Query 032332
Match_columns 143
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 12:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11315 Med30: Mediator compl 96.0 0.018 4E-07 45.4 5.6 38 98-135 105-142 (150)
2 PF07544 Med9: RNA polymerase 90.6 2 4.4E-05 30.0 7.2 52 48-123 27-78 (83)
3 PRK11546 zraP zinc resistance 88.8 3.7 8.1E-05 32.3 8.2 60 50-118 51-110 (143)
4 PF11221 Med21: Subunit 21 of 86.9 2.5 5.5E-05 31.9 6.0 39 97-135 104-142 (144)
5 PF05529 Bap31: B-cell recepto 85.5 2.3 5E-05 32.7 5.3 38 94-131 151-188 (192)
6 KOG2829 E2F-like protein [Tran 85.2 2 4.4E-05 38.2 5.4 35 94-128 129-163 (326)
7 COG4387 Mu-like prophage prote 85.2 0.82 1.8E-05 36.5 2.7 21 50-70 82-102 (139)
8 PF07106 TBPIP: Tat binding pr 85.1 3 6.4E-05 31.5 5.6 42 93-134 68-109 (169)
9 PLN02678 seryl-tRNA synthetase 84.2 2.5 5.5E-05 37.9 5.7 72 50-134 37-108 (448)
10 PF02403 Seryl_tRNA_N: Seryl-t 84.2 1.6 3.4E-05 30.6 3.5 72 50-134 33-104 (108)
11 PLN02320 seryl-tRNA synthetase 84.1 3 6.5E-05 38.3 6.2 70 51-134 98-167 (502)
12 smart00150 SPEC Spectrin repea 83.8 6.5 0.00014 24.7 6.0 41 93-133 27-67 (101)
13 PF11831 Myb_Cef: pre-mRNA spl 83.6 12 0.00027 30.5 8.9 71 48-120 50-130 (231)
14 PRK05431 seryl-tRNA synthetase 83.5 3.2 6.9E-05 36.4 5.8 72 50-134 32-103 (425)
15 PF11262 Tho2: Transcription f 82.9 8.6 0.00019 32.2 7.9 64 55-133 26-89 (298)
16 PF01920 Prefoldin_2: Prefoldi 81.3 3.7 8E-05 27.7 4.4 44 88-131 60-103 (106)
17 PF07798 DUF1640: Protein of u 80.9 14 0.00031 28.5 8.0 26 50-75 48-73 (177)
18 TIGR00414 serS seryl-tRNA synt 79.1 6.5 0.00014 34.4 6.2 73 50-134 34-106 (418)
19 PF10018 Med4: Vitamin-D-recep 77.3 8.3 0.00018 30.1 5.8 37 98-134 23-59 (188)
20 COG0172 SerS Seryl-tRNA synthe 77.0 9.6 0.00021 34.6 6.8 74 50-135 33-106 (429)
21 KOG0994 Extracellular matrix g 76.7 5 0.00011 41.7 5.5 37 97-133 1450-1486(1758)
22 PF08317 Spc7: Spc7 kinetochor 76.3 29 0.00063 29.1 9.1 38 93-130 205-242 (325)
23 cd02987 Phd_like_Phd Phosducin 75.2 4.6 0.0001 31.1 3.8 53 43-119 4-61 (175)
24 PF11544 Spc42p: Spindle pole 75.0 12 0.00027 27.1 5.7 35 96-130 18-52 (76)
25 cd00890 Prefoldin Prefoldin is 74.2 12 0.00027 26.1 5.5 35 99-133 89-123 (129)
26 PRK04325 hypothetical protein; 73.5 14 0.00029 25.7 5.5 33 99-131 25-57 (74)
27 PF10458 Val_tRNA-synt_C: Valy 73.1 7.7 0.00017 25.7 4.0 23 96-118 3-25 (66)
28 PRK02793 phi X174 lysis protei 73.1 14 0.00031 25.5 5.5 35 98-132 23-57 (72)
29 TIGR02338 gimC_beta prefoldin, 72.7 6.7 0.00014 28.1 3.9 46 87-132 64-109 (110)
30 PF13801 Metal_resist: Heavy-m 72.3 19 0.00042 23.6 5.8 56 52-116 51-106 (125)
31 COG1561 Uncharacterized stress 72.0 7.1 0.00015 34.1 4.6 39 96-134 218-289 (290)
32 TIGR02338 gimC_beta prefoldin, 71.8 15 0.00033 26.3 5.6 28 97-124 81-108 (110)
33 PRK01203 prefoldin subunit alp 71.7 10 0.00022 29.4 5.0 77 50-131 25-121 (130)
34 cd07655 F-BAR_PACSIN The F-BAR 71.4 47 0.001 27.0 8.9 60 49-121 133-193 (258)
35 PRK00295 hypothetical protein; 71.2 17 0.00037 24.8 5.5 35 97-131 19-53 (68)
36 PRK09343 prefoldin subunit bet 70.8 11 0.00023 27.9 4.7 34 99-132 80-113 (121)
37 PRK10803 tol-pal system protei 70.1 14 0.0003 30.4 5.7 39 96-134 60-98 (263)
38 PF11594 Med28: Mediator compl 69.9 13 0.00028 28.4 5.1 40 101-140 39-81 (106)
39 PRK11637 AmiB activator; Provi 69.9 14 0.00031 31.7 5.9 39 96-134 95-133 (428)
40 TIGR01242 26Sp45 26S proteasom 69.6 13 0.00029 30.8 5.5 34 96-129 5-38 (364)
41 PF00435 Spectrin: Spectrin re 69.2 25 0.00055 22.0 7.4 66 56-132 4-69 (105)
42 cd00584 Prefoldin_alpha Prefol 68.1 20 0.00042 25.7 5.5 32 98-129 95-126 (129)
43 PRK13922 rod shape-determining 67.6 16 0.00035 29.3 5.5 36 95-131 74-109 (276)
44 PF08580 KAR9: Yeast cortical 67.4 13 0.00029 35.2 5.7 81 49-134 191-288 (683)
45 PF10186 Atg14: UV radiation r 67.3 20 0.00044 27.8 5.8 34 97-130 70-103 (302)
46 TIGR00461 gcvP glycine dehydro 66.6 5.9 0.00013 39.0 3.3 49 92-142 847-903 (939)
47 PF04977 DivIC: Septum formati 66.4 32 0.00069 22.1 5.8 27 97-123 24-50 (80)
48 PRK02119 hypothetical protein; 66.3 24 0.00051 24.5 5.4 34 98-131 24-57 (73)
49 cd00632 Prefoldin_beta Prefold 66.1 24 0.00053 24.9 5.6 38 93-130 66-103 (105)
50 PF08376 NIT: Nitrate and nitr 66.1 42 0.0009 25.0 7.1 73 47-133 26-108 (247)
51 PF15188 CCDC-167: Coiled-coil 65.8 8.3 0.00018 28.2 3.2 24 97-120 5-28 (85)
52 PRK04406 hypothetical protein; 65.7 24 0.00053 24.7 5.4 34 98-131 26-59 (75)
53 PF04201 TPD52: Tumour protein 65.4 21 0.00045 29.0 5.7 30 97-126 36-65 (162)
54 PRK03947 prefoldin subunit alp 65.4 24 0.00051 25.8 5.6 33 98-130 102-134 (140)
55 TIGR02302 aProt_lowcomp conser 65.4 33 0.0007 33.8 7.9 35 49-104 496-530 (851)
56 PF14357 DUF4404: Domain of un 64.9 6.2 0.00014 28.0 2.4 43 92-134 17-62 (85)
57 PF08549 SWI-SNF_Ssr4: Fungal 64.6 11 0.00023 36.4 4.5 39 96-135 377-415 (669)
58 cd07638 BAR_ACAP2 The Bin/Amph 64.6 16 0.00035 29.7 5.0 36 97-132 2-37 (200)
59 PF11172 DUF2959: Protein of u 64.6 29 0.00062 29.1 6.5 73 48-132 34-106 (201)
60 PF11460 DUF3007: Protein of u 64.1 9 0.00019 29.2 3.2 39 51-106 64-102 (104)
61 PRK10884 SH3 domain-containing 63.6 13 0.00028 30.2 4.3 89 41-134 72-169 (206)
62 PF04546 Sigma70_ner: Sigma-70 63.2 2.9 6.3E-05 32.8 0.5 41 95-135 104-144 (211)
63 PF02996 Prefoldin: Prefoldin 63.0 18 0.0004 25.1 4.4 34 96-129 76-109 (120)
64 PF14645 Chibby: Chibby family 62.7 32 0.00069 25.8 5.9 38 93-130 67-104 (116)
65 PF04888 SseC: Secretion syste 62.7 27 0.00057 28.5 5.9 41 93-133 240-280 (306)
66 PRK05771 V-type ATP synthase s 62.7 21 0.00045 32.4 5.8 40 93-132 211-250 (646)
67 cd07429 Cby_like Chibby, a nuc 61.8 30 0.00066 26.3 5.7 37 93-133 68-104 (108)
68 PF11932 DUF3450: Protein of u 61.7 27 0.00058 28.0 5.7 6 50-55 22-27 (251)
69 PF13600 DUF4140: N-terminal d 61.5 32 0.00069 23.8 5.4 35 93-127 66-100 (104)
70 PRK00846 hypothetical protein; 61.2 33 0.00071 24.6 5.5 36 97-132 27-62 (77)
71 PF04521 Viral_P18: ssRNA posi 61.1 16 0.00035 28.5 4.2 32 93-124 75-106 (120)
72 TIGR00293 prefoldin, archaeal 60.9 28 0.00061 24.8 5.2 35 97-131 86-120 (126)
73 PF00631 G-gamma: GGL domain; 60.3 20 0.00044 23.8 4.1 23 96-118 1-23 (68)
74 PF10224 DUF2205: Predicted co 60.1 16 0.00035 26.3 3.8 35 93-127 12-63 (80)
75 cd07637 BAR_ACAP3 The Bin/Amph 59.9 22 0.00048 28.6 5.0 35 97-131 2-36 (200)
76 PF13600 DUF4140: N-terminal d 59.5 13 0.00028 25.8 3.2 40 99-138 65-104 (104)
77 PF04102 SlyX: SlyX; InterPro 59.3 26 0.00057 23.6 4.6 35 97-131 18-52 (69)
78 PF10186 Atg14: UV radiation r 58.5 38 0.00083 26.3 5.9 33 95-127 61-93 (302)
79 cd00176 SPEC Spectrin repeats, 58.3 42 0.00092 23.5 5.6 40 95-134 31-70 (213)
80 PRK09343 prefoldin subunit bet 58.3 41 0.00088 24.9 5.8 30 97-126 85-114 (121)
81 PRK11637 AmiB activator; Provi 58.1 32 0.0007 29.5 5.9 40 95-134 45-84 (428)
82 PF08340 DUF1732: Domain of un 57.9 33 0.00072 25.3 5.2 22 96-117 14-35 (87)
83 PF07195 FliD_C: Flagellar hoo 57.8 26 0.00057 27.8 5.0 38 95-132 198-235 (239)
84 PRK14148 heat shock protein Gr 57.7 15 0.00032 29.9 3.7 19 96-114 39-57 (195)
85 PF08614 ATG16: Autophagy prot 57.6 37 0.0008 26.4 5.7 29 99-127 125-153 (194)
86 TIGR00219 mreC rod shape-deter 57.4 32 0.00069 28.8 5.6 35 97-131 73-107 (283)
87 PF05377 FlaC_arch: Flagella a 57.1 34 0.00073 23.5 4.7 34 98-132 15-48 (55)
88 smart00338 BRLZ basic region l 56.9 39 0.00083 21.9 4.9 17 98-114 34-50 (65)
89 PF08700 Vps51: Vps51/Vps67; 56.9 25 0.00055 23.2 4.1 25 100-124 22-46 (87)
90 COG2900 SlyX Uncharacterized p 56.8 33 0.00072 24.7 4.9 35 97-131 22-56 (72)
91 PF09766 FimP: Fms-interacting 56.4 33 0.00072 29.6 5.7 35 98-132 109-143 (355)
92 PF01496 V_ATPase_I: V-type AT 56.3 33 0.00072 31.8 6.1 39 94-132 226-264 (759)
93 cd07679 F-BAR_PACSIN2 The F-BA 56.3 1.2E+02 0.0026 26.0 9.0 64 51-127 135-198 (258)
94 PF14276 DUF4363: Domain of un 56.1 33 0.00071 24.4 4.9 36 94-129 69-112 (121)
95 PLN02414 glycine dehydrogenase 55.9 10 0.00022 37.4 2.9 48 93-142 888-943 (993)
96 PF13779 DUF4175: Domain of un 55.8 61 0.0013 31.6 7.9 53 49-128 465-517 (820)
97 PF05791 Bacillus_HBL: Bacillu 55.7 31 0.00068 26.9 5.0 39 95-133 101-139 (184)
98 KOG4797 Transcriptional regula 55.5 30 0.00066 27.2 4.9 34 97-134 74-109 (123)
99 PF11867 DUF3387: Domain of un 55.5 42 0.00092 28.1 6.1 66 53-132 65-131 (335)
100 TIGR01063 gyrA DNA gyrase, A s 55.4 23 0.0005 33.8 5.0 39 93-131 423-468 (800)
101 PF00170 bZIP_1: bZIP transcri 55.4 55 0.0012 21.2 6.1 32 96-131 25-56 (64)
102 PRK05367 glycine dehydrogenase 55.4 12 0.00025 36.7 3.1 48 93-142 856-911 (954)
103 cd07599 BAR_Rvs167p The Bin/Am 55.1 99 0.0021 24.1 8.2 41 93-133 145-185 (216)
104 cd07604 BAR_ASAPs The Bin/Amph 55.0 34 0.00073 27.9 5.3 35 98-132 3-37 (215)
105 cd04259 AAK_AK-DapDC AAK_AK-Da 54.8 29 0.00064 29.1 5.1 42 96-137 61-103 (295)
106 PRK00736 hypothetical protein; 54.7 53 0.0011 22.4 5.5 33 99-131 21-53 (68)
107 KOG1962 B-cell receptor-associ 53.6 29 0.00062 29.2 4.8 34 96-129 157-190 (216)
108 KOG4010 Coiled-coil protein TP 53.4 30 0.00065 29.3 4.9 39 97-135 51-94 (208)
109 PRK09413 IS2 repressor TnpA; R 53.0 28 0.00061 25.1 4.1 71 50-125 31-102 (121)
110 PF05227 CHASE3: CHASE3 domain 52.9 50 0.0011 22.6 5.2 13 122-134 112-124 (138)
111 PF14335 DUF4391: Domain of un 52.4 24 0.00051 28.1 4.0 22 94-115 179-200 (221)
112 cd00677 S15_NS1_EPRS_RNA-bind 52.0 55 0.0012 20.2 5.3 36 97-132 2-43 (46)
113 PF06156 DUF972: Protein of un 51.8 60 0.0013 24.1 5.8 37 98-134 9-55 (107)
114 smart00787 Spc7 Spc7 kinetocho 51.7 1.5E+02 0.0032 25.5 8.9 41 93-133 200-240 (312)
115 PF06050 HGD-D: 2-hydroxygluta 51.5 56 0.0012 26.0 6.0 24 107-131 126-149 (349)
116 cd00890 Prefoldin Prefoldin is 51.4 54 0.0012 22.8 5.2 38 93-130 90-127 (129)
117 PF01920 Prefoldin_2: Prefoldi 51.2 69 0.0015 21.5 5.6 39 95-133 59-98 (106)
118 PRK13410 molecular chaperone D 51.0 46 0.00099 31.0 6.1 44 90-134 498-548 (668)
119 PRK05560 DNA gyrase subunit A; 50.8 29 0.00064 33.1 4.9 39 93-131 426-471 (805)
120 TIGR03545 conserved hypothetic 50.7 56 0.0012 30.3 6.6 63 51-116 166-231 (555)
121 PF14854 LURAP: Leucine rich a 50.7 39 0.00084 26.6 4.8 49 94-142 12-70 (121)
122 PF14389 Lzipper-MIP1: Leucine 50.2 22 0.00048 25.2 3.2 19 96-114 67-85 (88)
123 PRK09510 tolA cell envelope in 49.4 20 0.00043 32.2 3.4 32 93-124 76-107 (387)
124 cd07591 BAR_Rvs161p The Bin/Am 49.4 59 0.0013 26.3 5.8 40 93-132 7-46 (224)
125 PF06698 DUF1192: Protein of u 49.3 33 0.00072 23.6 3.8 22 99-120 23-44 (59)
126 PF04111 APG6: Autophagy prote 49.0 52 0.0011 28.0 5.7 36 95-130 48-83 (314)
127 PF02344 Myc-LZ: Myc leucine z 48.9 47 0.001 21.0 4.1 27 103-129 3-29 (32)
128 PF02996 Prefoldin: Prefoldin 48.4 59 0.0013 22.5 5.1 39 93-131 80-118 (120)
129 PRK09631 DNA topoisomerase IV 48.1 42 0.00091 31.9 5.5 34 95-128 402-435 (635)
130 PRK14160 heat shock protein Gr 48.1 49 0.0011 27.4 5.3 42 93-134 50-91 (211)
131 PF00956 NAP: Nucleosome assem 47.9 66 0.0014 25.8 5.9 38 96-133 11-49 (244)
132 cd07647 F-BAR_PSTPIP The F-BAR 47.9 1.4E+02 0.0031 23.8 8.9 36 94-129 150-185 (239)
133 PF06103 DUF948: Bacterial pro 47.8 72 0.0016 21.7 5.3 24 102-125 52-75 (90)
134 TIGR02209 ftsL_broad cell divi 47.4 47 0.001 22.0 4.2 19 97-115 38-56 (85)
135 PF14257 DUF4349: Domain of un 47.3 51 0.0011 26.4 5.1 26 98-123 163-188 (262)
136 PRK14140 heat shock protein Gr 47.3 44 0.00095 27.2 4.8 37 83-121 25-62 (191)
137 COG5250 RPB4 RNA polymerase II 47.3 50 0.0011 26.4 5.0 54 52-111 67-136 (138)
138 PF09738 DUF2051: Double stran 47.3 53 0.0012 28.4 5.6 63 48-123 83-145 (302)
139 PF01025 GrpE: GrpE; InterPro 47.2 36 0.00079 25.1 4.0 18 98-115 26-43 (165)
140 PF10779 XhlA: Haemolysin XhlA 46.9 87 0.0019 21.0 5.6 31 97-127 20-50 (71)
141 COG3678 CpxP P pilus assembly/ 46.7 1.5E+02 0.0031 23.5 8.5 23 93-115 96-118 (160)
142 PF01025 GrpE: GrpE; InterPro 46.6 74 0.0016 23.4 5.6 32 97-128 18-49 (165)
143 PF05377 FlaC_arch: Flagella a 46.4 94 0.002 21.3 5.7 35 96-134 6-40 (55)
144 PRK13922 rod shape-determining 46.2 36 0.00077 27.4 4.1 29 96-125 82-110 (276)
145 PF11285 DUF3086: Protein of u 46.1 22 0.00048 31.3 3.1 23 94-116 15-37 (283)
146 PF00816 Histone_HNS: H-NS his 45.8 53 0.0011 22.6 4.4 14 120-133 22-35 (93)
147 COG2096 cob(I)alamin adenosylt 45.8 19 0.00042 29.5 2.6 61 48-114 35-105 (184)
148 TIGR01061 parC_Gpos DNA topois 45.7 54 0.0012 31.3 5.8 38 93-130 423-467 (738)
149 PF07899 Frigida: Frigida-like 45.6 39 0.00084 28.7 4.4 24 49-75 234-257 (290)
150 PRK13411 molecular chaperone D 45.2 1.6E+02 0.0035 27.1 8.6 42 93-134 551-595 (653)
151 TIGR03185 DNA_S_dndD DNA sulfu 45.2 92 0.002 28.4 7.0 37 95-131 419-455 (650)
152 PHA03041 virion core protein; 45.2 33 0.00072 27.9 3.8 38 99-136 88-125 (153)
153 cd07651 F-BAR_PombeCdc15_like 44.7 1.6E+02 0.0034 23.3 7.9 62 50-130 122-183 (236)
154 PF11559 ADIP: Afadin- and alp 44.7 93 0.002 22.9 5.9 17 98-114 74-90 (151)
155 PF00244 14-3-3: 14-3-3 protei 44.5 64 0.0014 26.1 5.4 59 57-126 45-103 (236)
156 PF03961 DUF342: Protein of un 44.5 1.5E+02 0.0032 25.9 7.9 38 93-130 371-408 (451)
157 TIGR01061 parC_Gpos DNA topois 44.5 42 0.00091 32.0 4.9 12 120-131 439-450 (738)
158 COG1579 Zn-ribbon protein, pos 44.4 58 0.0013 27.5 5.3 31 99-129 105-135 (239)
159 KOG2351 RNA polymerase II, fou 44.4 60 0.0013 25.9 5.0 54 54-111 65-132 (134)
160 COG4026 Uncharacterized protei 44.3 45 0.00098 29.3 4.7 35 96-130 162-196 (290)
161 COG3883 Uncharacterized protei 44.2 52 0.0011 28.4 5.0 32 96-130 79-110 (265)
162 COG1938 Archaeal enzymes of AT 44.1 42 0.0009 28.6 4.4 18 99-116 206-223 (244)
163 PF09210 DUF1957: Domain of un 43.8 54 0.0012 24.1 4.5 42 47-105 49-90 (102)
164 TIGR00513 accA acetyl-CoA carb 43.8 44 0.00095 29.2 4.6 21 96-116 34-54 (316)
165 PTZ00117 malate dehydrogenase; 43.6 41 0.00089 28.0 4.2 23 93-115 291-313 (319)
166 PRK15422 septal ring assembly 43.3 50 0.0011 24.2 4.1 28 96-123 24-61 (79)
167 PLN02764 glycosyltransferase f 42.9 37 0.00081 30.3 4.1 40 97-136 410-452 (453)
168 PRK14549 50S ribosomal protein 42.7 59 0.0013 22.3 4.2 37 99-135 14-58 (69)
169 PF04645 DUF603: Protein of un 42.7 55 0.0012 27.3 4.8 23 96-118 111-133 (181)
170 PF03993 DUF349: Domain of Unk 42.6 83 0.0018 20.2 4.8 17 55-71 4-20 (77)
171 PF04420 CHD5: CHD5-like prote 42.4 66 0.0014 24.8 4.9 38 98-135 74-111 (161)
172 cd00632 Prefoldin_beta Prefold 42.4 96 0.0021 21.8 5.4 38 97-134 63-100 (105)
173 TIGR01062 parC_Gneg DNA topois 42.3 48 0.001 31.9 5.0 73 59-131 376-465 (735)
174 cd07639 BAR_ACAP1 The Bin/Amph 42.3 66 0.0014 26.3 5.2 36 97-132 2-37 (200)
175 PF03114 BAR: BAR domain; Int 41.9 1.2E+02 0.0026 21.9 6.0 38 96-133 25-62 (229)
176 PF12644 DUF3782: Protein of u 41.8 68 0.0015 20.5 4.2 31 97-127 8-39 (64)
177 PRK09039 hypothetical protein; 41.7 48 0.001 28.5 4.5 25 48-72 122-149 (343)
178 PF10267 Tmemb_cc2: Predicted 41.6 1.4E+02 0.0031 26.9 7.6 26 97-122 258-283 (395)
179 PF13935 Ead_Ea22: Ead/Ea22-li 41.4 68 0.0015 24.1 4.8 17 96-112 73-89 (139)
180 PRK14158 heat shock protein Gr 41.2 66 0.0014 26.2 5.0 22 93-114 36-57 (194)
181 PF02994 Transposase_22: L1 tr 41.1 79 0.0017 27.5 5.7 34 97-130 144-184 (370)
182 PF05010 TACC: Transforming ac 41.1 90 0.002 25.7 5.8 40 95-134 166-205 (207)
183 PF10372 YojJ: Bacterial membr 41.1 35 0.00076 24.2 3.0 39 96-134 16-54 (70)
184 COG4064 MtrG Tetrahydromethano 40.5 90 0.002 22.9 5.1 33 94-126 12-44 (75)
185 KOG4302 Microtubule-associated 40.4 2.1E+02 0.0045 27.8 8.7 78 52-136 60-142 (660)
186 PF02050 FliJ: Flagellar FliJ 40.0 85 0.0018 20.5 4.6 23 97-119 66-88 (123)
187 PF07798 DUF1640: Protein of u 39.9 83 0.0018 24.2 5.1 7 107-113 61-67 (177)
188 cd07680 F-BAR_PACSIN1 The F-BA 39.8 2.3E+02 0.005 23.9 8.7 64 50-126 134-197 (258)
189 PF12777 MT: Microtubule-bindi 39.8 75 0.0016 26.9 5.3 32 96-127 14-45 (344)
190 cd02682 MIT_AAA_Arch MIT: doma 39.7 1E+02 0.0022 21.8 5.2 52 48-113 19-70 (75)
191 PRK00295 hypothetical protein; 39.6 1.2E+02 0.0026 20.6 5.6 25 96-120 4-28 (68)
192 PF04508 Pox_A_type_inc: Viral 39.5 42 0.00092 19.6 2.7 17 98-114 2-18 (23)
193 PRK13979 DNA topoisomerase IV 39.5 54 0.0012 32.5 4.9 81 51-131 381-487 (957)
194 PRK11239 hypothetical protein; 39.2 55 0.0012 27.7 4.3 30 96-125 182-211 (215)
195 COG0099 RpsM Ribosomal protein 39.2 69 0.0015 25.0 4.6 24 91-114 45-75 (121)
196 PF07061 Swi5: Swi5; InterPro 39.0 76 0.0016 22.6 4.5 32 98-129 15-47 (83)
197 PRK01433 hscA chaperone protei 39.0 1E+02 0.0022 28.3 6.4 40 93-133 481-527 (595)
198 PF04568 IATP: Mitochondrial A 38.9 1.1E+02 0.0023 22.9 5.4 28 104-131 72-99 (100)
199 COG1392 Phosphate transport re 38.9 79 0.0017 25.8 5.1 44 94-137 46-102 (217)
200 PF10392 COG5: Golgi transport 38.8 1.1E+02 0.0024 22.5 5.5 34 97-130 79-112 (132)
201 PRK08032 fliD flagellar cappin 38.8 69 0.0015 28.4 5.1 11 47-57 353-363 (462)
202 TIGR00219 mreC rod shape-deter 38.8 55 0.0012 27.4 4.3 24 101-124 84-107 (283)
203 PF02866 Ldh_1_C: lactate/mala 38.8 68 0.0015 24.0 4.4 25 93-117 147-171 (174)
204 PHA02675 ORF104 fusion protein 38.8 39 0.00084 25.5 3.0 23 96-118 57-79 (90)
205 CHL00198 accA acetyl-CoA carbo 38.6 57 0.0012 28.6 4.5 22 96-117 37-58 (322)
206 PRK11546 zraP zinc resistance 38.5 89 0.0019 24.7 5.2 33 92-124 45-81 (143)
207 PF03112 DUF244: Uncharacteriz 38.3 76 0.0016 26.0 4.9 39 95-133 75-113 (158)
208 PF00521 DNA_topoisoIV: DNA gy 38.2 55 0.0012 28.6 4.3 30 93-122 387-416 (426)
209 PF07195 FliD_C: Flagellar hoo 38.2 1.2E+02 0.0026 24.2 5.9 35 96-130 192-226 (239)
210 PF09969 DUF2203: Uncharacteri 38.1 89 0.0019 23.5 4.9 28 94-121 47-74 (120)
211 KOG4571 Activating transcripti 38.0 65 0.0014 28.5 4.7 29 95-127 260-288 (294)
212 PRK13979 DNA topoisomerase IV 37.9 1.3E+02 0.0028 30.0 7.2 23 111-133 449-471 (957)
213 PF13942 Lipoprotein_20: YfhG 37.6 1.6E+02 0.0036 24.4 6.8 36 95-130 128-163 (179)
214 PF01616 Orbi_NS3: Orbivirus N 37.5 50 0.0011 27.4 3.8 24 98-121 151-174 (195)
215 PF03556 Cullin_binding: Culli 37.5 40 0.00086 25.0 2.9 34 99-132 1-34 (117)
216 KOG0288 WD40 repeat protein Ti 37.3 89 0.0019 29.3 5.7 34 95-128 53-86 (459)
217 PRK05561 DNA topoisomerase IV 37.2 64 0.0014 30.8 4.9 72 59-130 389-477 (742)
218 TIGR03007 pepcterm_ChnLen poly 37.1 2.7E+02 0.0059 23.9 9.2 39 95-133 252-290 (498)
219 COG1538 TolC Outer membrane pr 37.1 1E+02 0.0022 26.2 5.7 62 45-122 334-395 (457)
220 PF15146 FANCAA: Fanconi anemi 37.0 39 0.00086 31.3 3.4 27 99-125 15-41 (435)
221 PF06305 DUF1049: Protein of u 36.9 53 0.0011 20.9 3.1 16 98-113 49-64 (68)
222 PF10925 DUF2680: Protein of u 36.6 57 0.0012 22.0 3.4 22 96-117 6-27 (59)
223 TIGR00636 PduO_Nterm ATP:cob(I 36.5 65 0.0014 25.6 4.2 62 48-114 28-97 (171)
224 PF09325 Vps5: Vps5 C terminal 36.3 1.3E+02 0.0028 22.9 5.6 42 97-138 31-72 (236)
225 cd00187 TOP4c DNA Topoisomeras 36.2 63 0.0014 29.2 4.5 28 93-120 401-428 (445)
226 KOG1962 B-cell receptor-associ 36.1 94 0.002 26.1 5.2 39 95-133 149-187 (216)
227 PF05667 DUF812: Protein of un 36.1 93 0.002 29.2 5.7 41 94-134 325-365 (594)
228 PF12097 DUF3573: Protein of u 36.0 45 0.00098 30.5 3.6 28 92-119 37-64 (383)
229 PF09769 ApoO: Apolipoprotein 36.0 1.1E+02 0.0024 23.0 5.2 34 99-132 40-73 (158)
230 COG2433 Uncharacterized conser 35.9 83 0.0018 30.6 5.4 34 99-132 431-464 (652)
231 PRK12566 glycine dehydrogenase 35.9 23 0.00049 35.3 1.8 47 93-142 857-911 (954)
232 PF01627 Hpt: Hpt domain; Int 35.7 1.1E+02 0.0024 19.0 4.7 35 100-137 56-90 (90)
233 cd00176 SPEC Spectrin repeats, 35.6 1.5E+02 0.0033 20.6 5.6 39 95-133 137-175 (213)
234 TIGR02690 resist_ArsH arsenica 35.6 1.8E+02 0.0039 23.8 6.7 62 59-126 143-213 (219)
235 PF12252 SidE: Dot/Icm substra 35.5 54 0.0012 34.2 4.3 43 92-134 1155-1216(1439)
236 PRK03830 small acid-soluble sp 35.5 76 0.0017 23.0 4.0 26 109-134 40-65 (73)
237 PF04678 DUF607: Protein of un 35.5 1.1E+02 0.0024 23.8 5.3 44 93-137 53-96 (180)
238 PF07586 HXXSHH: Protein of un 35.5 1E+02 0.0022 25.3 5.3 51 43-111 144-195 (302)
239 PF10234 Cluap1: Clusterin-ass 35.5 70 0.0015 27.5 4.5 42 88-129 216-257 (267)
240 PF09712 PHA_synth_III_E: Poly 35.2 1.1E+02 0.0025 25.8 5.7 24 92-115 267-290 (293)
241 PHA02754 hypothetical protein; 35.2 66 0.0014 23.1 3.6 28 105-134 3-30 (67)
242 TIGR03545 conserved hypothetic 35.1 1.1E+02 0.0024 28.4 6.0 75 48-133 170-255 (555)
243 cd07671 F-BAR_PSTPIP1 The F-BA 35.0 2.5E+02 0.0055 23.0 8.3 66 50-130 121-186 (242)
244 PF14357 DUF4404: Domain of un 35.0 95 0.0021 22.0 4.4 35 100-134 49-83 (85)
245 cd08794 Death_IRAK1 Death doma 35.0 53 0.0012 24.4 3.2 37 94-130 35-74 (84)
246 COG1745 Predicted metal-bindin 35.0 95 0.002 23.5 4.6 43 58-115 51-93 (94)
247 PRK13729 conjugal transfer pil 34.5 97 0.0021 28.9 5.5 19 96-114 75-93 (475)
248 TIGR02350 prok_dnaK chaperone 34.3 3.4E+02 0.0074 24.3 8.8 42 93-134 547-589 (595)
249 PF11262 Tho2: Transcription f 34.2 69 0.0015 26.9 4.2 14 95-108 29-42 (298)
250 PRK00106 hypothetical protein; 34.0 1.1E+02 0.0025 28.4 5.9 24 107-130 135-158 (535)
251 PF05565 Sipho_Gp157: Siphovir 33.9 1E+02 0.0022 23.7 4.8 20 107-126 67-86 (162)
252 PF07106 TBPIP: Tat binding pr 33.9 88 0.0019 23.6 4.4 28 96-123 78-105 (169)
253 COG1340 Uncharacterized archae 33.8 97 0.0021 27.2 5.1 33 100-132 30-62 (294)
254 PF03148 Tektin: Tektin family 33.7 1.1E+02 0.0024 26.5 5.5 41 96-136 323-363 (384)
255 PRK00290 dnaK molecular chaper 33.5 1.2E+02 0.0026 27.5 5.8 41 92-133 498-545 (627)
256 PRK00290 dnaK molecular chaper 33.5 3.6E+02 0.0077 24.5 8.8 41 93-133 549-590 (627)
257 PF08317 Spc7: Spc7 kinetochor 33.0 1.5E+02 0.0032 25.0 5.9 27 51-77 179-208 (325)
258 PRK12758 DNA topoisomerase IV 33.0 96 0.0021 30.9 5.5 30 97-126 425-454 (869)
259 PRK05724 acetyl-CoA carboxylas 32.9 45 0.00097 29.2 3.0 21 96-116 34-54 (319)
260 COG1422 Predicted membrane pro 32.9 1.5E+02 0.0033 24.8 6.0 24 93-116 68-91 (201)
261 PF07412 Geminin: Geminin; In 32.8 83 0.0018 26.3 4.4 31 98-128 126-159 (200)
262 PF12325 TMF_TATA_bd: TATA ele 32.7 1.8E+02 0.0039 22.1 5.8 61 55-121 25-85 (120)
263 smart00721 BAR BAR domain. 32.6 1.6E+02 0.0035 22.1 5.6 36 96-131 26-64 (239)
264 TIGR01730 RND_mfp RND family e 32.5 2.2E+02 0.0047 22.1 6.4 35 93-127 98-132 (322)
265 PF00804 Syntaxin: Syntaxin; 32.5 1E+02 0.0023 20.0 4.1 32 100-131 41-72 (103)
266 PF05082 Rop-like: Rop-like; 32.5 1.2E+02 0.0027 21.4 4.6 29 106-134 4-32 (66)
267 PF05600 DUF773: Protein of un 32.5 1.3E+02 0.0028 27.6 5.9 35 98-132 454-488 (507)
268 TIGR00634 recN DNA repair prot 32.4 2E+02 0.0044 25.8 7.0 40 93-132 297-336 (563)
269 PF14193 DUF4315: Domain of un 32.4 1.4E+02 0.0031 21.5 5.0 26 97-129 8-33 (83)
270 PF07030 DUF1320: Protein of u 32.3 49 0.0011 24.3 2.7 23 51-73 84-106 (130)
271 PRK05771 V-type ATP synthase s 32.2 1.3E+02 0.0028 27.4 5.9 28 103-130 214-241 (646)
272 PTZ00400 DnaK-type molecular c 32.2 3.3E+02 0.007 25.3 8.5 41 93-133 590-631 (663)
273 COG1842 PspA Phage shock prote 32.1 1.4E+02 0.0031 24.6 5.6 37 98-134 93-129 (225)
274 PF02388 FemAB: FemAB family; 32.0 1.6E+02 0.0034 25.6 6.1 35 96-130 248-285 (406)
275 TIGR01834 PHA_synth_III_E poly 32.0 2.1E+02 0.0046 25.3 6.9 29 93-121 285-313 (320)
276 PF11932 DUF3450: Protein of u 31.9 1.7E+02 0.0037 23.4 5.9 9 120-128 75-83 (251)
277 PRK13907 rnhA ribonuclease H; 31.9 1.8E+02 0.0039 20.3 5.7 23 116-138 83-105 (128)
278 PF05852 DUF848: Gammaherpesvi 31.9 53 0.0011 26.1 3.0 29 93-121 85-113 (146)
279 PLN03230 acetyl-coenzyme A car 31.8 82 0.0018 29.1 4.5 14 98-111 81-94 (431)
280 PF06005 DUF904: Protein of un 31.8 1.8E+02 0.0039 20.3 5.4 23 105-127 47-69 (72)
281 PF06193 Orthopox_A5L: Orthopo 31.7 73 0.0016 26.1 3.8 30 107-136 110-139 (166)
282 PF07730 HisKA_3: Histidine ki 31.7 1.1E+02 0.0024 18.9 4.0 27 108-134 37-63 (68)
283 PF04156 IncA: IncA protein; 31.7 2.2E+02 0.0049 21.3 8.6 19 98-116 152-170 (191)
284 TIGR02054 MerD mercuric resist 31.6 1.1E+02 0.0023 22.9 4.4 31 102-132 81-111 (120)
285 PRK00888 ftsB cell division pr 31.5 1.2E+02 0.0027 22.0 4.7 14 115-128 48-61 (105)
286 TIGR03319 YmdA_YtgF conserved 31.4 1.4E+02 0.003 27.3 5.9 26 106-131 106-131 (514)
287 PF00206 Lyase_1: Lyase; Inte 31.1 98 0.0021 25.5 4.6 28 113-140 245-272 (312)
288 KOG3633 BAG family molecular c 31.0 3.4E+02 0.0074 23.2 7.9 14 99-112 51-64 (219)
289 PF05524 PEP-utilisers_N: PEP- 31.0 1.6E+02 0.0035 20.7 5.1 25 95-119 33-57 (123)
290 CHL00094 dnaK heat shock prote 30.9 3.8E+02 0.0083 24.4 8.6 41 93-133 551-592 (621)
291 PF15290 Syntaphilin: Golgi-lo 30.7 1.3E+02 0.0027 27.0 5.4 38 96-133 88-142 (305)
292 TIGR03090 SASP_tlp small, acid 30.6 1.1E+02 0.0024 22.1 4.1 27 108-134 40-66 (70)
293 PF06295 DUF1043: Protein of u 30.5 2.2E+02 0.0047 21.2 5.9 22 99-120 27-48 (128)
294 PF08910 Aida_N: Aida N-termin 30.4 1.1E+02 0.0025 23.3 4.4 72 47-132 17-96 (106)
295 KOG3759 Uncharacterized RUN do 30.3 80 0.0017 30.4 4.3 35 103-137 208-242 (621)
296 PF11336 DUF3138: Protein of u 30.2 49 0.0011 31.2 2.9 21 96-116 31-51 (514)
297 cd01878 HflX HflX subfamily. 30.2 1.1E+02 0.0024 22.3 4.3 25 97-121 6-30 (204)
298 COG1843 FlgD Flagellar hook ca 30.1 35 0.00077 28.3 1.8 14 115-128 30-43 (222)
299 PF00038 Filament: Intermediat 30.0 1.3E+02 0.0027 24.2 4.9 19 48-66 168-186 (312)
300 PRK14139 heat shock protein Gr 30.0 1.6E+02 0.0034 23.9 5.5 53 73-125 8-61 (185)
301 PF14744 WASH-7_mid: WASH comp 29.9 46 0.001 29.9 2.6 32 104-135 283-316 (350)
302 CHL00198 accA acetyl-CoA carbo 29.9 58 0.0012 28.6 3.2 44 96-139 12-63 (322)
303 PF08900 DUF1845: Domain of un 29.8 57 0.0012 26.5 2.9 35 93-127 58-92 (217)
304 PF04977 DivIC: Septum formati 29.8 1.5E+02 0.0033 18.8 5.2 18 98-115 18-35 (80)
305 KOG0250 DNA repair protein RAD 29.8 1.2E+02 0.0026 31.1 5.6 39 97-135 408-456 (1074)
306 cd02678 MIT_VPS4 MIT: domain c 29.7 1.7E+02 0.0038 19.5 4.9 24 48-71 19-42 (75)
307 PF08700 Vps51: Vps51/Vps67; 29.7 1.3E+02 0.0028 19.8 4.2 14 98-111 59-72 (87)
308 PRK11677 hypothetical protein; 29.7 2.1E+02 0.0046 22.2 5.9 33 97-129 36-68 (134)
309 PF15619 Lebercilin: Ciliary p 29.6 1.3E+02 0.0028 24.3 4.9 35 94-128 115-149 (194)
310 PF09346 SMI1_KNR4: SMI1 / KNR 29.6 40 0.00088 22.0 1.7 15 93-107 1-15 (130)
311 PF14381 EDR1: Ethylene-respon 29.5 78 0.0017 25.9 3.7 38 93-133 68-105 (204)
312 PF12072 DUF3552: Domain of un 29.4 2E+02 0.0044 22.6 5.9 10 116-125 125-134 (201)
313 TIGR02894 DNA_bind_RsfA transc 29.2 1.4E+02 0.0031 24.2 5.1 20 97-116 111-130 (161)
314 PF09457 RBD-FIP: FIP domain ; 29.2 1.7E+02 0.0037 19.3 5.4 32 101-132 4-35 (48)
315 PRK04654 sec-independent trans 29.0 1.3E+02 0.0029 25.5 5.0 33 97-129 54-86 (214)
316 PF01402 RHH_1: Ribbon-helix-h 28.9 1.2E+02 0.0026 17.4 3.7 31 94-127 6-36 (39)
317 PRK07737 fliD flagellar cappin 28.9 1.2E+02 0.0027 27.3 5.1 8 49-56 379-386 (501)
318 PF05130 FlgN: FlgN protein; 28.8 1.3E+02 0.0028 20.4 4.1 38 95-132 82-119 (143)
319 TIGR00513 accA acetyl-CoA carb 28.7 60 0.0013 28.4 3.1 44 96-139 9-60 (316)
320 cd00427 Ribosomal_L29_HIP Ribo 28.7 1.1E+02 0.0024 19.9 3.6 18 100-117 9-26 (57)
321 cd07589 BAR_DNMBP The Bin/Amph 28.6 2.1E+02 0.0046 22.4 5.8 35 97-131 5-39 (195)
322 PF11382 DUF3186: Protein of u 28.6 1.4E+02 0.0029 25.3 5.0 27 97-123 46-72 (308)
323 KOG1510 RNA polymerase II holo 28.5 1.9E+02 0.0041 23.2 5.6 38 96-133 90-130 (139)
324 cd00187 TOP4c DNA Topoisomeras 28.5 1.5E+02 0.0032 26.8 5.6 16 108-123 409-424 (445)
325 PF10883 DUF2681: Protein of u 28.5 1.2E+02 0.0026 22.3 4.1 26 97-122 30-55 (87)
326 PRK06991 ferredoxin; Provision 28.5 1E+02 0.0022 26.1 4.2 26 86-111 233-258 (270)
327 KOG3119 Basic region leucine z 28.5 1.7E+02 0.0037 24.4 5.6 40 93-132 190-246 (269)
328 PF12737 Mating_C: C-terminal 28.4 47 0.001 30.0 2.4 22 93-114 398-419 (419)
329 PLN02943 aminoacyl-tRNA ligase 28.3 73 0.0016 31.0 3.8 23 96-118 888-910 (958)
330 KOG4302 Microtubule-associated 28.1 5.7E+02 0.012 24.9 10.3 79 50-132 111-195 (660)
331 COG2916 Hns DNA-binding protei 28.1 1.4E+02 0.003 23.4 4.7 33 98-136 22-54 (128)
332 PF01865 PhoU_div: Protein of 28.0 2E+02 0.0042 21.9 5.4 22 95-116 45-66 (214)
333 cd07307 BAR The Bin/Amphiphysi 28.0 2.1E+02 0.0045 19.8 7.5 33 95-127 126-158 (194)
334 PRK14161 heat shock protein Gr 27.9 2.2E+02 0.0048 22.8 5.9 20 94-113 23-42 (178)
335 cd07601 BAR_APPL The Bin/Amphi 27.8 1.6E+02 0.0034 24.3 5.2 33 99-131 4-36 (215)
336 TIGR02894 DNA_bind_RsfA transc 27.8 2.1E+02 0.0045 23.3 5.8 10 54-63 55-64 (161)
337 PF12709 Kinetocho_Slk19: Cent 27.8 1.7E+02 0.0036 21.7 4.8 28 97-124 56-83 (87)
338 KOG0977 Nuclear envelope prote 27.7 1.3E+02 0.0028 28.5 5.2 32 96-127 161-192 (546)
339 TIGR00162 conserved hypothetic 27.7 2.8E+02 0.0061 21.9 6.4 22 99-120 147-168 (188)
340 COG4663 FcbT1 TRAP-type mannit 27.7 1.4E+02 0.0031 27.2 5.2 48 90-137 302-349 (363)
341 COG0184 RpsO Ribosomal protein 27.7 2.5E+02 0.0054 20.6 5.7 44 87-132 19-68 (89)
342 PF08537 NBP1: Fungal Nap bind 27.6 94 0.002 27.8 4.1 39 96-134 181-222 (323)
343 PF08776 VASP_tetra: VASP tetr 27.5 1.8E+02 0.004 19.0 5.7 37 95-134 1-38 (40)
344 PF10423 AMNp_N: Bacterial AMP 27.5 81 0.0017 25.2 3.4 24 50-73 3-26 (160)
345 PF04888 SseC: Secretion syste 27.5 1.9E+02 0.0041 23.6 5.6 39 95-133 256-294 (306)
346 TIGR01837 PHA_granule_1 poly(h 27.5 93 0.002 23.0 3.5 22 93-114 92-113 (118)
347 PRK06030 hypothetical protein; 27.4 1E+02 0.0022 23.5 3.8 21 116-136 98-118 (124)
348 PF07536 HWE_HK: HWE histidine 27.3 1.6E+02 0.0034 20.4 4.4 19 53-71 1-19 (83)
349 PRK03598 putative efflux pump 27.2 2.3E+02 0.0049 23.1 5.9 53 48-115 144-196 (331)
350 TIGR02350 prok_dnaK chaperone 27.2 1.9E+02 0.004 25.9 5.9 42 92-133 496-543 (595)
351 PF08663 HalX: HalX domain; I 27.2 1.2E+02 0.0025 21.2 3.7 26 95-120 34-59 (71)
352 PF11559 ADIP: Afadin- and alp 27.1 2.6E+02 0.0056 20.6 5.8 36 97-132 87-122 (151)
353 PF10187 Nefa_Nip30_N: N-termi 27.0 1.8E+02 0.0039 21.4 4.9 31 91-121 65-95 (102)
354 PF11382 DUF3186: Protein of u 27.0 1.5E+02 0.0032 25.1 5.0 31 98-128 40-73 (308)
355 PRK09631 DNA topoisomerase IV 26.9 1.5E+02 0.0032 28.4 5.4 35 95-129 409-443 (635)
356 PF13643 DUF4145: Domain of un 26.9 1.2E+02 0.0025 19.8 3.6 54 57-130 10-63 (87)
357 PLN03230 acetyl-coenzyme A car 26.9 66 0.0014 29.7 3.1 22 96-117 104-125 (431)
358 TIGR01554 major_cap_HK97 phage 26.8 3.8E+02 0.0083 22.5 7.7 19 52-70 2-20 (378)
359 PF02388 FemAB: FemAB family; 26.8 2.1E+02 0.0045 24.8 6.0 9 96-104 255-263 (406)
360 PF08172 CASP_C: CASP C termin 26.7 1.6E+02 0.0036 24.6 5.2 34 96-129 99-132 (248)
361 PF11853 DUF3373: Protein of u 26.7 1E+02 0.0022 28.8 4.2 19 98-116 32-50 (489)
362 KOG2856 Adaptor protein PACSIN 26.6 5.1E+02 0.011 24.4 8.7 52 51-115 144-195 (472)
363 KOG4370 Ral-GTPase effector RL 26.6 3.2E+02 0.0069 26.1 7.4 69 59-131 371-443 (514)
364 PRK03947 prefoldin subunit alp 26.5 2E+02 0.0044 20.9 5.1 37 96-132 93-129 (140)
365 PF06103 DUF948: Bacterial pro 26.5 2.1E+02 0.0046 19.4 5.6 30 98-127 34-63 (90)
366 PRK01203 prefoldin subunit alp 26.5 2.3E+02 0.0049 22.1 5.6 28 96-123 6-33 (130)
367 PF10146 zf-C4H2: Zinc finger- 26.4 2.1E+02 0.0045 23.8 5.7 38 98-135 26-63 (230)
368 TIGR00293 prefoldin, archaeal 26.4 2.4E+02 0.0052 20.0 8.5 41 88-128 84-124 (126)
369 KOG1463 26S proteasome regulat 26.4 1.6E+02 0.0036 27.2 5.5 43 93-135 38-82 (411)
370 PRK07417 arogenate dehydrogena 26.3 1.6E+02 0.0034 23.6 4.8 33 98-130 240-273 (279)
371 cd07588 BAR_Amphiphysin The Bi 26.3 2.4E+02 0.0051 23.0 5.9 35 97-131 12-46 (211)
372 TIGR02209 ftsL_broad cell divi 26.3 1.5E+02 0.0033 19.5 4.1 29 95-127 29-57 (85)
373 PF05308 Mito_fiss_reg: Mitoch 26.3 93 0.002 26.3 3.7 24 92-115 114-140 (253)
374 KOG3650 Predicted coiled-coil 26.2 1.6E+02 0.0034 23.1 4.7 25 113-140 89-113 (120)
375 PRK00888 ftsB cell division pr 26.2 2.2E+02 0.0048 20.7 5.2 22 96-117 40-61 (105)
376 KOG0979 Structural maintenance 26.2 1.1E+02 0.0024 31.4 4.6 44 95-138 648-691 (1072)
377 PTZ00419 valyl-tRNA synthetase 26.2 85 0.0018 30.4 3.8 22 96-117 928-949 (995)
378 PF14735 HAUS4: HAUS augmin-li 26.0 2.3E+02 0.005 23.7 5.9 26 98-123 210-235 (238)
379 PF14182 YgaB: YgaB-like prote 26.0 1.6E+02 0.0034 21.7 4.3 19 106-124 42-60 (79)
380 PRK14161 heat shock protein Gr 26.0 2.2E+02 0.0047 22.8 5.6 38 96-133 11-48 (178)
381 COG1382 GimC Prefoldin, chaper 25.9 2.5E+02 0.0054 21.7 5.6 35 99-133 79-113 (119)
382 PF04111 APG6: Autophagy prote 25.9 1.8E+02 0.0039 24.8 5.3 17 99-115 66-82 (314)
383 PRK03992 proteasome-activating 25.9 1.9E+02 0.0041 24.8 5.5 26 97-122 15-40 (389)
384 PF13815 Dzip-like_N: Iguana/D 25.8 2.6E+02 0.0057 20.3 5.6 26 50-75 17-42 (118)
385 PLN00135 malate dehydrogenase 25.8 37 0.0008 28.8 1.2 16 46-61 131-146 (309)
386 COG3402 Uncharacterized conser 25.8 79 0.0017 25.8 3.1 33 84-116 128-160 (161)
387 COG2433 Uncharacterized conser 25.7 1.4E+02 0.0031 29.0 5.2 30 98-127 475-504 (652)
388 PF13166 AAA_13: AAA domain 25.7 4.9E+02 0.011 23.4 8.2 29 106-134 324-352 (712)
389 PRK05729 valS valyl-tRNA synth 25.7 90 0.0019 29.8 3.8 22 96-117 810-831 (874)
390 PRK14163 heat shock protein Gr 25.7 3.4E+02 0.0074 22.6 6.8 26 93-118 36-61 (214)
391 PF00170 bZIP_1: bZIP transcri 25.6 1.9E+02 0.0042 18.6 5.3 20 96-115 32-51 (64)
392 PF06295 DUF1043: Protein of u 25.6 2.5E+02 0.0054 20.9 5.5 34 96-129 31-64 (128)
393 PRK05759 F0F1 ATP synthase sub 25.5 2.3E+02 0.0051 20.6 5.3 32 96-127 44-75 (156)
394 cd01111 HTH_MerD Helix-Turn-He 25.5 1.2E+02 0.0025 21.8 3.6 29 102-130 78-106 (107)
395 COG5509 Uncharacterized small 25.5 1.3E+02 0.0027 21.6 3.7 22 99-120 27-48 (65)
396 PF14048 MBD_C: C-terminal dom 25.4 98 0.0021 22.7 3.2 22 94-115 73-94 (96)
397 PF08826 DMPK_coil: DMPK coile 25.3 79 0.0017 21.7 2.6 13 101-113 43-55 (61)
398 PRK04325 hypothetical protein; 25.3 2.4E+02 0.0051 19.5 5.6 25 96-120 8-32 (74)
399 PF12017 Tnp_P_element: Transp 25.3 2E+02 0.0043 24.0 5.4 18 98-115 19-36 (236)
400 PF14643 DUF4455: Domain of un 25.2 1.2E+02 0.0026 26.9 4.4 32 99-130 372-403 (473)
401 PF10779 XhlA: Haemolysin XhlA 25.0 2.2E+02 0.0047 19.1 5.8 38 99-137 15-52 (71)
402 PRK10636 putative ABC transpor 25.0 1.4E+02 0.0031 27.2 4.8 8 48-55 509-516 (638)
403 PRK02224 chromosome segregatio 24.9 2.1E+02 0.0045 26.5 5.9 13 49-61 162-174 (880)
404 TIGR03824 FlgM_jcvi flagellar 24.9 84 0.0018 22.0 2.7 41 93-133 37-77 (95)
405 PLN03184 chloroplast Hsp70; Pr 24.8 5E+02 0.011 24.2 8.4 40 93-132 588-628 (673)
406 smart00502 BBC B-Box C-termina 24.8 2.2E+02 0.0047 18.9 5.8 35 99-133 52-90 (127)
407 PF04859 DUF641: Plant protein 24.8 2.7E+02 0.0059 21.6 5.7 39 94-132 84-122 (131)
408 PF09307 MHC2-interact: CLIP, 24.8 24 0.00053 27.0 0.0 24 96-119 59-82 (114)
409 PF09325 Vps5: Vps5 C terminal 24.7 1.4E+02 0.0031 22.6 4.2 27 96-122 169-195 (236)
410 PRK06664 fliD flagellar hook-a 24.7 1.5E+02 0.0033 28.1 5.1 9 49-57 544-552 (661)
411 CHL00094 dnaK heat shock prote 24.7 2E+02 0.0044 26.1 5.7 42 91-133 499-547 (621)
412 PF13863 DUF4200: Domain of un 24.6 2.5E+02 0.0054 19.7 5.1 40 96-135 59-98 (126)
413 PRK05561 DNA topoisomerase IV 24.6 1.2E+02 0.0026 29.1 4.4 6 69-74 389-394 (742)
414 PTZ00400 DnaK-type molecular c 24.6 2E+02 0.0043 26.7 5.7 41 92-133 539-586 (663)
415 smart00856 PMEI Plant invertas 24.5 56 0.0012 22.8 1.8 28 48-75 70-97 (148)
416 TIGR00255 conserved hypothetic 24.5 1.6E+02 0.0035 25.1 4.8 20 96-115 219-238 (291)
417 PRK13923 putative spore coat p 24.5 2.2E+02 0.0047 23.2 5.3 31 97-127 111-148 (170)
418 PF07295 DUF1451: Protein of u 24.5 3E+02 0.0066 21.4 6.0 44 98-141 19-66 (146)
419 cd00687 Terpene_cyclase_nonpla 24.4 1.8E+02 0.0039 23.0 4.8 43 97-139 252-300 (303)
420 cd02656 MIT MIT: domain contai 24.4 2.1E+02 0.0046 18.6 4.9 22 49-70 20-41 (75)
421 COG0497 RecN ATPase involved i 24.3 1.7E+02 0.0038 27.7 5.4 66 57-128 263-328 (557)
422 cd07672 F-BAR_PSTPIP2 The F-BA 24.1 4E+02 0.0088 21.8 9.0 38 93-130 150-187 (240)
423 PF03963 FlgD: Flagellar hook 24.0 61 0.0013 22.9 1.9 14 115-128 32-45 (81)
424 PF14023 DUF4239: Protein of u 24.0 1.5E+02 0.0032 22.7 4.2 40 93-132 83-122 (209)
425 PRK06798 fliD flagellar cappin 24.0 1.7E+02 0.0038 26.0 5.1 12 47-58 329-340 (440)
426 TIGR03007 pepcterm_ChnLen poly 23.9 2E+02 0.0044 24.7 5.4 26 96-121 323-348 (498)
427 PF04340 DUF484: Protein of un 23.9 2.2E+02 0.0048 22.3 5.2 32 98-129 41-72 (225)
428 PF13094 CENP-Q: CENP-Q, a CEN 23.9 2.9E+02 0.0063 20.6 5.6 29 95-123 60-88 (160)
429 TIGR00161 conserved hypothetic 23.9 2.7E+02 0.0058 22.6 5.8 16 99-114 203-218 (238)
430 TIGR00996 Mtu_fam_mce virulenc 23.8 2.3E+02 0.0051 22.6 5.4 37 96-132 166-202 (291)
431 KOG3119 Basic region leucine z 23.8 59 0.0013 27.1 2.0 59 52-131 194-252 (269)
432 PRK09470 cpxA two-component se 23.7 3.9E+02 0.0085 21.5 8.3 23 95-117 218-240 (461)
433 PF06005 DUF904: Protein of un 23.6 2.5E+02 0.0055 19.5 4.9 13 97-109 25-37 (72)
434 cd07603 BAR_ACAPs The Bin/Amph 23.6 2.1E+02 0.0046 22.9 5.1 35 98-132 3-37 (200)
435 PF13094 CENP-Q: CENP-Q, a CEN 23.6 2E+02 0.0044 21.5 4.7 26 107-132 44-69 (160)
436 COG3879 Uncharacterized protei 23.6 2.1E+02 0.0046 24.6 5.4 15 98-112 58-72 (247)
437 PRK11147 ABC transporter ATPas 23.5 1.7E+02 0.0036 26.6 5.0 20 96-115 574-593 (635)
438 PF06034 DUF919: Nucleopolyhed 23.5 1.3E+02 0.0028 21.0 3.3 21 95-115 36-56 (62)
439 PF06160 EzrA: Septation ring 23.5 1.7E+02 0.0037 26.7 5.0 42 93-134 132-173 (560)
440 PF07813 LTXXQ: LTXXQ motif fa 23.4 1.9E+02 0.0041 18.8 4.1 24 93-116 51-76 (100)
441 PRK05560 DNA gyrase subunit A; 23.4 1.4E+02 0.0031 28.6 4.7 16 61-76 381-396 (805)
442 PRK14150 heat shock protein Gr 23.4 1.8E+02 0.0039 23.4 4.7 16 96-111 40-55 (193)
443 PTZ00186 heat shock 70 kDa pre 23.4 2.1E+02 0.0045 26.8 5.7 42 93-134 575-619 (657)
444 PF11172 DUF2959: Protein of u 23.4 4.5E+02 0.0098 22.1 7.8 25 50-74 120-144 (201)
445 cd09243 BRO1_Brox_like Protein 23.3 1.2E+02 0.0025 26.5 3.8 66 54-119 260-326 (353)
446 PRK08507 prephenate dehydrogen 23.2 1.9E+02 0.0041 22.9 4.8 32 98-129 238-270 (275)
447 PRK14011 prefoldin subunit alp 23.2 2.1E+02 0.0046 22.2 4.9 76 49-130 27-121 (144)
448 smart00864 Tubulin Tubulin/Fts 23.2 2.5E+02 0.0055 21.4 5.3 42 91-132 148-189 (192)
449 PF06320 GCN5L1: GCN5-like pro 23.1 1.7E+02 0.0037 21.9 4.2 31 98-132 55-85 (121)
450 TIGR00012 L29 ribosomal protei 23.1 1.1E+02 0.0023 19.9 2.8 18 100-117 8-25 (55)
451 PRK07502 cyclohexadienyl dehyd 23.0 2.3E+02 0.005 22.8 5.3 35 98-132 251-286 (307)
452 PF13174 TPR_6: Tetratricopept 22.9 1.3E+02 0.0027 15.6 2.8 21 55-75 13-33 (33)
453 PHA02107 hypothetical protein 22.9 1.2E+02 0.0025 25.8 3.6 24 97-124 191-214 (216)
454 TIGR03575 selen_PSTK_euk L-ser 22.9 97 0.0021 26.9 3.3 40 64-116 261-300 (340)
455 PF13870 DUF4201: Domain of un 22.9 3.4E+02 0.0074 20.5 6.3 40 95-134 96-135 (177)
456 PF11684 DUF3280: Protein of u 22.8 1.3E+02 0.0029 23.2 3.7 27 93-119 21-47 (140)
457 PF14197 Cep57_CLD_2: Centroso 22.8 1.2E+02 0.0025 21.0 3.0 18 97-114 47-64 (69)
458 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.8 2.6E+02 0.0057 20.5 5.1 31 98-128 99-129 (132)
459 PRK11820 hypothetical protein; 22.8 1.8E+02 0.004 24.8 4.8 20 96-115 216-235 (288)
460 PF11640 TAN: Telomere-length 22.7 1.5E+02 0.0033 22.1 3.9 38 98-135 78-120 (155)
461 TIGR01758 MDH_euk_cyt malate d 22.7 41 0.0009 28.4 1.0 16 46-61 148-163 (324)
462 PRK02224 chromosome segregatio 22.6 2.8E+02 0.0061 25.7 6.3 12 102-113 211-222 (880)
463 smart00338 BRLZ basic region l 22.6 2.2E+02 0.0048 18.3 5.6 18 96-113 25-42 (65)
464 PRK13752 putative transcriptio 22.6 3.5E+02 0.0075 20.5 5.9 31 98-132 85-115 (144)
465 COG3937 Uncharacterized conser 22.5 99 0.0021 23.9 2.9 18 96-113 89-106 (108)
466 CHL00137 rps13 ribosomal prote 22.5 2.3E+02 0.0049 21.4 4.8 19 90-108 44-62 (122)
467 smart00787 Spc7 Spc7 kinetocho 22.4 2E+02 0.0043 24.8 5.0 42 93-134 157-198 (312)
468 PF13713 BRX_N: Transcription 22.4 84 0.0018 20.1 2.1 18 118-135 12-29 (39)
469 COG3132 Uncharacterized protei 22.4 1.3E+02 0.0028 25.7 3.8 38 70-114 172-209 (215)
470 PF09813 Coiled-coil_56: Coile 22.4 1.5E+02 0.0032 22.6 3.8 43 55-111 46-91 (100)
471 smart00435 TOPEUc DNA Topoisom 22.4 4.4E+02 0.0096 24.1 7.4 56 50-121 246-301 (391)
472 PF12761 End3: Actin cytoskele 22.3 1.6E+02 0.0035 24.4 4.3 28 96-123 166-193 (195)
473 PF03962 Mnd1: Mnd1 family; I 22.3 4E+02 0.0087 21.1 8.8 33 97-129 110-142 (188)
474 PTZ00421 coronin; Provisional 22.3 1.6E+02 0.0035 26.4 4.6 27 103-129 466-492 (493)
475 PF06273 eIF-4B: Plant specifi 22.3 1.4E+02 0.003 28.2 4.3 25 107-131 399-423 (492)
476 PRK05086 malate dehydrogenase; 22.2 1.4E+02 0.003 25.0 4.0 29 93-121 283-311 (312)
477 PF13015 PRKCSH_1: Glucosidase 22.2 1.3E+02 0.0029 23.5 3.6 25 97-121 3-27 (154)
478 COG1729 Uncharacterized protei 22.2 2.2E+02 0.0048 24.4 5.2 35 95-130 61-95 (262)
479 PF10211 Ax_dynein_light: Axon 22.1 3E+02 0.0066 21.8 5.7 23 48-70 83-105 (189)
480 KOG3335 Predicted coiled-coil 22.1 2.3E+02 0.0049 23.7 5.1 31 93-123 102-132 (181)
481 PF13815 Dzip-like_N: Iguana/D 22.0 2E+02 0.0044 20.8 4.4 30 98-127 81-110 (118)
482 PRK00736 hypothetical protein; 22.0 2.7E+02 0.0058 18.9 5.6 25 96-120 4-28 (68)
483 PF14523 Syntaxin_2: Syntaxin- 21.9 1.8E+02 0.0038 19.6 3.8 17 57-73 7-23 (102)
484 cd07590 BAR_Bin3 The Bin/Amphi 21.9 2.7E+02 0.0059 23.0 5.5 37 94-130 8-44 (225)
485 PF07047 OPA3: Optic atrophy 3 21.9 1.2E+02 0.0026 22.7 3.3 19 97-115 112-130 (134)
486 PRK05724 acetyl-CoA carboxylas 21.9 1.4E+02 0.003 26.2 4.0 44 96-139 9-60 (319)
487 PF07352 Phage_Mu_Gam: Bacteri 21.9 1.9E+02 0.0041 21.6 4.3 30 96-125 27-56 (149)
488 PRK14162 heat shock protein Gr 21.9 2.7E+02 0.0059 22.7 5.5 23 93-115 35-57 (194)
489 cd05290 LDH_3 A subgroup of L- 21.8 62 0.0013 27.2 1.8 15 48-62 144-158 (307)
490 PF14769 CLAMP: Flagellar C1a 21.8 1.2E+02 0.0027 21.3 3.1 33 109-142 28-60 (101)
491 PF14712 Snapin_Pallidin: Snap 21.7 2.6E+02 0.0057 18.8 5.1 13 99-111 16-28 (92)
492 cd07591 BAR_Rvs161p The Bin/Am 21.7 3.2E+02 0.007 22.1 5.8 37 94-130 141-177 (224)
493 PHA02592 52 DNA topisomerase I 21.7 1.7E+02 0.0036 26.6 4.6 22 94-115 399-420 (439)
494 PF14282 FlxA: FlxA-like prote 21.7 3.2E+02 0.0069 19.7 5.9 19 96-114 18-36 (106)
495 PF01152 Bac_globin: Bacterial 21.6 1.6E+02 0.0034 20.4 3.6 24 93-116 97-120 (120)
496 COG5019 CDC3 Septin family pro 21.6 2.3E+02 0.005 25.8 5.4 35 96-130 327-361 (373)
497 PRK00461 rpmC 50S ribosomal pr 21.5 2E+02 0.0044 20.9 4.2 38 99-136 10-54 (87)
498 PF11853 DUF3373: Protein of u 21.5 86 0.0019 29.2 2.8 30 96-126 31-60 (489)
499 TIGR00606 rad50 rad50. This fa 21.5 2.3E+02 0.0051 28.3 5.8 39 96-134 828-869 (1311)
500 PF10849 DUF2654: Protein of u 21.4 2.5E+02 0.0053 20.3 4.5 34 98-133 15-48 (70)
No 1
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=95.98 E-value=0.018 Score=45.42 Aligned_cols=38 Identities=39% Similarity=0.553 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
+...+.+.--.|=+-+..||.+||.+|||||.+|-||-
T Consensus 105 ~~~~~~~er~el~e~v~~KN~qLk~iid~lR~~iweIN 142 (150)
T PF11315_consen 105 EYRQLLEERKELIEQVKQKNQQLKEIIDQLRNIIWEIN 142 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554455666788999999999999999999984
No 2
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=90.56 E-value=2 Score=30.00 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
-.+.++-|||+++|-++++ .+|. +..+ +|.-|++...||+++..|+..|+.|
T Consensus 27 ~~~~~~lk~Klq~ar~~i~----~lpg--------i~~s------------~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIR----ELPG--------IDRS------------VEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCC--------ccCC------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999866655 4443 2233 3445566666777777777666554
No 3
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.83 E-value=3.7 Score=32.31 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
.+|.-+.+|...++.||..|.+=- ...++. +... +.|++-|.+|.++.+.||..|..+-.
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr--~ELnAL-l~~~------~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKR--YEYNAL-LTAN------PPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HcCC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999886521 111111 1333 78999999999999999988776543
No 4
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=86.95 E-value=2.5 Score=31.87 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
..|.+||+.--...+|+..+=+--..|+.+++++|.+|.
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999985
No 5
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.51 E-value=2.3 Score=32.65 Aligned_cols=38 Identities=34% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
....+.+++++....|++||..++..+..|-.|.-.|-
T Consensus 151 ~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 151 LLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888999999999999999999999999987653
No 6
>KOG2829 consensus E2F-like protein [Transcription]
Probab=85.20 E-value=2 Score=38.16 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
.+-.||++||+....+|+-|..|+.+|+.||-|..
T Consensus 129 ~ss~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~ 163 (326)
T KOG2829|consen 129 TSSQDVSELEEERKKRMERIKKKAAQLQELIEQVS 163 (326)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999988863
No 7
>COG4387 Mu-like prophage protein gp36 [Function unknown]
Probab=85.19 E-value=0.82 Score=36.46 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLT 70 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~ia 70 (143)
+-|+||+||+.+|.=|+.+.+
T Consensus 82 ~Tdq~r~rYe~av~~L~~va~ 102 (139)
T COG4387 82 ATDQARQRYEDAVRFLEKVAS 102 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHc
Confidence 679999999999999888764
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.05 E-value=3 Score=31.51 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
..+.+|+..|..+...||+|+..-...+|.|-..|+.|.+-.
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888888888888888887777776543
No 9
>PLN02678 seryl-tRNA synthetase
Probab=84.25 E-value=2.5 Score=37.90 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||+-|-.-+..+..||+-...|+..-+.. +.+..+.+.|-+++..|++||......++.+-++|.+
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~-------------k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKL-------------KIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777888999888888763221 1222456788889999999999999999999999998
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
+..-|
T Consensus 104 ~~~~i 108 (448)
T PLN02678 104 KLKTI 108 (448)
T ss_pred HHHhC
Confidence 87654
No 10
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.17 E-value=1.6 Score=30.55 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||+-|-..+..+..||+--..|+.. +... .....+++.|-+++..|.++|......++.+-++|..
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~-------I~~~------~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKE-------IGKL------KKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH------CHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHH------hhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888999988888765 1000 0001467889999999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
+..-|
T Consensus 100 ~l~~i 104 (108)
T PF02403_consen 100 LLLSI 104 (108)
T ss_dssp HHCTS
T ss_pred HHHcC
Confidence 86543
No 11
>PLN02320 seryl-tRNA synthetase
Probab=84.10 E-value=3 Score=38.29 Aligned_cols=70 Identities=27% Similarity=0.277 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
||+-|..-+.-+..||+-..+|++.-+. +....++++|-+++..|+++|......++.+-++|.++
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~--------------~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKG--------------KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456678888888888776221 11124678899999999999999999999999999988
Q ss_pred Hhhh
Q 032332 131 ITDI 134 (143)
Q Consensus 131 I~Di 134 (143)
+.-|
T Consensus 164 ~l~i 167 (502)
T PLN02320 164 AQSI 167 (502)
T ss_pred HHhC
Confidence 7654
No 12
>smart00150 SPEC Spectrin repeats.
Probab=83.84 E-value=6.5 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.|..+++.+-++-..|++||..+...++.++..-+.|+..
T Consensus 27 ~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 27 GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999988888764
No 13
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=83.62 E-value=12 Score=30.52 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccc--cCC------CCCCCCCCCHHHHHHHHHHHHHH--HHHHHhhh
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEM--VSS------PVDSVSRSDEVEIDKLEERASLL--RKELANKN 117 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~--~~s------~v~~v~~~DqaEIekLEe~As~L--RkEi~~KN 117 (143)
+..=.+.++|-+.+-..||+.|+.+|.- -+.||. .+. ..+.....|++||++-+++.-.- ++|+.+..
T Consensus 50 ~~tp~~~k~~~~~~k~~Lr~~LasLP~P--~Nd~EI~lPe~e~~e~~~~~~~~eeDaad~d~r~~~~~~~~e~~e~~rRS 127 (231)
T PF11831_consen 50 GDTPRDEKARQKAAKSQLRAGLASLPKP--KNDYEIVLPEEEEEEDEEAEEEMEEDAADRDARERAEREEEEEKELKRRS 127 (231)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeecCCcccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444667888888999999999999987 455654 111 11123467999998876654444 44444544
Q ss_pred HHH
Q 032332 118 KYL 120 (143)
Q Consensus 118 ~~l 120 (143)
.+|
T Consensus 128 qvv 130 (231)
T PF11831_consen 128 QVV 130 (231)
T ss_pred HHH
Confidence 444
No 14
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=83.48 E-value=3.2 Score=36.37 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||+-|-.-+..+..||+-...+++.-+.... +..+.+.|-+++..|+++|....+.++.+-+++.+
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKR-------------KGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677788999999888877322111 11246779999999999999999999999999998
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 99 ~~~~i 103 (425)
T PRK05431 99 LLLRI 103 (425)
T ss_pred HHHhC
Confidence 87544
No 15
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=82.91 E-value=8.6 Score=32.19 Aligned_cols=64 Identities=13% Similarity=0.297 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 55 RHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..+|...++.|+..+...++. .+ .--..|+++|++....|.+|...-.++.+....+|+..-.+
T Consensus 26 ~~~Y~~ei~~L~~~i~~~~~~------~~---------~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~ 89 (298)
T PF11262_consen 26 KELYDEEIERLEKEISQMSRA------TI---------SKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDS 89 (298)
T ss_pred HHHHHHHHHHHHHHHHHhccc------cc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 358999999999999981111 11 23467999999999999999999999999999998876443
No 16
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.35 E-value=3.7 Score=27.74 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 88 VDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 88 v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
++.+.+.=+.+++.+++....|++++....+-++.+-.+|+.++
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555666666666666666666666666666666554
No 17
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.93 E-value=14 Score=28.45 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
-++..++.+|.+.+.||.-+...-.+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~ 73 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKS 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999888754433
No 18
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=79.08 E-value=6.5 Score=34.39 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||+-|-.-+..+..||+-...|++.-+.+ . +..+.+.+.|-+++..|+++|......++.+-+++.+
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~----~--------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKA----K--------GQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777788889999888888762210 0 1112237889999999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 102 ~~~~l 106 (418)
T TIGR00414 102 KLLSI 106 (418)
T ss_pred HHHhC
Confidence 77644
No 19
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=77.30 E-value=8.3 Score=30.07 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+...+..+...||+|+..++..++.++.+|.+.-.++
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999998876665
No 20
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.02 E-value=9.6 Score=34.60 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||+.|-+++..+..|++-...++.. +-.. .+....+++.|-+....|.++|...+..++.+.++|.+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~-------ig~~-----~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKE-------IGRA-----LKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----hhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 68999999999999999998888765 2111 01112278889999999999999999999999999988
Q ss_pred HHhhhc
Q 032332 130 LITDIS 135 (143)
Q Consensus 130 lI~DiS 135 (143)
++..|-
T Consensus 101 ~ll~ip 106 (429)
T COG0172 101 LLLTIP 106 (429)
T ss_pred HHHhCC
Confidence 887664
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.73 E-value=5 Score=41.70 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.--+++.|++++-|......|+.|..||.|+|+.+++
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999999999999999999999999999875
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.27 E-value=29 Score=29.14 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..|+.|++.|.++...+..+|+.+.+.+..|-.++..+
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888777777777777776666666665555544
No 23
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=75.16 E-value=4.6 Score=31.07 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCCCC-CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCH---HHHHHH-HHHHHHHHHHHHhhh
Q 032332 43 SGGSG-NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDE---VEIDKL-EERASLLRKELANKN 117 (143)
Q Consensus 43 ggg~G-ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~Dq---aEIekL-Ee~As~LRkEi~~KN 117 (143)
|+..| -|.+.++| |||.. +....+ .+ ..|+ ++++++ |+|...|+++...++
T Consensus 4 ~~~tg~kgv~~d~~-~~~~~---------------~~~~~~-~d-------~~~~~~e~~l~~~R~~R~~el~~~~~~~~ 59 (175)
T cd02987 4 GTNTGPKGVINDWR-KFKQL---------------KESEQE-DD-------DDDEDKEEFLQQYREQRMQEMHAKLPFGR 59 (175)
T ss_pred CCCCCCchhHHHHH-HHHhh---------------hchhhh-hh-------hhhhhHHHHHHHHHHHHHHHHHHhccccC
Confidence 45566 78999876 67777 111111 11 3344 488888 888999999877665
Q ss_pred HH
Q 032332 118 KY 119 (143)
Q Consensus 118 ~~ 119 (143)
.+
T Consensus 60 ~~ 61 (175)
T cd02987 60 RF 61 (175)
T ss_pred CC
Confidence 43
No 24
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=75.02 E-value=12 Score=27.11 Aligned_cols=35 Identities=37% Similarity=0.439 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+.||+||---+..||.++.+-...-|.|=+++..+
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999987777667776666543
No 25
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=74.16 E-value=12 Score=26.05 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
++.|+++...|++++..-++.++.+-+++..+...
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666666666666555443
No 26
>PRK04325 hypothetical protein; Provisional
Probab=73.47 E-value=14 Score=25.69 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
||.|-+-.....++|..-...|+.|.++|+++-
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555666777777777777777777764
No 27
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.14 E-value=7.7 Score=25.74 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
++||+||+.+...|.++|..-++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888876544
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.10 E-value=14 Score=25.48 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-|+.|-+-....+++|..-...|+.|.++|+++-.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35555556666777777777888888888887643
No 29
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.74 E-value=6.7 Score=28.13 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 87 PVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 87 ~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+++.+.+.=+..|+.+|++...|-|.+....+.++.+=.+||+++.
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445567777777777777777777777777778887764
No 30
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=72.27 E-value=19 Score=23.63 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K 116 (143)
.+.+..|...+..+|.-+.+.-.. -.+...+ .+.|++.|+.+-++...++.++...
T Consensus 51 ~~~~~~~~~~~~~~r~~~~~~r~~----l~~ll~~-----~~~D~~~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 51 RALMDEFRQEMRALRQELRAARQE----LRALLAA-----PPPDEAAIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCC-----SSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665443222 1111223 2889999999999999999888654
No 31
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=71.96 E-value=7.1 Score=34.06 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------------------------------hHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANK---------------------------------NKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~K---------------------------------N~~lK~LIdqlrdlI~Di 134 (143)
..||+||+-|....|+.|... -.-+|.+|+|+|+-|..|
T Consensus 218 ~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 218 AEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVVELKVLIEQMREQVQNI 289 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999987322 135799999999988654
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.79 E-value=15 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
++|++||++...|+++|......++.++
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 33
>PRK01203 prefoldin subunit alpha; Provisional
Probab=71.65 E-value=10 Score=29.41 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCcc------------ccccccc--------cCCCCCCCCCCCHHHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSH------------KAKSFEM--------VSSPVDSVSRSDEVEIDKLEERASLL 109 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~------------ka~~~e~--------~~s~v~~v~~~DqaEIekLEe~As~L 109 (143)
+|..|+.||+.+..+|...- -.+.. +++-.++ ++- .|++.-+.-|++|+++...|
T Consensus 25 ~L~~a~se~~~~ie~L~~~~--~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy---~VEK~~e~kie~L~~~ie~L 99 (130)
T PRK01203 25 SLNKTLSEVQQTISFLSDNE--LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV---YIAEERERTIERLKENLEDL 99 (130)
T ss_pred HHHHHHHHHHHHHHHHHccc--cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe---EEEecHHHHHHHHHHHHHHH
Confidence 57889999998888887711 00110 0111110 222 24466677899999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 032332 110 RKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 110 RkEi~~KN~~lK~LIdqlrdlI 131 (143)
.+=|..|+..++.+.+++-.|-
T Consensus 100 e~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 100 KDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 34
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=71.41 E-value=47 Score=27.03 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-hhHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN-KNKYLK 121 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~-KN~~lK 121 (143)
..|+.||-+|-.+-....+.....-+. + .++ .+.+.|++|++.++...+.++.. +|.|..
T Consensus 133 ~~l~kaKk~Y~~~cke~e~a~~~~~~~---~----~d~------~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 133 KKVEKAKKAYHAACKAEKSAQKQENNA---K----SDT------SLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---c----cCc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888766555544433322 1 122 45578999999998888877743 444443
No 35
>PRK00295 hypothetical protein; Provisional
Probab=71.21 E-value=17 Score=24.80 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+-||.|-+-.....++|..-...|+.|.++|+++-
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666667777777777888888888765
No 36
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.76 E-value=11 Score=27.95 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
||.++.+...|-|......+-++.+=++||+++.
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556666666666664
No 37
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.06 E-value=14 Score=30.40 Aligned_cols=39 Identities=10% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+-.|+.|+.....||=.|+..+-.|.++..+-||+-.||
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888899999999999999999888887765
No 38
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=69.94 E-value=13 Score=28.37 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHhhhccccCC
Q 032332 101 KLEERASLLRKELANKNKYLKR---LIDQLRDLITDISTWQSP 140 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~---LIdqlrdlI~DiS~Wqsp 140 (143)
.|+|.+..||.|+.+|..-+.. .|++.-.++.|+..|+.+
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~k~ 81 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQHKV 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5788888889999998876654 477777888888887654
No 39
>PRK11637 AmiB activator; Provisional
Probab=69.85 E-value=14 Score=31.65 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.+|+.++++...|.++|......++.+-++|..++..+
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555443
No 40
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.63 E-value=13 Score=30.82 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+.++++|+++...+++|+...++.++.+-.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998777666665555543
No 41
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=69.18 E-value=25 Score=21.98 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 56 HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 56 ~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
++|...+..|-.-|...-.- .... .+ +.|..+++.+-++...+.+||..+...+..+.+.-..|+.
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~-------l~~~---~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAK-------LSSS---EP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HCSC---TH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhCC---CC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666554222 1111 11 6788999999999999999999999999999988888754
No 42
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.09 E-value=20 Score=25.70 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
-|+.|+++...|.++|..+...+..+...|+.
T Consensus 95 r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 95 KIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655554
No 43
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.59 E-value=16 Score=29.32 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
-.+|.++|+++...|+.++..-+ .++.=-++||+|+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~-~l~~en~~L~~lL 109 (276)
T PRK13922 74 LREENEELKKELLELESRLQELE-QLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 35677788888777777766443 2333335666654
No 44
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=67.43 E-value=13 Score=35.16 Aligned_cols=81 Identities=28% Similarity=0.351 Sum_probs=52.8
Q ss_pred chhHHHH----HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCC-----------HHHHHHHHHHHHHHHHHH
Q 032332 49 SALDEAR----HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSD-----------EVEIDKLEERASLLRKEL 113 (143)
Q Consensus 49 gaLDeAR----~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~D-----------qaEIekLEe~As~LRkEi 113 (143)
..+||.- ..-+.-+.-||++|-=+| .|-..|+.-.. ..-+.- +...++||..+..||+|+
T Consensus 191 ~~~Desl~~~ll~L~arm~PLraSLdfLP--~Ri~~F~~ra~---~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~EL 265 (683)
T PF08580_consen 191 SPQDESLYSSLLALFARMQPLRASLDFLP--MRIEEFQSRAE---SIFPSACEELEDRYERLEKKWKKLEKEAESLKKEL 265 (683)
T ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567762 223556778999996555 46666664221 111222 234568999999999999
Q ss_pred Hhh--hHHHHHHHHHHHHHHhhh
Q 032332 114 ANK--NKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 114 ~~K--N~~lK~LIdqlrdlI~Di 134 (143)
..+ |.+...|++|+..++.++
T Consensus 266 iedRW~~vFr~l~~q~~~m~esv 288 (683)
T PF08580_consen 266 IEDRWNIVFRNLGRQAQKMCESV 288 (683)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 876 677788888887777654
No 45
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.25 E-value=20 Score=27.84 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..+++|+++...+|++|..++..+..+-++|...
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555444444444433
No 46
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=66.65 E-value=5.9 Score=38.99 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhhhccccCCCC
Q 032332 92 SRSDEVEIDKLEERASLLRKELAN--------KNKYLKRLIDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~LRkEi~~--------KN~~lK~LIdqlrdlI~DiS~Wqspcs 142 (143)
+..+.+|||++=+-...+|+|+.. .+..||.-=--+.+++.|- |..|+|
T Consensus 847 E~eskeelD~f~~al~~I~~e~~~~~~g~~~~~~~~l~~ap~~~~~~~~~~--w~~~y~ 903 (939)
T TIGR00461 847 ESESLEELDRFCDAMIAIKEEINALVAGQPKGQDNPLKNAPHSLQSLITSE--WWHPYS 903 (939)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHhhCCCCHHHhhcCC--CCCCcC
Confidence 356899999999999999999998 7778887666677788755 999987
No 47
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.39 E-value=32 Score=22.08 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.||..|+++...|++|...-+..++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666655544444433333
No 48
>PRK02119 hypothetical protein; Provisional
Probab=66.33 E-value=24 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
-|+.|-+-....+++|..-...|+.|.++|+++-
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555555556667777777777888888888764
No 49
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.15 E-value=24 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+.=+..++.|+.+...|-+++....+.++.|-..|+++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666666666666666666554
No 50
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=66.12 E-value=42 Score=25.03 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=43.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHhhhHHHH--
Q 032332 47 GNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLE---ERASLLRKELANKNKYLK-- 121 (143)
Q Consensus 47 GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLE---e~As~LRkEi~~KN~~lK-- 121 (143)
....|.+.|.+=-.+++.||..+..+...... +.-...+..+. ++...+|+.+........
T Consensus 26 ~~~~l~~qr~~tD~a~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~L~~~R~~vd~~~~~~~~~ 91 (247)
T PF08376_consen 26 FRAELKAQRAATDRAIAELRRALADIDDSDSD--------------EELRDRLQEILNALDQLPQLRQQVDNRSIDPDEA 91 (247)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCTT--H--------------H-HHHHHHHHHHHGGGHHHHHHHHHHT-S-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccc--------------hhHHHHHHHHHHHHHhHHHHHHHHhcCCCChHHH
Confidence 36889999999999999999999976655100 00123334433 346677887776653333
Q ss_pred -----HHHHHHHHHHhh
Q 032332 122 -----RLIDQLRDLITD 133 (143)
Q Consensus 122 -----~LIdqlrdlI~D 133 (143)
.+|+.|.+++..
T Consensus 92 ~~~Y~~~i~~ll~~~~~ 108 (247)
T PF08376_consen 92 FDAYTELIDSLLDLIDA 108 (247)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444555444443
No 51
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.76 E-value=8.3 Score=28.18 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~l 120 (143)
-|||+|||..+..|+.++.-+.-|
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999887766544
No 52
>PRK04406 hypothetical protein; Provisional
Probab=65.69 E-value=24 Score=24.66 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
-||.|-+-.....++|..-...|+.|.++|+++-
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555666666666677777777777754
No 53
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=65.39 E-value=21 Score=28.96 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
.|+-|+||.+.-||.-|..|.++...|=.+
T Consensus 36 ~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 36 SELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467789999999999999999998666433
No 54
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.37 E-value=24 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-|+.|+++...|.++|..+++.+..+..+|.++
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555543
No 55
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=65.37 E-value=33 Score=33.76 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEE 104 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe 104 (143)
|.|-.|+.|.+.|-.+|+-.|. . .++++||+||=+
T Consensus 496 G~ls~A~~~Lr~AQ~aL~eAL~---------------~------gAsdeEI~~Lm~ 530 (851)
T TIGR02302 496 GDLSDAERRLRAAQDALKDALE---------------R------GASDEEIKQLTD 530 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---------------c------CCCHHHHHHHHH
Confidence 6788888888899988887664 2 567889999854
No 56
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=64.90 E-value=6.2 Score=27.96 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhh
Q 032332 92 SRSDEVEIDKLEERASLLRKELAN---KNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~LRkEi~~---KN~~lK~LIdqlrdlI~Di 134 (143)
.+.|..+.+.|++=...+++.+.. .-..-+-|.|+|..+|.++
T Consensus 17 ~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~F 62 (85)
T PF14357_consen 17 PPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERF 62 (85)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHH
Confidence 356666666666555555555555 2233455666666665543
No 57
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=64.60 E-value=11 Score=36.43 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
+||||||+++= +.|.+-.++|..||...-.||+.+.|=+
T Consensus 377 ~AEIekmK~~H-ak~m~k~k~~s~lk~AE~~LR~a~~~p~ 415 (669)
T PF08549_consen 377 NAEIEKMKARH-AKRMAKFKRNSLLKDAEKELRDAVEDPS 415 (669)
T ss_pred HHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHhccCCcc
Confidence 67888886542 3455667889999999999999988543
No 58
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.58 E-value=16 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.|+.+|+-+..|+-++.+-.|..+.+||-.++++.
T Consensus 2 ~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~ 37 (200)
T cd07638 2 AALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQ 37 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999998887777664
No 59
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=64.56 E-value=29 Score=29.06 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
..++.||+..++.|...|++++.. .+..++..=..=.+|.|.-++.|..+|+-|..-..+-..|++.-
T Consensus 34 rdsq~eaqeQF~sALe~f~sl~~~------------~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EW 101 (201)
T PF11172_consen 34 RDSQQEAQEQFKSALEQFKSLVNF------------DGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEW 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999987642 12222222233457788888888888888888887777777766
Q ss_pred HHHHh
Q 032332 128 RDLIT 132 (143)
Q Consensus 128 rdlI~ 132 (143)
++=|.
T Consensus 102 e~EL~ 106 (201)
T PF11172_consen 102 EQELD 106 (201)
T ss_pred HHHHH
Confidence 65443
No 60
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=64.09 E-value=9 Score=29.17 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERA 106 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~A 106 (143)
.-+-|.||++|+.++|.- .-.+.|| ...++|.++|+++.
T Consensus 64 y~~Q~k~Ye~a~~~~~~~-------~lqkRle----------~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 64 YMQQRKDYEEAVDQLTNE-------ELQKRLE----------ELSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHHHHHHHHhHH-------HHHHHHH----------hCCHHHHHHHHHHh
Confidence 446789999999998865 2233455 56778888887754
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.59 E-value=13 Score=30.22 Aligned_cols=89 Identities=27% Similarity=0.299 Sum_probs=52.6
Q ss_pred CCCCCCCCchhH------HHHHHHH---HHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 032332 41 DSSGGSGNSALD------EARHRYK---TSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 41 d~ggg~GggaLD------eAR~RYK---~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRk 111 (143)
|.+|-.||=.-+ .+|.|+. .-++.|++-++-+-+.-+....++.+. + ...+.+|..|+++-..|++
T Consensus 72 ~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~-~----~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 72 DSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK-V----AQSDSVINGLKEENQKLKN 146 (206)
T ss_pred eCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHH
Confidence 446667764433 4566653 446777777777765544333333211 1 1245668889999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhh
Q 032332 112 ELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 112 Ei~~KN~~lK~LIdqlrdlI~Di 134 (143)
|+..-..-+..|-.++.++-.++
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776655555555555544443
No 62
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=63.19 E-value=2.9 Score=32.82 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
+..+..++-++.+.+=++|...++.+..|+.|||.++.+|-
T Consensus 104 ~~~~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~Ir 144 (211)
T PF04546_consen 104 DSKKYQKLREELAEEFMEIKLSPKQIDRLVEQLREIVERIR 144 (211)
T ss_dssp -SHHHHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888999999999999999999988773
No 63
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=63.03 E-value=18 Score=25.12 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+.-++.|++|...|++.+..-++.++.+-+++..
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777777777777766666665555544443
No 64
>PF14645 Chibby: Chibby family
Probab=62.75 E-value=32 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..+..+..+|.++-..|++|-..-....+.|+|+|-+-
T Consensus 67 ~~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 67 TADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999988555555555666666543
No 65
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=62.67 E-value=27 Score=28.52 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..-+.||++++-+...++..+..-+..++++++++.++..+
T Consensus 240 A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~ 280 (306)
T PF04888_consen 240 ADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMES 280 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777777666544
No 66
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=62.66 E-value=21 Score=32.45 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..-+..+++|+++..++++|++.-.+.++.+.++..+++.
T Consensus 211 ~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999988888888887766654
No 67
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=61.82 E-value=30 Score=26.26 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..+..|+.||.++-..|-+| |.+||.=|+-|.||++-
T Consensus 68 ~~~~~e~~rlkkk~~~LeEE----NNlLklKievLLDMLte 104 (108)
T cd07429 68 GVSGREVLRLKKKNQQLEEE----NNLLKLKIEVLLDMLAE 104 (108)
T ss_pred CCchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56788999999887776665 67777777777777654
No 68
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.73 E-value=27 Score=28.02 Aligned_cols=6 Identities=50% Similarity=0.828 Sum_probs=2.6
Q ss_pred hhHHHH
Q 032332 50 ALDEAR 55 (143)
Q Consensus 50 aLDeAR 55 (143)
.+|++.
T Consensus 22 ~~~~~~ 27 (251)
T PF11932_consen 22 TLDQAQ 27 (251)
T ss_pred cHHHHH
Confidence 344444
No 69
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=61.49 E-value=32 Score=23.80 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
+.+..++.+|+++...|++++...+...+.+-.++
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877766665554443
No 70
>PRK00846 hypothetical protein; Provisional
Probab=61.22 E-value=33 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+=||.|-+-.....++|..-...++.|.++|+++..
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346666666677788888888888888888888764
No 71
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=61.09 E-value=16 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
..++.|.|+||.|...||-+|..+...-|.-+
T Consensus 75 ~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~ 106 (120)
T PF04521_consen 75 SDLNLELEKLERREEQLKTQIQVLTAAAKLAK 106 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45789999999999999999998877666544
No 72
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=60.93 E-value=28 Score=24.78 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.=++.|+.+...|.+.+..-++.++.+-+|+..+.
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555555555443
No 73
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=60.34 E-value=20 Score=23.77 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
++++++|++++..||+|+.....
T Consensus 1 ~~~~~~l~~ei~~L~~el~~~r~ 23 (68)
T PF00631_consen 1 KQEKDQLKREIEQLRQELERERI 23 (68)
T ss_dssp -THHHHHHHHHHHHHHHHTS---
T ss_pred ChHHHHHHHHHHHHHHHHcccce
Confidence 35788999999999999988443
No 74
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=60.09 E-value=16 Score=26.26 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKE-----------------LANKNKYLKRLIDQL 127 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkE-----------------i~~KN~~lK~LIdql 127 (143)
+....+-++|.+++-.|+.- |.+.|.+|..||+-|
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666643 346688888888766
No 75
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.91 E-value=22 Score=28.63 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+.|+.+|.-++.|+-+|.+-+|..|.+||-=+.++
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~ 36 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYA 36 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998888755444
No 76
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=59.52 E-value=13 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
-+...++...|+++|..-+..+..+-+++.-+-..+..||
T Consensus 65 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 65 KESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3556677777888888877777777777777777777775
No 77
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.33 E-value=26 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+-|+.|-+-.-...++|..-...++.|.++|+++-
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666666666667777777777664
No 78
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.49 E-value=38 Score=26.29 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
-..|++++++|...||+++...++.++..=..+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888877666655443333
No 79
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=58.27 E-value=42 Score=23.48 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
|..+++.+-++-..+++++..+...+..+...-+.|+...
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~ 70 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEG 70 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999998888877643
No 80
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.25 E-value=41 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
.+|++||++...||+.|......+..++.+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666555555544
No 81
>PRK11637 AmiB activator; Provisional
Probab=58.09 E-value=32 Score=29.53 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
-+.+++.++++...+.++|...++.++.+..+|..+-..|
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766666666666666554443
No 82
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=57.91 E-value=33 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
..||.||..|...+|+-|....
T Consensus 14 ~EEl~RL~sH~~~f~~~l~~~~ 35 (87)
T PF08340_consen 14 SEELVRLKSHLKQFRELLESEG 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999888776543
No 83
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=57.78 E-value=26 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
=+.+|++|++|...|.+.+..+...++.=..+|-.+|.
T Consensus 198 l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 198 LNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLIS 235 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444445555444
No 84
>PRK14148 heat shock protein GrpE; Provisional
Probab=57.70 E-value=15 Score=29.95 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
+.|++.|+++...|++++.
T Consensus 39 ~~e~~~l~~~l~~l~~e~~ 57 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCD 57 (195)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445556666555555554
No 85
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.63 E-value=37 Score=26.39 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
+..|+++...|..+|..|++.+-.|-|-+
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555544
No 86
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=57.35 E-value=32 Score=28.77 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+|-++|.++...|++++...+..++.=-++||+|+
T Consensus 73 ~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 73 YENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555544444443333333444445566554
No 87
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.07 E-value=34 Score=23.46 Aligned_cols=34 Identities=12% Similarity=0.361 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.|+-++.+-+.||++++.-+..+|.|++ |-++++
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs 48 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLS-LYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3666677777777777777777777765 344444
No 88
>smart00338 BRLZ basic region leucin zipper.
Probab=56.94 E-value=39 Score=21.90 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA 114 (143)
Q Consensus 98 EIekLEe~As~LRkEi~ 114 (143)
+++.|+..-..|+.++.
T Consensus 34 ~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 34 KVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 89
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=56.89 E-value=25 Score=23.23 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 100 DKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
+.+.+....|+.++..+...||.+|
T Consensus 22 ~~i~~~~~~L~~~i~~~~~eLr~~V 46 (87)
T PF08700_consen 22 KEIRQLENKLRQEIEEKDEELRKLV 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677888888888887765
No 90
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.76 E-value=33 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.-|+.|-......|+.|.+-...|+.|++.|.++=
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667777778889999999999999999988863
No 91
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=56.38 E-value=33 Score=29.58 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.++|+++-..|-+|+..|.+.|..|=.+|..++.
T Consensus 109 ~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 109 QLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555666667777888888888888777777764
No 92
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=56.35 E-value=33 Score=31.78 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.-+..+++|+++..+|+++++.-...++.++++.++.|.
T Consensus 226 ~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~ 264 (759)
T PF01496_consen 226 TPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELE 264 (759)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999999999888888888777766544
No 93
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=56.34 E-value=1.2e+02 Score=25.96 Aligned_cols=64 Identities=13% Similarity=0.288 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
++.||-.|-.|--.-+.......|. -.+. .+.+++++||++++.-.+.+...--..-+.-|+.|
T Consensus 135 v~~aKk~Y~~aCk~e~~A~~~~~~~-------~~d~------~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L 198 (258)
T cd07679 135 VEAAKKAYHTACKEEKLATSREANS-------KADP------ALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKEL 198 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc-------ccCC------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887766666554444333 1222 34578999999999999999887666555555555
No 94
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=56.10 E-value=33 Score=24.43 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKY--------LKRLIDQLRD 129 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~--------lK~LIdqlrd 129 (143)
.+..||+.++.....|+.=|..||+. +|.++..+++
T Consensus 69 ~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~i~~ 112 (121)
T PF14276_consen 69 IEHQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEHIPE 112 (121)
T ss_pred ecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999853 5555555554
No 95
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=55.94 E-value=10 Score=37.38 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhhhccccCCCC
Q 032332 93 RSDEVEIDKLEERASLLRKELAN--------KNKYLKRLIDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~--------KN~~lK~LIdqlrdlI~DiS~Wqspcs 142 (143)
.-+.+|||+|=+-.-.+|+|+.. .+..||.-=--..+++.|- |..|+|
T Consensus 888 ~~skeelDrf~~al~~i~~e~~~~~~g~~~~~~~~l~~ap~~~~~~~~~~--w~~~y~ 943 (993)
T PLN02414 888 SESKAELDRFCDALISIREEIADIENGKADRENNVLKGAPHPPSLLMADK--WDKPYS 943 (993)
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhcCCCChHHhhcCC--CCCCcC
Confidence 36889999999999999999997 7777776655566677644 999986
No 96
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=55.77 E-value=61 Score=31.60 Aligned_cols=53 Identities=28% Similarity=0.503 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
|.|..|..|.+.|-.+|+-.|. . .++++||+||=+ +||+-+ |+|++.|-.|+.
T Consensus 465 G~ls~A~~~Lr~AQe~L~eAL~---------------~------gAs~eEI~rLm~---eLR~A~---~~ym~~LAeq~~ 517 (820)
T PF13779_consen 465 GDLSDAERRLRAAQEALREALE---------------R------GASDEEIARLMQ---ELREAM---QDYMQALAEQAQ 517 (820)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH---------------c------CCCHHHHHHHHH---HHHHHH---HHHHHHHHHHhH
Confidence 4588899999999999987764 1 456799998854 566554 344444444443
No 97
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=55.70 E-value=31 Score=26.94 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
|+...+.|-+....|++++..+...++.+|..|+++=.+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~ 139 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDK 139 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888899999999999999999998888776544
No 98
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.55 E-value=30 Score=27.23 Aligned_cols=34 Identities=44% Similarity=0.603 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHhhh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLI--DQLRDLITDI 134 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LI--dqlrdlI~Di 134 (143)
..|..||||-+.|++| |..||.|+ +||..|-+..
T Consensus 74 ~qI~eL~er~~~Le~E----N~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 74 EQIRELEERNSALERE----NSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhhCCHHHHHHHHHhc
Confidence 4577788888887766 66677765 5665554443
No 99
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=55.51 E-value=42 Score=28.15 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH
Q 032332 53 EARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLI 131 (143)
Q Consensus 53 eAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI 131 (143)
+-|.||...+..|....+++.+.+++..+- .++.-++.=...+||-..... ...+.+-.++++||
T Consensus 65 ~~r~~F~~~~~~l~~~~~l~~p~~~a~~~~--------------~d~~~f~~ir~~i~k~~~~~~~~~~~~~~~~i~~Li 130 (335)
T PF11867_consen 65 ERRKRFLKLVKELSKAYALCLPDPEAEEYR--------------DDIAFFQAIRAAIRKLYSDDDGPDIKEVEEKIRQLI 130 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--------------HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998885544433 345444444444444333333 34445555555554
Q ss_pred h
Q 032332 132 T 132 (143)
Q Consensus 132 ~ 132 (143)
.
T Consensus 131 d 131 (335)
T PF11867_consen 131 D 131 (335)
T ss_pred H
Confidence 4
No 100
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=55.45 E-value=23 Score=33.84 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA-------NKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~-------~KN~~lK~LIdqlrdlI 131 (143)
+..+-||++|++++..|++||. ++++..+.++++|+++-
T Consensus 423 ~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eik 468 (800)
T TIGR01063 423 RLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIK 468 (800)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3445677777777777777764 55666677788877753
No 101
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=55.40 E-value=55 Score=21.19 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
...|+.||+++..|-.| |..|+.-+++|...+
T Consensus 25 k~~~~~Le~~~~~L~~e----n~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 25 KQYIEELEEKVEELESE----NEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 35677788777765443 444444444444443
No 102
>PRK05367 glycine dehydrogenase; Provisional
Probab=55.39 E-value=12 Score=36.66 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhhhccccCCCC
Q 032332 93 RSDEVEIDKLEERASLLRKELAN--------KNKYLKRLIDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~--------KN~~lK~LIdqlrdlI~DiS~Wqspcs 142 (143)
..+.+|||+|=+-...+|+||.. .+..||.-=--+.+++.|- |..|+|
T Consensus 856 ~~s~~elDr~~~al~~i~~e~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~--w~~~y~ 911 (954)
T PRK05367 856 SESKAELDRFCDAMIAIRAEIDEVEAGEWPAEDNPLKNAPHTAADLVADE--WDHPYS 911 (954)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchhhhCCCCHHHhccCC--CCCCCC
Confidence 46889999999999999999999 8888887766677777754 999986
No 103
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=55.11 E-value=99 Score=24.08 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.-|++.+.++|++....++++..-|..||.-+-+|-++...
T Consensus 145 ~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~ 185 (216)
T cd07599 145 LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADE 185 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46899999999999999999999999999866666665543
No 104
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=54.96 E-value=34 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.|-.|||.+..+|.++.+-+|..|.+++-.+.++.
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~ 37 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVE 37 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 47789999999999999999999999988877654
No 105
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=54.77 E-value=29 Score=29.14 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhhhccc
Q 032332 96 EVEIDKLEERASLLRKELA-NKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~-~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
+..++.++++-..+-+|+. .....+...+++|+.++.+++.-
T Consensus 61 ~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~~~l~~~l~~~~~~ 103 (295)
T cd04259 61 HSLFNAIQSRHLNLAEQLEVDADALLANDLAQLQRWLTGISLL 103 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 3446677776666666663 22346778888999988777543
No 106
>PRK00736 hypothetical protein; Provisional
Probab=54.75 E-value=53 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
||.|-+-.....++|..-...|+.|.++|+++-
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444445555666666666777777777654
No 107
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.56 E-value=29 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.+|.++||++....-++++.-++.+..|..|.-+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 108
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=53.41 E-value=30 Score=29.32 Aligned_cols=39 Identities=36% Similarity=0.500 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHhhhc
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRL-----IDQLRDLITDIS 135 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~L-----IdqlrdlI~DiS 135 (143)
.|+.|+||..+-||.=|+.|.+|...| |.-|.+|-.||+
T Consensus 51 ~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnis 94 (208)
T KOG4010|consen 51 TELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNIS 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 567899999999999999999998666 444555555554
No 109
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=53.00 E-value=28 Score=25.08 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPV-DSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v-~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
++-++-.+|-.+..-|+.=+....... ..++.....+. .+-....++||++|+++.-.|++|.. .||..+.
T Consensus 31 sv~evA~e~gIs~~tl~~W~r~y~~~~-~~~~~~~~~~~~~~~~~~~~~ei~~L~~el~~L~~E~d----iLKKa~~ 102 (121)
T PRK09413 31 TVSLVARQHGVAASQLFLWRKQYQEGS-LTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENE----LLKEAVE 102 (121)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHhhcc-cccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 455555567666666666655543210 01111000000 00011246777777777777776654 5655543
No 110
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=52.90 E-value=50 Score=22.56 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhh
Q 032332 122 RLIDQLRDLITDI 134 (143)
Q Consensus 122 ~LIdqlrdlI~Di 134 (143)
.++|++|.+|.+|
T Consensus 112 ~~~~~i~~~~~~~ 124 (138)
T PF05227_consen 112 QLMDQIRQLLEQI 124 (138)
T ss_dssp -HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677777777765
No 111
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=52.36 E-value=24 Score=28.09 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~ 115 (143)
...++|++||.+...||+.+.+
T Consensus 179 ~~~~~i~~L~kei~~L~~~~~k 200 (221)
T PF14335_consen 179 ERLEQIEKLEKEIAKLKKKIKK 200 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999988864
No 112
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=51.99 E-value=55 Score=20.19 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELAN------KNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~------KN~~lK~LIdqlrdlI~ 132 (143)
.+|.-|-+++..|++.+.. .-..|..++++++.|..
T Consensus 2 vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ 43 (46)
T cd00677 2 VQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLK 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHH
Confidence 4677888888999988885 45678888999988865
No 113
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.76 E-value=60 Score=24.11 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELAN----------KNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~----------KN~~lK~LIdqlrdlI~Di 134 (143)
.|..||++...|=.+|.. .|..|+.=-++||+.|...
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444433 4455555556788877654
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.66 E-value=1.5e+02 Score=25.53 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.-|++|.++|.+....+-.+|..|.+-+..+=+||.++-.+
T Consensus 200 ~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766666666666666665555555554443
No 115
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=51.54 E-value=56 Score=26.04 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..||+.++.-|+.-++ +.++.++.
T Consensus 126 ~~L~~~~~~~~~~~~~-~~~~~~~~ 149 (349)
T PF06050_consen 126 DKLREAIELYNEAREL-LREIYELR 149 (349)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhhhhchHH-HHHHHHHh
Confidence 3567777777766666 66666665
No 116
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.44 E-value=54 Score=22.81 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+.=+..|+.|+++...|.++|..++..+..|..+|+.+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467889999999999999999999999999988875
No 117
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.21 E-value=69 Score=21.52 Aligned_cols=39 Identities=38% Similarity=0.517 Sum_probs=32.7
Q ss_pred CHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEV-EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 Dqa-EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
|.+ =++.|+++...|.++|..-.+.++.+..+|.++-..
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 467899999999999999999999999999887554
No 118
>PRK13410 molecular chaperone DnaK; Provisional
Probab=51.00 E-value=46 Score=30.96 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 90 SVSRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 90 ~v~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
...+.++.||+++.+++..+ |+.++.|| .+..||.++|+.+.+.
T Consensus 498 ~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn-~~e~~i~~~~~~l~~~ 548 (668)
T PRK13410 498 GASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRN-RALTLIAQAERRLRDA 548 (668)
T ss_pred ccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 34578899999988777643 33344455 6788999999988763
No 119
>PRK05560 DNA gyrase subunit A; Validated
Probab=50.84 E-value=29 Score=33.09 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANK-------NKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~K-------N~~lK~LIdqlrdlI 131 (143)
+..+-||+||++++..|.+||..- ++..+.+|++|+++-
T Consensus 426 ~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ik 471 (805)
T PRK05560 426 RLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIK 471 (805)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344567888888888887777643 444566677777653
No 120
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.70 E-value=56 Score=30.27 Aligned_cols=63 Identities=16% Similarity=0.327 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHhh
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSR---SDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~---~DqaEIekLEe~As~LRkEi~~K 116 (143)
..+.+..||..-+..-+.+..+|+-++-.+.+- .|+.++. -+.++|.+..+++..|++|+...
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~---~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKK---RLEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665443333221 1111111 24566777777777777666543
No 121
>PF14854 LURAP: Leucine rich adaptor protein
Probab=50.69 E-value=39 Score=26.58 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh-hHHHHHH---------HHHHHHHHhhhccccCCCC
Q 032332 94 SDEVEIDKLEERASLLRKELANK-NKYLKRL---------IDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~K-N~~lK~L---------IdqlrdlI~DiS~Wqspcs 142 (143)
.....-..|+.+...||+|+..- ...+|+| |+-+|=|+.+-..-.+|||
T Consensus 12 ~~~~~~~~Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~KWlmEEr~~l~s~~S 70 (121)
T PF14854_consen 12 SPEKDLSNLDAKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVKWLMEERGALTSRCS 70 (121)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccCCcc
Confidence 34455678999999999998753 3344433 6677888888888888887
No 122
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=50.15 E-value=22 Score=25.25 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
++||-+||++.+.|+..+.
T Consensus 67 E~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 67 EAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654
No 123
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=49.45 E-value=20 Score=32.18 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
...+...++||.++..||++-......||.|=
T Consensus 76 ~~e~~r~~~~~~~aeel~~~~~~eq~rlk~le 107 (387)
T PRK09510 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLE 107 (387)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888899999999888888887764
No 124
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=49.35 E-value=59 Score=26.31 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.-..+.+.+|++-..+-++..+-.+.+|.++|.++.|.+
T Consensus 7 ~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~ 46 (224)
T cd07591 7 RTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTS 46 (224)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445789999999999999999999999999999998764
No 125
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.33 E-value=33 Score=23.56 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 032332 99 IDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~l 120 (143)
|+.|++|...|+.||++-...+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888887654433
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.96 E-value=52 Score=27.96 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-+.|+++||+.-..|++||..--+....|-.++++|
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777766666555555555554443
No 127
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.94 E-value=47 Score=20.95 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 103 EERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 103 Ee~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
|.+..+..+-|.+++.+||.=+.|||.
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666677789999999999985
No 128
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=48.37 E-value=59 Score=22.55 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..=+.-|+.|+++...|++++...+..++.+.+.|+.+.
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567889999999999999999999888888877664
No 129
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=48.12 E-value=42 Score=31.91 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
..-|++||++....|.++|+.-++.|+-|.+-++
T Consensus 402 t~~e~~k~~~e~~~l~~~i~~~~~~L~~~~~~~~ 435 (635)
T PRK09631 402 SLFDIDKNQKEIRILNKELKSVEKNLKSIKGYAI 435 (635)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888776666655444433
No 130
>PRK14160 heat shock protein GrpE; Provisional
Probab=48.09 E-value=49 Score=27.41 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
..+++.+..|+++...|..++......++.|-|++..+..|+
T Consensus 50 ~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef 91 (211)
T PRK14160 50 ESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY 91 (211)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777777777766666667777776666654
No 131
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=47.89 E-value=66 Score=25.75 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANK-NKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~K-N~~lK~LIdqlrdlI~D 133 (143)
|.+++.||++...-+.+|+.| ++..+-|.++-+++|.-
T Consensus 11 q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g 49 (244)
T PF00956_consen 11 QEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIING 49 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 678888888888888888777 67778888888888875
No 132
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.87 E-value=1.4e+02 Score=23.78 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+...|+||++.++...+.+...--...+..|++|..
T Consensus 150 ~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~ 185 (239)
T cd07647 150 AQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLED 185 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999988877765544444455555543
No 133
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=47.79 E-value=72 Score=21.69 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 102 LEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 102 LEe~As~LRkEi~~KN~~lK~LId 125 (143)
+=+++..+-+.+..|-..+..+++
T Consensus 52 ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 52 LLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333333
No 134
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.40 E-value=47 Score=22.01 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELAN 115 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~ 115 (143)
.+|++|+++-..|+.|+..
T Consensus 38 ~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 38 LEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 135
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.31 E-value=51 Score=26.37 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
||-++|.+.+.+|.||+..+..++.|
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 136
>PRK14140 heat shock protein GrpE; Provisional
Probab=47.30 E-value=44 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=21.6
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-hhHHHH
Q 032332 83 MVSSPVDSVSRSDEVEIDKLEERASLLRKELAN-KNKYLK 121 (143)
Q Consensus 83 ~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~-KN~~lK 121 (143)
|++-+|+ +.+...+|+.|+++...|++|+.. |++++.
T Consensus 25 ~~~~~~~--~~~~~~~~~~l~~~i~~l~~ei~elkd~~lR 62 (191)
T PRK14140 25 VEEETVE--EESEAELLDEEQAKIAELEAKLDELEERYLR 62 (191)
T ss_pred hhhhhhc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 233445677777777777777754 444443
No 137
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=47.28 E-value=50 Score=26.44 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCc------------cc---cccccc-cCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNS------------HK---AKSFEM-VSSPVDSVSRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~------------~k---a~~~e~-~~s~v~~v~~~DqaEIekLEe~As~LRk 111 (143)
|=+|+|-|.++-|+|..|...--+ +- |+..-+ .. .+.|.++.+..++..|.|||
T Consensus 67 ~F~Rfkd~e~~~a~~~~L~~~gfh~fEiAqlGsL~c~saeEAktLiPSL~------nkidD~~lq~ilkels~l~~ 136 (138)
T COG5250 67 DFCRFKDKEVAEALRTTLSGLGFHEFEIAQLGSLFCQSAEEAKTLIPSLG------NKIDDAILQAILKELSLLRK 136 (138)
T ss_pred HHHHhhhHHHHHHHHHHHccCCcchhhHHHhhccccccHHHHHhhccccc------ccccHHHHHHHHHHHHHHHh
Confidence 448999999999999998765222 11 122211 22 27899999999999999997
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.27 E-value=53 Score=28.41 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=38.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
--.|-|-.-+||.||-.. |-+-|--.+--++ ||+ =.++++-|||....|++|+..|+..+.++
T Consensus 83 k~~l~evEekyrkAMv~n----aQLDNek~~l~yq-----vd~----Lkd~lee~eE~~~~~~re~~eK~~elEr~ 145 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSN----AQLDNEKSALMYQ-----VDL----LKDKLEELEETLAQLQREYREKIRELERQ 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHH----hhhchHHHHHHHH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899988432 1122221111111 111 15789999999999999999998865443
No 139
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=47.20 E-value=36 Score=25.09 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELAN 115 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~ 115 (143)
+|++|+++...++.|+.+
T Consensus 26 ~~~~l~~~~~r~~ae~en 43 (165)
T PF01025_consen 26 EIEELKERLLRLQAEFEN 43 (165)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 140
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.87 E-value=87 Score=21.03 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
..+.+||.+-..+.+.|.+-|+.++.+-+.+
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555443
No 141
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=46.66 E-value=1.5e+02 Score=23.53 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
..|+++|+.+-+.-.++|.++..
T Consensus 96 ~~D~aka~a~~~~m~~~~~~~~~ 118 (160)
T COG3678 96 QFDEAKARAQAEKMENQRQALRE 118 (160)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 67787777766666666655544
No 142
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=46.58 E-value=74 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
.+|+.|+++...|++++.++...+..+...+.
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555544444443
No 143
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.38 E-value=94 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.++.+|+--...+|+|+.. ++.=|+.|-+.|.|+
T Consensus 6 En~~~~~~~~i~tvk~en~~----i~~~ve~i~envk~l 40 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEE----ISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45778888888888888654 555555555555554
No 144
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=46.20 E-value=36 Score=27.36 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
++|+.+|+.+...|+ ++...|..|+.|++
T Consensus 82 ~~e~~~l~~~~~~~~-~l~~en~~L~~lL~ 110 (276)
T PRK13922 82 KKELLELESRLQELE-QLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 345555555555443 44444455554443
No 145
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=46.14 E-value=22 Score=31.28 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q 032332 94 SDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~K 116 (143)
+=|.|||+||.|-..+|+|+...
T Consensus 15 ~Lq~eIe~LerR~~ri~~Emrts 37 (283)
T PF11285_consen 15 ALQIEIEQLERRRERIEKEMRTS 37 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34789999999999999998653
No 146
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=45.81 E-value=53 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhh
Q 032332 120 LKRLIDQLRDLITD 133 (143)
Q Consensus 120 lK~LIdqlrdlI~D 133 (143)
.+..|.+++++|.+
T Consensus 22 ~~~~~~~i~~~~~~ 35 (93)
T PF00816_consen 22 REEAIAEIRELMAE 35 (93)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34456666666654
No 147
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=45.79 E-value=19 Score=29.53 Aligned_cols=61 Identities=31% Similarity=0.506 Sum_probs=39.1
Q ss_pred CchhHHH-------HHHHHHHHHHHHHHHHhcCCccccccccc---cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 48 NSALDEA-------RHRYKTSVAALRAVLTAIPNSHKAKSFEM---VSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 48 ggaLDeA-------R~RYK~AvAALRa~iaAI~~~~ka~~~e~---~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
-|.+||+ |.-.+. .-+|+.|..|.+. =|+. ...+-+.-...+++.|++||++...+.+++.
T Consensus 35 yGtlDElNs~IG~A~~~~~~--~~i~~~L~~IQ~~----LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~~l~ 105 (184)
T COG2096 35 YGTLDELNSFIGLARALLKD--EDIRAILRRIQND----LFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNAELP 105 (184)
T ss_pred eccHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH----HHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHhcCC
Confidence 4677775 444443 5777888888776 4432 1111011125899999999999998888765
No 148
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=45.66 E-value=54 Score=31.27 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYL-------KRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~l-------K~LIdqlrdl 130 (143)
+....|++||+++...|.+||..-+..| +.+++.|+++
T Consensus 423 ~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 467 (738)
T TIGR01061 423 RLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEY 467 (738)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4456788899988888888887655544 5555555554
No 149
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=45.57 E-value=39 Score=28.74 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
.+.+||.-|. ++|||++|.-|-.+
T Consensus 234 ~a~~ea~~ke---l~aL~~vikcIee~ 257 (290)
T PF07899_consen 234 EAQNEANEKE---LAALKSVIKCIEEH 257 (290)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 7899999887 57899999999877
No 150
>PRK13411 molecular chaperone DnaK; Provisional
Probab=45.23 E-value=1.6e+02 Score=27.13 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN---KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN---~~lK~LIdqlrdlI~Di 134 (143)
...++|.+++++....+++-|...+ ..++..+++|++.+..|
T Consensus 551 ~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i 595 (653)
T PRK13411 551 LISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAI 595 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999998887643 55666667777665554
No 151
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.20 E-value=92 Score=28.42 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
++.+|++|+++...+.++|...+..+..+..++..+-
T Consensus 419 ~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~ 455 (650)
T TIGR03185 419 SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLK 455 (650)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777666666666655555555444443
No 152
>PHA03041 virion core protein; Provisional
Probab=45.18 E-value=33 Score=27.88 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
.++-+.-..++.||+++--.-..-|=++...||.|||+
T Consensus 88 ~~~~~~s~~ei~kE~esIKdeT~sLQ~es~~LV~DIs~ 125 (153)
T PHA03041 88 KKIRSISIEEIIKELESIKDETSSLQNESDSLVDDIST 125 (153)
T ss_pred hhhhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555556788899999888899999999999999997
No 153
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=44.74 E-value=1.6e+02 Score=23.31 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.|+.|+.+|..+-.-++..-. .. . .+...|++|++.+....+.++..-....+.+|.++..
T Consensus 122 ~l~KaK~~Y~~~c~~~e~~~~----------~~---~------~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~ 182 (236)
T cd07651 122 YLEKAREKYEADCSKINSYTL----------QS---Q------LTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRE 182 (236)
T ss_pred HHHHHHHHHHHHHHhHHHHHH----------HH---c------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888776664211 00 0 1123478899998888888877766666777777655
Q ss_pred H
Q 032332 130 L 130 (143)
Q Consensus 130 l 130 (143)
.
T Consensus 183 ~ 183 (236)
T cd07651 183 L 183 (236)
T ss_pred H
Confidence 4
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.73 E-value=93 Score=22.94 Aligned_cols=17 Identities=35% Similarity=0.683 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA 114 (143)
Q Consensus 98 EIekLEe~As~LRkEi~ 114 (143)
.+++|+++...+.+|+.
T Consensus 74 ~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 74 DVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 155
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.54 E-value=64 Score=26.10 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 57 RYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
-||+.|.+.|+++-.|.+..+... . +.....+..+++--..+.+||..--..+=.|||.
T Consensus 45 ayKn~i~~~R~s~R~l~~~e~~~~-----~------~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~ 103 (236)
T PF00244_consen 45 AYKNVIGSRRASWRILSSIEQKEE-----N------KGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDK 103 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----T------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchHHHHhhhhHhhhhc-----c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999877632221 1 2335556666666666666666555555555554
No 156
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.52 E-value=1.5e+02 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+...+.+.+|.+....|++++......++.|-++|+.+
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567788888888888888888888888888887776
No 157
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=44.49 E-value=42 Score=31.97 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 032332 120 LKRLIDQLRDLI 131 (143)
Q Consensus 120 lK~LIdqlrdlI 131 (143)
++.-|..|+.++
T Consensus 439 l~~~i~~l~~iL 450 (738)
T TIGR01061 439 LEKKIISLEQII 450 (738)
T ss_pred HHHHHHHHHHHh
Confidence 333444444444
No 158
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.44 E-value=58 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+..||.....|.+++....+..+.|-.++..
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 159
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=44.42 E-value=60 Score=25.95 Aligned_cols=54 Identities=26% Similarity=0.464 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccc-------------cCCCCCCCC-CCCHHHHHHHHHHHHHHHH
Q 032332 54 ARHRYKTSVAALRAVLTAIPNSHKAKSFEM-------------VSSPVDSVS-RSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 54 AR~RYK~AvAALRa~iaAI~~~~ka~~~e~-------------~~s~v~~v~-~~DqaEIekLEe~As~LRk 111 (143)
+|++-+.+|.|+|.++.- .+-..||. .-.-|-|.. +.|.+||++.=+..|.||+
T Consensus 65 sRfKn~etv~avr~iLs~----~~lhkFE~A~lgnLcpetaEEAkaLvPSL~nkidD~~le~iL~dls~lr~ 132 (134)
T KOG2351|consen 65 SRFKNRETVRAVRTILSG----KGLHKFEVAQLGNLCPETAEEAKALVPSLENKIDDDELEQILKDLSTLRT 132 (134)
T ss_pred HHhcCHHHHHHHHHHHhh----CCcchhhHHHHhccCcccHHHHHHhccccccccCHHHHHHHHHHHHHHHh
Confidence 577777889999988762 12222221 001111121 5688999988888888774
No 160
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.33 E-value=45 Score=29.33 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
|+|.+.++||...||+|...-|..+|.|.+..-+|
T Consensus 162 e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 45566666777777777777777777776544433
No 161
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.19 E-value=52 Score=28.39 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
++||++|++..-.|++.|...+..|+ +|+|-+
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~---~raRAm 110 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLK---KRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
No 162
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=44.08 E-value=42 Score=28.61 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANK 116 (143)
Q Consensus 99 IekLEe~As~LRkEi~~K 116 (143)
+++|+|+|+.+|++|+.-
T Consensus 206 td~L~keAe~i~~~lekl 223 (244)
T COG1938 206 TDKLEKEAEEIEEQLEKL 223 (244)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999887543
No 163
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=43.79 E-value=54 Score=24.09 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHH
Q 032332 47 GNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEER 105 (143)
Q Consensus 47 GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~ 105 (143)
.|.+.|-|+.|+|.-+...+....++-+. ..|+..++++|++
T Consensus 49 ~gta~~YA~~R~~~Hl~rF~~L~~~l~~~-----------------~id~~~L~~~E~~ 90 (102)
T PF09210_consen 49 TGTAVEYARERFKEHLNRFWRLYDMLESG-----------------RIDEEWLEELEEK 90 (102)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHS--------------------HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CcCHHHHHHHHHH
Confidence 47789999999999999999998888644 5667888888765
No 164
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=43.75 E-value=44 Score=29.18 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~K 116 (143)
.+||.+||++...|+++|-.+
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~~ 54 (316)
T TIGR00513 34 SEEIERLEKRSVELTKKIFSN 54 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777777776654
No 165
>PTZ00117 malate dehydrogenase; Provisional
Probab=43.56 E-value=41 Score=28.03 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.++.|.++|++-+..||+++..
T Consensus 291 ~l~~~E~~~l~~s~~~l~~~~~~ 313 (319)
T PTZ00117 291 ELNAEEKELFDKSIESIQELTQK 313 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988763
No 166
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.32 E-value=50 Score=24.23 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHH----------HHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKE----------LANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkE----------i~~KN~~lK~L 123 (143)
|=|||.|.|+-..|.+| |..+|..||.=
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45788888876666554 66677777753
No 167
>PLN02764 glycosyltransferase family protein
Probab=42.92 E-value=37 Score=30.33 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhhcc
Q 032332 97 VEIDKLEERASLLRKELAN---KNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~---KN~~lK~LIdqlrdlI~DiS~ 136 (143)
.|-+++.+++..+|+.+.. -.++|+.||+.+.+++.+.|-
T Consensus 410 ~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~~~~~ 452 (453)
T PLN02764 410 EIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVSGTSH 452 (453)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC
Confidence 4567788899999988854 468999999999999998774
No 168
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=42.73 E-value=59 Score=22.30 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHH------HHHHHHHHHhhhc
Q 032332 99 IDKLEERASLLRKELANKN--KYLKR------LIDQLRDLITDIS 135 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN--~~lK~------LIdqlrdlI~DiS 135 (143)
++.|+++..+||+|+.+-. ..... .|.++|--|.-|-
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~ 58 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARIL 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHH
Confidence 3567888889999987654 44444 4666666665543
No 169
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=42.66 E-value=55 Score=27.26 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
.-||+-|+-..+.|++||.+|++
T Consensus 111 ~~ei~~L~~kI~~L~~~in~~~k 133 (181)
T PF04645_consen 111 KKEIEILRLKISSLQKEINKNKK 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 46899999999999999998765
No 170
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=42.63 E-value=83 Score=20.20 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032332 55 RHRYKTSVAALRAVLTA 71 (143)
Q Consensus 55 R~RYK~AvAALRa~iaA 71 (143)
..||+.+...+..-..+
T Consensus 4 w~~F~~a~~~~~~~~~~ 20 (77)
T PF03993_consen 4 WKRFRAACDAFFDRRKE 20 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555444433
No 171
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.43 E-value=66 Score=24.75 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
.++|||++...+.+++..+....+..+..++-+.+-..
T Consensus 74 k~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (161)
T PF04420_consen 74 KLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLP 111 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555556666666665544433
No 172
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.36 E-value=96 Score=21.84 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.-++.|+++...|-++|..-++.++.+-.+|.++=..|
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999998876554
No 173
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=42.33 E-value=48 Score=31.90 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCccccccccccCCCCCC----------CCCCC-------HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 59 KTSVAALRAVLTAIPNSHKAKSFEMVSSPVDS----------VSRSD-------EVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 59 K~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~----------v~~~D-------qaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
..|...|-.+|.-|-++..++..-|....... ..+.- +.|.+.|+++...|++=|.+..+..+
T Consensus 376 ~ia~~~iDevI~iIR~s~~~k~~L~~~f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~ 455 (735)
T TIGR01062 376 RIAFLNIDEVIEIIREEDEPKTILMERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQ 455 (735)
T ss_pred HHHHHhHHHHHHHHHcChhhHHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666677788888777666554442221100 00111 22334444444444444555666666
Q ss_pred HHHHHHHHHH
Q 032332 122 RLIDQLRDLI 131 (143)
Q Consensus 122 ~LIdqlrdlI 131 (143)
.++++|.++-
T Consensus 456 ~i~~el~~~~ 465 (735)
T TIGR01062 456 LVKKEIQADA 465 (735)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 174
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.30 E-value=66 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.|+.+|.-.+.|+..|.+--|..|.+||-.+++..
T Consensus 2 ~~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~ 37 (200)
T cd07639 2 AAIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCA 37 (200)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888887777888888887777654
No 175
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=41.92 E-value=1.2e+02 Score=21.88 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..|.+.++++...+++.+.+=.+.++.+++.++.++..
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 62 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSAS 62 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46799999999999999999999999998888777654
No 176
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=41.78 E-value=68 Score=20.53 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKE-LANKNKYLKRLIDQL 127 (143)
Q Consensus 97 aEIekLEe~As~LRkE-i~~KN~~lK~LIdql 127 (143)
.+|..+++....+++. .....+.+..+|+.|
T Consensus 8 ~~i~a~~e~l~~~~~~lt~e~~~~l~~~~~al 39 (64)
T PF12644_consen 8 DEIMATKEELEELEERLTKEDKKRLEEYIDAL 39 (64)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 4788888888888773 333344444444443
No 177
>PRK09039 hypothetical protein; Validated
Probab=41.72 E-value=48 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHH---HHHHHHHHHhc
Q 032332 48 NSALDEARHRYKTS---VAALRAVLTAI 72 (143)
Q Consensus 48 ggaLDeAR~RYK~A---vAALRa~iaAI 72 (143)
...|++.+..|..+ |..|+.-|+|+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aL 149 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAAL 149 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35788888888766 44444444443
No 178
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.61 E-value=1.4e+02 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
--+++|||++++|.+---+.=-+||+
T Consensus 258 ~R~erLEeqlNd~~elHq~Ei~~LKq 283 (395)
T PF10267_consen 258 YRYERLEEQLNDLTELHQNEIYNLKQ 283 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999998876533333333443
No 179
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=41.45 E-value=68 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKE 112 (143)
Q Consensus 96 qaEIekLEe~As~LRkE 112 (143)
-+|+|+++++...|+++
T Consensus 73 LDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 73 LDELERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666655
No 180
>PRK14158 heat shock protein GrpE; Provisional
Probab=41.25 E-value=66 Score=26.22 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
..++++++.||++...|.+|+.
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~ 57 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAA 57 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 5667788888888888887776
No 181
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=41.13 E-value=79 Score=27.45 Aligned_cols=34 Identities=44% Similarity=0.601 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKEL-------ANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 97 aEIekLEe~As~LRkEi-------~~KN~~lK~LIdqlrdl 130 (143)
..|+.+|+|.+.|-+.+ ..+.+.++.|.+.|+||
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34666666666665554 44445555666666654
No 182
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=41.10 E-value=90 Score=25.70 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
=+|.+.|.|=+..+|-+.|..|++-...|..---|||+.+
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888999999999999999999999999999875
No 183
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=41.06 E-value=35 Score=24.16 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+..|+.++++++..++.+..++-=+=.=++.+|+.+.|+
T Consensus 16 k~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~ 54 (70)
T PF10372_consen 16 KQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDI 54 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHH
Confidence 456777788888888888777777766788888888876
No 184
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=40.52 E-value=90 Score=22.87 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
+|.||++++-+|...+-+..+.-|-.+-|.|-|
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~Gk 44 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGK 44 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 689999999999999999998888888887765
No 185
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.37 E-value=2.1e+02 Score=27.80 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSV-----SRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v-----~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
++.|.|-...++.+++-++.+..+ +-+.++-.. +..=..++++|......||+....+-..++.+++|
T Consensus 60 ~~~~~~L~~~ia~~eael~~l~s~-------l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 60 SESKARLLQEIAVIEAELNDLCSA-------LGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999998776 322211111 12224678888899999999999999999999999
Q ss_pred HHHHHhhhcc
Q 032332 127 LRDLITDIST 136 (143)
Q Consensus 127 lrdlI~DiS~ 136 (143)
+..|-.+|..
T Consensus 133 ie~l~~~l~g 142 (660)
T KOG4302|consen 133 IEKLCEELGG 142 (660)
T ss_pred HHHHHHHhcC
Confidence 9988777754
No 186
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.97 E-value=85 Score=20.48 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 032332 97 VEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~ 119 (143)
.+|+.++.+...+|+++..+...
T Consensus 66 ~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 66 QELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444433
No 187
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.88 E-value=83 Score=24.25 Aligned_cols=7 Identities=57% Similarity=0.700 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 032332 107 SLLRKEL 113 (143)
Q Consensus 107 s~LRkEi 113 (143)
+.||.|+
T Consensus 61 ~eLr~el 67 (177)
T PF07798_consen 61 AELRSEL 67 (177)
T ss_pred HHHHHHH
Confidence 3344333
No 188
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=39.79 E-value=2.3e+02 Score=23.86 Aligned_cols=64 Identities=14% Similarity=0.312 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
-++.+|-+|-.+--..+....-.-+. + .++ .+..++++|+..++..-+.+...-...-..-|..
T Consensus 134 ~v~~sKk~Ye~~Cke~~~A~~~~~~a------~-~d~------~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ 197 (258)
T cd07680 134 ELEAAKKAYHLACKEEKLAMTREANS------K-AEQ------SVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDD 197 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------c-ccC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888987766555533222222 1 233 4558899999999988888776544333333333
No 189
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.76 E-value=75 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
+.+|+.|+++...++.+|..|++....||.++
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998888876
No 190
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.67 E-value=1e+02 Score=21.77 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=38.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi 113 (143)
.|-..||-.=|+.|...|.-++...|..++...+. .-|..--+||..|++.+
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr--------------~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE--------------QMINEYKRRIEVLEKQN 70 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH--------------HHHHHHHHHHHHHHHHc
Confidence 46778999999999999999999999886554443 23445556666666654
No 191
>PRK00295 hypothetical protein; Provisional
Probab=39.56 E-value=1.2e+02 Score=20.63 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~l 120 (143)
++-|+.||.+..-+=.-|..-|+.|
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v 28 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888766665555555544
No 192
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=39.52 E-value=42 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA 114 (143)
Q Consensus 98 EIekLEe~As~LRkEi~ 114 (143)
||++|..|.+.|-++|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888888888877764
No 193
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=39.49 E-value=54 Score=32.47 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=47.3
Q ss_pred hHHHHHH------HHHHHHHHHHHHHhcCCccc---ccc-----ccccCCCCC-----CCCCCCHHHHHHHHHHHHHHHH
Q 032332 51 LDEARHR------YKTSVAALRAVLTAIPNSHK---AKS-----FEMVSSPVD-----SVSRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 51 LDeAR~R------YK~AvAALRa~iaAI~~~~k---a~~-----~e~~~s~v~-----~v~~~DqaEIekLEe~As~LRk 111 (143)
|..|+.| +..|+.-+-.+|.-|-++.. |+. |..++-..+ ...+...-|+++|++...+|++
T Consensus 381 l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~ 460 (957)
T PRK13979 381 LEIAEKRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEK 460 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHH
Confidence 4555666 45566666677777777752 211 111111000 1124456688888888888888
Q ss_pred HHHh-------hhHHHHHHHHHHHHHH
Q 032332 112 ELAN-------KNKYLKRLIDQLRDLI 131 (143)
Q Consensus 112 Ei~~-------KN~~lK~LIdqlrdlI 131 (143)
+|+. .++..+.++++|+++-
T Consensus 461 ~I~~l~~iL~~~~~l~~vi~~EL~eik 487 (957)
T PRK13979 461 LIKKLTKILSSEKELLKVIKKELKEVK 487 (957)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8764 5566677788887754
No 194
>PRK11239 hypothetical protein; Provisional
Probab=39.22 E-value=55 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
.+.++.||+|...|+.|++.-...|..|..
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988764444333333
No 195
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=39.21 E-value=69 Score=25.05 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHH-------HHHHHHH
Q 032332 91 VSRSDEVEIDKLEERAS-------LLRKELA 114 (143)
Q Consensus 91 v~~~DqaEIekLEe~As-------~LRkEi~ 114 (143)
|...+++||++|.+-.. .||.|+.
T Consensus 45 ~~eLteeei~~ir~~i~~~~~vegDLr~~v~ 75 (121)
T COG0099 45 VGELTEEEIERLRDAIQNKYLVEGDLRREVR 75 (121)
T ss_pred hccCCHHHHHHHHHHHHhcCeehhHHHHHHH
Confidence 44677888888887776 5666654
No 196
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=39.00 E-value=76 Score=22.63 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKE-LANKNKYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkE-i~~KN~~lK~LIdqlrd 129 (143)
++++|+...+.++.+ ...-++.++.-|+.|.+
T Consensus 15 ~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLhe 47 (83)
T PF07061_consen 15 QIEQLEKEISELEAELIEDPEKIVKRHIKLLHE 47 (83)
T ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Confidence 334444444444444 23345566777776654
No 197
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=38.96 E-value=1e+02 Score=28.29 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASL-------LRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~-------LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..+++||+++.+.+.. .|+.++.+|+ +..||.+.+.++.+
T Consensus 481 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 527 (595)
T PRK01433 481 GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIE-AEALIFNIERAIAE 527 (595)
T ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5789999999888863 3444444454 56666666666543
No 198
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.94 E-value=1.1e+02 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 104 ERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 104 e~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
||...||+.|...-.+-+.-||+|.+-|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666788888775555555556655544
No 199
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=38.88 E-value=79 Score=25.82 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHhhhccc
Q 032332 94 SDEVEIDKLEERASLLRKELANKN-------------KYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN-------------~~lK~LIdqlrdlI~DiS~W 137 (143)
.-..+|..||++|-.+|+|+..+= ..|-..+|-+-|.+.|++.|
T Consensus 46 ~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~ 102 (217)
T COG1392 46 ELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKL 102 (217)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999997652 12344566677777787766
No 200
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=38.83 E-value=1.1e+02 Score=22.55 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..|+.|..-...||+||...-..++.+..+|+.+
T Consensus 79 ~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl 112 (132)
T PF10392_consen 79 SSVESLQSSYERLRSEVIEPYEKIQKLTSQLERL 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3567777778888888888888888877777643
No 201
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=38.81 E-value=69 Score=28.37 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=5.9
Q ss_pred CCchhHHHHHH
Q 032332 47 GNSALDEARHR 57 (143)
Q Consensus 47 GggaLDeAR~R 57 (143)
|-=.||+++++
T Consensus 353 G~L~lD~~kl~ 363 (462)
T PRK08032 353 GKLEIDDDKLT 363 (462)
T ss_pred CeEEEcHHHHH
Confidence 33456776443
No 202
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.81 E-value=55 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 101 KLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LI 124 (143)
+|.++...+..|+...|..||.|+
T Consensus 84 ~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 84 KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444444
No 203
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=38.79 E-value=68 Score=23.98 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN 117 (143)
+.++.|.++|++-+..|+++|..-.
T Consensus 147 ~L~~~E~~~l~~sa~~l~~~i~~~~ 171 (174)
T PF02866_consen 147 PLSEEEQEKLKESAKELKKEIEKGL 171 (174)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999987543
No 204
>PHA02675 ORF104 fusion protein; Provisional
Probab=38.79 E-value=39 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
.+-|+|||.|+.-|||.+-.-++
T Consensus 57 ~~~L~RLE~H~ETLRk~Ml~L~K 79 (90)
T PHA02675 57 GARLDRLERHLETLREALLKLNT 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999998765554
No 205
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=38.57 E-value=57 Score=28.64 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
.+||.+||++...|++||..+-
T Consensus 37 ~~~i~~l~~~~~~~~~~~~~~l 58 (322)
T CHL00198 37 NNKLKSFQRKLRILKKEIFYSL 58 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4667777777777777776543
No 206
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.50 E-value=89 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCCCHHHHHHH----HHHHHHHHHHHHhhhHHHHHHH
Q 032332 92 SRSDEVEIDKL----EERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 92 ~~~DqaEIekL----Ee~As~LRkEi~~KN~~lK~LI 124 (143)
.+..|+.+++| ..+...||++|..|...|..|+
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl 81 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALL 81 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666443 4567889999999988888774
No 207
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=38.34 E-value=76 Score=25.98 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+--||+.|+..+....+|=..+-+..|.++.+..+-|.+
T Consensus 75 ~L~EI~~lq~ElnKiqnEn~k~ekp~Kd~LK~ki~~I~~ 113 (158)
T PF03112_consen 75 SLMEIDSLQTELNKIQNENKKREKPIKDLLKIKIDEIMN 113 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Confidence 456888888888888888888888888888888777765
No 208
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=38.24 E-value=55 Score=28.63 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
.....|+++|+++...|++||+.-+..+..
T Consensus 387 ~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 387 RLTKEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999875555544
No 209
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=38.23 E-value=1.2e+02 Score=24.15 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
...+..|+.+...|-++|......+..+.++|+.-
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~q 226 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQ 226 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777776666666543
No 210
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=38.14 E-value=89 Score=23.46 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
..++|++++++++..+=+||...--.||
T Consensus 47 ~~~~~~~~~~~~~~~~i~~i~~~Gv~vK 74 (120)
T PF09969_consen 47 GLEAELEELEARLRELIDEIEELGVEVK 74 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 3455555555555555555554444444
No 211
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.01 E-value=65 Score=28.46 Aligned_cols=29 Identities=38% Similarity=0.584 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
=+++=++|.+||+.|-||| .|||+||--.
T Consensus 260 Le~rN~~LK~qa~~lerEI----~ylKqli~e~ 288 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREI----RYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3445567777777777777 4777777543
No 212
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=37.90 E-value=1.3e+02 Score=29.95 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=12.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhh
Q 032332 111 KELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 111 kEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.+|...-+.|...|..|.+++.|
T Consensus 449 ~kl~~E~~eL~~~I~~l~~iL~~ 471 (957)
T PRK13979 449 VAFEKEYKELEKLIKKLTKILSS 471 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445555566666666554
No 213
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=37.58 E-value=1.6e+02 Score=24.44 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..+|||.|-|+-..||.||..--.-|.-|-|-=|.|
T Consensus 128 sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 128 SDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 467999999999999999998888777776665555
No 214
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=37.49 E-value=50 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK 121 (143)
-+.+|.++...+||||.+|.-|..
T Consensus 151 ~~~~l~~~i~r~kkeI~KR~sYn~ 174 (195)
T PF01616_consen 151 IERSLQEQIKRLKKEIMKRQSYND 174 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999987654
No 215
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=37.45 E-value=40 Score=25.00 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
|++|.+....||+++.+.....|.+-.-.=+.+.
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~ 34 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFAR 34 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhC
Confidence 8899999999999999888888887666555554
No 216
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.31 E-value=89 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
-+.||.+|+|.+..|++|...-+.-.|.|.-+.+
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~ 86 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEKTLTVDVL 86 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999887777776655443
No 217
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=37.21 E-value=64 Score=30.80 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCccccccccc-----cCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhhHH-------HH
Q 032332 59 KTSVAALRAVLTAIPNSHKAKSFEM-----VSSPVD-----SVSRSDEVEIDKLEERASLLRKELANKNKY-------LK 121 (143)
Q Consensus 59 K~AvAALRa~iaAI~~~~ka~~~e~-----~~s~v~-----~v~~~DqaEIekLEe~As~LRkEi~~KN~~-------lK 121 (143)
..|+.-+-.+|..|-++..|+..-+ ++...+ .+.+...-|++||+++...|++||..-+.. .+
T Consensus 389 ~~~~~~id~vI~iir~s~~ak~~l~~~f~~~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~ 468 (742)
T PRK05561 389 LIAFLNIDEVIRIIRESDEPKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRK 468 (742)
T ss_pred HHHHhhHHHHHHHHhcCccHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455556666766666544433221 111000 011334568889999999999988654443 34
Q ss_pred HHHHHHHHH
Q 032332 122 RLIDQLRDL 130 (143)
Q Consensus 122 ~LIdqlrdl 130 (143)
.+++.|.++
T Consensus 469 ~i~~eL~~i 477 (742)
T PRK05561 469 LIKKELKAD 477 (742)
T ss_pred HHHHHHHHH
Confidence 455666554
No 218
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.08 E-value=2.7e+02 Score=23.95 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
-..+|..||.+...|+.-+..++..++.|-+|+..+-..
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 356788888888889888888999998888887766544
No 219
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=37.08 E-value=1e+02 Score=26.21 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 45 GSGNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 45 g~GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
|.-.+-+++|+.+|..|++.++..+--+... +++ --..++.+.++...+|..+......++.
T Consensus 334 G~~~a~v~~A~a~~~~a~~~~~~~~~~a~~e--------v~~--------a~~~~~~~~~~~~a~~~~v~~a~~~~~~ 395 (457)
T COG1538 334 GRLRARVRQAEAQYDAALAQYEQTVLTARQE--------VAD--------ALAALEAALEQLQALRQAVEAAQEALEL 395 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336789999999999999998877655443 211 1234555556666666555554444443
No 220
>PF15146 FANCAA: Fanconi anemia-associated
Probab=37.00 E-value=39 Score=31.27 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
|...-||+|.|+|-|..||+.|+.|=.
T Consensus 15 IG~VsERvS~LK~avdqrN~aL~~LNq 41 (435)
T PF15146_consen 15 IGDVSERVSSLKKAVDQRNQALTCLNQ 41 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556679999999999999999998744
No 221
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.93 E-value=53 Score=20.93 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKEL 113 (143)
Q Consensus 98 EIekLEe~As~LRkEi 113 (143)
++.+++++...|+||+
T Consensus 49 ~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 49 RIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 222
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=36.57 E-value=57 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
.+||+.|.++.-.+||++..|-
T Consensus 6 k~el~~l~~qm~e~kK~~idk~ 27 (59)
T PF10925_consen 6 KKELKALYKQMLELKKQIIDKY 27 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999998774
No 223
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=36.49 E-value=65 Score=25.63 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHHHH-----HHHHHHHhcCCccccccccc---cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVA-----ALRAVLTAIPNSHKAKSFEM---VSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 48 ggaLDeAR~RYK~AvA-----ALRa~iaAI~~~~ka~~~e~---~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
-|.+||+-.---.+.+ .+|..|..|.+. -|+. ...+ +.-++.++++|++||+..-.+.+.+.
T Consensus 28 ~Gt~DElns~iGl~~~~~~~~~~~~~L~~iQ~~----Lf~l~~~la~~-~~~~~i~~~~v~~LE~~id~~~~~l~ 97 (171)
T TIGR00636 28 YGTLDELNSFIGVALSLLKWEDLKEDLERIQND----LFDIGGDLATP-GDTKKITEEDVKWLEERIDQYRKELP 97 (171)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----HHHHhHHhcCC-CcccCcCHHHHHHHHHHHHHHHhhCC
Confidence 5788887443222222 356666666544 2221 1111 10126889999999998888776654
No 224
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.30 E-value=1.3e+02 Score=22.87 Aligned_cols=42 Identities=29% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
..+++||++...|.+-+.+-.+..+.|...+.++-.=+..|-
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888888888888777777777777777777666555553
No 225
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=36.16 E-value=63 Score=29.16 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~l 120 (143)
.....|++||+++...|.+||..-++.+
T Consensus 401 ~LT~~e~~kL~~E~~~l~~ei~~l~~~l 428 (445)
T cd00187 401 RLTKLEREKLLKELKELEAEIEDLEKIL 428 (445)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788888888888888887665555
No 226
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.11 E-value=94 Score=26.15 Aligned_cols=39 Identities=31% Similarity=0.318 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
=++|.+++.+...-|++|++.|.+.|+.+..+--.|...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777666555543
No 227
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.06 E-value=93 Score=29.24 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
..+.|++.|+++...|+.+|+....+++.|-..+..++..+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~ 365 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEEL 365 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999888888877776554
No 228
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=35.98 E-value=45 Score=30.47 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 92 SRSDEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
...|+.+|.+|++|...|++||..-.+.
T Consensus 37 ~~~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 37 NQNDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999765544
No 229
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=35.96 E-value=1.1e+02 Score=22.99 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-..||++...+|+.+..+-..++.-+++..+-+.
T Consensus 40 ~~~Le~~i~~~R~~~~~~~~~~~~~~~~~~~~~~ 73 (158)
T PF09769_consen 40 PSYLEEQIRKAREFLQPYYSWAQDELNTVKSKYY 73 (158)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988888887777665443
No 230
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.92 E-value=83 Score=30.59 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+|+||++.+.|..+|....+-+-.|.++|..+..
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655556665555543
No 231
>PRK12566 glycine dehydrogenase; Provisional
Probab=35.87 E-value=23 Score=35.31 Aligned_cols=47 Identities=30% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhhhccccCCCC
Q 032332 93 RSDEVEIDKLEERASLLRKELAN--------KNKYLKRLIDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~--------KN~~lK~LIdqlrdlI~DiS~Wqspcs 142 (143)
.-+.+|||+|=+-...+|+||.. +|-.||.-=--+.+++. -|..|+|
T Consensus 857 ~eskeEIDrf~eAL~~I~~e~~~v~~g~~~~~~n~l~~apht~~~~~~---~w~~~y~ 911 (954)
T PRK12566 857 SESKAELDRFVEAMLSIRAEIGKVQEGNWPAEDNPLKRAPHTLADVTG---VWQRPYS 911 (954)
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCchHHhhc---cCCCCcC
Confidence 46899999999999999999864 33344443233344444 3999986
No 232
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=35.68 E-value=1.1e+02 Score=19.01 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 100 DKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
+.||..+...++.-. ..+..+++.|+++|..+.-|
T Consensus 56 ~~lE~~~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~ 90 (90)
T PF01627_consen 56 EQLEQALKSGDKPEA---EELEQLLDELEAMLEQLRQW 90 (90)
T ss_dssp HHHHHHHHTTHHHHS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccch---hHHHHHHHHHHHHHHHHhCc
Confidence 344444444443333 45688889999888887665
No 233
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=35.63 E-value=1.5e+02 Score=20.65 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.++++++-++...|+.+|......++.+.+.-..|+.-
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (213)
T cd00176 137 DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEE 175 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHc
Confidence 678999999999999999999988888888877777653
No 234
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=35.57 E-value=1.8e+02 Score=23.78 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCccc---------cccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 59 KTSVAALRAVLTAIPNSHK---------AKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 59 K~AvAALRa~iaAI~~~~k---------a~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
-.|+..||.++..+--..- .+.|+..+. -.|++-+++|++....|.+-+..-+.||--+.+.
T Consensus 143 ~ra~~~LR~vl~~l~a~v~p~~v~i~~a~~~fd~~G~------l~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 213 (219)
T TIGR02690 143 FNAVNILRRLGRWMRMPTIPNQSSVAKAFDEFDEAGR------MKPSDYYDRVVDVMEELTKFTLLTRAYLDYLVDR 213 (219)
T ss_pred HHHHHHHHHHHHHCCCccccchhhhhhhHhhcCcCCC------CCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh
Confidence 3578889998876432211 122332222 5688889999999999998888888888776654
No 235
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=35.54 E-value=54 Score=34.21 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHH-------------------HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 92 SRSDEVEIDKLEERAS-------------------LLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 92 ~~~DqaEIekLEe~As-------------------~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.++|=.+|||||+|.. .|-+|+-.++..||..|..+-|-+.+|
T Consensus 1155 dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laei 1216 (1439)
T PF12252_consen 1155 DKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEI 1216 (1439)
T ss_pred CcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHH
Confidence 3689999999999864 455555566667777666665555554
No 236
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=35.49 E-value=76 Score=23.00 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 109 LRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 109 LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
-++.|..||..-+.-|+-||.=|.|=
T Consensus 40 ~~~~i~eKN~RR~esi~~~R~EIkDE 65 (73)
T PRK03830 40 EKQAIEEKNERREESIDGMRSEIKDE 65 (73)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 35559999999999999999999884
No 237
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=35.48 E-value=1.1e+02 Score=23.81 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
......++.|+++...+|+||+.-. ..|.-||..-+--+..-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~~~el~~le-~~k~~id~~A~~~~~~~~w 96 (180)
T PF04678_consen 53 EYQNSRERQLRKRLEELRQELAPLE-KIKQEIDEKAEKRARRLLW 96 (180)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999996654 4455555554444444444
No 238
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=35.48 E-value=1e+02 Score=25.29 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCCC-chhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 032332 43 SGGSGN-SALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 43 ggg~Gg-gaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRk 111 (143)
|+..++ ...+..+.|-|..+..+|.-+.++.. +...+|-+|||++..+||+
T Consensus 144 g~~~~~~~~~~~~~~~r~SvLD~v~~d~~~L~~------------------~Lg~~Dr~kLd~yl~sire 195 (302)
T PF07586_consen 144 GSGSPGRAQRARRLARRKSVLDLVREDAKSLRR------------------RLGAEDRQKLDQYLDSIRE 195 (302)
T ss_pred CCCCCcHHHHHHHHHhcccHHHHHHHHHHHHHh------------------hcCHHHHHHHHHHHHHHHH
Confidence 433333 33444455555566666666666511 5566778999999988884
No 239
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.47 E-value=70 Score=27.48 Aligned_cols=42 Identities=31% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 88 VDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 88 v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+.+|.|+=-+|-|+||+....|=.....|-..|--|=-||++
T Consensus 216 Lq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 216 LQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456778888888888888888877777776666555555554
No 240
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=35.22 E-value=1.1e+02 Score=25.83 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 032332 92 SRSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~LRkEi~~ 115 (143)
-=....||+.|-+|.-+||+|+..
T Consensus 267 ~lPTr~evd~l~k~l~eLrre~r~ 290 (293)
T PF09712_consen 267 NLPTRSEVDELYKRLHELRREVRA 290 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999854
No 241
>PHA02754 hypothetical protein; Provisional
Probab=35.19 E-value=66 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 105 RASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 105 ~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.|++|||-|- ||..|..+.||||.++.-
T Consensus 3 kAeEi~k~i~--eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 3 KAEEIPKAIM--EKDFKEAMRELKDILSEA 30 (67)
T ss_pred cHHHHHHHHH--HhHHHHHHHHHHHHHhhC
Confidence 3677888775 567899999999988753
No 242
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.10 E-value=1.1e+02 Score=28.37 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=41.7
Q ss_pred CchhHHHHHHHHHHHHHH---------HHHHHhcCCccccccccccCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 48 NSALDEARHRYKTSVAAL---------RAVLTAIPNSHKAKSFEMVSSPVDSVS--RSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAAL---------Ra~iaAI~~~~ka~~~e~~~s~v~~v~--~~DqaEIekLEe~As~LRkEi~~K 116 (143)
...+++.+.+|+.....| +.-|.+|-.- .+.++. .....|+++|.......+..|.+-
T Consensus 170 ~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----------~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 170 EKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----------DIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888666655 4444444331 111111 123447776666666655555555
Q ss_pred hHHHHHHHHHHHHHHhh
Q 032332 117 NKYLKRLIDQLRDLITD 133 (143)
Q Consensus 117 N~~lK~LIdqlrdlI~D 133 (143)
...|+...+||+..+.+
T Consensus 239 ~~~l~~~~~~~~~~~~~ 255 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAE 255 (555)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 55555555555555544
No 243
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=35.04 E-value=2.5e+02 Score=23.00 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.|+.+|-+|-.+---+..... .++-.+. .+.+.|+||++.++...+.++..-....+..|+.|.+
T Consensus 121 ~l~ksKk~Ye~~Cke~~~a~q---------~~~k~~~------~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~ 185 (242)
T cd07671 121 KTMESKKTYEQRCREADEAEQ---------TFERSSS------TGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDK 185 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHhc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888766655544311 1111112 3457899999999999998887655555777777655
Q ss_pred H
Q 032332 130 L 130 (143)
Q Consensus 130 l 130 (143)
.
T Consensus 186 ~ 186 (242)
T cd07671 186 A 186 (242)
T ss_pred H
Confidence 4
No 244
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.02 E-value=95 Score=21.96 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 100 DKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.|-++...+=..|+-....|-..|.++-+.++.|
T Consensus 49 ~~l~d~l~~av~~FE~~HP~l~~~lr~i~~sLa~M 83 (85)
T PF14357_consen 49 ESLVDRLNEAVERFEASHPKLAGILRNIMDSLANM 83 (85)
T ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHC
Confidence 34445555555667777777777777666665543
No 245
>cd08794 Death_IRAK1 Death domain of Interleukin 1 Receptor Associated Kinase-1. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 1 (IRAK1). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK1 is an active kinase and also plays adaptor functions. It binds to the MyD88-IRAK4 complex via its DD, which facilitates its phosphorylation by IRAK4, activating it for further auto-phosphorylation. Hyper-phosphorylated IRAK1 forms a cytosolic complex with TRAF6, leading to the activation of NF-kB and MAPK pathways. IRAK1 is involved in autoimmunity and may be associated with lupus pathogenesis. DDs are protein-protein interaction domains found in a variety of domain architectures.
Probab=35.01 E-value=53 Score=24.44 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASL---LRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 94 ~DqaEIekLEe~As~---LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.||-|+.++|++.|- |==--++||+.|..|++-|..|
T Consensus 35 ~dqtelR~~E~~~s~T~elmw~W~~Rn~tV~~Ll~iL~~L 74 (84)
T cd08794 35 KDQTELRLLEQSGRRTDWVMWRWENRNGRVGELLDILERL 74 (84)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 378888888876543 3334589999999999998765
No 246
>COG1745 Predicted metal-binding protein [General function prediction only]
Probab=34.98 E-value=95 Score=23.45 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 032332 58 YKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 58 YK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~ 115 (143)
-|.||-.|=..|+.+.+. +. +..+..-.+|++-+..+||||.+
T Consensus 51 HK~AIFlL~~~Ia~~ms~---------~~------~~~~~~~~~l~~~l~~~~~el~~ 93 (94)
T COG1745 51 HKAAIFLLSGGIASAMSD---------ED------PEAEELSKRLEELLESVKKELKR 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHh---------cC------cccHHHHHHHHHHHHHHHHHHcc
Confidence 467888899988887653 33 66778889999999999999865
No 247
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.54 E-value=97 Score=28.89 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
|+..+.||++...||+|+.
T Consensus 75 Q~kasELEKqLaaLrqElq 93 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677888888887776
No 248
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=34.35 E-value=3.4e+02 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~Di 134 (143)
...++|.++|++....+++=|...+ ..++..+++|++++.++
T Consensus 547 ~~~~~e~~~l~~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~ 589 (595)
T TIGR02350 547 KLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKL 589 (595)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5677888999988888887666532 45666666777666554
No 249
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=34.25 E-value=69 Score=26.88 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASL 108 (143)
Q Consensus 95 DqaEIekLEe~As~ 108 (143)
=++||+||+++...
T Consensus 29 Y~~ei~~L~~~i~~ 42 (298)
T PF11262_consen 29 YDEEIERLEKEISQ 42 (298)
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999988877
No 250
>PRK00106 hypothetical protein; Provisional
Probab=34.01 E-value=1.1e+02 Score=28.42 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
..+.+++..+...+..++.+...-
T Consensus 135 e~reeeLee~~~~~~~~~~~~~~~ 158 (535)
T PRK00106 135 TDKSKHIDEREEQVEKLEEQKKAE 158 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455554444433
No 251
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=33.92 E-value=1e+02 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 032332 107 SLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdq 126 (143)
..++|-++++.+.||.++..
T Consensus 67 ~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 67 QERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777766543
No 252
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.91 E-value=88 Score=23.57 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
..||..|+++...|++++..-..-|+.|
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888777666555544
No 253
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.81 E-value=97 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 100 DKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.|.++++.+|.+...+|.-|+.+.++.+.++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~ 62 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELRE 62 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888889989888888877764
No 254
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=33.67 E-value=1.1e+02 Score=26.47 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
..|+..|++-...|++.|..-...++.|....-.|=.||.+
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999988888888888888888777753
No 255
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=33.50 E-value=1.2e+02 Score=27.52 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.+.++.||+++.+++..+ |+..+.||. +..+|..+|++|.+
T Consensus 498 ~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~-le~~i~~~~~~l~~ 545 (627)
T PRK00290 498 SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ-ADSLIYQTEKTLKE 545 (627)
T ss_pred cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467889999987777643 333444453 77788888877753
No 256
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=33.49 E-value=3.6e+02 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN-KNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~-KN~~lK~LIdqlrdlI~D 133 (143)
...++|.+++++....+.+=|.. ....++..++.|++++..
T Consensus 549 ~~~~~e~~~i~~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~ 590 (627)
T PRK00290 549 KVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQK 590 (627)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45677888888888887776543 223444555555554433
No 257
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.99 E-value=1.5e+02 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=14.5
Q ss_pred hHHHHHHHH---HHHHHHHHHHHhcCCccc
Q 032332 51 LDEARHRYK---TSVAALRAVLTAIPNSHK 77 (143)
Q Consensus 51 LDeAR~RYK---~AvAALRa~iaAI~~~~k 77 (143)
+++.+.||. .-++-||+...-+.+|.+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~ 208 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence 344444443 345556666666666643
No 258
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=32.97 E-value=96 Score=30.94 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
=|++|+++....|+++|+.-+..|.-|++-
T Consensus 425 le~~k~~~e~~~l~~~i~~~~~~L~~l~~~ 454 (869)
T PRK12758 425 FDSDKADELIARLEAEIAEVKHHLAHLTDY 454 (869)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666655554333
No 259
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=32.94 E-value=45 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~K 116 (143)
.+||.+||++...|+++|..+
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~~ 54 (319)
T PRK05724 34 SEEIERLEKKLEELTKKIYSN 54 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999988888654
No 260
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.94 E-value=1.5e+02 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~K 116 (143)
=.|+.+.+++++++.++.||+..-
T Consensus 68 liD~ekm~~~qk~m~efq~e~~eA 91 (201)
T COG1422 68 LIDQEKMKELQKMMKEFQKEFREA 91 (201)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999988643
No 261
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=32.84 E-value=83 Score=26.26 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELAN---KNKYLKRLIDQLR 128 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~---KN~~lK~LIdqlr 128 (143)
|.++|-++...|..||.. .|..|+.|.+++.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~ 159 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQ 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 2444555555443
No 262
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.68 E-value=1.8e+02 Score=22.05 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 55 RHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
=.|.-.=+++|+.-++.+.......+.|.+.. -...++...+.++...||+++...+.-..
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l------~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKL------MEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777777766655555554333 11223344444555555555555444433
No 263
>smart00721 BAR BAR domain.
Probab=32.65 E-value=1.6e+02 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLI---DQLRDLI 131 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LI---dqlrdlI 131 (143)
..|.+.||++...+++.+.+--+.++.++ +.+|.+.
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~ 64 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKL 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 56799999999999999999999999999 7777653
No 264
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=32.54 E-value=2.2e+02 Score=22.11 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
...+.|++.++.+...++.++...+..++.+-.++
T Consensus 98 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 132 (322)
T TIGR01730 98 AVSQADLDDAKAAVEAAQADLEAAKASLASAQLNL 132 (322)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888888888888888776555555444333
No 265
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=32.53 E-value=1e+02 Score=19.97 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 100 DKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..++++...|-.||-.....++..|.+|...+
T Consensus 41 ~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 41 SELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666667777777777777777777776654
No 266
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=32.49 E-value=1.2e+02 Score=21.35 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 106 ASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 106 As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
...|++||.+.|..--+.--+|.||..|.
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdL 32 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDL 32 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44677777777777777888899999884
No 267
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.46 E-value=1.3e+02 Score=27.60 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.++-|+++..++|.|+..-+..|..|+.+-|+|=.
T Consensus 454 ~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 454 KREDLEEKRQEAQEEQQELEPKLDALVERTRELQK 488 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35556777889999999999999999998888743
No 268
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.40 E-value=2e+02 Score=25.80 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|..+++.+|+|...+++-..+.+.-+..+++.+.++-.
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~ 336 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKE 336 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999988655555555555554444433
No 269
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=32.39 E-value=1.4e+02 Score=21.47 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+|.+++...+ +..||.|=.|.++
T Consensus 8 ~eieK~k~Kiae~-------Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 8 AEIEKTKEKIAEL-------QARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4555555554444 4455555444443
No 270
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.32 E-value=49 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 032332 51 LDEARHRYKTSVAALRAVLTAIP 73 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~ 73 (143)
-|..+.|||.|++-|+.+-+--.
T Consensus 84 ~e~~~~rY~~A~~~L~~ia~G~~ 106 (130)
T PF07030_consen 84 TEPVRERYKDAIKWLEDIAKGKI 106 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCc
Confidence 78999999999999998866543
No 271
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.21 E-value=1.3e+02 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 103 EERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 103 Ee~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+|..+.|+++++...+.++.+-++++++
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~ 241 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKEL 241 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 272
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=32.17 E-value=3.3e+02 Score=25.33 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~D 133 (143)
..+.+|.+++++....+++=|...+ ..++..+++|++++..
T Consensus 590 ~~s~~ere~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~ 631 (663)
T PTZ00400 590 KISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWK 631 (663)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877555322 2334444444444433
No 273
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.06 E-value=1.4e+02 Score=24.64 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+|..||+++..++.++..-...+..|-.+++.|=..|
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888887777777777777777665554
No 274
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.04 E-value=1.6e+02 Score=25.56 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELAN---KNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~---KN~~lK~LIdqlrdl 130 (143)
+.+|++|+++...|.+.++. +++.++.|-+|+..+
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~ 285 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASL 285 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 44555666666555554432 333445555554443
No 275
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.00 E-value=2.1e+02 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
=....||+.+-+|..+||+|+.+--+.|.
T Consensus 285 lPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 285 LPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999988755444433
No 276
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.90 E-value=1.7e+02 Score=23.43 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 032332 120 LKRLIDQLR 128 (143)
Q Consensus 120 lK~LIdqlr 128 (143)
++.+++.++
T Consensus 75 l~~~v~~q~ 83 (251)
T PF11932_consen 75 LERQVASQE 83 (251)
T ss_pred HHHHHHHHH
Confidence 333333333
No 277
>PRK13907 rnhA ribonuclease H; Provisional
Probab=31.89 E-value=1.8e+02 Score=20.29 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHhhhcccc
Q 032332 116 KNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 116 KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
|+..++.|+.+++.|+..+..|.
T Consensus 83 ~~~~~~~l~~~~~~l~~~f~~~~ 105 (128)
T PRK13907 83 KNKMFAPLLEEALQYIKSFDLFF 105 (128)
T ss_pred cChhHHHHHHHHHHHHhcCCceE
Confidence 66778999999999988876653
No 278
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=31.85 E-value=53 Score=26.14 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+--=+++|+|.+++.+||.||.--=..+.
T Consensus 85 ~~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 85 RKKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446788999999999999976544443
No 279
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=31.77 E-value=82 Score=29.10 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRK 111 (143)
Q Consensus 98 EIekLEe~As~LRk 111 (143)
.|..||++..+||+
T Consensus 81 pi~ele~ki~el~~ 94 (431)
T PLN03230 81 PIVDLENRIDEVRE 94 (431)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555554
No 280
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.77 E-value=1.8e+02 Score=20.26 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 032332 105 RASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 105 ~As~LRkEi~~KN~~lK~LIdql 127 (143)
....||.|-..-...++.|+..|
T Consensus 47 en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 47 ENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444
No 281
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=31.74 E-value=73 Score=26.12 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
..++||+..-++-+..|=.+--.|++||++
T Consensus 110 ~~IikEl~dik~~t~~LQ~es~~Lv~DIs~ 139 (166)
T PF06193_consen 110 DNIIKELNDIKDETSSLQAESNSLVTDISD 139 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888875
No 282
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=31.71 E-value=1.1e+02 Score=18.87 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=15.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 108 LLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.+++++..-...++..++.+|.+|.++
T Consensus 37 ~~~~~l~~i~~~~~~~~~~~R~~~~~L 63 (68)
T PF07730_consen 37 EAREELEEIRELLREALQELRRIIHEL 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666554
No 283
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.67 E-value=2.2e+02 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032332 98 EIDKLEERASLLRKELANK 116 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~K 116 (143)
++.++++++..+|.++..-
T Consensus 152 ~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 152 ELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 284
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=31.60 E-value=1.1e+02 Score=22.90 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 102 LEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 102 LEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.+....+++++..|-..|+.+..+|..++.
T Consensus 81 ~~~~~~~~~~~i~~ki~~L~~l~~~L~~l~~ 111 (120)
T TIGR02054 81 TAACLAVLRQLVEARREALAALEVQLAAMPT 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888899999999999999988873
No 285
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.46 E-value=1.2e+02 Score=22.03 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHHH
Q 032332 115 NKNKYLKRLIDQLR 128 (143)
Q Consensus 115 ~KN~~lK~LIdqlr 128 (143)
.+|..|+.-|+.|+
T Consensus 48 ~~n~~L~~eI~~L~ 61 (105)
T PRK00888 48 ARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444443
No 286
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.44 E-value=1.4e+02 Score=27.33 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 106 ASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 106 As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
....+++|..+.+.+..++.++.+++
T Consensus 106 Le~ke~~L~~re~eLee~~~e~~~~~ 131 (514)
T TIGR03319 106 LEKKEKELSNKEKNLDEKEEELEELI 131 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555554444
No 287
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=31.08 E-value=98 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 113 LANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 113 i~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
+..---.+..+...|..+-.||..|+++
T Consensus 245 ~~e~~~~l~~l~~~l~kia~Dl~~~~s~ 272 (312)
T PF00206_consen 245 LAELASALALLAGTLSKIAEDLRLLSST 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333346778888999999999999985
No 288
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.03 E-value=3.4e+02 Score=23.25 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKE 112 (143)
Q Consensus 99 IekLEe~As~LRkE 112 (143)
.++||-|...|||.
T Consensus 51 LD~lelrVE~LRk~ 64 (219)
T KOG3633|consen 51 LDSLELRVEKLRKD 64 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777774
No 289
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=30.99 E-value=1.6e+02 Score=20.72 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
-++|++||++-....++||......
T Consensus 33 ~~~E~~rl~~Al~~~~~eL~~l~~~ 57 (123)
T PF05524_consen 33 IEAEIERLEQALEKAREELEQLAER 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999888888887654444
No 290
>CHL00094 dnaK heat shock protein 70
Probab=30.86 E-value=3.8e+02 Score=24.44 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~D 133 (143)
...++|.++|++....+++-|...+ ..++..+++|++++..
T Consensus 551 ~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~ 592 (621)
T CHL00094 551 KISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALME 592 (621)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3457788888888887776554422 3445555555554443
No 291
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.72 E-value=1.3e+02 Score=26.95 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKE-----------------LANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~LRkE-----------------i~~KN~~lK~LIdqlrdlI~D 133 (143)
+.||+.|.-|....|+. -.+.-++||+.|+-+|.-+.|
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45777776666655532 222236778888877766543
No 292
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=30.65 E-value=1.1e+02 Score=22.07 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 108 LLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.-++.|..||..-+.-|+-||.=|.|=
T Consensus 40 ~~~~~i~eKN~RR~eSi~~~r~EIkDE 66 (70)
T TIGR03090 40 EEKQRIEEKNERREQSIDGFRSEIKDE 66 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 345669999999999999999999884
No 293
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.51 E-value=2.2e+02 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 032332 99 IDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~l 120 (143)
..+||++....++||..-...|
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V 48 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEV 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544443333
No 294
>PF08910 Aida_N: Aida N-terminus; InterPro: IPR015006 This entry represents the axin interactor, dorsalization-associated protein family AIDA [].; PDB: 1UG7_A.
Probab=30.37 E-value=1.1e+02 Score=23.29 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHH----HHHHHHHHHH----HHHhhhH
Q 032332 47 GNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDK----LEERASLLRK----ELANKNK 118 (143)
Q Consensus 47 GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIek----LEe~As~LRk----Ei~~KN~ 118 (143)
+||-|+||---|+.-.--|+..+.. .++ ... ......-|-| ||=|+..|+. ...-+-.
T Consensus 17 sWGQlvEA~deY~~La~~l~k~~~~-~~~--------~~f-----te~qkk~i~Kia~cL~lRs~~Lq~~t~~~~~i~le 82 (106)
T PF08910_consen 17 SWGQLVEAIDEYQRLARQLKKEVQS-HQD--------SDF-----TEDQKKTIGKIATCLELRSKALQSLTGSQEGITLE 82 (106)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHT--SS----------SS------HHHHHHHHHHHHHHHHHHHHHH---S---S--SH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-ccC--------CCC-----CHHHHHHHHHHHHHHHHHHHHHHhhhccccccCHH
Confidence 4899999999999998888887766 333 111 0111222333 5667766664 2222445
Q ss_pred HHHHHHHHHHHHHh
Q 032332 119 YLKRLIDQLRDLIT 132 (143)
Q Consensus 119 ~lK~LIdqlrdlI~ 132 (143)
.+|.|+.-|+.|++
T Consensus 83 dlk~l~~~lk~ll~ 96 (106)
T PF08910_consen 83 DLKKLEPILKNLLD 96 (106)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 67778888877663
No 295
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=30.31 E-value=80 Score=30.37 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 103 EERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 103 Ee~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
..|..+-=++|.+--|.-.+|+|||.--|+|.-|+
T Consensus 208 r~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErF 242 (621)
T KOG3759|consen 208 RRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERF 242 (621)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555677777777889999999999998765
No 296
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.21 E-value=49 Score=31.25 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~K 116 (143)
++|+..|++|..+||++|+.|
T Consensus 31 ~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 31 QAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 566666677777777777655
No 297
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=30.17 E-value=1.1e+02 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK 121 (143)
-++.-++++.+.+|+||..+-..-|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (204)
T cd01878 6 TDRRLIRERIAKLRRELEKVKKQRE 30 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567788999999999987765533
No 298
>COG1843 FlgD Flagellar hook capping protein [Cell motility and secretion]
Probab=30.06 E-value=35 Score=28.25 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHH
Q 032332 115 NKNKYLKRLIDQLR 128 (143)
Q Consensus 115 ~KN~~lK~LIdqlr 128 (143)
.|+..||+||.||+
T Consensus 30 ~kd~FLkLLiaQLk 43 (222)
T COG1843 30 GKDDFLKLLIAQLK 43 (222)
T ss_pred cHHHHHHHHHHHHh
Confidence 58899999999997
No 299
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.98 E-value=1.3e+02 Score=24.25 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=9.9
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALR 66 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALR 66 (143)
.-+|.+-|..|-..+...|
T Consensus 168 ~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 168 SAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhhh
Confidence 4456666666654444433
No 300
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.96 E-value=1.6e+02 Score=23.90 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHH
Q 032332 73 PNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN-KNKYLKRLID 125 (143)
Q Consensus 73 ~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~-KN~~lK~LId 125 (143)
|+-|.+..........-..-.+-..|++.|+++...|++|+.. |++++.++-|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~elkd~~lR~~Ae 61 (185)
T PRK14139 8 PSEQEAEEAGAAAQAAAAAAAAAEDAAPALEAELAEAEAKAAELQDSFLRAKAE 61 (185)
T ss_pred CCCccccCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 301
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=29.93 E-value=46 Score=29.89 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhc
Q 032332 104 ERASLLRKELANKN--KYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 104 e~As~LRkEi~~KN--~~lK~LIdqlrdlI~DiS 135 (143)
|||..+-|+|.+-+ ..-..++||.|.||+.|-
T Consensus 283 erAekf~k~irkLG~~~dG~sylD~FR~LItqIG 316 (350)
T PF14744_consen 283 ERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQIG 316 (350)
T ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHh
Confidence 56666666665533 334568999999999883
No 302
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=29.93 E-value=58 Score=28.64 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHH-HHHHhhhccccC
Q 032332 96 EVEIDKLEERASLLRK-------ELANKNKYLKRLIDQL-RDLITDISTWQS 139 (143)
Q Consensus 96 qaEIekLEe~As~LRk-------Ei~~KN~~lK~LIdql-rdlI~DiS~Wqs 139 (143)
+..|..||++..+||+ ++...-..|+..+++| +++.++.+-||.
T Consensus 12 e~~i~el~~~i~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~ 63 (322)
T CHL00198 12 MKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQR 63 (322)
T ss_pred hhhHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4568889999988887 2334444455545554 556677788874
No 303
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=29.81 E-value=57 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
|--..-+-++||+...++++|......|+.+++.+
T Consensus 58 PyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~~ 92 (217)
T PF08900_consen 58 PYADWWLLRIEEKINEARQELQELIARLDALLAEL 92 (217)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344567899999999999999888888888773
No 304
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.78 E-value=1.5e+02 Score=18.84 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELAN 115 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~ 115 (143)
++.++..+...|+++++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~ 35 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEE 35 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555556666555543
No 305
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.76 E-value=1.2e+02 Score=31.09 Aligned_cols=39 Identities=41% Similarity=0.539 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhhhc
Q 032332 97 VEIDKLEERASLLRKELAN----------KNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~----------KN~~lK~LIdqlrdlI~DiS 135 (143)
-|||+||++.+.||+|+.. .-.+++.-|.|||.-|.+++
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877642 11235566777777777664
No 306
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=29.75 E-value=1.7e+02 Score=19.45 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Q 032332 48 NSALDEARHRYKTSVAALRAVLTA 71 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaA 71 (143)
.|-.++|-.-|+.|+.-|--.+-.
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~k~ 42 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMHALKY 42 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhh
Confidence 466788888898888877555433
No 307
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=29.73 E-value=1.3e+02 Score=19.80 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRK 111 (143)
Q Consensus 98 EIekLEe~As~LRk 111 (143)
||.+||+....|+.
T Consensus 59 ~I~~m~~~~~~l~~ 72 (87)
T PF08700_consen 59 EISSMENDLSELRN 72 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443333333
No 308
>PRK11677 hypothetical protein; Provisional
Probab=29.69 E-value=2.1e+02 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.|+|+.+++...-|.|+..--...-.|+++|.+
T Consensus 36 ~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~ 68 (134)
T PRK11677 36 YELEKNKAELEEYRQELVSHFARSAELLDTMAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444455555543
No 309
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.62 E-value=1.3e+02 Score=24.25 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
-+=+|.++|.++.+.+..++..++..++.|=-|++
T Consensus 115 knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 115 KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999988888877764
No 310
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=29.55 E-value=40 Score=21.98 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERAS 107 (143)
Q Consensus 93 ~~DqaEIekLEe~As 107 (143)
|++++||..+|++..
T Consensus 1 p~t~~~I~~~E~~lg 15 (130)
T PF09346_consen 1 PATEEEIQELEEKLG 15 (130)
T ss_dssp ---HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC
Confidence 578999999999853
No 311
>PF14381 EDR1: Ethylene-responsive protein kinase Le-CTR1
Probab=29.51 E-value=78 Score=25.85 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..-..+..+|+++|..+.+.+. ..++.++.+|-+|+.|
T Consensus 68 r~~D~~L~~L~~~a~~~~~~~~---~~~~~~v~~LA~lVa~ 105 (204)
T PF14381_consen 68 RRRDPSLKELEQRAHELSKGLS---TNTKELVQKLAKLVAD 105 (204)
T ss_pred cccCHHHHHHHHHHHHHHhccc---cCHHHHHHHHHHHHHH
Confidence 4555788999999999886654 2478899999999886
No 312
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=29.40 E-value=2e+02 Score=22.63 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q 032332 116 KNKYLKRLID 125 (143)
Q Consensus 116 KN~~lK~LId 125 (143)
+...+..++.
T Consensus 125 ~~~e~~~~~~ 134 (201)
T PF12072_consen 125 REEELEELIE 134 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 313
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.24 E-value=1.4e+02 Score=24.22 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 032332 97 VEIDKLEERASLLRKELANK 116 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~K 116 (143)
.|+++|+++...|.+|+...
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555665555443
No 314
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=29.21 E-value=1.7e+02 Score=19.26 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 101 KLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.|.+-...+.+++..|...+|.|=+-+-.|+.
T Consensus 4 eL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 4 ELISLLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777776666655444444443
No 315
>PRK04654 sec-independent translocase; Provisional
Probab=29.03 E-value=1.3e+02 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.+++.|.+....+++++......||.-+++|++
T Consensus 54 l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 54 LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666667777776663
No 316
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.93 E-value=1.2e+02 Score=17.36 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
.|+++.++|++-|...- -+++.++..+|.+.
T Consensus 6 l~~~~~~~l~~~a~~~g---~s~s~~ir~ai~~~ 36 (39)
T PF01402_consen 6 LPDELYERLDELAKELG---RSRSELIREAIREY 36 (39)
T ss_dssp EEHHHHHHHHHHHHHHT---SSHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 56788888888776554 56777777777664
No 317
>PRK07737 fliD flagellar capping protein; Validated
Probab=28.91 E-value=1.2e+02 Score=27.31 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=4.6
Q ss_pred chhHHHHH
Q 032332 49 SALDEARH 56 (143)
Q Consensus 49 gaLDeAR~ 56 (143)
=.+||.++
T Consensus 379 L~iD~~kl 386 (501)
T PRK07737 379 LEIDETKL 386 (501)
T ss_pred EEEcHHHH
Confidence 35677644
No 318
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=28.77 E-value=1.3e+02 Score=20.43 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
...++..+-.+...+-+++...|..-+.||.+..+.+.
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~ 119 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQALEFVQ 119 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666777777766666666555444
No 319
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=28.75 E-value=60 Score=28.36 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHH-HHHHhhhccccC
Q 032332 96 EVEIDKLEERASLLRK-------ELANKNKYLKRLIDQL-RDLITDISTWQS 139 (143)
Q Consensus 96 qaEIekLEe~As~LRk-------Ei~~KN~~lK~LIdql-rdlI~DiS~Wqs 139 (143)
+-.|..||++...||+ ++..+-..|..-+.++ +++-+..+-||.
T Consensus 9 e~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~ 60 (316)
T TIGR00513 9 EKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQR 60 (316)
T ss_pred hHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3568888888888887 3444444555545554 566677788874
No 320
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=28.72 E-value=1.1e+02 Score=19.89 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 032332 100 DKLEERASLLRKELANKN 117 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN 117 (143)
+.|+++..+||+|+.+-.
T Consensus 9 ~eL~~~l~~l~~elf~Lr 26 (57)
T cd00427 9 EELQEKLDELKKELFNLR 26 (57)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 557788888888887654
No 321
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=28.62 E-value=2.1e+02 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.|-+.+|++-..+-+++..=.+.+|.+.+.++.+.
T Consensus 5 ~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~ 39 (195)
T cd07589 5 KEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESV 39 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999875
No 322
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.57 E-value=1.4e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.|.++|+++...|++++...+.++..+
T Consensus 46 ~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 46 EENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544443
No 323
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=28.53 E-value=1.9e+02 Score=23.23 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASL---LRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~---LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
-..|.|||+.-.. =++++..|+..|+.-++.+.+-|.|
T Consensus 90 l~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~ 130 (139)
T KOG1510|consen 90 LEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIAD 130 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777765433 2444555555544444444444444
No 324
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=28.53 E-value=1.5e+02 Score=26.82 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=6.4
Q ss_pred HHHHHHHhhhHHHHHH
Q 032332 108 LLRKELANKNKYLKRL 123 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~L 123 (143)
.|++|+..+.+.++.|
T Consensus 409 kL~~E~~~l~~ei~~l 424 (445)
T cd00187 409 KLLKELKELEAEIEDL 424 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444333333
No 325
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.52 E-value=1.2e+02 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
.||++|+++-..|-.|+.-++..+|-
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999998877777664
No 326
>PRK06991 ferredoxin; Provisional
Probab=28.47 E-value=1e+02 Score=26.08 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=16.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Q 032332 86 SPVDSVSRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 86 s~v~~v~~~DqaEIekLEe~As~LRk 111 (143)
..++.|++..+++|+.-|+|.-.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~r~~~~~~ 258 (270)
T PRK06991 233 KNTEGVSAAVQAQIDAAEARRKRLAE 258 (270)
T ss_pred CcccccCcchHHHHHHHHhhhhhhhh
Confidence 34455666667777777766655544
No 327
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.46 E-value=1.7e+02 Score=24.42 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHH-----------------HHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRK-----------------ELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRk-----------------Ei~~KN~~lK~LIdqlrdlI~ 132 (143)
+.|.++.||.+...-++|| +++.-|.-|+..|.||++-+.
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888887765555554 344456666666666665443
No 328
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=28.43 E-value=47 Score=30.00 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
.+-+.|.+.||.|+..||.||+
T Consensus 398 ~AK~reL~eLeAq~~aL~AELA 419 (419)
T PF12737_consen 398 EAKRRELEELEAQARALRAELA 419 (419)
T ss_pred HHHHHHHHHHHHHHHHHHhhhC
Confidence 3456678889999999999984
No 329
>PLN02943 aminoacyl-tRNA ligase
Probab=28.35 E-value=73 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
++|++||+++...|.+||++-++
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~ 910 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAA 910 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999888876443
No 330
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.09 E-value=5.7e+02 Score=24.91 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc------CCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAI------PNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI------~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.|++-|.+|...++-++-++.-| -+.+ +.+.......-+.....+.|.|.++...||+|....-+.+-.+
T Consensus 111 ~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~----~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~ 186 (660)
T KOG4302|consen 111 YLEGLRKQKDERRAEFKELYHQIEKLCEELGGP----EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLEL 186 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888776544 2222 1221221112235566899999999999999988777766667
Q ss_pred HHHHHHHHh
Q 032332 124 IDQLRDLIT 132 (143)
Q Consensus 124 IdqlrdlI~ 132 (143)
+..+..|..
T Consensus 187 ~~~I~~l~~ 195 (660)
T KOG4302|consen 187 KEEIKSLCS 195 (660)
T ss_pred HHHHHHHHH
Confidence 766666654
No 331
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=28.08 E-value=1.4e+02 Score=23.36 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
|+-+|+|++..+|.|. .+..|.++++.+.++..
T Consensus 22 e~~ek~eq~~~~r~~e------~~~~~~~i~e~~~~~~~ 54 (128)
T COG2916 22 EMLEKEEQVVQERQEE------EAAAIAEIEERQEKYGT 54 (128)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 4445555555555544 34455555555555543
No 332
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=28.03 E-value=2e+02 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~K 116 (143)
--.+|.+||.+|-.+|.++..+
T Consensus 45 ~~~~i~~lE~~aD~i~~~i~~~ 66 (214)
T PF01865_consen 45 LLEEIKELEHEADEIKREIREE 66 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999998764
No 333
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=27.95 E-value=2.1e+02 Score=19.75 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
++.++...|++....|++++.-+..+..-+..+
T Consensus 126 ~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 126 DSSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888877777666554444
No 334
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.93 E-value=2.2e+02 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi 113 (143)
.+++||+.|++++..|+..+
T Consensus 23 ~~~~ei~~l~~e~~elkd~~ 42 (178)
T PRK14161 23 TANPEITALKAEIEELKDKL 42 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46677777777766654433
No 335
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.81 E-value=1.6e+02 Score=24.33 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
|+.+|+-+..|++.|..-=|..+.+||-++++.
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~ 36 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDAQNELK 36 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777787777777777777777776654
No 336
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.81 E-value=2.1e+02 Score=23.30 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 032332 54 ARHRYKTSVA 63 (143)
Q Consensus 54 AR~RYK~AvA 63 (143)
-|.+|+.++.
T Consensus 55 VRkqY~~~i~ 64 (161)
T TIGR02894 55 VRKQYEEAIE 64 (161)
T ss_pred HHHHHHHHHH
Confidence 4777888765
No 337
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.78 E-value=1.7e+02 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
.|++.|.+....||++|...+.--+.||
T Consensus 56 ~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 56 NENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444
No 338
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.71 E-value=1.3e+02 Score=28.47 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
.+.|.+||+....||+|+..--..|+.+-.||
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45677888888888888877766666555444
No 339
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.67 E-value=2.8e+02 Score=21.90 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 032332 99 IDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~l 120 (143)
++.|+|+|...++.+..-.+..
T Consensus 147 ~~~L~e~Ae~ie~~~~~~~~~~ 168 (188)
T TIGR00162 147 VEALEERAKEMEKIIAKIKEME 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888877766544443
No 340
>COG4663 FcbT1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.66 E-value=1.4e+02 Score=27.22 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 90 SVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 90 ~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
-+.+-.++=++.+.|-..+|=+|++.||...|.++++-.-.-.++--|
T Consensus 302 klr~f~~eIl~a~~e~~~e~~ae~aa~np~fKeI~esq~af~~~~~~W 349 (363)
T COG4663 302 KLRPFSQEILKACREASDEVYAEKAAKNPLFKEIYESQKAFRKEAYLW 349 (363)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999887777766666
No 341
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=27.65 E-value=2.5e+02 Score=20.59 Aligned_cols=44 Identities=34% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHh
Q 032332 87 PVDSVSRSDEVEIDKLEERASLLRKELANKNK------YLKRLIDQLRDLIT 132 (143)
Q Consensus 87 ~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~------~lK~LIdqlrdlI~ 132 (143)
.++++++ +.+|.-|=+|+..||+-|...-| -|-.++-|.|-|+.
T Consensus 19 ~~dtgs~--evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrrrLl~ 68 (89)
T COG0184 19 EVDTGSG--EVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLLK 68 (89)
T ss_pred CCCCCCc--HHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHH
Confidence 3445545 78888899999999988865433 24456677776653
No 342
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=27.57 E-value=94 Score=27.76 Aligned_cols=39 Identities=41% Similarity=0.431 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKR---LIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~---LIdqlrdlI~Di 134 (143)
|-+|.+||++...+.+||..-++.||- =..-|..|+.|.
T Consensus 181 qkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 181 QKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 557899999999999999887766653 233455555553
No 343
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=27.54 E-value=1.8e+02 Score=19.01 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=22.2
Q ss_pred CHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLE-ERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLE-e~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
|..+.|++- |=..+.||||.. .=..+||-+|.-++-+
T Consensus 1 ~~~dle~~KqEIL~EvrkEl~K---~K~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 1 DSSDLERLKQEILEEVRKELQK---VKEEIIEAIRQELSRR 38 (40)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 345777774 445789999853 3335666666554443
No 344
>PF10423 AMNp_N: Bacterial AMP nucleoside phosphorylase N-terminus ; InterPro: IPR018953 This is the N-terminal domain of bacterial AMP nucleoside phosphorylase (AMNp). The N- and C-termini form distinct domains which intertwine with each other to form a stable monomer which associates with five other monomers to yield the active hexamer. The N terminus consists of a long helix and a four-stranded sheet with a novel topology. The C terminus binds the nucleoside whereas the N terminus acts as the enzymatic regulatory domain. AMNp (3.2.2.4 from EC) catalyses the hydrolysis of AMP to form adenine and ribose 5-phosphate. thereby regulating intracellular AMP levels []. ; PDB: 1T8R_B 1T8Y_E 1T8W_A 1T8S_F 2GUW_A.
Probab=27.53 E-value=81 Score=25.21 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIP 73 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~ 73 (143)
|+|.-..=|..||++||..+.+..
T Consensus 3 AV~rL~~lY~~av~~Lr~a~~~~~ 26 (160)
T PF10423_consen 3 AVARLEELYDAAVAFLRDAFAAFL 26 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999999764
No 345
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=27.53 E-value=1.9e+02 Score=23.59 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+++.++.|++.-..+.+.|..-...+..++..+-+.|.+
T Consensus 256 ~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~ 294 (306)
T PF04888_consen 256 LQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQ 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666666555555555555555443
No 346
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=27.47 E-value=93 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
-+.+.||+.|++|...|-+.|.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVE 113 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888777664
No 347
>PRK06030 hypothetical protein; Provisional
Probab=27.37 E-value=1e+02 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHhhhcc
Q 032332 116 KNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 116 KN~~lK~LIdqlrdlI~DiS~ 136 (143)
+|..+|..|+.|...|.+|.+
T Consensus 98 ~d~~lk~~v~~L~~~l~~~~~ 118 (124)
T PRK06030 98 DDAAFDARVSVLERIVNSAFT 118 (124)
T ss_pred hCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999988753
No 348
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=27.28 E-value=1.6e+02 Score=20.41 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032332 53 EARHRYKTSVAALRAVLTA 71 (143)
Q Consensus 53 eAR~RYK~AvAALRa~iaA 71 (143)
|-+||-||..|-+++++.-
T Consensus 1 EL~HRvKN~lavv~ai~~~ 19 (83)
T PF07536_consen 1 ELNHRVKNLLAVVQAIARQ 19 (83)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4589999999877766543
No 349
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=27.24 E-value=2.3e+02 Score=23.10 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~ 115 (143)
---+|+++..|..+-+.+-..-..+..- .. ...+++++.++.+...++.++..
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~---------~~------~~~~~~~~~~~~~l~~~~~~l~~ 196 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQDKLSQY---------RE------GNRPQDIAQAKASLAQAQAALAQ 196 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hc------cCCHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777777766665554433211 01 22345666666666666666554
No 350
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.23 E-value=1.9e+02 Score=25.92 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.+.++.||+++.++...+ +++...+-..+..+|-.+|+++.+
T Consensus 496 ~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~ 543 (595)
T TIGR02350 496 SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE 543 (595)
T ss_pred cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999887766543 223332233567788888877764
No 351
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=27.18 E-value=1.2e+02 Score=21.22 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~l 120 (143)
+.+|...|+.|...||.++...-..+
T Consensus 34 ~seeY~eL~~ri~~lr~~ld~~~~~~ 59 (71)
T PF08663_consen 34 ESEEYQELEDRIEELRAELDDTLDEF 59 (71)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55788889999999998876654433
No 352
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.08 E-value=2.6e+02 Score=20.59 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-|+.-++++...|.+++......+|.+-+.+..+..
T Consensus 87 re~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 87 RELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443
No 353
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=27.04 E-value=1.8e+02 Score=21.37 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 91 VSRSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 91 v~~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+...|++||+.|.+-...-|++=..+.....
T Consensus 65 ~r~LDedE~eFLd~v~~~~~~~E~~~~~ee~ 95 (102)
T PF10187_consen 65 FRGLDEDEIEFLDEVEEKKRAEERQRKREEE 95 (102)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999998876665555444443333
No 354
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=27.02 E-value=1.5e+02 Score=25.11 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYL---KRLIDQLR 128 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~l---K~LIdqlr 128 (143)
+.+.|.++-..||.|+...+..+ +.+|+++-
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444333333 44554443
No 355
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=26.92 E-value=1.5e+02 Score=28.42 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
=++|++.|+++...|++-|.+..++++.-+..|++
T Consensus 409 ~~~e~~~l~~~i~~~~~~L~~~~~~~~~el~~l~~ 443 (635)
T PRK09631 409 NQKEIRILNKELKSVEKNLKSIKGYAINFIDKLLA 443 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999988888844444444444433
No 356
>PF13643 DUF4145: Domain of unknown function (DUF4145)
Probab=26.92 E-value=1.2e+02 Score=19.81 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 57 RYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.|..|+..+|..+-.+-..-. . ... + .|.++...|++.-. ++.++..++.+|.+
T Consensus 10 ~~~~a~~~~R~~lE~~~~~~~----~-~~~------~-------~L~~~I~~l~~~~~--~~~~~~~~~~iR~~ 63 (87)
T PF13643_consen 10 DPRAAAVMARRALEFIVKELG----I-KKG------K-------NLNEKINKLRKKGL--PPDIRDWLHAIRKI 63 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHh----h-ccC------C-------CHHHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 478899999999988876611 0 111 1 36677766666544 67888888888875
No 357
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=26.91 E-value=66 Score=29.69 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
.+||.+||++...|++||..+-
T Consensus 104 ~~ei~~l~~~~~~~~~~i~~~L 125 (431)
T PLN03230 104 SAQIAELEERYDQVRRELYSRL 125 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999987653
No 358
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.83 E-value=3.8e+02 Score=22.48 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVLT 70 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~ia 70 (143)
.|=|.++....+-.|+.+.
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4556666666667777665
No 359
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.79 E-value=2.1e+02 Score=24.81 Aligned_cols=9 Identities=78% Similarity=0.984 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 032332 96 EVEIDKLEE 104 (143)
Q Consensus 96 qaEIekLEe 104 (143)
+.+|++|++
T Consensus 255 ~~~i~~l~~ 263 (406)
T PF02388_consen 255 EKEIEKLEE 263 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555555
No 360
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.75 E-value=1.6e+02 Score=24.57 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
|+|..++++..+.||.|+.+-...=-.|-.++|=
T Consensus 99 E~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 99 EEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889999999988654443334455553
No 361
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.72 E-value=1e+02 Score=28.81 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032332 98 EIDKLEERASLLRKELANK 116 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~K 116 (143)
+||.|++|..+|++++..-
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 7888888888888886633
No 362
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=26.62 E-value=5.1e+02 Score=24.44 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+..|+-.|-.|---=|..++--.|| -+++ ...++...||++|...+.+|..+
T Consensus 144 vE~ak~~yh~ack~EksA~~re~n~-------kaDs------Svspeq~kKlqdrveK~k~evqk 195 (472)
T KOG2856|consen 144 VEAAKKAYHAACKEEKSALTREQNA-------KADS------SVSPEQLKKLQDRVEKCKQEVQK 195 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------ccCc------cCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888887777777777777777 4666 45577888999988888877653
No 363
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=26.61 E-value=3.2e+02 Score=26.09 Aligned_cols=69 Identities=28% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 59 KTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVE----IDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 59 K~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaE----IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
|.+..-+|++++-|-+.++--..++-+-+.|+-+..|..| .++|+-| -.||.-||-++++-|.-.|.-|
T Consensus 371 ~~~~~~~~~~~ae~qs~qq~~~sapee~S~ds~ses~~~el~e~le~Lq~Q----~eeL~e~~n~l~qrI~eer~~v 443 (514)
T KOG4370|consen 371 KEEWQVLRAETAEIQSLQQLGDSAPEEYSSDSESESDEEELQEILELLQRQ----NEELEEKVNHLNQRIAEERERV 443 (514)
T ss_pred HHHHhhhhhhhhhhhhHhhccccCccccccCCccCccchhHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778988888877766555554333334333333333 2222222 2356667777777776666543
No 364
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.53 E-value=2e+02 Score=20.87 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.-|+.|+++...|.+.+..-+..+..+-+++..+..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558899999999999998888888888777666543
No 365
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.50 E-value=2.1e+02 Score=19.37 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
-+++|+++...+-+|+..-=...+.+.+..
T Consensus 34 ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 34 TIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444433
No 366
>PRK01203 prefoldin subunit alpha; Provisional
Probab=26.49 E-value=2.3e+02 Score=22.06 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.+|+..|++++..|+.+|..-+.....+
T Consensus 6 ~~~~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 6 EAQLNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888887754444444
No 367
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.41 E-value=2.1e+02 Score=23.81 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
+++..|....++|+|+..-+.-=..+.++||+.=.||.
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn 63 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDIN 63 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777776666666666677777666664
No 368
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.40 E-value=2.4e+02 Score=20.00 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 88 VDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 88 v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
++...+.=+..|+.|+++...|.++|..++..+..+.++|+
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556778888999999999999998888888888775
No 369
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=1.6e+02 Score=27.22 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHhhhc
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKY--LKRLIDQLRDLITDIS 135 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~--lK~LIdqlrdlI~DiS 135 (143)
..|+++|++-|.-.-+|=+-+..++.+ +..||.++|+...+|+
T Consensus 38 ~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~ 82 (411)
T KOG1463|consen 38 SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS 82 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh
Confidence 358999999999999999988887764 7789999999988876
No 370
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.31 E-value=1.6e+02 Score=23.63 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKN-KYLKRLIDQLRDL 130 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdl 130 (143)
.|++++++...||.-|.+++ ..|+.++++-++.
T Consensus 240 ~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~ 273 (279)
T PRK07417 240 SLASYRQSLDQLEELIEQENWSALEQKLEQTQEL 273 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36888888889999998776 4777777776654
No 371
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=26.29 E-value=2.4e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.+.+..|.+-..+-++..+-.+.+|.+++-+|.|.
T Consensus 12 ~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~ 46 (211)
T cd07588 12 EVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMK 46 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999874
No 372
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.26 E-value=1.5e+02 Score=19.50 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
.+.|+++++++...|+.| |..|+.=|.+|
T Consensus 29 ~~~~~~~~~~~~~~l~~e----n~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKE----WRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456777777777666554 44444444443
No 373
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.26 E-value=93 Score=26.26 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=19.4
Q ss_pred CCCCHHHHHH---HHHHHHHHHHHHHh
Q 032332 92 SRSDEVEIDK---LEERASLLRKELAN 115 (143)
Q Consensus 92 ~~~DqaEIek---LEe~As~LRkEi~~ 115 (143)
..++++-|+| ||+..+.||..|+.
T Consensus 114 ~~~~~~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 114 LPANEAALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888 89999988888874
No 374
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.24 E-value=1.6e+02 Score=23.12 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.6
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 113 LANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 113 i~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
|.+.|.+|.++|.- |.+--|.|||.
T Consensus 89 LrSENQVLGQYIeN---LMSaSSVFQst 113 (120)
T KOG3650|consen 89 LRSENQVLGQYIEN---LMSASSVFQST 113 (120)
T ss_pred hhhhhHHHHHHHHH---HHhhhhhhhcC
Confidence 45668899998865 56777888874
No 375
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.19 E-value=2.2e+02 Score=20.73 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
+.|+++|+++-..|++||..-+
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777776543
No 376
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.18 E-value=1.1e+02 Score=31.42 Aligned_cols=44 Identities=30% Similarity=0.408 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
.+-++.+||+.+...||+++.-++.++.+---.+.+-+++.=||
T Consensus 648 ~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~ 691 (1072)
T KOG0979|consen 648 RSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQ 691 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455666777777777777666666666555555555554443
No 377
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=26.17 E-value=85 Score=30.43 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
++|++|||++...|.+||++-.
T Consensus 928 ~~E~~rL~K~l~kl~~ei~~~~ 949 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSLESYL 949 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888886543
No 378
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=25.99 E-value=2.3e+02 Score=23.72 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
|.+.|=.+--.|++||++|.=-|+.+
T Consensus 210 ~F~~ivreY~~l~~~ie~k~Wal~e~ 235 (238)
T PF14735_consen 210 EFEEIVREYTDLQQEIENKRWALEEF 235 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888889999999999998666554
No 379
>PF14182 YgaB: YgaB-like protein
Probab=25.98 E-value=1.6e+02 Score=21.69 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 032332 106 ASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 106 As~LRkEi~~KN~~lK~LI 124 (143)
.-.+|.||..+.+.||.+=
T Consensus 42 l~~i~~EI~~mkk~Lk~Iq 60 (79)
T PF14182_consen 42 LHSIQEEISQMKKELKEIQ 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988754
No 380
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.97 E-value=2.2e+02 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
|.=|+-||+-...++.+|+...+.+..|-|++.-+..|
T Consensus 11 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Ae 48 (178)
T PRK14161 11 QTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAE 48 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555444444444444444433
No 381
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=2.5e+02 Score=21.72 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+|.||-|...|++.......-++.|=..|++++.+
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666677777777777777777777777766654
No 382
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.88 E-value=1.8e+02 Score=24.81 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELAN 115 (143)
Q Consensus 99 IekLEe~As~LRkEi~~ 115 (143)
+++||..-..|++||..
T Consensus 66 L~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 66 LEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 383
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.87 E-value=1.9e+02 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
.++++|+++-..|..++..++..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELER 40 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444443333
No 384
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.82 E-value=2.6e+02 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
++|=-|-.=..=+.+|-..|..|.-|
T Consensus 17 ~iDvd~i~~~~Di~~Lq~~i~~vtf~ 42 (118)
T PF13815_consen 17 AIDVDRIVRELDIDTLQENIENVTFC 42 (118)
T ss_pred ccCHHHHHhccCHHHHHHHHHhccee
Confidence 44555555555577777777777766
No 385
>PLN00135 malate dehydrogenase
Probab=25.77 E-value=37 Score=28.81 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHH
Q 032332 46 SGNSALDEARHRYKTS 61 (143)
Q Consensus 46 ~GggaLDeAR~RYK~A 61 (143)
+.|+.||.||+||-.|
T Consensus 131 g~gt~LDsaR~r~~la 146 (309)
T PLN00135 131 TCLTRLDHNRALGQIS 146 (309)
T ss_pred EeeehHHHHHHHHHHH
No 386
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=79 Score=25.84 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 84 VSSPVDSVSRSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 84 ~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K 116 (143)
|.+++-+++..|-+|-++|.++..+|+++=.++
T Consensus 128 TAss~~~IeaL~~~eAdrlr~~l~~la~~~~~d 160 (161)
T COG3402 128 TASSDHTIEALDREEADRLRERLANLARVREED 160 (161)
T ss_pred eccccceecccCHHHHHHHHHHHHHHHHhhcCC
Confidence 455566777999999999999999999876554
No 387
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=1.4e+02 Score=29.03 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
||+.++++...|+++|.+|-+.+.+|=..|
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666665555553333
No 388
>PF13166 AAA_13: AAA domain
Probab=25.73 E-value=4.9e+02 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 106 ASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 106 As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
...+++.|..-+..+..|+..|..-+.++
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~ 352 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNP 352 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444444444333
No 389
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=25.68 E-value=90 Score=29.76 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
++|++||+++...|++||.+-.
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~ 831 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVE 831 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999888887643
No 390
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.66 E-value=3.4e+02 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
..+..+++.|+++...|++|+.....
T Consensus 36 ~~~~~~~~~l~~~l~~l~~e~~el~d 61 (214)
T PRK14163 36 AGDAAATAGLTAQLDQVRTALGERTA 61 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777765433
No 391
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.64 E-value=1.9e+02 Score=18.60 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
+.+++.|+..-..|++++..
T Consensus 32 e~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766544
No 392
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.60 E-value=2.5e+02 Score=20.91 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+.|+++.+++...-|.|+..--...-.|+++|.+
T Consensus 31 ~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~ 64 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ 64 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999987755555555555544
No 393
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.53 E-value=2.3e+02 Score=20.60 Aligned_cols=32 Identities=3% Similarity=0.046 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
-++.+++.++|..++++...+-...+.-..++
T Consensus 44 l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i 75 (156)
T PRK05759 44 LAAAERAKKELELAQAKYEAQLAEARAEAAEI 75 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666555555444444433
No 394
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=25.51 E-value=1.2e+02 Score=21.81 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 102 LEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 102 LEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
++++...++.+|..+...|..+-.+|.+|
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667777777777777777777776654
No 395
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.48 E-value=1.3e+02 Score=21.61 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 032332 99 IDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~l 120 (143)
+..|+||.-.|+.||++-...+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998754443
No 396
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=25.37 E-value=98 Score=22.72 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.+++|.|-|+|....||.|+.
T Consensus 73 VT~eDIr~QE~rVk~aR~RLae 94 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKARKRLAE 94 (96)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998864
No 397
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.35 E-value=79 Score=21.72 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 032332 101 KLEERASLLRKEL 113 (143)
Q Consensus 101 kLEe~As~LRkEi 113 (143)
.|+++...|++|+
T Consensus 43 eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 43 ELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 398
>PRK04325 hypothetical protein; Provisional
Probab=25.33 E-value=2.4e+02 Score=19.52 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~l 120 (143)
++-|+.||.+..-+=+-|+.-|+.|
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889888765555555555444
No 399
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.31 E-value=2e+02 Score=24.01 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELAN 115 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~ 115 (143)
|+++|..+...|.+++.+
T Consensus 19 e~~~Lk~kir~le~~l~~ 36 (236)
T PF12017_consen 19 ENKKLKKKIRRLEKELKK 36 (236)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554444
No 400
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=25.21 E-value=1.2e+02 Score=26.91 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-++|+++....+.+...+...|+.++|+||..
T Consensus 372 ~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~ 403 (473)
T PF14643_consen 372 EKRLEQCREKHDQENQEKEAKLDIALDRLRQA 403 (473)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 35677777777888888888999999999864
No 401
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.04 E-value=2.2e+02 Score=19.07 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
++.++++...|-+-.+.....++.+-++|.++- +...|
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~-~n~kW 52 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK-SNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333444444444444445555666666666543 33344
No 402
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.03 E-value=1.4e+02 Score=27.23 Aligned_cols=8 Identities=13% Similarity=0.460 Sum_probs=4.5
Q ss_pred CchhHHHH
Q 032332 48 NSALDEAR 55 (143)
Q Consensus 48 ggaLDeAR 55 (143)
.|..|+-+
T Consensus 509 ~g~~~~~~ 516 (638)
T PRK10636 509 DGDLEDYQ 516 (638)
T ss_pred CCCHHHHH
Confidence 45666643
No 403
>PRK02224 chromosome segregation protein; Provisional
Probab=24.90 E-value=2.1e+02 Score=26.50 Aligned_cols=13 Identities=31% Similarity=0.435 Sum_probs=7.5
Q ss_pred chhHHHHHHHHHH
Q 032332 49 SALDEARHRYKTS 61 (143)
Q Consensus 49 gaLDeAR~RYK~A 61 (143)
+.|++.+.+|+.+
T Consensus 162 ~~~e~~~~~~~~~ 174 (880)
T PRK02224 162 GKLEEYRERASDA 174 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666666663
No 404
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=24.86 E-value=84 Score=22.03 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..|+.+|-..=.+...|++++..--.+=...|++||..|.+
T Consensus 37 ~~d~v~lS~~a~~l~~~~~~~~~~p~v~~~kV~~ik~aI~~ 77 (95)
T TIGR03824 37 SGDSVTLSSAAQQLQSLEAALASSPDVDAEKVAEIKAAIAN 77 (95)
T ss_pred CCCeEEECHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHc
Confidence 34555555555555556666666666666667777776654
No 405
>PLN03184 chloroplast Hsp70; Provisional
Probab=24.85 E-value=5e+02 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~ 132 (143)
..+++|.++|++....+++-|...+ ..+|..+++|++.+.
T Consensus 588 ~~~~eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~ 628 (673)
T PLN03184 588 KVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVM 628 (673)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5678888999999999888776543 345555555554443
No 406
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.84 E-value=2.2e+02 Score=18.95 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELA----NKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~----~KN~~lK~LIdqlrdlI~D 133 (143)
|+.|+++-..|-.+|. .+...|...+++|...+..
T Consensus 52 ~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 52 RNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444444433 3445555555555554443
No 407
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.84 E-value=2.7e+02 Score=21.60 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.-+..|.-.|-.+..|..|+..|...+..|-.+|.++..
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777888888888888888888888877764
No 408
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=24.82 E-value=24 Score=27.04 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~ 119 (143)
+-.|.+||+....|.+||.+|...
T Consensus 59 k~qI~~Lq~~s~~l~~eL~~~~~~ 82 (114)
T PF09307_consen 59 KGQIKKLQKTSQNLQLELTRKLPA 82 (114)
T ss_dssp ------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhhCCC
Confidence 567999999999999999888754
No 409
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.72 E-value=1.4e+02 Score=22.61 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
+.||+.+|.+...+++++..=++.+|.
T Consensus 169 ~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 169 ENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999888888777766555544
No 410
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=24.72 E-value=1.5e+02 Score=28.12 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=5.8
Q ss_pred chhHHHHHH
Q 032332 49 SALDEARHR 57 (143)
Q Consensus 49 gaLDeAR~R 57 (143)
=.||+++++
T Consensus 544 L~lDe~KL~ 552 (661)
T PRK06664 544 LELDEKKLD 552 (661)
T ss_pred EEEcHHHHH
Confidence 367887554
No 411
>CHL00094 dnaK heat shock protein 70
Probab=24.67 E-value=2e+02 Score=26.15 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHH------HHHH-HhhhHHHHHHHHHHHHHHhh
Q 032332 91 VSRSDEVEIDKLEERASLL------RKEL-ANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 91 v~~~DqaEIekLEe~As~L------RkEi-~~KN~~lK~LIdqlrdlI~D 133 (143)
+.+.++.||+++.+++..+ +++. +.|| .+..+|-.+|+++.+
T Consensus 499 ~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn-~le~~i~~~~~~l~~ 547 (621)
T CHL00094 499 ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKN-QAESLCYQAEKQLKE 547 (621)
T ss_pred chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 3478899999998888643 2333 3344 567788888877754
No 412
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.63 E-value=2.5e+02 Score=19.71 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
++...+-..++..=++....++.-++.|-.+|-.|-++|+
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555444444444443
No 413
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=24.59 E-value=1.2e+02 Score=29.05 Aligned_cols=6 Identities=50% Similarity=0.462 Sum_probs=2.8
Q ss_pred HHhcCC
Q 032332 69 LTAIPN 74 (143)
Q Consensus 69 iaAI~~ 74 (143)
+.|+.+
T Consensus 389 ~~~~~~ 394 (742)
T PRK05561 389 LIAFLN 394 (742)
T ss_pred HHHHhh
Confidence 444444
No 414
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=24.56 E-value=2e+02 Score=26.72 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.+.++.||+++.+++..+ |+.++.|| .+..+|-.+|+++.+
T Consensus 539 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN-~lEs~iy~~r~~l~e 586 (663)
T PTZ00400 539 GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKN-EAETLIYSVEKQLSD 586 (663)
T ss_pred ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 468889999988887754 33334444 577778778877765
No 415
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=24.55 E-value=56 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=25.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
-.+|++=..-|..++.-|+.++.++...
T Consensus 70 ~~al~~C~~~y~~a~~~L~~a~~~l~~~ 97 (148)
T smart00856 70 KAALKDCLELYDDAVDSLEKALEELKSG 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999998754
No 416
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=24.53 E-value=1.6e+02 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
..||.||.-|...+|+-|..
T Consensus 219 ~EEl~RL~sHl~~f~~~L~~ 238 (291)
T TIGR00255 219 AEEIDRLDSHVKEFYNILKK 238 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36888888888888877654
No 417
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=24.51 E-value=2.2e+02 Score=23.22 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKE-------LANKNKYLKRLIDQL 127 (143)
Q Consensus 97 aEIekLEe~As~LRkE-------i~~KN~~lK~LIdql 127 (143)
.+|.+|+++-..|.+| ..-.+...+.||.-|
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444 444444444444433
No 418
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.50 E-value=3e+02 Score=21.44 Aligned_cols=44 Identities=30% Similarity=0.495 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHhhhccccCCC
Q 032332 98 EIDKLEERASLL----RKELANKNKYLKRLIDQLRDLITDISTWQSPC 141 (143)
Q Consensus 98 EIekLEe~As~L----RkEi~~KN~~lK~LIdqlrdlI~DiS~Wqspc 141 (143)
.|++-++.+.++ |+|++.--.|||.=|.++.+.+.++..|-+|.
T Consensus 19 ~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~ 66 (146)
T PF07295_consen 19 ALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEELREWLSPD 66 (146)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 344444544444 77888888888888888888888877777763
No 419
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=24.42 E-value=1.8e+02 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHhhhccccC
Q 032332 97 VEIDKLEERASLLRKELANK------NKYLKRLIDQLRDLITDISTWQS 139 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~K------N~~lK~LIdqlrdlI~DiS~Wqs 139 (143)
+.|++..++-..+++.|... ...|..+|+.|+.+|.-.-.|..
T Consensus 252 ~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~v~~l~~~~~Gn~~Ws~ 300 (303)
T cd00687 252 DMHNERITQFEELEASLIKSGDLEEESPAVRAYVEGLHNWISGNLDWHR 300 (303)
T ss_pred HHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhccchhc
Confidence 34556666777777777543 45789999999999998888853
No 420
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.38 E-value=2.1e+02 Score=18.65 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLT 70 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~ia 70 (143)
|-.++|..-|+.|+.-|--.+.
T Consensus 20 g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 20 GNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 6678899999988887765543
No 421
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.26 E-value=1.7e+02 Score=27.69 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 57 RYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
+|+.....|...+.-+.-...--..-+.+- ..|..++++.|+|...|+.=..+-+.-+-.|+....
T Consensus 263 ~l~~~~~~l~ea~~~l~ea~~el~~~~~~l------e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~ 328 (557)
T COG0497 263 KLSELAELLEEALYELEEASEELRAYLDEL------EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLD 328 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455555555544444433311111112333 689999999999999998643333332444443333
No 422
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.05 E-value=4e+02 Score=21.80 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-+...|++|++.+....+.++..-....+..|+.|.+.
T Consensus 150 ~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~ 187 (240)
T cd07672 150 LVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKI 187 (240)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999887777777777777543
No 423
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=24.01 E-value=61 Score=22.92 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHH
Q 032332 115 NKNKYLKRLIDQLR 128 (143)
Q Consensus 115 ~KN~~lK~LIdqlr 128 (143)
.++..||+||.||+
T Consensus 32 ~~d~FLkLLvaQLq 45 (81)
T PF03963_consen 32 DQDDFLKLLVAQLQ 45 (81)
T ss_pred cHHHHHHHHHHHHh
Confidence 46788999999997
No 424
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=24.00 E-value=1.5e+02 Score=22.68 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+.-.+++++|.+....++.+-.........+++++.+++.
T Consensus 83 ~~~~~~l~~l~~~~~~~~p~~~~~~~~~~~~l~~l~~l~~ 122 (209)
T PF14023_consen 83 PEASDALDRLWDALRALEPQTDAQEALQAEALSALNDLID 122 (209)
T ss_pred hhhHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHH
Confidence 4566778888888777766655555566666666666643
No 425
>PRK06798 fliD flagellar capping protein; Validated
Probab=23.99 E-value=1.7e+02 Score=26.03 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=7.0
Q ss_pred CCchhHHHHHHH
Q 032332 47 GNSALDEARHRY 58 (143)
Q Consensus 47 GggaLDeAR~RY 58 (143)
|-=.||+++++-
T Consensus 329 G~L~lD~~kL~~ 340 (440)
T PRK06798 329 GTMKVDEEALKK 340 (440)
T ss_pred CCEEEcHHHHHH
Confidence 444567776553
No 426
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.93 E-value=2e+02 Score=24.72 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+++++.|+.+...|+++++..+..++
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444443
No 427
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.93 E-value=2.2e+02 Score=22.33 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
-|.=.|-|...||+++..-...+..||+.-|+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~ 72 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARE 72 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666676666555555666655544
No 428
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.93 E-value=2.9e+02 Score=20.64 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
|.+.|+.||+.+..++.|+....+.++.+
T Consensus 60 d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 60 DYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 55566666666666655555544444333
No 429
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=23.88 E-value=2.7e+02 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELA 114 (143)
Q Consensus 99 IekLEe~As~LRkEi~ 114 (143)
++.|+|+|...|+++.
T Consensus 203 ~~~L~e~Ae~ie~~~~ 218 (238)
T TIGR00161 203 PEPLLKEAEAIESRLK 218 (238)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888887776553
No 430
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=23.76 E-value=2.3e+02 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..+|.++=..++.|-..+..+...+..+|+++..++.
T Consensus 166 ~~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~ 202 (291)
T TIGR00996 166 GPQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLD 202 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4566666666666666676666777777776666544
No 431
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.76 E-value=59 Score=27.15 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+.=..|.|+..|+=|.-..+-... .|| +--|..||+....||.+++. ||.-+.+||+++
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~-----~e~------------~~r~~~leken~~lr~~v~~----l~~el~~~~~~~ 252 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKE-----DEM------------AHRVAELEKENEALRTQVEQ----LKKELATLRRLF 252 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHH-----HHH------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 444567777777776655442222 111 12245566666666666543 444445555554
No 432
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=23.68 E-value=3.9e+02 Score=21.48 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN 117 (143)
..+||..|.+..+.++++|..-.
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~~ 240 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERMM 240 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999998888887765433
No 433
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.64 E-value=2.5e+02 Score=19.51 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLL 109 (143)
Q Consensus 97 aEIekLEe~As~L 109 (143)
-||++|+++-..|
T Consensus 25 ~e~eeLke~n~~L 37 (72)
T PF06005_consen 25 MENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 4566666654444
No 434
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.61 E-value=2.1e+02 Score=22.88 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.|+..|.-+..|+..|.+--|..|.+||-.+.+..
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~ 37 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVN 37 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777767777777776665544
No 435
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.59 E-value=2e+02 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|++||.+.-.-+..-..+|+.|=.
T Consensus 44 ~lLq~e~~~~e~~le~d~~~L~~Le~ 69 (160)
T PF13094_consen 44 ELLQEEIEKEEAALERDYEYLQELEK 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555444444444444433
No 436
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=2.1e+02 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKE 112 (143)
Q Consensus 98 EIekLEe~As~LRkE 112 (143)
|+.+++|+...|--|
T Consensus 58 e~~s~Q~~~~~L~~e 72 (247)
T COG3879 58 ELRSLQKKVNTLAAE 72 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444333333
No 437
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=23.55 E-value=1.7e+02 Score=26.57 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
+++|++||++...|-++++.
T Consensus 574 e~~i~~le~~~~~~~~~~~~ 593 (635)
T PRK11147 574 PQLLEDLEAEIEALQAQVAD 593 (635)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555555543
No 438
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=23.52 E-value=1.3e+02 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~ 115 (143)
|..|+..++.+...+|.++-+
T Consensus 36 ~p~El~~i~~kl~~~R~~FLn 56 (62)
T PF06034_consen 36 NPKELQEIEKKLQELRQNFLN 56 (62)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999998754
No 439
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.49 E-value=1.7e+02 Score=26.67 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.....+|+.|.++-..|||+|-.++-.+..-++.|.+-+.+|
T Consensus 132 ~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 132 EKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Confidence 567789999999999999999999888777777766666554
No 440
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=23.45 E-value=1.9e+02 Score=18.84 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=18.5
Q ss_pred CCCHHHHHHHH--HHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLE--ERASLLRKELANK 116 (143)
Q Consensus 93 ~~DqaEIekLE--e~As~LRkEi~~K 116 (143)
..|.+.+++|. ++...+|.+...+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T PF07813_consen 51 SFDEAAPEALAAMAEMMELRAEMMEE 76 (100)
T ss_dssp S--HHHHHHHH--HHCHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999 8888888887544
No 441
>PRK05560 DNA gyrase subunit A; Validated
Probab=23.43 E-value=1.4e+02 Score=28.61 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcCCcc
Q 032332 61 SVAALRAVLTAIPNSH 76 (143)
Q Consensus 61 AvAALRa~iaAI~~~~ 76 (143)
|+.-+..+|.-|-++.
T Consensus 381 ~~~~~d~vI~iir~s~ 396 (805)
T PRK05560 381 ALDNIDEVIALIRASP 396 (805)
T ss_pred HHHhhHHHHHHHHcCC
Confidence 4455556666555553
No 442
>PRK14150 heat shock protein GrpE; Provisional
Probab=23.43 E-value=1.8e+02 Score=23.38 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRK 111 (143)
Q Consensus 96 qaEIekLEe~As~LRk 111 (143)
+.+|+.|+++...|.+
T Consensus 40 ~~~i~~l~~~l~~~~~ 55 (193)
T PRK14150 40 DARIAELEAQLAEAQA 55 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666555
No 443
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=23.41 E-value=2.1e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN---KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN---~~lK~LIdqlrdlI~Di 134 (143)
..+..|.+++++....+|+-|...+ ..++..++.|++++..+
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 619 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMEC 619 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999998644 56777777777776554
No 444
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.38 E-value=4.5e+02 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCC
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPN 74 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~ 74 (143)
-|.+.|.||+.-+.++|..=..+.+
T Consensus 120 kL~~tr~~Y~~L~~aM~~Ae~km~P 144 (201)
T PF11172_consen 120 KLAETRRRYAQLIKAMRRAESKMQP 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3789999999999999987665544
No 445
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=23.26 E-value=1.2e+02 Score=26.53 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-ccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 54 ARHRYKTSVAALRAVLTAIPNSHKA-KSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 54 AR~RYK~AvAALRa~iaAI~~~~ka-~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
...+|=.||+.||.....+-.+.++ ++|..+..+-..+++.......+|.+.+....++.++-|..
T Consensus 260 e~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdf 326 (353)
T cd09243 260 AKDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPGTTAKPDQHLFFRKLGPLVKRTLEKCERENGF 326 (353)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhhHHHHHHHHHHHHHHHHHhhhhce
Confidence 3467888888888887766554332 22221111000112223445778888888888888888864
No 446
>PRK08507 prephenate dehydrogenase; Validated
Probab=23.25 E-value=1.9e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKN-KYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN-~~lK~LIdqlrd 129 (143)
.|++++++...||+.|..++ ..++.++++-|+
T Consensus 238 ~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~ 270 (275)
T PRK08507 238 AIDEFIKELEQFKQLIENEDWEELEEWMEQANK 270 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777777777776554 355555555443
No 447
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.21 E-value=2.1e+02 Score=22.20 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCcc-----------ccccccc--------cCCCCCCCCCCCHHHHHHHHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNSH-----------KAKSFEM--------VSSPVDSVSRSDEVEIDKLEERASLL 109 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~~-----------ka~~~e~--------~~s~v~~v~~~DqaEIekLEe~As~L 109 (143)
.+|..|+.||..+..+|... . .+.. +++-.++ ++- .|++.-.+=|+.|+.|...|
T Consensus 27 ~~L~~a~~e~~~~ie~L~~l-~--~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy---~VEk~~~eA~~~~~~ri~~l 100 (144)
T PRK14011 27 SSIDMMKMELLKSIESMEGL-K--TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI---YLEKDVSEVIEDFKKSVEEL 100 (144)
T ss_pred HHHHHHHHHHHHHHHHHHcc-C--CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe---EEEecHHHHHHHHHHHHHHH
Confidence 35788999999999888732 1 1110 0000000 111 23455566678888777777
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 032332 110 RKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 110 RkEi~~KN~~lK~LIdqlrdl 130 (143)
.+.+..-+..+..+-.+++.+
T Consensus 101 ~~~~~~l~~~i~~~~~~~~~l 121 (144)
T PRK14011 101 DKTKKEGNKKIEELNKEITKL 121 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 776555555555544444443
No 448
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=23.20 E-value=2.5e+02 Score=21.41 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 91 VSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 91 v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
|-..|.+.+.+.-.+-..++..+..-|..+.+.|..+-..++
T Consensus 148 ~i~~dN~~l~~~~~~~~~~~~~~~~~N~~i~~~i~~i~~~~r 189 (192)
T smart00864 148 LIVIDNDALLDICGRNLPIRPAFKDANDLLAQAVSGITDLIR 189 (192)
T ss_pred EEEEEhHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 335566655543332223466777777777766666555443
No 449
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=23.12 E-value=1.7e+02 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
|+..|++++..|+|+ +.....+++.+++-+.
T Consensus 55 e~k~L~~~~~~l~kq----t~qw~~~~~~~~~~LK 85 (121)
T PF06320_consen 55 EAKQLQRNTAKLAKQ----TDQWLKLVDSFNDALK 85 (121)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 333455555555544 5555566666665443
No 450
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=23.09 E-value=1.1e+02 Score=19.94 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 032332 100 DKLEERASLLRKELANKN 117 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN 117 (143)
+.|++...+||+|+.+-.
T Consensus 8 ~EL~~~l~~lr~eLf~Lr 25 (55)
T TIGR00012 8 EELAKKLDELKKELFELR 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777888888887544
No 451
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=23.03 E-value=2.3e+02 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKN-KYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~ 132 (143)
.|+++++....+|+-|+.++ .-++.++++-++.-.
T Consensus 251 ~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~ 286 (307)
T PRK07502 251 MLGRFTEDLAALQRAIRWGDGDALFDLFTRTRAIRR 286 (307)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46888888888888887766 466777766655443
No 452
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.93 E-value=1.3e+02 Score=15.56 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCc
Q 032332 55 RHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~ 75 (143)
.-+|..|+..++.+|.--|+|
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTTS
T ss_pred ccCHHHHHHHHHHHHHHCcCC
Confidence 347888999999998887764
No 453
>PHA02107 hypothetical protein
Probab=22.90 E-value=1.2e+02 Score=25.82 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
.||.+|+ +||||++.+-|-+|--|
T Consensus 191 ~EI~~LQ----A~RKEiEDN~K~IKN~I 214 (216)
T PHA02107 191 EEIKELQ----ARRKEIEDNIKSIKNAI 214 (216)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhhc
Confidence 4676665 68999999888777544
No 454
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=22.89 E-value=97 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 64 ALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 64 ALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K 116 (143)
.+|.+|.+|-..+|. | ..+..++.-+-++.+.+||||=.+
T Consensus 261 ~tr~ii~~i~~~~k~---~----------~~~~~~~~~~~~~l~~~rk~~L~~ 300 (340)
T TIGR03575 261 TLRRIISQTMREAKD---E----------QASAYNLKLLAEELNKLKADFLED 300 (340)
T ss_pred HHHHHHHHHHHHHHh---c----------cCChHHHHHHHHHHHHHHHHHHHH
Confidence 478888888776553 2 345677887888889999987554
No 455
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.89 E-value=3.4e+02 Score=20.54 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
=..+|...++....+|+++..-...-..+..+...|-...
T Consensus 96 l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 96 LKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777788888888887766655555555555544333
No 456
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.84 E-value=1.3e+02 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
+.+.+|..||+.=...||+.|...-.|
T Consensus 21 ~~~~~e~~RL~~~~~~lr~~L~~~G~y 47 (140)
T PF11684_consen 21 GQTPAEAARLAALTDQLREALAESGRY 47 (140)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 458999999999999999999987743
No 457
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.81 E-value=1.2e+02 Score=21.01 Aligned_cols=18 Identities=50% Similarity=0.588 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELA 114 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~ 114 (143)
.||.+|-+....||||+.
T Consensus 47 ~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 47 EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777777777744
No 458
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.79 E-value=2.6e+02 Score=20.53 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
+-..||+..+.+.+-+..-+..=++|.+||-
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555566666654
No 459
>PRK11820 hypothetical protein; Provisional
Probab=22.78 E-value=1.8e+02 Score=24.76 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
..||.||.-|...+|+-|..
T Consensus 216 ~EEi~RL~sHl~~f~~~L~~ 235 (288)
T PRK11820 216 AEELDRLKSHLKEFREILKK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888877654
No 460
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=22.72 E-value=1.5e+02 Score=22.10 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHhhhc
Q 032332 98 EIDKLEERASLLRKELAN-----KNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~-----KN~~lK~LIdqlrdlI~DiS 135 (143)
-..||++=++.||-=++. |.+.++.||+.+.+++.+-.
T Consensus 78 ~~~RL~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 78 AESRLSSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 457999999999988775 45678899999999988765
No 461
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=22.68 E-value=41 Score=28.43 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHH
Q 032332 46 SGNSALDEARHRYKTS 61 (143)
Q Consensus 46 ~GggaLDeAR~RYK~A 61 (143)
+.|+.||.||+||-.|
T Consensus 148 g~gt~LDs~R~r~~la 163 (324)
T TIGR01758 148 SALTRLDHNRALAQVA 163 (324)
T ss_pred EEeeehHHHHHHHHHH
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=22.61 E-value=2.8e+02 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 032332 102 LEERASLLRKEL 113 (143)
Q Consensus 102 LEe~As~LRkEi 113 (143)
++.+...|+.+|
T Consensus 211 ~~~~l~el~~~i 222 (880)
T PRK02224 211 LESELAELDEEI 222 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 463
>smart00338 BRLZ basic region leucin zipper.
Probab=22.60 E-value=2.2e+02 Score=18.28 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKEL 113 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi 113 (143)
.+.|+.||.+...|..|.
T Consensus 25 k~~~~~Le~~~~~L~~en 42 (65)
T smart00338 25 KAEIEELERKVEQLEAEN 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777776643
No 464
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=22.60 E-value=3.5e+02 Score=20.49 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-.+-|+++...|+++|.. |..+.+.|..++.
T Consensus 85 ~~~ll~~k~~~l~~~i~~----L~~~~~~L~~~~~ 115 (144)
T PRK13752 85 ASSLAEHKLKDVREKMAD----LARMEAVLSELVC 115 (144)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 356677777777777765 4455555555553
No 465
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=99 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKEL 113 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi 113 (143)
..+|+.||+|...|-.++
T Consensus 89 ~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 89 TERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456777777776665544
No 466
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=22.46 E-value=2.3e+02 Score=21.45 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 032332 90 SVSRSDEVEIDKLEERASL 108 (143)
Q Consensus 90 ~v~~~DqaEIekLEe~As~ 108 (143)
.|...+++||++|++-.+.
T Consensus 44 ~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 44 RTKDLTDEQISALREIIEE 62 (122)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 3457889999999988763
No 467
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.43 E-value=2e+02 Score=24.77 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.|...+.+-++.+..+--++..+...|+.=+.+|+.+..+|
T Consensus 157 ~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 157 KEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 346677777888888888888888888888888888877766
No 468
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=22.41 E-value=84 Score=20.11 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 032332 118 KYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 118 ~~lK~LIdqlrdlI~DiS 135 (143)
.++|-|..||+||-.-++
T Consensus 12 e~IKsLt~QlK~maekl~ 29 (39)
T PF13713_consen 12 EVIKSLTAQLKDMAEKLP 29 (39)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 578889999998865543
No 469
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.38 E-value=1.3e+02 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred HhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 70 TAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 70 aAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
+|+.+..+-.++++..+ -=|++|+.||++.-.||.-|.
T Consensus 172 aa~a~~~~~~a~a~~s~-------dlearv~aLe~eva~L~~rld 209 (215)
T COG3132 172 AAVAQPAETDAPAAASS-------DLEARVEALEQEVAELRARLD 209 (215)
T ss_pred hhhcCcccccCcccccc-------hHHHHHHHHHHHHHHHHHHHH
Confidence 45554444444443333 246778888888777776654
No 470
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=22.38 E-value=1.5e+02 Score=22.65 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHHHHHH--HHHHHhcCCccccccccccCCCCCCCCCCCHHHH-HHHHHHHHHHHH
Q 032332 55 RHRYKTSVAAL--RAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEI-DKLEERASLLRK 111 (143)
Q Consensus 55 R~RYK~AvAAL--Ra~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEI-ekLEe~As~LRk 111 (143)
|.|+||.+++| -+.+.+|--- ++- .+-|+++ |.|||.+...|.
T Consensus 46 ~~R~rN~~Tgl~L~~~v~gIY~Y-----------Ti~---sV~Qe~F~D~~eeeak~~~~ 91 (100)
T PF09813_consen 46 RRRRRNLLTGLALGAFVVGIYAY-----------TIY---SVKQEDFLDELEEEAKAARA 91 (100)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhh-----------eee---eechhhhHHHhhhHHHHhhh
Confidence 56788888764 5556665533 222 3444553 557777776664
No 471
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=22.35 E-value=4.4e+02 Score=24.08 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+.-+-+.-|. +|+|+|- ...|.|++ |.+.-++-++||+++...|++++..-...++
T Consensus 246 s~~ek~~~yn---~Anr~VA-i~cnntra------------V~k~~~~~m~k~~~ki~~~~~~~~~~~~~~~ 301 (391)
T smart00435 246 NVAEKILAYN---RANREVA-ILCNHQRT------------VSKTHEKSMEKLQEKIKALKYQLKRLKKMIL 301 (391)
T ss_pred CHHHHHHHHH---HHHHHHH-HHhCCCCC------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444454 4666653 44466332 3466677889999988888888776665555
No 472
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.32 E-value=1.6e+02 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.++|+-+|+|+..|-.=|.+|+..|..|
T Consensus 166 ~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888777654
No 473
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.27 E-value=4e+02 Score=21.12 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
++++.|+++...|++|+......-...|++|++
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455556666666666666333222233555544
No 474
>PTZ00421 coronin; Provisional
Probab=22.26 E-value=1.6e+02 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 103 EERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 103 Ee~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
++....+||++..|...+-+.|..++.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (493)
T PTZ00421 466 HEEIKRCREALQKKESIVMETLEKIQS 492 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566788888888776666665543
No 475
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.26 E-value=1.4e+02 Score=28.18 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..|+++|..|-+.|.+|+-.|-|-|
T Consensus 399 ~~~~e~i~~kE~eLe~L~~elDdkv 423 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTRELDDKV 423 (492)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccc
Confidence 4578888999998888887776654
No 476
>PRK05086 malate dehydrogenase; Provisional
Probab=22.22 E-value=1.4e+02 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+.++.|.++|++-+..||++|..--.+++
T Consensus 283 ~L~~~E~~~l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 283 TLSAFEQNALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999877655543
No 477
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=22.17 E-value=1.3e+02 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK 121 (143)
-||+.+|++.+.|+.+|..-.+.|+
T Consensus 3 ~~~~~~e~~~~~l~~~i~~~~~~l~ 27 (154)
T PF13015_consen 3 KEIDEAERKLSDLESKIRELEDDLN 27 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788889999999988877666554
No 478
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.16 E-value=2.2e+02 Score=24.42 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
=+.+|..|+.++..||- |...+...+..+.++.+.
T Consensus 61 l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~ 95 (262)
T COG1729 61 LEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEEN 95 (262)
T ss_pred HHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 36778888888888885 444444444444555544
No 479
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.10 E-value=3e+02 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLT 70 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~ia 70 (143)
|=-|..-|.+|...++|......
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~ 105 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYE 105 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888877654443
No 480
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.07 E-value=2.3e+02 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
..-+.||+.|+.+.-.|-.+|+.+.+.+-+|
T Consensus 102 e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777776666666666554444333
No 481
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.01 E-value=2e+02 Score=20.84 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
.++.|+++...+.+++..-..-++.+-+++
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444433333333333
No 482
>PRK00736 hypothetical protein; Provisional
Probab=21.97 E-value=2.7e+02 Score=18.95 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~l 120 (143)
++-|+.||.+..-+=+-|+.-|+.|
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v 28 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888766555555555544
No 483
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.94 E-value=1.8e+02 Score=19.63 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 032332 57 RYKTSVAALRAVLTAIP 73 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~ 73 (143)
+.-..|..|+-.+.-|-
T Consensus 7 ~in~~v~~l~k~~~~lG 23 (102)
T PF14523_consen 7 KINQNVSQLEKLVNQLG 23 (102)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 33445556665555554
No 484
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.93 E-value=2.7e+02 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
....+.|.-|+|-..|-++..+-.|.+|.++|-+|.|
T Consensus 8 T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m 44 (225)
T cd07590 8 TVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLAL 44 (225)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777788888888887765
No 485
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.91 E-value=1.2e+02 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELAN 115 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~ 115 (143)
.+++.||++...|+.+++.
T Consensus 112 ~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666554
No 486
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=21.90 E-value=1.4e+02 Score=26.20 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHH-HHHHhhhccccC
Q 032332 96 EVEIDKLEERASLLRKELAN-------KNKYLKRLIDQL-RDLITDISTWQS 139 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~-------KN~~lK~LIdql-rdlI~DiS~Wqs 139 (143)
+..|..||++...||+--.. .-..|+.-++++ +++.++.+-||.
T Consensus 9 e~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~ 60 (319)
T PRK05724 9 EKPIAELEAKIEELRAVAEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQK 60 (319)
T ss_pred hhHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCHHHh
Confidence 45688899999888873222 222232333333 556667788885
No 487
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.89 E-value=1.9e+02 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
+++|+++.+++..--+.+...-.++..+|.
T Consensus 27 ~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 27 NDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566766665555444444444444444443
No 488
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.88 E-value=2.7e+02 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+..++||+.|+++...|++++..
T Consensus 35 ~~~~~e~~~l~~~l~~l~~e~~e 57 (194)
T PRK14162 35 QEKQNPVEDLEKEIADLKAKNKD 57 (194)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 44566777777777777766653
No 489
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.84 E-value=62 Score=27.19 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSV 62 (143)
Q Consensus 48 ggaLDeAR~RYK~Av 62 (143)
|+.||-+|+||-.|-
T Consensus 144 gt~LDs~R~~~~la~ 158 (307)
T cd05290 144 GTMLDTARLRRIVAD 158 (307)
T ss_pred cchHHHHHHHHHHHH
Confidence 789999999997664
No 490
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=21.77 E-value=1.2e+02 Score=21.30 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=26.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhccccCCCC
Q 032332 109 LRKELANKNKYLKRLIDQLRDLITDISTWQSPCS 142 (143)
Q Consensus 109 LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqspcs 142 (143)
|.+.|. +...+...+..+++++.+++...+|-+
T Consensus 28 l~~~i~-~~~~~~~~~~~fk~~l~~~sv~rpp~~ 60 (101)
T PF14769_consen 28 LEKNIE-KGMSLEDSFKYFKELLLRHSVQRPPFS 60 (101)
T ss_pred HHHHHH-ccCCHHHHHHHHHHHHHHhccCCCCcc
Confidence 444666 777888899999999999999988765
No 491
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.75 E-value=2.6e+02 Score=18.82 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRK 111 (143)
Q Consensus 99 IekLEe~As~LRk 111 (143)
|++++++..+||+
T Consensus 16 l~~~~~~l~el~~ 28 (92)
T PF14712_consen 16 LDRLDQQLQELRQ 28 (92)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544444
No 492
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=21.74 E-value=3.2e+02 Score=22.10 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-|++.+.++|+....-++++..-|..||.-+=+|-++
T Consensus 141 kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~ 177 (224)
T cd07591 141 EDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDL 177 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678999999999999999999999998766666553
No 493
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=21.70 E-value=1.7e+02 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~ 115 (143)
....||++|+++...|.+||+.
T Consensus 399 LT~~e~~kL~~e~~~l~~ei~~ 420 (439)
T PHA02592 399 MTSDEREKLQKEAEELEKEHEY 420 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888765
No 494
>PF14282 FlxA: FlxA-like protein
Probab=21.68 E-value=3.2e+02 Score=19.75 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
...|++|+++...|.++|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6789999999988888774
No 495
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=21.62 E-value=1.6e+02 Score=20.42 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~K 116 (143)
..++.+++.+.+.+..+|..|.+|
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~i~n~ 120 (120)
T PF01152_consen 97 GVPEELIDELLARLESLRDDIVNK 120 (120)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999876
No 496
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=21.57 E-value=2.3e+02 Score=25.79 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.++.++|++-...|.+|+..+|.-|.....+|+++
T Consensus 327 ~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~ 361 (373)
T COG5019 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDL 361 (373)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=21.53 E-value=2e+02 Score=20.85 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHH-----HHHHHHHHHhhhcc
Q 032332 99 IDKLEERASLLRKELANKN--KYLKR-----LIDQLRDLITDIST 136 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN--~~lK~-----LIdqlrdlI~DiS~ 136 (143)
++.|+++..+||+|+.+-. ....+ .|-++|--|+-|-|
T Consensus 10 ~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilT 54 (87)
T PRK00461 10 VEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILT 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHH
No 498
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.53 E-value=86 Score=29.23 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
| +||.|++|..+|++++..-++.|...=.+
T Consensus 31 q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 31 Q-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred H-HHHHHHHHHHHHHHhhcccccccchhhHh
No 499
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.47 E-value=2.3e+02 Score=28.26 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---Hhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL---ITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl---I~Di 134 (143)
+.||+++++....||+++.....-...+-+++..| |.++
T Consensus 828 e~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el 869 (1311)
T TIGR00606 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=21.43 E-value=2.5e+02 Score=20.30 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
||+||-.||. +-=|+++-..-+--|..||++..+
T Consensus 15 EI~RL~~HAe--~al~~~Nk~~Y~YAI~KLR~i~kQ 48 (70)
T PF10849_consen 15 EIKRLKKHAE--EALIENNKEGYVYAIKKLRDIYKQ 48 (70)
T ss_pred HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHcC
Done!