Query 032331
Match_columns 143
No_of_seqs 101 out of 158
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 65.9 2.4 8.1E-05 24.0 1.2 11 22-33 8-18 (28)
2 2knc_B Integrin beta-3; transm 64.2 12 0.0004 25.3 4.7 19 118-136 56-77 (79)
3 3pjs_K KCSA, voltage-gated pot 35.6 52 0.0018 24.0 4.6 21 29-50 83-103 (166)
4 3v2d_P 50S ribosomal protein L 34.8 25 0.00085 26.5 2.7 18 29-46 50-69 (150)
5 2zjr_I 50S ribosomal protein L 34.5 18 0.00061 27.2 1.9 17 28-46 51-67 (156)
6 3r8s_L 50S ribosomal protein L 33.6 26 0.0009 26.1 2.6 34 7-46 32-67 (143)
7 2knc_B Integrin beta-3; transm 33.1 1.1E+02 0.0037 20.4 7.1 26 49-74 14-44 (79)
8 2d7v_A Hypothetical protein VC 31.7 66 0.0023 23.4 4.6 27 41-67 60-86 (162)
9 1mke_A WIP - N-WAsp, fusion pr 30.8 24 0.00082 26.6 2.0 21 23-45 1-21 (152)
10 4f6r_C Stathmin-like domain R1 25.2 43 0.0015 23.3 2.4 19 96-114 64-82 (87)
11 1jmq_A YAP65, 65 kDa YES-assoc 24.7 39 0.0013 19.8 1.8 24 116-139 11-44 (46)
12 2l2l_A Transcriptional repress 21.8 92 0.0031 19.0 3.1 20 92-111 4-24 (43)
13 3p0l_A Steroidogenic acute reg 20.9 84 0.0029 23.3 3.5 32 90-121 5-36 (221)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=65.88 E-value=2.4 Score=24.04 Aligned_cols=11 Identities=55% Similarity=1.123 Sum_probs=8.2
Q ss_pred ccCCCCCCCCcc
Q 032331 22 QDGPPPGGFAPV 33 (143)
Q Consensus 22 QDmPP~GGY~pi 33 (143)
=|+||+| |+-|
T Consensus 8 WDvpP~G-yE~v 18 (28)
T 1jmt_B 8 WDVPPPG-FEHI 18 (28)
T ss_dssp BTCCCTT-CTTS
T ss_pred cCCCCCC-cccc
Confidence 4999987 8843
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.19 E-value=12 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=10.8
Q ss_pred cccc-cccccC--CCccCCCCC
Q 032331 118 WKVG-ENVYNS--GRWMPPASG 136 (143)
Q Consensus 118 WkvG-e~vY~t--~rw~~P~~~ 136 (143)
|+.+ -|+|.+ ..|..|+..
T Consensus 56 w~~~~NPlyk~~ttt~~nP~~~ 77 (79)
T 2knc_B 56 WDTANNPLYKEATSTFTNITYR 77 (79)
T ss_dssp HTTTTCCHHHHCSCCSCCCSCC
T ss_pred cccCCCCCccCCccCccCCCcC
Confidence 4444 467743 567667654
No 3
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=35.60 E-value=52 Score=24.02 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=8.8
Q ss_pred CCCcccccccCCCCCCCHHHHH
Q 032331 29 GFAPVRYARRIPTKGPSAMALF 50 (143)
Q Consensus 29 GY~pi~ykR~lP~rg~sg~~~~ 50 (143)
||+.| +-.+...+.+....++
T Consensus 83 GyGDi-~P~t~~~r~~~~~~~l 103 (166)
T 3pjs_K 83 GYGDL-YPVTLWGRLVAVVVMV 103 (166)
T ss_dssp CCSSS-CCCSSTTTTTTHHHHH
T ss_pred cCCCC-CCCCHhHHHHHHHHHH
Confidence 55555 1223333444444443
No 4
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=34.78 E-value=25 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.1
Q ss_pred CCC--cccccccCCCCCCCH
Q 032331 29 GFA--PVRYARRIPTKGPSA 46 (143)
Q Consensus 29 GY~--pi~ykR~lP~rg~sg 46 (143)
||+ ..++.|.+|++||+-
T Consensus 50 gFEGGQ~Pl~rRlPK~GF~~ 69 (150)
T 3v2d_P 50 RFEGGRSTTLMRLPKRGMQG 69 (150)
T ss_dssp TCCTTSCCTTTTSCCCSCCC
T ss_pred cccCCCCccEEEcCccCccC
Confidence 464 567889999999874
No 5
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=34.49 E-value=18 Score=27.22 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.5
Q ss_pred CCCCcccccccCCCCCCCH
Q 032331 28 GGFAPVRYARRIPTKGPSA 46 (143)
Q Consensus 28 GGY~pi~ykR~lP~rg~sg 46 (143)
||+-|+. |.+|++||+-
T Consensus 51 GGQ~Pl~--rrlPK~GF~n 67 (156)
T 2zjr_I 51 GGRSRLI--ARLPKRGFNN 67 (156)
T ss_dssp CCSSSST--TTSCCCCCCC
T ss_pred cCcCCCe--EecCCCCCcC
Confidence 7776654 8999999984
No 6
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=33.56 E-value=26 Score=26.08 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred hcCCCccccCCCCCcccCCCCCCCC--cccccccCCCCCCCH
Q 032331 7 RKKPGMASVKDMPVLQDGPPPGGFA--PVRYARRIPTKGPSA 46 (143)
Q Consensus 7 ~~~~~m~s~~~~~~~QDmPP~GGY~--pi~ykR~lP~rg~sg 46 (143)
||.+|-+|=. +--+++ ||+ ..++.|.+|++||+-
T Consensus 32 rG~KGqkaRs-----G~~~~~-gFEGGQ~Pl~rRlPK~GF~~ 67 (143)
T 3r8s_L 32 RGHKGQKSRS-----GGGVRR-GFEGGQMPLYRRLPKFGFTS 67 (143)
T ss_dssp SCSSSTTTST-----TCCCCT-TCCTTSCCHHHHSCCCCCCC
T ss_pred CCCCCCcCCC-----CCCCCC-ccccCCCccEEEccccccCC
Confidence 5666665531 111232 465 667889999999874
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.09 E-value=1.1e+02 Score=20.41 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH-----HHhhhhHHHHHHH
Q 032331 49 LFLAAFGAFSYGM-----YQVGKGNKIRRAL 74 (143)
Q Consensus 49 ~~~~~~~~~~~G~-----y~~~~~~re~r~~ 74 (143)
+++.++|+...|+ |++.....-+||-
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~DrrE~ 44 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDRKEF 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454554 4444444444443
No 8
>2d7v_A Hypothetical protein VCA0330; MCSG, structural genomics, hypothetial PROT protein structure initiative; 1.97A {Vibrio cholerae o1 biovar eltor} SCOP: d.227.1.1
Probab=31.72 E-value=66 Score=23.38 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 032331 41 TKGPSAMALFLAAFGAFSYGMYQVGKG 67 (143)
Q Consensus 41 ~rg~sg~~~~~~~~~~~~~G~y~~~~~ 67 (143)
..|+++.-+|++.++.|.-..+.....
T Consensus 60 ~~g~nPeeLllaalaaC~~~~~~~~a~ 86 (162)
T 2d7v_A 60 EANVDPEEAFVAALSSCHMLVFLSIAA 86 (162)
T ss_dssp TTSBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999888888777665543
No 9
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=30.80 E-value=24 Score=26.62 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=16.3
Q ss_pred cCCCCCCCCcccccccCCCCCCC
Q 032331 23 DGPPPGGFAPVRYARRIPTKGPS 45 (143)
Q Consensus 23 DmPP~GGY~pi~ykR~lP~rg~s 45 (143)
|+|||--|-| ..||.|++..+
T Consensus 1 ~~~~~~~~~~--~~~~~ps~l~~ 21 (152)
T 1mke_A 1 DLPPPEPYVQ--TTKSYPSKLAR 21 (152)
T ss_dssp CCCCCCCCCC--CCCCCSTTTTC
T ss_pred CCCCCCCccc--ccccCCchhhc
Confidence 8999998865 46999987554
No 10
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=25.19 E-value=43 Score=23.31 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHhccC
Q 032331 96 RFVKEWKKYLEYEAEVMKD 114 (143)
Q Consensus 96 ~~lr~~~~~~e~E~eiMkd 114 (143)
..|+++.+.++.|.++.||
T Consensus 64 ~~L~~Laekreh~~EV~k~ 82 (87)
T 4f6r_C 64 AMLERLQEKDKHAEEVRKN 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4688899999999998876
No 11
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=24.65 E-value=39 Score=19.79 Aligned_cols=24 Identities=21% Similarity=0.678 Sum_probs=16.1
Q ss_pred CCcccc-----cccc---cCC--CccCCCCCCCC
Q 032331 116 PGWKVG-----ENVY---NSG--RWMPPASGELR 139 (143)
Q Consensus 116 pGWkvG-----e~vY---~t~--rw~~P~~~el~ 139 (143)
+||++. ...| ++. .|.+|....|+
T Consensus 11 ~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~~~ 44 (46)
T 1jmq_A 11 AGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44 (46)
T ss_dssp TTBCCBCCSSCCCBEEETTTTEEESSCTTTSSSC
T ss_pred cCcEEEEcCCCceEEEEecCCceeecCCCchhhc
Confidence 699873 3333 344 89999887665
No 12
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.81 E-value=92 Score=18.98 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=10.6
Q ss_pred hHhHHHHHHHHHhH-HHHHHh
Q 032331 92 EEDERFVKEWKKYL-EYEAEV 111 (143)
Q Consensus 92 E~DR~~lr~~~~~~-e~E~ei 111 (143)
|+-...++++|..+ .+|+++
T Consensus 4 ~ere~~i~~LreeLR~EEaKL 24 (43)
T 2l2l_A 4 EERERMIKQLKEELRLEEAKL 24 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666655 455554
No 13
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=20.90 E-value=84 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.392 Sum_probs=26.2
Q ss_pred hhhHhHHHHHHHHHhHHHHHHhccCCCCcccc
Q 032331 90 QAEEDERFVKEWKKYLEYEAEVMKDVPGWKVG 121 (143)
Q Consensus 90 qAE~DR~~lr~~~~~~e~E~eiMkdVpGWkvG 121 (143)
..|.|.+|+++-.+..++=-.|..+-.||+.-
T Consensus 5 ~~~~~~~y~~~~~~~~~~~l~~~~~~~gW~~~ 36 (221)
T 3p0l_A 5 YSDQELAYLQQGEEAMQKALGILSNQEGWKKE 36 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Confidence 45788999988888877777788888999874
Done!