Query 032331
Match_columns 143
No_of_seqs 101 out of 158
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 20:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032331.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032331hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 46.5 3 0.00022 22.8 0.8 18 121-140 9-26 (31)
2 d1lqla_ d.227.1.1 (A:) Hypothe 36.4 32 0.0024 22.5 5.2 42 13-65 19-60 (141)
3 d1a6qa1 a.159.1.1 (A:297-368) 32.1 6.3 0.00046 25.0 0.7 12 20-31 45-56 (72)
4 d1ui5a2 a.121.1.1 (A:80-212) A 31.9 24 0.0017 23.7 3.9 58 51-108 75-132 (133)
5 d1e0na_ b.72.1.1 (A:) Hypothet 25.7 8 0.00058 20.2 0.3 12 116-127 1-16 (27)
6 d1vlaa_ d.227.1.2 (A:) Hypothe 19.8 66 0.0048 20.6 4.3 36 20-65 27-63 (144)
7 d1em2a_ d.129.3.2 (A:) Lipid t 18.6 36 0.0026 23.0 2.8 30 91-120 3-32 (214)
8 d1jmqa_ b.72.1.1 (A:) Yap65 ww 17.2 24 0.0017 20.0 1.2 24 116-139 11-44 (46)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 15.5 56 0.004 17.4 2.4 16 48-63 7-22 (34)
10 d1hsma_ a.21.1.1 (A:) High mob 13.5 39 0.0028 20.0 1.6 14 38-51 1-14 (79)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=46.45 E-value=3 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=12.6
Q ss_pred ccccccCCCccCCCCCCCCC
Q 032331 121 GENVYNSGRWMPPASGELRP 140 (143)
Q Consensus 121 Ge~vY~t~rw~~P~~~el~~ 140 (143)
|+ |||. .|-+|...|++.
T Consensus 9 G~-iYH~-~f~ppp~~ei~~ 26 (31)
T d1zaka2 9 GK-IYHL-KYSPPENEEIAS 26 (31)
T ss_dssp CC-EEES-SSSCCCSSGGGG
T ss_pred Cc-EeEE-ecCCCCCHHHHH
Confidence 54 9999 776776666654
No 2
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=36.44 E-value=32 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred cccCCCCCcccCCCCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 032331 13 ASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVG 65 (143)
Q Consensus 13 ~s~~~~~~~QDmPP~GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~ 65 (143)
++..+.-..=|.||.+| ..|+++.-+|++.++.|.-..+...
T Consensus 19 ~~~~~~~i~~d~~~~~~-----------~~G~~P~elllaaLa~C~~~~~~~~ 60 (141)
T d1lqla_ 19 AISDQFQITLDARPKHT-----------AKGFGPLAALLSGLAACELATANLM 60 (141)
T ss_dssp EEETTEEEEECCSCTTT-----------CSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCeEEEecCCCCCC-----------CCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 33444556678888763 3589999998888877776655543
No 3
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.07 E-value=6.3 Score=24.98 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=9.5
Q ss_pred CcccCCCCCCCC
Q 032331 20 VLQDGPPPGGFA 31 (143)
Q Consensus 20 ~~QDmPP~GGY~ 31 (143)
-.+++||-||..
T Consensus 45 ~Ip~LPPGGGL~ 56 (72)
T d1a6qa1 45 NIPSLPPGGELA 56 (72)
T ss_dssp TCSSCCTTTGGG
T ss_pred CCCCCCCCccHH
Confidence 378999999864
No 4
>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=31.91 E-value=24 Score=23.68 Aligned_cols=58 Identities=10% Similarity=-0.081 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHhHHHH
Q 032331 51 LAAFGAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYE 108 (143)
Q Consensus 51 ~~~~~~~~~G~y~~~~~~re~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~e~E 108 (143)
|-++.....|.-.+.+.-..+..+...-....-.++|-|.++..|.+++++-...++|
T Consensus 75 A~~lva~~~G~~~lsr~~~~~~~L~~rl~~~w~llLp~l~~~~~~~~~~~~~~r~~~~ 132 (133)
T d1ui5a2 75 AHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQE 132 (133)
T ss_dssp HHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHhccccCCCchHHHHHHHHhhhcc
Confidence 3334444455555544433333332223334455699999999999999998877766
No 5
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.66 E-value=8 Score=20.23 Aligned_cols=12 Identities=42% Similarity=1.329 Sum_probs=9.2
Q ss_pred CCccc----ccccccC
Q 032331 116 PGWKV----GENVYNS 127 (143)
Q Consensus 116 pGWkv----Ge~vY~t 127 (143)
|||+. |.|+|-+
T Consensus 1 pgweiihengrpmyyn 16 (27)
T d1e0na_ 1 PGWEIIHENGRPLYYN 16 (27)
T ss_dssp CCEEEEESSSSEEEEE
T ss_pred CCceeeecCCceeeee
Confidence 78987 7888844
No 6
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=19.81 E-value=66 Score=20.55 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=25.2
Q ss_pred CcccCCCC-CCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 032331 20 VLQDGPPP-GGFAPVRYARRIPTKGPSAMALFLAAFGAFSYGMYQVG 65 (143)
Q Consensus 20 ~~QDmPP~-GGY~pi~ykR~lP~rg~sg~~~~~~~~~~~~~G~y~~~ 65 (143)
+.=|.|+. || ...||++.-+|++.++.|.-......
T Consensus 27 i~~D~p~~~GG----------~~~g~~P~elllaala~C~~~~~~~~ 63 (144)
T d1vlaa_ 27 VLMDTKEEVGG----------KDAAPRPLELVLTGLMGCTGMDVVSI 63 (144)
T ss_dssp EEECCCGGGTC----------CSCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCC----------CCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44477765 44 36789999999888888876555544
No 7
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.59 E-value=36 Score=23.04 Aligned_cols=30 Identities=10% Similarity=0.402 Sum_probs=24.7
Q ss_pred hhHhHHHHHHHHHhHHHHHHhccCCCCccc
Q 032331 91 AEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120 (143)
Q Consensus 91 AE~DR~~lr~~~~~~e~E~eiMkdVpGWkv 120 (143)
+.+++.|.++.++..+.=.+|+.+-.||+.
T Consensus 3 s~~~~~y~~~~~e~~~~~~~il~~~~~W~~ 32 (214)
T d1em2a_ 3 SAQEREYIRQGKEATAVVDQILAQEENWKF 32 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTGGGCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 346777888888888888888888899986
No 8
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.16 E-value=24 Score=20.05 Aligned_cols=24 Identities=21% Similarity=0.739 Sum_probs=16.2
Q ss_pred CCcccc-----cccc-----cCCCccCCCCCCCC
Q 032331 116 PGWKVG-----ENVY-----NSGRWMPPASGELR 139 (143)
Q Consensus 116 pGWkvG-----e~vY-----~t~rw~~P~~~el~ 139 (143)
+||+.+ ...| .+..|..|.....+
T Consensus 11 ~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~~~~ 44 (46)
T d1jmqa_ 11 AGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44 (46)
T ss_dssp TTBCCBCCSSCCCBEEETTTTEEESSCTTTSSSC
T ss_pred CCceEEECCCCCEEEEECCCCCEecCCCCccccC
Confidence 799984 5444 22689999876544
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=15.51 E-value=56 Score=17.41 Aligned_cols=16 Identities=25% Similarity=0.467 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032331 48 ALFLAAFGAFSYGMYQ 63 (143)
Q Consensus 48 ~~~~~~~~~~~~G~y~ 63 (143)
++...++|+++||+-.
T Consensus 7 avvvmvagits~glv~ 22 (34)
T d2p7tc1 7 AVVVMVAGITSFGLVT 22 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEEEEeccchhhhHH
Confidence 4556678888888754
No 10
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=13.53 E-value=39 Score=20.02 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=10.9
Q ss_pred cCCCCCCCHHHHHH
Q 032331 38 RIPTKGPSAMALFL 51 (143)
Q Consensus 38 ~lP~rg~sg~~~~~ 51 (143)
|.|+|-+|++.+|.
T Consensus 1 NaPKrP~say~~f~ 14 (79)
T d1hsma_ 1 NAPKRPPSAFFLFC 14 (79)
T ss_dssp CCCCCCCCSHHHHH
T ss_pred CcCCCCCcHHHHHH
Confidence 67899888876665
Done!