-32 59-70 (81)
45 PF04999 FtsL: Cell division p 24.8 2.4E+02 0.0052 19.5 8.2 22 89-110 45-66 (97)
46 COG5278 Predicted periplasmic 24.6 2.1E+02 0.0046 23.5 5.5 82 44-125 12-106 (207)
47 PF14143 YrhC: YrhC-like prote 24.4 1.3E+02 0.0028 21.0 3.6 31 47-77 41-71 (72)
48 PF01102 Glycophorin_A: Glycop 24.4 1.2E+02 0.0026 23.0 3.7 22 31-57 53-74 (122)
49 PRK06975 bifunctional uroporph 24.1 6.2E+02 0.013 24.0 10.1 34 29-62 309-342 (656)
50 COG3726 AhpA Uncharacterized m 23.9 3.7E+02 0.008 22.6 6.7 60 53-112 23-88 (214)
51 PRK05592 rplO 50S ribosomal pr 23.8 76 0.0016 24.5 2.6 34 7-46 33-68 (146)
52 PF14880 COX14: Cytochrome oxi 23.8 2.2E+02 0.0047 18.6 6.0 18 59-76 31-48 (59)
53 PF06936 Selenoprotein_S: Sele 23.5 2.6E+02 0.0057 22.7 5.7 10 89-98 92-101 (190)
54 PRK04032 hypothetical protein; 23.4 93 0.002 24.7 3.0 12 28-39 15-26 (159)
55 PRK05585 yajC preprotein trans 23.0 2.4E+02 0.0053 20.6 5.0 12 54-65 24-35 (106)
56 PF09835 DUF2062: Uncharacteri 22.8 1.8E+02 0.0038 21.8 4.4 23 43-65 120-142 (154)
57 PF10721 DUF2514: Protein of u 22.7 3.8E+02 0.0082 21.0 8.8 24 45-68 2-25 (162)
58 PLN02985 squalene monooxygenas 22.0 1.7E+02 0.0036 26.6 4.7 50 43-92 438-490 (514)
59 PRK10920 putative uroporphyrin 21.5 6E+02 0.013 22.8 10.0 29 38-66 31-59 (390)
60 PF04415 DUF515: Protein of un 21.2 1.8E+02 0.0039 26.6 4.8 38 41-79 30-67 (416)
61 PF11264 ThylakoidFormat: Thyl 21.0 2.5E+02 0.0055 23.3 5.3 58 56-114 138-202 (216)
62 PRK11677 hypothetical protein; 21.0 3.1E+02 0.0067 21.1 5.4 19 69-87 29-47 (134)
63 KOG4403 Cell surface glycoprot 20.9 5.5E+02 0.012 24.2 7.8 48 48-98 217-264 (575)
64 KOG1962 B-cell receptor-associ 20.8 4.9E+02 0.011 21.8 6.9 21 43-63 101-121 (216)
65 PRK10927 essential cell divisi 20.7 26 0.00056 30.9 -0.6 70 46-115 36-139 (319)
66 PF06864 PAP_PilO: Pilin acces 20.5 2.8E+02 0.006 24.5 5.7 57 29-85 151-208 (414)
67 PTZ00367 squalene epoxidase; P 20.4 3.2E+02 0.0069 25.4 6.3 25 43-67 452-476 (567)
No 1
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=100.00 E-value=5.4e-64 Score=381.85 Aligned_cols=124 Identities=56% Similarity=1.010 Sum_probs=121.9
Q ss_pred CCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 032331 16 KDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDE 95 (143)
Q Consensus 16 ~~~~~~QDmPP~GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR 95 (143)
||+|++|||||+|||+||+|+||+|+|||||+++|++++++|+||||+++++|++++++++|++++|+||+||||||+||
T Consensus 1 ~~~~~~QDmPP~GGY~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~~~~r~~r~~~~E~~~ar~al~PlLqAE~DR 80 (130)
T PF06212_consen 1 KAMPYKQDMPPPGGYPPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVGQGNRERRELKREKRWARIALLPLLQAEEDR 80 (130)
T ss_pred CCCcccCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 032331 96 RFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR 139 (143)
Q Consensus 96 ~~lr~~~~~~e~E~eiMkdVpGWkvGe~vY~t~rw~~P~~~el~ 139 (143)
++|+++++|+++|++||||||||||||||||||+|++|+++|+.
T Consensus 81 ~~lr~~~~~~~~E~~lMkdVpgW~vGe~vY~t~r~~~P~~~e~y 124 (130)
T PF06212_consen 81 RYLRRLKANREEEAELMKDVPGWKVGEPVYNTDRWVPPTFDEYY 124 (130)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCCCCcccCCcccCCcHHHHH
Confidence 99999999999999999999999999999999999999999864
No 2
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-60 Score=365.70 Aligned_cols=128 Identities=71% Similarity=1.177 Sum_probs=126.9
Q ss_pred ccccCCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 032331 12 MASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQA 91 (143)
Q Consensus 12 m~s~~~~~~~QDmPP~GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqA 91 (143)
|+||+++|++|||||||||.||+|+|++|++|+||.++|++++|+++||.|.++++||+++++++|+..+|++|+|+|||
T Consensus 1 ~asv~~~~~kQDmPPpGGy~~i~y~R~~pk~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr~kiEd~~a~nai~PiL~A 80 (146)
T KOG3300|consen 1 MASVKDMPLKQDMPPPGGYAPIRYARRIPKTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRRLKIEDYAARNAILPILQA 80 (146)
T ss_pred CCccCCCcccccCCCCCCcCcccccccCCccCCCcchhhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhHHHHHHhccCCCCcccccccccCCCccCCCCCCCC
Q 032331 92 EEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGELR 139 (143)
Q Consensus 92 E~DR~~lr~~~~~~e~E~eiMkdVpGWkvGe~vY~t~rw~~P~~~el~ 139 (143)
|+||++|+++|+|+|+|++|||||||||||||||||.+|++|++.||.
T Consensus 81 ErDr~~l~~lrkn~eeEaeiMKdVPgWkvGEpVy~Tlrwv~P~~~Ely 128 (146)
T KOG3300|consen 81 ERDRRFLSELRKNLEEEAEIMKDVPGWKVGEPVYNTLRWVPPATGELY 128 (146)
T ss_pred HHHHHHHHHHHHhHHHHHHHHccCCCcccCccceecceecCcchhhhh
Confidence 999999999999999999999999999999999999999999999997
No 3
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=82.64 E-value=4.1 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331 48 ALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79 (143)
Q Consensus 48 ~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~ 79 (143)
.++++++++++|.+|++-+.+++...+..|..
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~ 40 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAKKQNAKLQKENE 40 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888777777666655543
No 4
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=82.08 E-value=11 Score=30.65 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHH
Q 032331 28 GGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQV----GKGNKIRRALKE 76 (143)
Q Consensus 28 GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~----~~~~re~r~~~~ 76 (143)
||+||+++. .+|. -..++++.++++.|-+.++ ..+.-+.|...+
T Consensus 42 ~~~p~~~~~-~~~~----~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I 89 (204)
T PRK09174 42 GVFPPFDST-HYAS----QLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRI 89 (204)
T ss_pred CCCCCCcch-hccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999986 3443 3333334444444333333 444444444444
No 5
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=80.92 E-value=6.1 Score=26.08 Aligned_cols=25 Identities=36% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331 55 GAFSYGMYQVGKGNKIRRALKEEKY 79 (143)
Q Consensus 55 ~~~~~G~y~~~~~~re~r~~~~E~~ 79 (143)
++++|..|.+.+.|+.+++...|+.
T Consensus 30 ~~~~~~~y~~~~~~r~~~~~~~e~~ 54 (59)
T PF14880_consen 30 GLTVYTVYSYFKYNRRRRAEWIERE 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888877555543
No 6
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=72.92 E-value=8.2 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHH
Q 032331 41 TKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDER 96 (143)
Q Consensus 41 ~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR~ 96 (143)
.||++-..+|++++++++..+|-+ .+-|+|..|+=+.
T Consensus 2 ~rg~r~~~~~ggfVg~iG~a~Ypi-------------------~~~Pmm~~eeYk~ 38 (58)
T PF15061_consen 2 LRGWRYALFVGGFVGLIGAALYPI-------------------YFRPMMNPEEYKK 38 (58)
T ss_pred CccccchhhHHHHHHHHHHHHhhh-------------------hcccccChHHHHH
Confidence 368888899999999999999863 4567777777664
No 7
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.47 E-value=36 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=7.1
Q ss_pred HHHhhhhHHHHHHHHHH
Q 032331 61 MYQVGKGNKIRRALKEE 77 (143)
Q Consensus 61 ~y~~~~~~re~r~~~~E 77 (143)
+....+..++.+++++|
T Consensus 40 ~~~~~~~r~~~~~~~k~ 56 (68)
T PF06305_consen 40 LPSRLRLRRRIRRLRKE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 8
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=58.78 E-value=15 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=12.6
Q ss_pred cCCCCC--CCHHHHHHHHHHHHHHHHHHh
Q 032331 38 RIPTKG--PSAMALFLAAFGAFSYGMYQV 64 (143)
Q Consensus 38 ~lP~rg--~sg~~~~~~~~~~~~~G~y~~ 64 (143)
.+|++| -+-..+++|+ ++++.+.+.+
T Consensus 1 ~LP~TG~~~~~~~~~~G~-~l~~~~~~~~ 28 (34)
T TIGR01167 1 KLPKTGESGNSLLLLLGL-LLLGLGGLLL 28 (34)
T ss_pred CCCCCCCcccHHHHHHHH-HHHHHHHHHh
Confidence 478888 3333333443 3333444443
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.12 E-value=10 Score=28.14 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 032331 51 LAAFGAFSYGMYQ 63 (143)
Q Consensus 51 ~~~~~~~~~G~y~ 63 (143)
.+++.++.++++.
T Consensus 9 i~~i~l~~~~~~~ 21 (130)
T PF12273_consen 9 IVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444433
No 10
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=54.59 E-value=10 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.6
Q ss_pred ccccccCCC----CCCCHHHHHHHHHHHHHHHHHHhhhhHH
Q 032331 33 VRYARRIPT----KGPSAMALFLAAFGAFSYGMYQVGKGNK 69 (143)
Q Consensus 33 i~ykR~lP~----rg~sg~~~~~~~~~~~~~G~y~~~~~~r 69 (143)
.+++|.+.+ -..+|..++++++||.+|.+|.+.|-+=
T Consensus 38 ~~~kr~~~~~R~rN~~Tgl~L~~~v~gIY~YTi~sV~Qe~F 78 (100)
T PF09813_consen 38 QQLKRKLQRRRRRNLLTGLALGAFVVGIYAYTIYSVKQEDF 78 (100)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhheeeeechhhh
Confidence 455665544 3367888888888999999888876553
No 11
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=51.33 E-value=32 Score=22.91 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032331 44 PSAMALFLAAFGAFSYGMYQVGKGNKI 70 (143)
Q Consensus 44 ~sg~~~~~~~~~~~~~G~y~~~~~~re 70 (143)
+....+.++.+++.+||.|++.++...
T Consensus 45 ~G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 45 FGRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557778888899999999999987754
No 12
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=49.20 E-value=71 Score=24.79 Aligned_cols=31 Identities=13% Similarity=-0.118 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032331 46 AMALFLAAFGAFSYGMYQVGKGNKIRRALKE 76 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~~re~r~~~~ 76 (143)
|+..++.++.++++.+|.+++-+-.-+.++-
T Consensus 8 gWv~v~lyLl~s~~~~yyvFei~~~Yn~laL 38 (128)
T PF15190_consen 8 GWVGVSLYLLASAAAVYYVFEIHDTYNRLAL 38 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 6777778888888999988877753333333
No 13
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.14 E-value=50 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 032331 44 PSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILP 87 (143)
Q Consensus 44 ~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~P 87 (143)
|||.+++.+...++..+.-.+....++.++..+|+..+.+-+-|
T Consensus 80 fsg~a~Wi~tTt~lIL~vP~i~e~E~~q~~~e~e~Qq~q~ll~p 123 (136)
T KOG4111|consen 80 FSGKAAWIATTTFLILVVPLIFETEREQQLQEQEKQQRQQLLAP 123 (136)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 67888888888888888888899999998888888887776665
No 14
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.22 E-value=50 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=23.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032331 38 RIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKI 70 (143)
Q Consensus 38 ~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re 70 (143)
+.+-+-|+-+.++|++.+-.+||+|.+.+.-..
T Consensus 77 ~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~ 109 (300)
T KOG2629|consen 77 QNVLRRWRDYFVMAVILAGIAYAAYRFVKSYVL 109 (300)
T ss_pred ccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334455777777888888889999988655433
No 15
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=43.67 E-value=1.2e+02 Score=22.73 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 032331 94 DERFVKEW 101 (143)
Q Consensus 94 DR~~lr~~ 101 (143)
|...+.++
T Consensus 66 ~~~~~~~l 73 (146)
T PF14316_consen 66 DAEWLAAL 73 (146)
T ss_pred cHHHHHHH
Confidence 44444443
No 16
>PF14978 MRP-63: Mitochondrial ribosome protein 63
Probab=40.68 E-value=65 Score=23.32 Aligned_cols=33 Identities=30% Similarity=0.263 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHH
Q 032331 71 RRALKEEKYAARRAILPMLQAEEDERFVKEWKK 103 (143)
Q Consensus 71 ~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~~~ 103 (143)
.+++++|...--+---|+|.+|+.....+.+++
T Consensus 24 ~~~le~E~eN~~~Ls~PYLT~EQE~gh~~e~r~ 56 (91)
T PF14978_consen 24 IRRLEIEEENMYWLSRPYLTAEQEYGHAKERRK 56 (91)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHcchHHHHhH
Confidence 466777877777778899999999998888877
No 17
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=38.37 E-value=59 Score=22.37 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032331 46 AMALFLAAFGAFSYGMYQVGKGNKIRRALK 75 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~~re~r~~~ 75 (143)
--+.++..+|+.+-|+|+...+|-+++...
T Consensus 18 KEI~iG~~LGL~AG~~WKmhHWn~qrkt~~ 47 (63)
T PLN03155 18 KELCIGLTLGLAAGGLWKMHHWNEQRKTRS 47 (63)
T ss_pred hhHHHHhHHHHhhhhHHHHhhhhhHHHHHH
Confidence 346788899999999999999998777543
No 18
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=37.61 E-value=95 Score=28.92 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHhhhhhhhhhHhHH
Q 032331 42 KGPSAMALFLAAFGAFSYGMYQVGKGNKIRR---ALKEEKYAARRAILPMLQAEEDER 96 (143)
Q Consensus 42 rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r---~~~~E~~~ar~al~PlLqAE~DR~ 96 (143)
--+++.+++..+++++.||.|++..-.---+ +-.+=-.+|-..|.|+|.||--+.
T Consensus 437 lnP~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~i~~~A~~vi~P~i~aEgv~q 494 (509)
T KOG1298|consen 437 LNPRPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLRILSLASSVIFPIIKAEGVSQ 494 (509)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 3478899999999999999998843221111 112224566778999999996543
No 19
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.93 E-value=1.9e+02 Score=22.21 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=6.7
Q ss_pred CCCCCcccc
Q 032331 27 PGGFAPVRY 35 (143)
Q Consensus 27 ~GGY~pi~y 35 (143)
.||.+.+++
T Consensus 6 ~~~~~~l~~ 14 (173)
T PRK13460 6 AKGLSLLDV 14 (173)
T ss_pred cCCCCccCC
Confidence 377888886
No 20
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=36.86 E-value=35 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032331 47 MALFLAAFGAFSYGMYQVGKGNKIRRAL 74 (143)
Q Consensus 47 ~~~~~~~~~~~~~G~y~~~~~~re~r~~ 74 (143)
+++++..+.+..+||..++.+.+.+|..
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~ANRnr 64 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQANRNR 64 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence 5788889999999999998777666544
No 21
>PF01349 Flavi_NS4B: Flavivirus non-structural protein NS4B; InterPro: IPR001528 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4B protein is small and poorly conserved among the Flaviviruses. NS4B contains multiple hydrophobic potential membrane spanning regions []. NS4B may form membrane components of the viral replication complex and could be involved in membrane localisation of NS3 and NS5 (see IPR000208 from INTERPRO) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=36.83 E-value=1.1e+02 Score=26.19 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=37.5
Q ss_pred CCCCcccccccCCC------CCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHH
Q 032331 28 GGFAPVRYARRIPT------KGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEW 101 (143)
Q Consensus 28 GGY~pi~ykR~lP~------rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~ 101 (143)
+|+|=+..+...|- .+++..++++++....+ -| .-++|-+|||.-|+.-|+.
T Consensus 86 ~G~PF~~~~~~V~~L~~g~~~~~T~~tl~~~~~l~~~--H~--------------------a~~~PG~qA~~~r~Aqkr~ 143 (254)
T PF01349_consen 86 KGWPFFKMDLSVPLLLLGCWNQMTPTTLVAGVGLAAV--HY--------------------AIVLPGLQAEATRRAQKRT 143 (254)
T ss_pred CCCcceecchhHHHHHHHHhccCCHHHHHHHHHHHHH--HH--------------------HHHhhHHHHHHHHHHHHHH
Confidence 67777777766665 44555555554332221 11 2368999999988877776
Q ss_pred HHhHHHHHHhccC
Q 032331 102 KKYLEYEAEVMKD 114 (143)
Q Consensus 102 ~~~~e~E~eiMkd 114 (143)
-+- ||||
T Consensus 144 aag------i~KN 150 (254)
T PF01349_consen 144 AAG------IMKN 150 (254)
T ss_pred HHH------HhcC
Confidence 544 9999
No 22
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=35.78 E-value=43 Score=26.80 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=26.8
Q ss_pred hHhHHHHHHHHHhHHHHHHhccCCCCccc
Q 032331 92 EEDERFVKEWKKYLEYEAEVMKDVPGWKV 120 (143)
Q Consensus 92 E~DR~~lr~~~~~~e~E~eiMkdVpGWkv 120 (143)
++|+.|+++=++.+++=.+|+.+-.||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~~~~W~l 29 (209)
T cd08906 1 PQEREYVRQGKEALAVVEQILAQEENWKF 29 (209)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCEE
Confidence 47899999999999999999999999996
No 23
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.28 E-value=57 Score=22.08 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 032331 50 FLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDE 95 (143)
Q Consensus 50 ~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR 95 (143)
++..+.+.++-+|.+..++|.+ .-.+...++|+=+.++|-
T Consensus 16 ~~~~l~fiavi~~ayr~~~K~~------~d~aa~~~l~l~Dd~q~~ 55 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGKKGE------FDEAARGILPLNDDAQDA 55 (60)
T ss_pred HHHHHHHHHHHHHHhcccchhh------HHHHhccCCCCCcchhhh
Confidence 3333334444455555555543 345566778887777763
No 24
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=34.83 E-value=1.5e+02 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 032331 46 AMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAAR 82 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar 82 (143)
...++..++++.+|++-.+.+.+.+..|...+...|.
T Consensus 58 ~~~l~~ll~~~~~~~~~~~~~kK~eKAEkefhaLRcE 94 (130)
T PF10864_consen 58 PVHLFWLLALAFSYWAMYYLKKKEEKAEKEFHALRCE 94 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456666677777777777766666655555444443
No 25
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=34.14 E-value=1.8e+02 Score=21.07 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=27.3
Q ss_pred CCCCCCcccccccCCCCC-------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331 26 PPGGFAPVRYARRIPTKG-------PSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79 (143)
Q Consensus 26 P~GGY~pi~ykR~lP~rg-------~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~ 79 (143)
||.|+ -|.++.+.-| +....+|+.++++...+++.+++=+...++-++++.
T Consensus 37 ~p~g~---l~~~~p~~~G~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA 94 (105)
T PF10183_consen 37 PPNGW---LFGKNPPSPGEKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREA 94 (105)
T ss_pred CCCcc---ccCCCCCcCCCcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55666 6777776544 334445555555555566666554444444444333
No 26
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.48 E-value=54 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 032331 47 MALFLAAFGAFSYGMYQVGKGNKIRR 72 (143)
Q Consensus 47 ~~~~~~~~~~~~~G~y~~~~~~re~r 72 (143)
|++|++++++.++-|......+|+|+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777676666555
No 27
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.24 E-value=39 Score=26.66 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHH
Q 032331 44 PSAMALFLAAFGAFSYGMYQVGKGNK 69 (143)
Q Consensus 44 ~sg~~~~~~~~~~~~~G~y~~~~~~r 69 (143)
.++..+.++++|+.+.|++.|+...|
T Consensus 8 ~~~~vI~agiag~af~gYciYFd~KR 33 (143)
T KOG4056|consen 8 LRTSVIAAGIAGLAFIGYCIYFDKKR 33 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccc
Confidence 46788999999999999999876544
No 28
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=33.16 E-value=48 Score=24.81 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=35.6
Q ss_pred CcccCCCCC-----CCCcccccccCCC------CCCCHHHHHHHHHHHHHHHHHHhhh
Q 032331 20 VLQDGPPPG-----GFAPVRYARRIPT------KGPSAMALFLAAFGAFSYGMYQVGK 66 (143)
Q Consensus 20 ~~QDmPP~G-----GY~pi~ykR~lP~------rg~sg~~~~~~~~~~~~~G~y~~~~ 66 (143)
-+-|+||+- -++.+++.|++|. --.|+..+.+.+++|-.|.||.+.|
T Consensus 26 d~EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alViaIY~YTfYSikQ 83 (108)
T KOG4782|consen 26 DIEDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALVIAIYGYTFYSIKQ 83 (108)
T ss_pred chhhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhheeeehhH
Confidence 467888864 3566777777765 3478889999999999999998764
No 29
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.52 E-value=2.5e+02 Score=22.08 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 032331 45 SAMALFLAAFGAFSYGMYQVGK 66 (143)
Q Consensus 45 sg~~~~~~~~~~~~~G~y~~~~ 66 (143)
+..++.+|++++.+.|+..|+-
T Consensus 7 ~~~~~~ag~a~~~flgYciYFD 28 (148)
T TIGR00985 7 SNVVIAAGIAAAAFLGYAIYFD 28 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4556667767777777766653
No 30
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=32.15 E-value=66 Score=27.96 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHhHHHHHHhccC
Q 032331 56 AFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKD 114 (143)
Q Consensus 56 ~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~e~E~eiMkd 114 (143)
++++|+|.+.+...-......|+...-+.| +--.+|.|.+.++......+.=.++|++
T Consensus 193 lfAIGLf~LLe~a~~~d~~~l~~l~e~Lgl-s~~kv~KDLdlYrsnLeKm~QA~elmeE 250 (283)
T PLN00047 193 FFAIGLFRLLELANATEPTALEKLCAALNI-NKRSVDRDLDVYRGLLSKLVQAKELLKE 250 (283)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 567788887655443222234444444444 4477888888777777666666666665
No 31
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=30.72 E-value=1.8e+02 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032331 47 MALFLAAFGAFSYGMYQ 63 (143)
Q Consensus 47 ~~~~~~~~~~~~~G~y~ 63 (143)
..++..++ ++...||.
T Consensus 9 ~~~ll~~v-l~~~ifyF 24 (97)
T COG1862 9 LVLLLPLV-LIFAIFYF 24 (97)
T ss_pred HHHHHHHH-HHHHHHHH
Confidence 33333333 33334444
No 32
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=30.16 E-value=1.1e+02 Score=21.21 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhHHH
Q 032331 54 FGAFSYGMYQVGKGNKI 70 (143)
Q Consensus 54 ~~~~~~G~y~~~~~~re 70 (143)
++++++-++.+.+.|++
T Consensus 16 A~LFv~Ll~yvlK~~~~ 32 (71)
T PF10960_consen 16 AVLFVWLLFYVLKENKK 32 (71)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 33444444444444443
No 33
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=29.65 E-value=83 Score=18.67 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=20.1
Q ss_pred HHhhhhhhhhhHhHHHHHHHHHhHHHH
Q 032331 82 RRAILPMLQAEEDERFVKEWKKYLEYE 108 (143)
Q Consensus 82 r~al~PlLqAE~DR~~lr~~~~~~e~E 108 (143)
.|.=.|+|.+|+...+-++.++-.+.+
T Consensus 10 ei~~~~LLt~eeE~~LA~~i~~g~~~a 36 (37)
T PF00140_consen 10 EIGRYPLLTAEEEIELARRIRKGDEAA 36 (37)
T ss_dssp HHHHS-EETTHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhHHhc
Confidence 455679999999999988887765443
No 34
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.65 E-value=1.1e+02 Score=23.65 Aligned_cols=48 Identities=25% Similarity=0.221 Sum_probs=31.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHhh
Q 032331 38 RIPTKGPSAMALFLAAFGAFSYGMYQVGKGNKIR-----RALKEEKYAARRAI 85 (143)
Q Consensus 38 ~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~-----r~~~~E~~~ar~al 85 (143)
.+|-+|+=|.++|.++....+|++|.-++...|. -|+-.|-.-+-+|+
T Consensus 62 i~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa~ 114 (129)
T KOG3415|consen 62 IIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFAL 114 (129)
T ss_pred hchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHHH
Confidence 3577788888888887777788888766666553 24455555444444
No 35
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=29.19 E-value=96 Score=20.34 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 032331 46 AMALFLAAFGAFSYGMYQVGKG 67 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~ 67 (143)
|..+++..+.+..+|+++|.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~ry~~~ 70 (73)
T PF02656_consen 49 GLLLIVLGLLTLIYGIYRYRRR 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666777766543
No 36
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=28.39 E-value=59 Score=21.10 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032331 49 LFLAAFGAFSYGMYQ 63 (143)
Q Consensus 49 ~~~~~~~~~~~G~y~ 63 (143)
+||+++|+++|-.|-
T Consensus 10 ~~av~iG~~ayyl~e 24 (47)
T PF11654_consen 10 LFAVFIGTSAYYLYE 24 (47)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688889999888775
No 37
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.00 E-value=3e+02 Score=21.57 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=6.1
Q ss_pred CCCCCcccc
Q 032331 27 PGGFAPVRY 35 (143)
Q Consensus 27 ~GGY~pi~y 35 (143)
.||.+.+++
T Consensus 19 ~~gmp~ld~ 27 (181)
T PRK13454 19 APGMPQLDF 27 (181)
T ss_pred CCCCCCCcH
Confidence 467777765
No 38
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.64 E-value=1.7e+02 Score=27.10 Aligned_cols=89 Identities=20% Similarity=0.396 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----------hhhhhhhhHhHHHHHHHHHhHHHHHHhccC--CC-Ccc
Q 032331 53 AFGAFSYGMYQVGKGNKIRRALKEEKYAARRA----------ILPMLQAEEDERFVKEWKKYLEYEAEVMKD--VP-GWK 119 (143)
Q Consensus 53 ~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~a----------l~PlLqAE~DR~~lr~~~~~~e~E~eiMkd--Vp-GWk 119 (143)
.+.+++|.+|-+.+.-.-+.++..|-..+-.. =+|+|.+=-+ ..||.+=-.--.+++-+|| ++ +-.
T Consensus 310 ts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~-ETLR~yP~~~~~~R~C~k~~~i~~~~~ 388 (499)
T KOG0158|consen 310 TASTLSFALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIK-ETLRLYPPAPFLNRECTKDYEIPGGFV 388 (499)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHH-HHHhhCCCcccccceecCceecCCCeE
Confidence 35678899999999888888888887666222 2333332111 1111110011134445666 45 333
Q ss_pred c--ccccc-------cCCCccCCCCCCCCCCCC
Q 032331 120 V--GENVY-------NSGRWMPPASGELRPEVW 143 (143)
Q Consensus 120 v--Ge~vY-------~t~rw~~P~~~el~~~~~ 143 (143)
+ |.+|+ |+.+++ |.+++..|+-|
T Consensus 389 i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF 420 (499)
T KOG0158|consen 389 IPKGTPVMIPTYALHHDPEYW-PEPEKFKPERF 420 (499)
T ss_pred eCCCCEEEeecccccCCcccC-CCcccCCCccC
Confidence 3 44444 455666 88888888744
No 39
>COG4509 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.86 E-value=2.9e+02 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 032331 46 AMALFLAAFGAFSYGMYQVGKGN 68 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~~ 68 (143)
+.+...++..++.|++|++.+.-
T Consensus 8 ~~~~tLv~viV~~f~~~kl~~~~ 30 (244)
T COG4509 8 KLSDTLVVVIVFCFSFYKLLIAA 30 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888875543
No 40
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=26.27 E-value=84 Score=19.01 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=23.3
Q ss_pred hhhhHhHHHHHHHHHhHHHHHHhccCCCC
Q 032331 89 LQAEEDERFVKEWKKYLEYEAEVMKDVPG 117 (143)
Q Consensus 89 LqAE~DR~~lr~~~~~~e~E~eiMkdVpG 117 (143)
+|..+..+.+.+-|.|...=-.-|+++||
T Consensus 3 ~q~~eNidLf~~~R~NI~~il~~m~~mpg 31 (35)
T PF12579_consen 3 FQLQENIDLFCQTRDNILAILNDMNDMPG 31 (35)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHcchh
Confidence 46778888888989888777777888876
No 41
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.13 E-value=1.2e+02 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 032331 47 MALFLAAFGAFSYGMYQVGKGNKIR 71 (143)
Q Consensus 47 ~~~~~~~~~~~~~G~y~~~~~~re~ 71 (143)
..++..++.+.++.+|.+..+||++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhh
Confidence 3344444455555666666555443
No 42
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle.
Probab=26.03 E-value=63 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=22.7
Q ss_pred hcCCCccccCCCCCcccCCCCCCCC--cccccccCCCCCCCHH
Q 032331 7 RKKPGMASVKDMPVLQDGPPPGGFA--PVRYARRIPTKGPSAM 47 (143)
Q Consensus 7 ~~~~~m~s~~~~~~~QDmPP~GGY~--pi~ykR~lP~rg~sg~ 47 (143)
||.+|=+|=.- --++ =||+ ..++.|.+|++||+..
T Consensus 32 rG~kGqk~R~g-----~~~~-~gfEGGQ~Pl~rrlPK~GF~~~ 68 (145)
T TIGR01071 32 RGHKGQKARSG-----GKVR-RGFEGGQMPLYRRLPKRGFSNK 68 (145)
T ss_pred CCCCcCcCCCC-----CCCC-CeecCCCCceEEECCCCCCCCc
Confidence 56666655420 1123 3477 7888999999998864
No 43
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=25.82 E-value=40 Score=29.16 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 032331 65 GKGNKIRRALKEEKYAAR 82 (143)
Q Consensus 65 ~~~~re~r~~~~E~~~ar 82 (143)
.-..|.+|..++|+++.+
T Consensus 234 ~~~vr~krk~k~~eMEr~ 251 (278)
T PF06697_consen 234 AMLVRYKRKKKIEEMERR 251 (278)
T ss_pred HhhhhhhHHHHHHHHHHh
Confidence 334445555556666644
No 44
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=24.89 E-value=33 Score=24.42 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=7.1
Q ss_pred cccCCCCCCCCc
Q 032331 21 LQDGPPPGGFAP 32 (143)
Q Consensus 21 ~QDmPP~GGY~p 32 (143)
.+++||-||...
T Consensus 59 ip~LPPGGGl~s 70 (81)
T PF07830_consen 59 IPGLPPGGGLAS 70 (81)
T ss_dssp -SS--TTTTCGG
T ss_pred CCCCcCCcCHHH
Confidence 789999998653
No 45
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.83 E-value=2.4e+02 Score=19.45 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=10.2
Q ss_pred hhhhHhHHHHHHHHHhHHHHHH
Q 032331 89 LQAEEDERFVKEWKKYLEYEAE 110 (143)
Q Consensus 89 LqAE~DR~~lr~~~~~~e~E~e 110 (143)
-+.|.+.+.+.....++.-|..
T Consensus 45 ~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 45 QQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444443
No 46
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.56 E-value=2.1e+02 Score=23.50 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhh----hhhH---------hHHHHHHHHHhHHHHHH
Q 032331 44 PSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPML----QAEE---------DERFVKEWKKYLEYEAE 110 (143)
Q Consensus 44 ~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlL----qAE~---------DR~~lr~~~~~~e~E~e 110 (143)
..+.++..+++.+++.-+|.-.+..++.-+.-+|.+..+.++.=++ .||. ++.||.-+.+.++.=.+
T Consensus 12 ~~~f~~~~ll~~~~~~~s~~~~~~~~~~~~~v~~t~~~~~a~~~l~s~~~~~esgqRGYLLTG~~~yL~py~~a~~~~~~ 91 (207)
T COG5278 12 ILSFVIGVLLLLLASGASYWSIQKSNQSTREVIETQQVLAAALDLLSAVSDAESGQRGYLLTGNDEYLEPYEEATEELDQ 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeecCCHhhhhHHHHHHHHHHH
Confidence 3344444444433333333333333333333447777766665544 4443 33467666666554444
Q ss_pred hccCCCCcccccccc
Q 032331 111 VMKDVPGWKVGENVY 125 (143)
Q Consensus 111 iMkdVpGWkvGe~vY 125 (143)
.++..----+++|.|
T Consensus 92 ~~~~l~~l~~d~p~~ 106 (207)
T COG5278 92 KLEELRALTADDPEL 106 (207)
T ss_pred HHHHHHHhcCCCHHH
Confidence 444333333334443
No 47
>PF14143 YrhC: YrhC-like protein
Probab=24.44 E-value=1.3e+02 Score=21.02 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032331 47 MALFLAAFGAFSYGMYQVGKGNKIRRALKEE 77 (143)
Q Consensus 47 ~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E 77 (143)
..+++++.+..++.|+-..+..+.++++..|
T Consensus 41 ~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E~ 71 (72)
T PF14143_consen 41 YIMMGAICIFLAGAFLFFRRSKKYQKKLEEE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667777777778888777777777766543
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.37 E-value=1.2e+02 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=8.0
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHH
Q 032331 31 APVRYARRIPTKGPSAMALFLAAFGAF 57 (143)
Q Consensus 31 ~pi~ykR~lP~rg~sg~~~~~~~~~~~ 57 (143)
.+.|... +|++..++++++|+|
T Consensus 53 ~~~ql~h-----~fs~~~i~~Ii~gv~ 74 (122)
T PF01102_consen 53 ERSQLVH-----RFSEPAIIGIIFGVM 74 (122)
T ss_dssp ---SSSS-----SSS-TCHHHHHHHHH
T ss_pred CCccccc-----CccccceeehhHHHH
Confidence 4455444 455444444444433
No 49
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.10 E-value=6.2e+02 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=13.6
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 032331 29 GFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMY 62 (143)
Q Consensus 29 GY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y 62 (143)
.|++..-+..-.+.|.--+.+...+++..+.|+|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 342 (656)
T PRK06975 309 PATPPEPPARRGRGSAALWFVVVVLACAAAVGGY 342 (656)
T ss_pred CCCCcCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333332222333333444445566
No 50
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=23.89 E-value=3.7e+02 Score=22.56 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHhhhhhhhhhHhHHHHHHHHHhHHHHHHhc
Q 032331 53 AFGAFSYGMYQVGKGNKIRRALKEEKYA------ARRAILPMLQAEEDERFVKEWKKYLEYEAEVM 112 (143)
Q Consensus 53 ~~~~~~~G~y~~~~~~re~r~~~~E~~~------ar~al~PlLqAE~DR~~lr~~~~~~e~E~eiM 112 (143)
++.+...|.+.+.+|+...+..+-|... .-+.+.|++-.-.|-.-|..+-.+...|..|.
T Consensus 23 ilv~l~qg~~~fs~g~Q~~qa~Q~e~L~~~Li~Q~A~s~s~ll~sn~d~e~l~allnql~k~~~Vl 88 (214)
T COG3726 23 ILVALMQGASWFSQGHQRAQANQLEELAQTLIRQVALSASPLLVSNPDEERLNALLNQLTKESLVL 88 (214)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhhhhhHhhcCccHHHHHHHHHHHhhcceee
Confidence 4445567888889999888888777543 34567788887788888888888877776554
No 51
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=23.85 E-value=76 Score=24.51 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=22.2
Q ss_pred hcCCCccccCCCCCcccCCCCCCCC--cccccccCCCCCCCH
Q 032331 7 RKKPGMASVKDMPVLQDGPPPGGFA--PVRYARRIPTKGPSA 46 (143)
Q Consensus 7 ~~~~~m~s~~~~~~~QDmPP~GGY~--pi~ykR~lP~rg~sg 46 (143)
||.+|=+|=. --.++=||+ ..++.|.+|++||+.
T Consensus 33 rG~KGqksR~------g~~~~~gFEGGQ~Pl~rrlPk~Gf~~ 68 (146)
T PRK05592 33 RGHKGQKARS------GGGVRPGFEGGQMPLYRRLPKRGFTN 68 (146)
T ss_pred CCCCcccCCC------CCCCCCccccCCCceEEEcccCCcCC
Confidence 5666665542 221223476 788899999999875
No 52
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=23.76 E-value=2.2e+02 Score=18.58 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=8.6
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 032331 59 YGMYQVGKGNKIRRALKE 76 (143)
Q Consensus 59 ~G~y~~~~~~re~r~~~~ 76 (143)
+..|.++...+.++..+.
T Consensus 31 ~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 31 LTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333454555555554444
No 53
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.49 E-value=2.6e+02 Score=22.71 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=6.2
Q ss_pred hhhhHhHHHH
Q 032331 89 LQAEEDERFV 98 (143)
Q Consensus 89 LqAE~DR~~l 98 (143)
+|+|.|...-
T Consensus 92 mQEE~dakA~ 101 (190)
T PF06936_consen 92 MQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677776643
No 54
>PRK04032 hypothetical protein; Provisional
Probab=23.43 E-value=93 Score=24.73 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=10.8
Q ss_pred CCCCcccccccC
Q 032331 28 GGFAPVRYARRI 39 (143)
Q Consensus 28 GGY~pi~ykR~l 39 (143)
+|+.||++.|++
T Consensus 15 ~~~~piD~g~~~ 26 (159)
T PRK04032 15 GGGTPIDFGKTF 26 (159)
T ss_pred CCCccccCCCcC
Confidence 678999999999
No 55
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.04 E-value=2.4e+02 Score=20.63 Aligned_cols=12 Identities=17% Similarity=0.014 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhh
Q 032331 54 FGAFSYGMYQVG 65 (143)
Q Consensus 54 ~~~~~~G~y~~~ 65 (143)
+.++...||.+.
T Consensus 24 lvii~~i~yf~~ 35 (106)
T PRK05585 24 LVVFFAIFYFLI 35 (106)
T ss_pred HHHHHHHHHHHh
Confidence 344444455443
No 56
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=22.82 E-value=1.8e+02 Score=21.76 Aligned_cols=23 Identities=13% Similarity=-0.037 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 032331 43 GPSAMALFLAAFGAFSYGMYQVG 65 (143)
Q Consensus 43 g~sg~~~~~~~~~~~~~G~y~~~ 65 (143)
.+-|..+++.++++.+|..-+..
T Consensus 120 ~~~G~~i~~~v~~~i~Y~l~~~~ 142 (154)
T PF09835_consen 120 FLLGSLILGIVLGIISYFLVYFL 142 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777776654443
No 57
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=22.75 E-value=3.8e+02 Score=21.01 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhH
Q 032331 45 SAMALFLAAFGAFSYGMYQVGKGN 68 (143)
Q Consensus 45 sg~~~~~~~~~~~~~G~y~~~~~~ 68 (143)
.+..+++++++++.+|+|..+...
T Consensus 2 ~~l~~vllla~~~~~g~y~~G~~~ 25 (162)
T PF10721_consen 2 KQLAIVLLLAAALLWGAYAHGYAV 25 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH
Confidence 345666667777788887655443
No 58
>PLN02985 squalene monooxygenase
Probab=22.00 E-value=1.7e+02 Score=26.64 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHhhhhhhhhh
Q 032331 43 GPSAMALFLAAFGAFSYGMYQVGKGNKIRR---ALKEEKYAARRAILPMLQAE 92 (143)
Q Consensus 43 g~sg~~~~~~~~~~~~~G~y~~~~~~re~r---~~~~E~~~ar~al~PlLqAE 92 (143)
-+++.+++..++++..|+.|....-...=. +.-.=--.|-..++|+|-+|
T Consensus 438 ~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e 490 (514)
T PLN02985 438 NPRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLALKMLVPHLKAE 490 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 367899999999999999998754332111 11111345667889999999
No 59
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=21.46 E-value=6e+02 Score=22.84 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 032331 38 RIPTKGPSAMALFLAAFGAFSYGMYQVGK 66 (143)
Q Consensus 38 ~lP~rg~sg~~~~~~~~~~~~~G~y~~~~ 66 (143)
+..+.|+-.+.++.+++...+.|+|.+.+
T Consensus 31 ~~~~~g~~l~~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 31 SKNRTGLVLSAVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred CCCCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33455665555555555666677776644
No 60
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=21.23 E-value=1.8e+02 Score=26.61 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 032331 41 TKGPSAMALFLAAFGAFSYGMYQVGKGNKIRRALKEEKY 79 (143)
Q Consensus 41 ~rg~sg~~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~ 79 (143)
+|-.-|.+++++++.+.+|+.|.+.+....+. +..+|.
T Consensus 30 ~riiiGa~Vl~iIii~~~~~~Y~~~~~~~~~e-Le~aK~ 67 (416)
T PF04415_consen 30 KRIIIGAAVLIIIIIFIVYNIYYFLQNQPAQE-LENAKA 67 (416)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 45667888899999999999988776554443 544443
No 61
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=21.04 E-value=2.5e+02 Score=23.33 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhHHH-------HHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHhHHHHHHhccC
Q 032331 56 AFSYGMYQVGKGNKI-------RRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKD 114 (143)
Q Consensus 56 ~~~~G~y~~~~~~re-------~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~e~E~eiMkd 114 (143)
++++|+|.+.....- .+....++ .+-.-=+|.--++.|.+.++......+.=.++|++
T Consensus 138 l~AIGL~~LLe~a~~~~~~~~~~~~~~l~~-l~~~l~ls~~kv~kDL~lYrsnLeKm~qA~el~ee 202 (216)
T PF11264_consen 138 LFAIGLFRLLELAGADLVKDEEKRPEALEK-LSEALGLSKEKVEKDLDLYRSNLEKMAQAKELMEE 202 (216)
T ss_pred HHHHHHHHHHHhcCcccccChhhHHHHHHH-HHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 466788887655443 33333333 34444567788999999888888777777777765
No 62
>PRK11677 hypothetical protein; Provisional
Probab=20.99 E-value=3.1e+02 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 032331 69 KIRRALKEEKYAARRAILP 87 (143)
Q Consensus 69 re~r~~~~E~~~ar~al~P 87 (143)
++.+.++.|-..++..|.=
T Consensus 29 ~~q~~le~eLe~~k~ele~ 47 (134)
T PRK11677 29 RQQQALQYELEKNKAELEE 47 (134)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555543
No 63
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.91 E-value=5.5e+02 Score=24.25 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHH
Q 032331 48 ALFLAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFV 98 (143)
Q Consensus 48 ~~~~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR~~l 98 (143)
.+++..+.+...|-|.+++.|+.-.+.-.+++. -|.-|-.||+.-.-|
T Consensus 217 ~iLv~lili~v~gcw~ay~Qnk~akehv~km~k---dle~Lq~aEqsl~dl 264 (575)
T KOG4403|consen 217 FILVVLILIGVGGCWFAYRQNKKAKEHVNKMMK---DLEGLQRAEQSLEDL 264 (575)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344444555555555556666655544444332 355667777766544
No 64
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.80 E-value=4.9e+02 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 032331 43 GPSAMALFLAAFGAFSYGMYQ 63 (143)
Q Consensus 43 g~sg~~~~~~~~~~~~~G~y~ 63 (143)
..||.++|..++.-..+.+-.
T Consensus 101 YisGf~LFL~lvI~R~~~ll~ 121 (216)
T KOG1962|consen 101 YISGFVLFLSLVIRRLHTLLR 121 (216)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 788888888777766666543
No 65
>PRK10927 essential cell division protein FtsN; Provisional
Probab=20.73 E-value=26 Score=30.91 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------------HHHHHHHhhh-------h--------------hhhh
Q 032331 46 AMALFLAAFGAFSYGMYQVGKGNKIRRALKE-------------EKYAARRAIL-------P--------------MLQA 91 (143)
Q Consensus 46 g~~~~~~~~~~~~~G~y~~~~~~re~r~~~~-------------E~~~ar~al~-------P--------------lLqA 91 (143)
=.++.++++.+++.|||.+..++++..+..- |++|.-|--+ | --+.
T Consensus 36 m~alAvavlv~fiGGLyFith~k~~e~~~~~~~~~~~ngLPPKPEErWrYIKELEnRqv~V~~pteps~gg~v~~~~qLT 115 (319)
T PRK10927 36 MVAIAAAVLVTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEPSAGGEVKTPEQLT 115 (319)
T ss_pred HHHHHHHHHHHHhhheEEEecCCCCCCcccccCCCCCCCCCCCcchhhHHHHHHhccCCCCCCCCCCCCCCCcCCccccC
Confidence 3556666677778899988876654332222 5566555321 1 2235
Q ss_pred hHhHHHHHHHHHhHHHHHHhccCC
Q 032331 92 EEDERFVKEWKKYLEYEAEVMKDV 115 (143)
Q Consensus 92 E~DR~~lr~~~~~~e~E~eiMkdV 115 (143)
++-|.+|.++.+....--.=++.|
T Consensus 116 ~EQrQlLeqmqaDmrq~~t~l~ev 139 (319)
T PRK10927 116 PEQRQLLEQMQADMRQQPTQLVEV 139 (319)
T ss_pred HHHHHHHHHHHHHHhcCCCccccc
Confidence 666777777776654333333333
No 66
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=20.53 E-value=2.8e+02 Score=24.46 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhh
Q 032331 29 GFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVGKG-NKIRRALKEEKYAARRAI 85 (143)
Q Consensus 29 GY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~~~-~re~r~~~~E~~~ar~al 85 (143)
.+...+..+...++-+....++++++++..+||+.+-.. .++++..+.+..-++.++
T Consensus 151 ~~r~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~a~~~~~~a~~~~ 208 (414)
T PF06864_consen 151 ELRRARLTPVSSRRQLVLAAALVVLALAGGYGWWYWQAQQEEARRAAAAAARAARAAL 208 (414)
T ss_pred cccccccCCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
No 67
>PTZ00367 squalene epoxidase; Provisional
Probab=20.42 E-value=3.2e+02 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhh
Q 032331 43 GPSAMALFLAAFGAFSYGMYQVGKG 67 (143)
Q Consensus 43 g~sg~~~~~~~~~~~~~G~y~~~~~ 67 (143)
-+++.+++..+++++.||.|.....
T Consensus 452 ~~~p~~l~~h~~~v~~~~~~~~~~~ 476 (567)
T PTZ00367 452 DPSPGGLLFHYFSVALYGVLNLIME 476 (567)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999999987654
Done!