BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032332
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMV4|MED30_ARATH Mediator of RNA polymerase II transcription subunit 30
OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1
Length = 189
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 107/157 (68%), Gaps = 20/157 (12%)
Query: 1 MNDELCNPTLWSTTTT-----TTTTSTSNGVVHADSTS-DANNHHLDSSGGSG-----NS 49
MNDELCNP+LWST+ T TTT S + +V AD+ + D +HH +S+GG G NS
Sbjct: 39 MNDELCNPSLWSTSATPSSAATTTGSNGSALVSADAAAIDGTSHHSESAGGGGGGGSGNS 98
Query: 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEM---VSSPVDSVSRSDEVEIDKLEERA 106
LDEA RYK SV +LRAVL AIPNS KAK+ EM + SP E EI+KLEE+A
Sbjct: 99 VLDEASLRYKNSVTSLRAVLAAIPNSQKAKASEMQNGLGSP------ESEDEIEKLEEQA 152
Query: 107 SLLRKELANKNKYLKRLIDQLRDLITDISTWQSPCSV 143
LR E+A KN ++K LID+LR+LI DISTWQSPCSV
Sbjct: 153 LSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189
>sp|Q9CQI9|MED30_MOUSE Mediator of RNA polymerase II transcription subunit 30 OS=Mus
musculus GN=Med30 PE=1 SV=1
Length = 178
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 103 EERASLLR--KELANKNKYLKRLIDQLRDLITDIS 135
EER ++ K+L KN+ LK+++DQLR+LI DI+
Sbjct: 137 EERREIVEVNKKLKQKNQQLKQIMDQLRNLIWDIN 171
>sp|Q96HR3|MED30_HUMAN Mediator of RNA polymerase II transcription subunit 30 OS=Homo
sapiens GN=MED30 PE=1 SV=1
Length = 178
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 103 EERASL--LRKELANKNKYLKRLIDQLRDLITDIS 135
EER + + K+L KN+ LK+++DQLR+LI DI+
Sbjct: 137 EERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDIN 171
>sp|Q0IHI6|MED30_XENLA Mediator of RNA polymerase II transcription subunit 30 OS=Xenopus
laevis GN=med30 PE=2 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 103 EERASLLR--KELANKNKYLKRLIDQLRDLITDIST 136
EE+ +L K+L KN+ LK+++DQLR+LI DI++
Sbjct: 143 EEKREILEVNKKLKQKNQQLKQIMDQLRNLIWDINS 178
>sp|C0QU74|PDXJ_PERMH Pyridoxine 5'-phosphate synthase OS=Persephonella marina (strain
DSM 14350 / EX-H1) GN=pdxJ PE=3 SV=1
Length = 246
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 9 TLWSTTTTTTTTSTSNGVVHADSTSDANNHHLDSSGGSGNSALDEARHRYKTSVAALRAV 68
T+ T ++ D+ +D HL ++ RH + V LRAV
Sbjct: 12 TVREARKTYEPDPVKGAIIARDAGADQITFHLR----------EDRRHIQDSDVEKLRAV 61
Query: 69 LTAIP-NSHKAKSFEMVSSPVDSVSRSDEVEI--DKLEERASLLRKELANKNKYLKRLID 125
+T IP N A + EM + + D V I +K EE + ++ + YL+ I
Sbjct: 62 ITEIPLNMEMAATEEMKQIAIR--IKPDRVTIVPEKREEITTEGGLDVVSMTDYLREFIK 119
Query: 126 QLRDLITDISTWQSPCS 142
+L+D +++T+ P
Sbjct: 120 ELKDNGINVATFVDPVE 136
>sp|Q03746|CR1FA_BACTA Pesticidal crystal protein cry1Fa OS=Bacillus thuringiensis subsp.
aizawai GN=cry1Fa PE=2 SV=1
Length = 1174
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 14 TTTTTTTSTSNGVVHADSTSDANNHHLDSSGGSGNSALDEARHRYKTSVAALRAVLTAIP 73
T T S S+ V AD+ S N ++D +A EA + + + A+ A+ T+I
Sbjct: 566 TAFTFPMSQSSFTVGADTFSSGNEVYIDRFELIPVTATFEAEYDLERAQKAVNALFTSI- 624
Query: 74 NSHKAKS------FEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127
N K+ + VS+ VD +S DE +D+ ++EL+ K K+ KRL D+
Sbjct: 625 NQIGIKTDVTDYHIDQVSNLVDCLS--DEFCLDE--------KRELSEKVKHAKRLSDE- 673
Query: 128 RDLITD 133
R+L+ D
Sbjct: 674 RNLLQD 679
>sp|Q6PC45|MED30_DANRE Mediator of RNA polymerase II transcription subunit 30 OS=Danio
rerio GN=med30 PE=2 SV=1
Length = 174
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 103 EERASLLR--KELANKNKYLKRLIDQLRDLITDIST 136
EER +L K+L KN+ LK ++DQLR+LI +I++
Sbjct: 133 EERREVLEVNKKLKQKNQQLKMIMDQLRNLIWEINS 168
>sp|Q6CWV1|DOT1_KLULA Histone-lysine N-methyltransferase, H3 lysine-79 specific
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DOT1 PE=3
SV=1
Length = 572
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 67 AVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKL 102
AVL PN++K K E+V S D+ RSD+ +K+
Sbjct: 265 AVLLYFPNTYKTKGQELVRSLNDAFERSDDQSFEKI 300
>sp|O84947|SSEC_SALTY Secreted effector protein SseC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=sseC PE=1 SV=1
Length = 484
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 1 MNDELCNPTLWSTTTTTTTTSTSNGVVHADSTSDANNHHLDSSGGSGNSA-LDEARHRYK 59
MN N + T T SN + + H ++S+ G GN+A L + +
Sbjct: 1 MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTFGDGNAACLLSGKISLQ 60
Query: 60 TSVAALRAVLTAIPNSHKAKSFE------------MVSSPVDSVSRSDEVEIDKLEERAS 107
+ AL+ +L A+P +HK S M++S + +V ++ + + ERA+
Sbjct: 61 EASNALKQLLDAVPGNHKRPSLPDFLQTNPAVLSMMMTSLILNVFGNNAQSLCQQLERAT 120
Query: 108 LLRKELANKNKYLKRLIDQLRDLI 131
++ L +NK +K +Q++ I
Sbjct: 121 EVQNAL--RNKQVKEYQEQIQKAI 142
>sp|A8E1C4|DEN_MUHVK Deneddylase M48 OS=Murid herpesvirus 1 (strain K181) GN=M48 PE=3
SV=1
Length = 2147
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133
EI KL RK+++++ +K LI+ + D+ITD
Sbjct: 651 EIKKLRAEYETARKQISDEEMRIKELIENMEDMITD 686
>sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2
Length = 1316
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLR 110
L E + Y+ V AL I H K E + + R + ++ E R + L
Sbjct: 954 LAEKKRNYQQEVEALLKASYKINEYHDLKKGERLDD-IQEKQRLSDSQLQSCEARKNELA 1012
Query: 111 KELANKNKYLKRLIDQLRDLITD 133
EL N+NK L R DQLR I D
Sbjct: 1013 GEL-NRNKDLMRNQDQLRRNIED 1034
>sp|A8IQE0|CCD39_CHLRE Coiled-coil domain-containing protein 39 OS=Chlamydomonas
reinhardtii GN=CCDC39 PE=1 SV=1
Length = 894
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLR 110
LD AR R+ V R + N S E +S ++++ R +E + + + LL+
Sbjct: 356 LDAARKRF---VVLKRKLENEFGN---LDSMEAKASELEAMRRGEEARLKAILKEHELLK 409
Query: 111 KELANKNKYLKRLIDQLRDLITDISTWQ 138
KE +++ L L + R+LI++IS Q
Sbjct: 410 KEQYKRSQVLFDLRQKERELISEISGGQ 437
>sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 OS=Homo sapiens GN=SYCP1 PE=1 SV=2
Length = 976
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 92 SRSDEVE--IDKLEERASLLRKELANKNKYLKRL 123
+ DEV+ +DK EE + LRK++ NKNKY++ L
Sbjct: 585 QKRDEVKCKLDKSEENCNNLRKQVENKNKYIEEL 618
>sp|Q7ZVS9|MYCB_DANRE Transcriptional regulator Myc-B OS=Danio rerio GN=mycb PE=2 SV=1
Length = 396
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 53 EARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKE 112
+ R+ K S ALR V+ + N+ KA ++ + ++ E E +R L+++
Sbjct: 324 QRRNELKLSFFALRDVIPDVANNEKAAKVVILKKATECIASMQEDE-----QRLISLKEQ 378
Query: 113 LANKNKYLKRLIDQL 127
L K ++LK+ ++QL
Sbjct: 379 LRRKCEHLKQRLEQL 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.121 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,647,693
Number of Sequences: 539616
Number of extensions: 1796550
Number of successful extensions: 16752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 13720
Number of HSP's gapped (non-prelim): 2332
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)