Query 032332
Match_columns 143
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 20:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_A Transcription factor DP 93.6 0.11 3.9E-06 40.3 5.4 35 96-130 4-38 (155)
2 1gmj_A ATPase inhibitor; coile 93.0 0.4 1.4E-05 34.2 7.0 15 55-69 35-49 (84)
3 3lay_A Zinc resistance-associa 90.2 1.3 4.4E-05 34.2 7.8 59 52-119 77-135 (175)
4 1ykh_B RNA polymerase II holoe 88.2 1.2 4.2E-05 32.6 6.1 40 96-135 91-130 (132)
5 1nkp_B MAX protein, MYC proto- 88.1 2.1 7.1E-05 28.3 6.6 57 55-128 14-78 (83)
6 1yke_B RNA polymerase II holoe 87.3 1.4 4.9E-05 33.2 6.1 41 96-136 91-131 (151)
7 1ses_A Seryl-tRNA synthetase; 86.3 3.5 0.00012 34.7 8.5 70 50-134 32-101 (421)
8 1nkp_A C-MYC, MYC proto-oncoge 85.9 0.76 2.6E-05 31.5 3.6 66 55-128 18-86 (88)
9 2hzl_A Trap-T family sorbitol/ 85.6 1 3.4E-05 35.5 4.6 46 93-138 300-345 (365)
10 2zzv_A ABC transporter, solute 84.9 1.3 4.6E-05 34.8 5.0 46 93-138 307-352 (361)
11 2p32_A Heat shock 70 kDa prote 84.4 8 0.00027 26.7 8.8 71 49-135 14-88 (120)
12 1o5h_A Formiminotetrahydrofola 83.9 0.59 2E-05 37.1 2.6 20 95-114 67-86 (214)
13 1ci6_A Transcription factor AT 82.9 3.4 0.00012 26.8 5.6 34 97-134 30-63 (63)
14 1deq_A Fibrinogen (alpha chain 82.9 2.2 7.5E-05 37.4 5.9 93 48-142 55-165 (390)
15 2dq0_A Seryl-tRNA synthetase; 81.3 1.1 3.8E-05 38.3 3.5 72 50-134 35-106 (455)
16 1wle_A Seryl-tRNA synthetase; 81.1 4.1 0.00014 35.6 7.0 80 50-134 74-153 (501)
17 3qfl_A MLA10; coiled-coil, (CC 80.7 3.7 0.00013 28.5 5.5 39 96-134 25-71 (115)
18 3qne_A Seryl-tRNA synthetase, 80.2 0.98 3.4E-05 39.6 2.9 72 50-134 37-108 (485)
19 1l8d_A DNA double-strand break 80.2 4 0.00014 27.6 5.4 43 97-143 10-52 (112)
20 1fxk_C Protein (prefoldin); ar 79.2 4.2 0.00014 28.4 5.4 35 98-132 96-130 (133)
21 1hjb_A Ccaat/enhancer binding 78.9 4.4 0.00015 28.4 5.4 58 56-134 19-76 (87)
22 4h8s_A DCC-interacting protein 78.7 4.2 0.00014 32.7 5.9 39 93-131 40-78 (407)
23 2v7s_A Probable conserved lipo 78.4 1.5 5.2E-05 35.7 3.3 27 47-73 55-81 (215)
24 1nlw_A MAD protein, MAX dimeri 78.1 2.6 9E-05 28.5 3.9 65 55-127 13-77 (80)
25 2dq3_A Seryl-tRNA synthetase; 78.0 1.3 4.4E-05 37.3 2.8 72 50-134 34-105 (425)
26 1l8d_A DNA double-strand break 75.3 6.5 0.00022 26.5 5.3 33 96-128 70-102 (112)
27 1joc_A EEA1, early endosomal a 74.7 7.4 0.00025 27.8 5.7 28 96-123 17-44 (125)
28 2xdj_A Uncharacterized protein 74.5 9.7 0.00033 26.3 6.1 39 97-135 27-65 (83)
29 2lfh_A DNA-binding protein inh 74.4 0.66 2.3E-05 31.8 0.1 37 35-72 4-43 (68)
30 4e8u_A Putative uncharacterize 74.2 1.5 5.1E-05 34.3 2.1 36 88-123 132-167 (172)
31 3twe_A Alpha4H; unknown functi 73.6 3 0.0001 24.5 2.8 18 97-114 8-25 (27)
32 1ud0_A HSC70, 70 kDa heat-shoc 71.4 13 0.00045 24.9 6.1 68 52-135 3-74 (113)
33 3gwk_C SAG1039, putative uncha 71.2 14 0.00048 23.6 5.9 42 93-140 7-48 (98)
34 2dgc_A Protein (GCN4); basic d 71.0 7.6 0.00026 25.3 4.6 33 96-132 29-61 (63)
35 3viq_B Mating-type switching p 70.9 3.8 0.00013 29.0 3.4 34 96-129 7-49 (85)
36 3oja_B Anopheles plasmodium-re 70.1 9.6 0.00033 31.3 6.1 37 98-134 538-574 (597)
37 2zqm_A Prefoldin beta subunit 69.6 14 0.00047 24.7 5.9 44 88-131 68-111 (117)
38 1gd2_E Transcription factor PA 69.6 7.7 0.00026 26.1 4.5 33 96-128 28-63 (70)
39 3uun_A Dystrophin; triple heli 69.2 19 0.00065 22.9 7.5 68 56-133 5-72 (119)
40 3uul_A Utrophin; spectrin repe 68.9 20 0.00068 22.9 7.9 67 56-132 5-71 (118)
41 3oja_A Leucine-rich immune mol 68.6 11 0.00036 30.7 6.0 33 97-129 442-474 (487)
42 3lss_A Seryl-tRNA synthetase; 68.1 5 0.00017 35.1 4.2 85 50-134 41-141 (484)
43 2i9o_A MHB8A peptide; beta-hai 67.8 2.3 8E-05 26.4 1.5 16 40-55 11-26 (37)
44 1dh3_A Transcription factor CR 66.8 10 0.00034 24.1 4.4 33 96-132 21-53 (55)
45 1gk6_A Vimentin; intermediate 66.6 17 0.0006 23.1 5.6 42 96-137 6-47 (59)
46 1hlo_A Protein (transcription 66.3 19 0.00065 23.6 5.9 19 55-73 24-42 (80)
47 1ci6_A Transcription factor AT 66.0 9.2 0.00031 24.7 4.2 25 96-124 36-60 (63)
48 1yx4_A 26S proteasome non-ATPa 65.1 4.4 0.00015 30.9 2.9 14 50-63 49-62 (132)
49 2wt7_A Proto-oncogene protein 65.0 19 0.00066 23.0 5.6 32 96-131 29-60 (63)
50 3zbh_A ESXA; unknown function, 64.8 16 0.00054 23.0 5.1 36 93-128 8-43 (99)
51 4ioe_A Secreted protein ESXB; 64.6 15 0.00052 23.0 5.0 41 93-139 8-48 (93)
52 3he5_A Synzip1; heterodimeric 64.0 21 0.00073 23.1 5.6 33 101-133 7-42 (49)
53 1uii_A Geminin; human, DNA rep 63.6 15 0.00052 26.0 5.2 31 97-131 46-76 (83)
54 3va9_A Sensor histidine kinase 63.6 14 0.00047 26.3 5.1 15 121-135 119-133 (164)
55 2lqh_B Forkhead box O3, FOXO3A 67.1 1.5 5.2E-05 28.9 0.0 19 34-52 17-38 (52)
56 1fxk_A Prefoldin; archaeal pro 62.8 15 0.00051 24.2 4.9 35 96-130 71-105 (107)
57 1jy2_O Fibrinogen beta chain; 62.4 9.9 0.00034 25.5 3.9 28 108-135 28-55 (56)
58 1gu4_A CAAT/enhancer binding p 62.3 12 0.00042 25.6 4.5 35 96-134 42-76 (78)
59 3a7p_A Autophagy protein 16; c 61.9 17 0.00059 28.1 5.7 35 96-130 74-108 (152)
60 2ve7_A Kinetochore protein HEC 61.3 6.1 0.00021 32.1 3.3 33 97-129 192-224 (315)
61 2q6q_A Spindle POLE BODY compo 61.0 26 0.00087 24.6 5.9 36 95-130 15-50 (74)
62 2zqm_A Prefoldin beta subunit 60.3 16 0.00054 24.4 4.7 37 97-133 70-106 (117)
63 3kyp_A Pfnaps, nucleosome asse 60.3 21 0.00072 27.2 6.0 40 96-135 9-49 (193)
64 3nmd_A CGMP dependent protein 59.5 22 0.00075 24.5 5.3 34 97-130 33-66 (72)
65 1wlq_A Geminin; coiled-coil; 2 59.4 18 0.00062 25.6 5.0 33 98-130 39-74 (83)
66 2lw1_A ABC transporter ATP-bin 59.2 25 0.00086 23.5 5.6 35 97-131 29-69 (89)
67 2xv5_A Lamin-A/C; structural p 59.2 25 0.00087 23.7 5.6 42 96-137 11-52 (74)
68 3fxb_A Trap dicarboxylate tran 58.3 16 0.00056 28.6 5.2 41 93-133 282-323 (326)
69 1sig_A Sigma70, RNA polymerase 57.8 23 0.00078 27.8 5.9 39 96-134 133-171 (339)
70 4b6x_A AVRRPS4, avirulence pro 57.8 11 0.00036 27.4 3.6 25 107-131 25-49 (90)
71 3vdj_A Circumsporozoite (CS) p 57.6 4.4 0.00015 28.3 1.6 25 116-143 7-31 (77)
72 1ik9_A DNA repair protein XRCC 56.6 21 0.00073 27.9 5.6 35 99-133 134-168 (213)
73 4etp_A Kinesin-like protein KA 56.5 19 0.00066 30.1 5.6 33 98-130 25-57 (403)
74 1t2k_D Cyclic-AMP-dependent tr 55.9 30 0.001 21.7 5.3 13 55-67 4-16 (61)
75 3aco_A Pacsin2, protein kinase 55.5 72 0.0025 24.9 8.4 58 50-120 158-216 (350)
76 1vp7_A Exodeoxyribonuclease VI 55.2 25 0.00084 25.3 5.2 77 34-127 7-84 (100)
77 2zdi_C Prefoldin subunit alpha 55.0 20 0.0007 25.6 4.8 35 99-133 107-141 (151)
78 3lof_A Heat shock 70 kDa prote 54.9 43 0.0015 22.5 6.2 42 93-134 33-78 (113)
79 1x8y_A Lamin A/C; structural p 54.6 33 0.0011 23.1 5.6 41 96-136 34-74 (86)
80 1am9_A Srebp-1A, protein (ster 54.0 18 0.00061 24.1 4.1 16 55-70 18-33 (82)
81 1uru_A Amphiphysin; endocytosi 53.8 36 0.0012 24.8 6.1 39 93-131 33-71 (244)
82 1u5p_A Spectrin alpha chain, b 53.6 40 0.0014 23.7 6.1 40 93-132 138-177 (216)
83 2zxx_A Geminin; coiled-coil, c 53.6 23 0.00078 24.7 4.7 30 98-131 42-71 (79)
84 2vs0_A Virulence factor ESXA; 53.2 38 0.0013 21.0 5.9 42 93-140 5-46 (97)
85 2vgl_A Adaptor protein complex 53.2 13 0.00043 31.8 4.0 37 61-114 9-45 (621)
86 4etp_A Kinesin-like protein KA 52.9 25 0.00086 29.4 5.7 35 95-129 8-42 (403)
87 4dzo_A Mitotic spindle assembl 52.8 28 0.00096 25.3 5.3 42 96-137 3-44 (123)
88 2yko_A LINE-1 ORF1P; RNA-bindi 52.6 28 0.00094 28.4 5.7 40 93-132 7-48 (233)
89 4fla_A Regulation of nuclear P 52.4 71 0.0024 23.9 9.2 45 62-114 41-85 (152)
90 1bgc_A Granulocyte colony-stim 52.3 11 0.00037 29.7 3.2 23 96-118 18-40 (174)
91 3u06_A Protein claret segregat 52.3 24 0.00084 29.8 5.6 33 96-128 9-41 (412)
92 4e81_A Chaperone protein DNAK; 52.1 42 0.0014 25.7 6.5 41 92-133 117-164 (219)
93 1uii_A Geminin; human, DNA rep 52.1 30 0.001 24.5 5.2 30 97-130 53-82 (83)
94 1cun_A Protein (alpha spectrin 51.8 47 0.0016 23.1 6.2 40 94-133 136-175 (213)
95 3na7_A HP0958; flagellar bioge 51.6 37 0.0012 26.2 6.1 32 97-128 32-63 (256)
96 3i00_A HIP-I, huntingtin-inter 51.5 49 0.0017 24.1 6.4 34 98-131 16-49 (120)
97 3ubw_A 14-3-3E, 14-3-3 protein 51.2 26 0.00088 28.7 5.4 18 58-75 76-93 (261)
98 2ieq_A S glycoprotein, spike g 51.0 19 0.00066 26.7 4.2 31 96-130 75-105 (109)
99 1a93_B MAX protein, coiled coi 50.7 16 0.00054 22.3 3.1 22 93-114 10-31 (34)
100 2yy0_A C-MYC-binding protein; 50.7 34 0.0012 21.7 4.8 33 95-127 17-49 (53)
101 4h22_A Leucine-rich repeat fli 50.2 46 0.0016 24.3 6.1 28 96-123 36-63 (103)
102 3rrk_A V-type ATPase 116 kDa s 50.1 81 0.0028 24.6 7.9 66 54-126 61-128 (357)
103 2ve7_A Kinetochore protein HEC 49.9 8.8 0.0003 31.2 2.4 24 95-118 183-206 (315)
104 1gk4_A Vimentin; intermediate 49.7 45 0.0015 22.2 5.6 41 96-136 32-72 (84)
105 1fxk_A Prefoldin; archaeal pro 48.8 14 0.00048 24.4 2.9 34 99-132 67-100 (107)
106 2zxx_A Geminin; coiled-coil, c 47.7 33 0.0011 23.9 4.8 14 96-109 47-60 (79)
107 2l5g_A GPS2 protein, G protein 47.5 16 0.00054 22.9 2.8 17 96-112 14-30 (38)
108 3rrk_A V-type ATPase 116 kDa s 47.3 42 0.0014 26.3 5.9 36 94-129 223-258 (357)
109 3a7o_A Autophagy protein 16; c 46.6 54 0.0019 23.0 5.7 30 100-129 28-57 (75)
110 1o7d_C Lysosomal alpha-mannosi 46.6 22 0.00075 25.1 3.8 32 37-68 13-45 (159)
111 2e50_A Protein SET; histone ch 46.3 44 0.0015 26.1 5.8 39 96-134 39-78 (225)
112 2wvr_A Geminin; DNA replicatio 45.9 45 0.0015 27.1 5.9 35 98-132 116-153 (209)
113 2fic_A Bridging integrator 1; 45.8 36 0.0012 25.3 5.0 37 96-132 51-87 (251)
114 2ocy_A RAB guanine nucleotide 45.7 40 0.0014 25.8 5.4 37 96-132 107-143 (154)
115 1wh4_A IRAK4, interleukin-1 re 45.4 31 0.0011 25.0 4.6 38 93-130 54-98 (127)
116 2l3i_A Aoxki4A, antimicrobial 45.0 12 0.00042 22.2 1.9 15 115-129 13-27 (30)
117 3lay_A Zinc resistance-associa 44.9 52 0.0018 25.1 5.9 42 93-134 70-122 (175)
118 3efz_A 14-3-3 protein; 14-3-3, 44.9 28 0.00095 28.7 4.7 59 57-125 70-129 (268)
119 2npm_A 14-3-3 domain containin 44.9 37 0.0013 27.6 5.4 19 57-75 75-93 (260)
120 4avm_A Bridging integrator 2; 44.8 54 0.0019 25.0 6.1 38 94-131 30-67 (237)
121 2efk_A CDC42-interacting prote 44.8 73 0.0025 23.7 6.7 51 50-113 131-181 (301)
122 3ghg_A Fibrinogen alpha chain; 44.7 32 0.0011 31.5 5.4 85 48-134 52-147 (562)
123 2pfz_A Putative exported prote 44.6 33 0.0011 26.1 4.8 37 93-129 263-300 (301)
124 4b9q_A Chaperone protein DNAK; 44.2 48 0.0017 28.4 6.2 41 92-133 505-552 (605)
125 3mov_A Lamin-B1; LMNB1, B-type 44.1 57 0.002 22.7 5.6 40 97-136 44-83 (95)
126 2i7u_A Four-alpha-helix bundle 43.8 5.7 0.00019 26.9 0.3 11 41-51 27-37 (62)
127 1deb_A APC protein, adenomatou 43.6 36 0.0012 22.6 4.2 26 98-123 11-36 (54)
128 3aon_A V-type sodium ATPase su 43.2 1.1E+02 0.0038 23.5 8.6 23 43-65 128-150 (217)
129 2vpn_A Periplasmic substrate b 43.2 28 0.00095 26.8 4.2 41 93-133 268-309 (316)
130 1u4q_A Spectrin alpha chain, b 43.0 65 0.0022 23.8 6.1 41 93-133 244-284 (322)
131 3edv_A Spectrin beta chain, br 43.0 69 0.0023 23.9 6.2 41 93-133 248-288 (323)
132 3ghg_C Fibrinogen gamma chain; 42.8 58 0.002 28.3 6.5 43 96-142 90-140 (411)
133 2a9i_A IRAK-4, interleukin-1 r 42.7 31 0.0011 24.5 4.1 39 92-130 46-91 (113)
134 1s35_A Beta-I spectrin, spectr 42.6 81 0.0028 22.1 6.3 41 93-133 29-69 (214)
135 3efg_A Protein SLYX homolog; x 42.4 32 0.0011 23.2 4.0 17 97-113 14-30 (78)
136 1o9d_A 14-3-3-like protein C; 42.4 43 0.0015 27.2 5.4 19 57-75 54-72 (260)
137 2z5i_A TM, general control pro 42.2 63 0.0022 20.4 5.5 37 98-134 13-49 (52)
138 2dnx_A Syntaxin-12; snare, HAB 42.0 36 0.0012 24.2 4.4 34 108-141 48-81 (130)
139 3tso_C RAB11 family-interactin 41.9 62 0.0021 22.6 5.4 34 101-134 18-51 (75)
140 4f7g_B Talin-1; alpha-helix bu 41.4 64 0.0022 25.7 6.2 64 43-121 22-86 (216)
141 1cn3_F Fragment of coat protei 41.4 10 0.00035 22.5 1.1 8 43-50 2-9 (29)
142 3zrx_A AF1503 protein, osmolar 41.3 55 0.0019 19.4 5.3 39 95-133 35-77 (115)
143 1u00_A HSC66, chaperone protei 40.9 79 0.0027 23.9 6.4 40 93-133 115-161 (227)
144 1t2k_D Cyclic-AMP-dependent tr 40.8 65 0.0022 20.1 5.7 13 98-110 23-35 (61)
145 2br9_A 14-3-3E, 14-3-3 protein 40.4 30 0.001 27.5 4.1 19 57-75 49-67 (234)
146 3ilw_A DNA gyrase subunit A; D 40.4 43 0.0015 29.6 5.4 39 93-131 412-457 (470)
147 3b1f_A Putative prephenate deh 40.3 54 0.0019 24.2 5.3 35 96-130 250-285 (290)
148 3hnw_A Uncharacterized protein 40.0 80 0.0027 23.1 6.1 20 98-117 83-102 (138)
149 2jn6_A Protein CGL2762, transp 39.9 3.1 0.00011 26.8 -1.4 61 48-114 23-83 (97)
150 2pfy_A Putative exported prote 39.4 38 0.0013 25.7 4.4 36 93-128 264-300 (301)
151 3uzd_A 14-3-3 protein gamma; s 39.0 32 0.0011 27.8 4.1 21 57-77 48-68 (248)
152 3rki_A Fusion glycoprotein F0; 38.5 66 0.0022 29.3 6.4 76 51-134 79-183 (528)
153 2v7q_J ATPase inhibitor; ION t 38.1 27 0.00091 23.9 3.0 13 56-68 36-48 (66)
154 1fxk_C Protein (prefoldin); ar 37.8 81 0.0028 21.7 5.6 40 95-134 86-125 (133)
155 3fb2_A Spectrin alpha chain, b 37.6 80 0.0027 22.6 5.7 41 93-133 42-82 (218)
156 3iyk_A VP5; icosahedral virus; 37.4 22 0.00075 32.3 3.2 39 93-131 160-198 (526)
157 3cvf_A Homer-3, homer protein 37.4 1E+02 0.0034 21.3 5.9 34 101-134 24-64 (79)
158 2dfs_A Myosin-5A; myosin-V, in 37.4 58 0.002 30.8 6.1 12 104-115 991-1002(1080)
159 3vmx_A Voltage-gated hydrogen 37.1 47 0.0016 21.5 3.9 25 98-122 19-43 (48)
160 2y39_A Nickel and cobalt resis 36.7 98 0.0034 22.8 6.1 57 50-113 28-86 (118)
161 4a3a_A Amphiphysin; structural 36.6 77 0.0026 24.5 5.8 39 94-132 35-73 (243)
162 1hjb_A Ccaat/enhancer binding 36.5 41 0.0014 23.4 3.9 15 115-129 50-64 (87)
163 4dzn_A Coiled-coil peptide CC- 36.5 66 0.0022 19.4 4.2 18 98-115 3-20 (33)
164 3tut_A RNA 3'-terminal phospha 36.3 18 0.00061 30.7 2.3 20 41-64 28-47 (358)
165 2pv7_A T-protein [includes: ch 35.9 96 0.0033 23.6 6.2 32 98-129 240-272 (298)
166 1jnm_A Proto-oncogene C-JUN; B 35.9 81 0.0028 19.8 5.2 12 55-66 4-15 (62)
167 2kho_A Heat shock protein 70; 35.8 84 0.0029 26.9 6.4 41 92-133 505-552 (605)
168 2qyw_A Vesicle transport throu 35.8 1.1E+02 0.0036 21.1 7.0 25 51-75 17-41 (102)
169 3bpj_A Eukaryotic translation 35.7 65 0.0022 21.6 4.7 49 87-135 4-52 (80)
170 4e61_A Protein BIM1; EB1-like 35.7 91 0.0031 22.7 5.7 17 114-130 45-61 (106)
171 2wps_A Trimeric autotransporte 35.6 89 0.0031 23.1 5.7 36 97-132 65-100 (107)
172 3kqg_A Langerin, C-type lectin 35.4 66 0.0023 22.2 4.8 30 93-122 12-41 (182)
173 2ybf_B E3 ubiquitin-protein li 35.3 9 0.00031 22.5 0.2 12 51-62 15-26 (27)
174 1qoy_A Hemolysin E; toxin, mem 35.2 26 0.00088 30.0 3.1 18 52-69 22-39 (318)
175 4emc_A Monopolin complex subun 35.1 86 0.0029 25.0 5.9 30 99-128 22-51 (190)
176 1i1r_B Viral IL-6; cytokine/re 35.1 34 0.0012 26.7 3.5 24 95-118 12-35 (181)
177 2inr_A DNA topoisomerase 4 sub 34.9 59 0.002 29.0 5.4 38 94-131 451-495 (514)
178 2l5g_B Putative uncharacterize 34.5 40 0.0014 21.3 3.2 17 97-113 16-32 (42)
179 2wt7_A Proto-oncogene protein 34.4 88 0.003 19.8 5.7 34 96-133 22-55 (63)
180 3bny_A Aristolochene synthase; 34.4 73 0.0025 24.1 5.3 41 99-139 267-310 (320)
181 2nov_A DNA topoisomerase 4 sub 33.8 59 0.002 28.8 5.3 39 94-132 427-472 (496)
182 1m1j_A Fibrinogen alpha subuni 33.6 49 0.0017 29.8 4.7 73 48-122 53-125 (491)
183 2x3v_A Syndapin I, protein kin 33.5 1.6E+02 0.0055 22.6 8.2 27 94-120 180-207 (337)
184 3gfs_A FMN-dependent NADPH-azo 32.9 1.1E+02 0.0038 21.0 5.7 26 93-118 147-172 (174)
185 3kbt_A Beta-I spectrin, spectr 32.8 1.2E+02 0.004 22.6 6.1 40 93-132 33-72 (326)
186 4emc_A Monopolin complex subun 32.8 92 0.0031 24.8 5.8 20 96-115 40-59 (190)
187 1wlq_A Geminin; coiled-coil; 2 32.7 56 0.0019 23.1 4.0 15 113-127 67-81 (83)
188 3cve_A Homer protein homolog 1 32.6 1.2E+02 0.004 20.7 5.9 33 102-134 19-58 (72)
189 3bas_A Myosin heavy chain, str 32.4 1.1E+02 0.0039 20.5 6.1 36 95-130 12-47 (89)
190 1zme_C Proline utilization tra 32.4 40 0.0014 20.4 2.9 19 95-113 42-60 (70)
191 1s35_A Beta-I spectrin, spectr 32.2 1.3E+02 0.0044 21.0 6.4 41 93-133 136-176 (214)
192 2vgq_A Maltose-binding peripla 32.0 1.1E+02 0.0039 24.3 6.2 41 92-132 419-465 (477)
193 3haj_A Human pacsin2 F-BAR; pa 32.0 1.3E+02 0.0046 24.9 6.9 21 94-114 182-202 (486)
194 1a93_A Coiled coil, LZ, MYC pr 32.0 53 0.0018 19.8 3.3 26 103-128 9-34 (34)
195 1nkp_B MAX protein, MYC proto- 31.9 45 0.0015 21.7 3.3 17 97-113 54-70 (83)
196 5mdh_A Malate dehydrogenase; o 31.7 63 0.0022 26.0 4.7 29 93-121 303-331 (333)
197 3tnu_A Keratin, type I cytoske 31.6 83 0.0029 22.2 4.9 31 96-126 83-113 (131)
198 1zvu_A Topoisomerase IV subuni 31.6 68 0.0023 29.8 5.4 38 95-132 400-444 (716)
199 3b1f_A Putative prephenate deh 31.5 90 0.0031 23.0 5.2 22 93-114 269-290 (290)
200 2o8p_A 14-3-3 domain containin 31.4 84 0.0029 25.2 5.4 19 57-75 54-72 (227)
201 3tnu_B Keratin, type II cytosk 31.4 85 0.0029 22.1 4.9 31 96-126 81-111 (129)
202 1alu_A Interleukin-6; cytokine 31.2 42 0.0015 26.2 3.5 23 96-118 28-50 (186)
203 3nep_X Malate dehydrogenase; h 31.2 61 0.0021 25.9 4.6 24 93-116 281-304 (314)
204 2js5_A Uncharacterized protein 30.9 73 0.0025 21.9 4.3 27 108-134 7-33 (71)
205 3u06_A Protein claret segregat 30.6 91 0.0031 26.3 5.7 35 97-131 24-58 (412)
206 3iyd_F RNA polymerase sigma fa 30.4 33 0.0011 29.7 3.1 42 94-135 240-281 (613)
207 1zxa_A CGMP-dependent protein 30.3 1.2E+02 0.004 20.4 5.2 39 93-131 14-55 (67)
208 2wg5_A General control protein 30.3 60 0.0021 22.6 3.9 19 100-118 10-28 (109)
209 3hhp_A Malate dehydrogenase; M 30.1 53 0.0018 26.3 4.0 28 93-120 283-310 (312)
210 4ati_A MITF, microphthalmia-as 29.8 16 0.00055 26.1 0.9 55 59-128 43-111 (118)
211 2o5g_B CAM, smooth muscle myos 29.8 39 0.0013 19.6 2.3 15 54-68 2-16 (26)
212 3kb9_A EPI-isozizaene synthase 29.7 1E+02 0.0034 24.8 5.6 41 99-139 301-355 (382)
213 3ilw_A DNA gyrase subunit A; D 29.7 69 0.0024 28.3 5.0 22 112-133 420-441 (470)
214 3nmd_A CGMP dependent protein 29.6 48 0.0016 22.8 3.2 36 99-134 21-56 (72)
215 2f1k_A Prephenate dehydrogenas 29.4 85 0.0029 22.9 4.8 37 96-132 238-275 (279)
216 1t0c_A Insulin; type I beta-tu 29.3 17 0.00057 21.8 0.7 13 40-52 10-22 (31)
217 3iqu_A 14-3-3 protein sigma; s 29.2 28 0.00095 28.0 2.2 21 57-77 52-72 (236)
218 1u4q_A Spectrin alpha chain, b 29.1 1.5E+02 0.0052 21.8 6.1 40 93-132 138-177 (322)
219 1woz_A 177AA long conserved hy 29.1 78 0.0027 24.1 4.6 22 93-114 76-97 (177)
220 2pv7_A T-protein [includes: ch 29.0 88 0.003 23.8 4.9 17 95-111 259-275 (298)
221 2xcs_B DNA gyrase subunit B, D 28.8 81 0.0028 29.2 5.4 38 94-131 634-678 (692)
222 2q12_A DIP13 alpha, DCC-intera 28.7 1.3E+02 0.0045 22.5 5.8 39 93-131 17-55 (265)
223 1di1_A Aristolochene synthase; 28.2 93 0.0032 23.1 4.9 41 98-138 252-296 (300)
224 3csx_A Putative uncharacterize 28.2 42 0.0014 23.6 2.7 26 109-134 20-45 (81)
225 4dk0_A Putative MACA; alpha-ha 28.1 1.5E+02 0.0052 22.6 6.1 36 94-129 112-147 (369)
226 3v1v_A 2-MIB synthase, 2-methy 27.9 95 0.0032 26.2 5.4 42 98-139 378-421 (433)
227 2l2l_B Methyl-CPG-binding doma 27.9 73 0.0025 19.5 3.5 22 94-115 7-28 (36)
228 2v6x_A Vacuolar protein sortin 27.9 1.3E+02 0.0043 19.5 6.0 22 49-70 27-48 (85)
229 3e35_A Uncharacterized protein 27.8 87 0.003 25.9 5.0 32 98-129 235-270 (325)
230 3mud_A DNA repair protein XRCC 27.8 95 0.0033 24.3 5.0 35 99-133 137-171 (175)
231 2wvr_A Geminin; DNA replicatio 27.7 1E+02 0.0034 25.1 5.3 16 97-112 122-137 (209)
232 3tq7_B Microtubule-associated 27.7 57 0.0019 22.6 3.3 29 96-124 7-38 (82)
233 2hn1_A CORA, magnesium and cob 27.6 1.1E+02 0.0039 22.7 5.3 25 99-123 214-238 (266)
234 2g5c_A Prephenate dehydrogenas 27.6 1.2E+02 0.0041 22.2 5.3 34 96-129 242-276 (281)
235 1gmj_A ATPase inhibitor; coile 27.4 67 0.0023 22.7 3.7 26 97-122 51-76 (84)
236 3trt_A Vimentin; cytoskeleton, 27.4 49 0.0017 21.1 2.8 28 48-75 8-35 (77)
237 3qh9_A Liprin-beta-2; coiled-c 27.4 1.3E+02 0.0046 21.1 5.3 24 104-127 54-77 (81)
238 2l3y_A Interleukin-6; cytokine 27.3 35 0.0012 26.9 2.4 25 95-119 30-54 (190)
239 1lwu_C Fibrinogen gamma chain; 27.3 73 0.0025 26.5 4.5 9 97-105 12-20 (323)
240 3mtu_E Head morphogenesis prot 27.3 1.4E+02 0.0049 20.7 5.3 27 96-126 43-69 (77)
241 3lpx_A GYRA, DNA gyrase, A sub 27.1 95 0.0033 27.8 5.4 34 98-131 440-480 (500)
242 4akk_A Nitrate regulatory prot 27.1 81 0.0028 26.0 4.7 75 46-135 90-174 (423)
243 3itf_A Periplasmic adaptor pro 27.0 90 0.0031 23.1 4.5 58 51-116 47-107 (145)
244 1xaw_A Occludin; coiled-coil, 26.8 1.7E+02 0.0058 22.1 6.1 23 52-74 44-73 (140)
245 3ggo_A Prephenate dehydrogenas 26.7 1.1E+02 0.0038 23.8 5.2 33 97-129 275-308 (314)
246 2f1k_A Prephenate dehydrogenas 26.6 1.3E+02 0.0044 22.0 5.3 21 105-125 222-242 (279)
247 1mld_A Malate dehydrogenase; o 26.6 71 0.0024 25.1 4.1 29 91-119 281-309 (314)
248 3mq9_A Bone marrow stromal ant 26.5 1.3E+02 0.0044 24.2 5.7 60 51-123 406-469 (471)
249 1w63_A Adapter-related protein 26.4 80 0.0027 26.5 4.6 38 64-118 11-48 (618)
250 2zvf_A Alanyl-tRNA synthetase; 26.3 1.2E+02 0.0042 21.2 5.0 20 98-117 33-52 (171)
251 3a2a_A Voltage-gated hydrogen 26.1 1E+02 0.0035 20.7 4.2 24 98-121 26-49 (58)
252 2xcs_B DNA gyrase subunit B, D 25.5 86 0.0029 29.0 5.0 16 60-75 587-602 (692)
253 1fzc_C Fibrin; blood coagulati 25.5 14 0.0005 30.7 -0.0 31 96-130 17-47 (319)
254 1hul_A Interleukin-5; cytokine 25.5 1.1E+02 0.0039 22.6 4.8 39 98-136 60-105 (108)
255 2v4h_A NF-kappa-B essential mo 25.4 1.5E+02 0.005 21.9 5.4 44 93-136 20-66 (110)
256 2fic_A Bridging integrator 1; 25.3 1.2E+02 0.0041 22.4 5.0 36 95-130 177-212 (251)
257 2er8_A Regulatory protein Leu3 25.3 67 0.0023 19.6 3.1 21 95-115 47-67 (72)
258 3pbf_A Pulmonary surfactant-as 25.2 70 0.0024 21.2 3.4 19 96-114 8-26 (148)
259 2q13_A DCC-interacting protein 25.2 1.5E+02 0.0051 23.4 5.8 38 93-130 17-54 (385)
260 2d9d_A BAG family molecular ch 25.2 1.2E+02 0.0041 21.8 4.7 22 96-117 9-30 (89)
261 4avm_A Bridging integrator 2; 25.0 1.7E+02 0.0059 22.2 6.0 39 93-131 156-194 (237)
262 1ses_A Seryl-tRNA synthetase; 24.9 82 0.0028 26.4 4.4 36 96-131 41-77 (421)
263 3mud_A DNA repair protein XRCC 24.9 1.8E+02 0.0062 22.7 6.1 12 96-107 141-152 (175)
264 2jee_A YIIU; FTSZ, septum, coi 24.7 1.6E+02 0.0056 20.4 5.3 25 102-126 53-77 (81)
265 2zd7_A VPS75, vacuolar protein 24.7 1.6E+02 0.0053 23.4 5.8 38 97-134 16-54 (264)
266 1use_A VAsp, vasodilator-stimu 24.6 1.4E+02 0.0048 19.0 5.9 37 93-132 3-40 (45)
267 2e7s_A RAB guanine nucleotide 24.4 22 0.00076 26.9 0.8 35 96-130 95-129 (135)
268 3gaa_A Uncharacterized protein 24.2 2.2E+02 0.0074 22.0 6.5 22 101-122 218-239 (252)
269 1quu_A Human skeletal muscle a 24.1 2.1E+02 0.0072 20.8 8.9 71 51-132 127-200 (250)
270 3i00_A HIP-I, huntingtin-inter 24.1 2.1E+02 0.0071 20.7 6.3 48 52-118 14-61 (120)
271 3viq_B Mating-type switching p 23.9 41 0.0014 23.7 2.0 24 100-123 4-27 (85)
272 3ggz_E Vacuolar protein-sortin 23.9 50 0.0017 19.5 2.1 18 93-110 11-28 (29)
273 2yf2_A C4B binding protein; im 23.9 59 0.002 22.1 2.8 16 98-113 42-57 (65)
274 1m1j_B Fibrinogen beta chain; 23.8 1.4E+02 0.0046 26.3 5.7 71 52-124 88-162 (464)
275 1lwu_C Fibrinogen gamma chain; 23.7 2E+02 0.0068 23.9 6.5 18 97-114 26-43 (323)
276 1wle_A Seryl-tRNA synthetase; 23.7 1.6E+02 0.0054 25.6 6.1 20 96-115 83-102 (501)
277 4fm3_A Uncharacterized hypothe 23.4 66 0.0022 23.0 3.1 19 48-66 28-46 (98)
278 1deq_A Fibrinogen (alpha chain 23.2 1.1E+02 0.0039 26.7 5.1 37 98-134 68-104 (390)
279 3d2f_A Heat shock protein homo 23.1 3.5E+02 0.012 23.7 8.2 42 93-134 574-620 (675)
280 3fx7_A Putative uncharacterize 23.0 2E+02 0.0069 20.4 5.6 17 57-73 24-40 (94)
281 1bb1_B Designed, thermostable 22.9 1.4E+02 0.0047 18.3 4.0 26 98-127 10-35 (36)
282 1ng6_A Hypothetical protein YQ 22.9 1.1E+02 0.0036 22.2 4.2 48 56-113 17-64 (148)
283 2wg5_A General control protein 22.8 78 0.0027 22.0 3.4 19 96-114 13-31 (109)
284 1quu_A Human skeletal muscle a 22.8 2.2E+02 0.0077 20.7 7.3 72 51-132 12-83 (250)
285 3d2f_A Heat shock protein homo 22.7 1.8E+02 0.006 25.6 6.2 41 93-133 523-569 (675)
286 3fav_B ESAT-6, 6 kDa early sec 22.7 1.5E+02 0.005 18.5 4.6 37 101-140 9-45 (94)
287 2x0j_A Malate dehydrogenase; o 22.6 74 0.0025 25.4 3.6 23 93-115 269-291 (294)
288 3iz6_M 40S ribosomal protein S 22.6 1.5E+02 0.0053 22.3 5.2 18 90-107 55-72 (152)
289 1got_G GT-gamma; complex (GTP- 22.5 48 0.0016 22.3 2.1 39 93-131 13-51 (73)
290 2vqe_M 30S ribosomal protein S 22.5 98 0.0034 22.7 4.0 17 91-107 45-61 (126)
291 4hur_A Virginiamycin A acetylt 22.4 91 0.0031 22.8 3.8 22 93-114 173-200 (220)
292 3a5i_A Flagellar biosynthesis 22.4 21 0.00073 30.4 0.4 15 101-115 79-93 (389)
293 3mv2_A Coatomer subunit alpha; 22.3 1.2E+02 0.0041 25.5 5.0 47 58-117 130-180 (325)
294 1yzm_A FYVE-finger-containing 22.3 86 0.0029 20.2 3.2 22 96-117 27-48 (51)
295 2j69_A Bacterial dynamin-like 22.3 2E+02 0.0068 25.2 6.5 39 96-134 365-411 (695)
296 3hnw_A Uncharacterized protein 22.2 2E+02 0.0067 21.0 5.6 6 67-72 59-64 (138)
297 4dnd_A Syntaxin-10, SYN10; str 22.0 1.2E+02 0.004 22.0 4.3 14 98-111 75-88 (130)
298 2zxy_A Cytochrome C552, cytoch 22.0 83 0.0028 18.5 3.0 52 48-105 24-82 (87)
299 2f1m_A Acriflavine resistance 22.0 2.4E+02 0.0081 20.7 7.6 35 93-127 94-128 (277)
300 4abx_A DNA repair protein RECN 22.0 2.3E+02 0.0078 20.4 6.5 34 93-126 118-151 (175)
301 2p2u_A HOST-nuclease inhibitor 21.9 2.2E+02 0.0074 21.2 5.8 32 96-127 40-71 (171)
302 2c9l_Y EB1, zebra, BZLF1 trans 21.8 1.9E+02 0.0065 19.5 7.4 16 114-129 35-50 (63)
303 3v1a_A Computational design, M 21.8 90 0.0031 19.9 3.2 20 96-115 26-45 (48)
304 1ps1_A Pentalenene synthase; a 21.6 2E+02 0.0068 21.8 5.7 25 117-141 287-312 (337)
305 2nov_A DNA topoisomerase 4 sub 21.6 1.2E+02 0.0041 26.9 5.0 16 61-76 381-396 (496)
306 1z0k_B FYVE-finger-containing 21.6 84 0.0029 21.4 3.2 22 96-117 45-66 (69)
307 3bas_A Myosin heavy chain, str 21.6 1.9E+02 0.0065 19.4 6.1 29 96-124 20-51 (89)
308 1y7t_A Malate dehydrogenase; N 21.5 88 0.003 24.0 3.7 23 93-115 298-320 (327)
309 2eqb_B RAB guanine nucleotide 21.5 1.4E+02 0.0047 21.4 4.5 28 99-126 7-34 (97)
310 1ukx_A GCN2, GCN2 EIF2alpha ki 21.5 78 0.0027 21.4 3.1 45 94-141 90-134 (137)
311 3n8e_A Stress-70 protein, mito 21.5 1.8E+02 0.0062 21.7 5.3 20 92-111 136-155 (182)
312 3kpe_A Fusion glycoprotein F0; 21.4 1.4E+02 0.0049 19.2 4.1 31 101-131 1-31 (51)
313 2efr_A General control protein 21.4 91 0.0031 23.6 3.7 42 99-140 100-141 (155)
314 4dzo_A Mitotic spindle assembl 21.4 1.9E+02 0.0065 20.8 5.3 32 96-127 10-41 (123)
315 2zdi_C Prefoldin subunit alpha 21.3 1.9E+02 0.0066 20.4 5.3 38 95-132 96-133 (151)
316 1fio_A SSO1 protein; four heli 21.3 1.6E+02 0.0056 20.9 4.9 28 101-128 46-73 (196)
317 3gon_A Phosphomevalonate kinas 21.2 2.2E+02 0.0076 21.0 5.7 40 95-134 225-265 (335)
318 3qwe_A GMIP, GEM-interacting p 21.2 1.8E+02 0.0062 23.7 5.7 27 105-134 199-225 (279)
319 3l39_A Putative PHOU-like phos 21.1 2.1E+02 0.0071 21.4 5.7 21 95-115 61-81 (227)
320 2xze_Q Charged multivesicular 21.0 57 0.0019 20.3 2.1 15 96-110 25-39 (40)
321 2ov9_A Hypothetical protein; r 20.9 82 0.0028 23.8 3.4 19 57-75 26-44 (216)
322 3fkm_X Signaling protein; brom 20.9 45 0.0015 24.5 1.8 36 43-82 8-43 (166)
323 4dvy_P Cytotoxicity-associated 20.8 1E+02 0.0035 29.3 4.5 30 103-132 63-100 (876)
324 3p7m_A Malate dehydrogenase; p 20.7 1.2E+02 0.004 24.2 4.4 23 93-115 292-314 (321)
325 2z0v_A SH3-containing GRB2-lik 20.7 1.8E+02 0.0061 21.9 5.2 21 94-114 162-182 (240)
326 3q8g_A CRAL-TRIO domain-contai 20.7 64 0.0022 25.5 2.8 23 48-73 32-54 (320)
327 3hwk_A Methylcitrate synthase; 20.5 21 0.00072 30.6 0.0 23 35-62 4-30 (414)
328 3abh_A Pacsin2, protein kinase 20.5 67 0.0023 24.4 2.8 17 50-66 158-174 (312)
329 2xkj_E Topoisomerase IV; type 20.1 1.6E+02 0.0053 27.6 5.6 35 98-132 697-738 (767)
330 2rjz_A PILO protein; structura 20.1 1.5E+02 0.0051 21.4 4.5 31 97-128 22-52 (147)
331 4ew8_A Sensor protein DIVL; si 20.0 78 0.0027 22.2 2.9 25 96-120 16-40 (268)
No 1
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=93.59 E-value=0.11 Score=40.31 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-.||++||+.-..+++.|..|+.+|+.||.|...+
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999997643
No 2
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=93.01 E-value=0.4 Score=34.17 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032332 55 RHRYKTSVAALRAVL 69 (143)
Q Consensus 55 R~RYK~AvAALRa~i 69 (143)
|.+=|..+++||.-+
T Consensus 35 rqkekEqL~~LKkkl 49 (84)
T 1gmj_A 35 RARAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444456667777665
No 3
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=90.23 E-value=1.3 Score=34.16 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
++-|..|+..+.+||.-+.+.-.. ..+ .+... +.|++.|++|.++...||.++......
T Consensus 77 ~~I~~e~r~~~~~Lr~ql~akr~E--L~a-L~~a~------~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQLISKRYE--YNA-LLTAS------SPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHTSS------SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHhCC------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777665543211 111 11333 789999999999999999999875543
No 4
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=88.24 E-value=1.2 Score=32.59 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
.+.|.+||+.--...+|+..+=+--+.|+.+++++|.+|+
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~ 130 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 130 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999986
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.08 E-value=2.1 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 55 RHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVE--------IDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaE--------IekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
|.+.+.+...||..|-.+++ . +.+.++ |..|+++...|..|+..-......|-.+
T Consensus 14 R~~in~~f~~Lr~lvP~~~~-----------~------k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVPSLQG-----------E------KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHTTSGGGTT-----------S------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCC-----------C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889887654432 1 344444 6777777777776665544444444444
Q ss_pred HH
Q 032332 127 LR 128 (143)
Q Consensus 127 lr 128 (143)
|.
T Consensus 77 l~ 78 (83)
T 1nkp_B 77 VR 78 (83)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=87.28 E-value=1.4 Score=33.17 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
.+.|.+||+.--...+|+..+=+--+.|+.+++++|.+|+-
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999973
No 7
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=86.28 E-value=3.5 Score=34.73 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+.|..-+..+..||+-..++++. +-. .+..+.+.|-+++..|+++|......++.+-++|.+
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~-------i~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKR-------VPK--------APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SSS--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh--------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888999999999988876 111 223578889999999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 97 ~~~~i 101 (421)
T 1ses_A 97 LLLQV 101 (421)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 77544
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=85.90 E-value=0.76 Score=31.54 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHH
Q 032332 55 RHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKE---LANKNKYLKRLIDQLR 128 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkE---i~~KN~~lK~LIdqlr 128 (143)
|...+.....||..|-.++.+.|+.-..+.... -+-|..|+++...|..+ +..+|..|+.=|.+|+
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A--------~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKA--------TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344578889999988777766555444432221 23578888887777665 4455555555555543
No 9
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=85.65 E-value=1 Score=35.51 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
..+.+|++.+.+.+..+++++..++..-+.+++++++.+.+..-|.
T Consensus 300 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 345 (365)
T 2hzl_A 300 PFSPEILQACFEAANEVYAEMEASNPAFKKIWDSIKAFRSEHYTWA 345 (365)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhHHH
Confidence 4567889999999999999999888888999999999999998886
No 10
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=84.86 E-value=1.3 Score=34.84 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wq 138 (143)
..+++|.+++.+.+..+++++..++..-+.+++++++++.+.--|.
T Consensus 307 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (361)
T 2zzv_A 307 RLSNEDVRKFRRLAIPIWFKWAKMDKYSREAFASQLEYMKGIGYVT 352 (361)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTCSC
T ss_pred ECCHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHcCccc
Confidence 5667899999999999999998888889999999999999998886
No 11
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=84.44 E-value=8 Score=26.69 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh----hHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANK----NKYLKRLI 124 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K----N~~lK~LI 124 (143)
-.+-|||-.-..-+-.+|..|.- . -... +.+++|.+++++....||+-|... -..++..+
T Consensus 14 re~iEarN~aEsliy~~e~~L~e---~-------~~~d------kl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~ 77 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIED---E-------KLKD------KISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQ 77 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTC---T-------TTGG------GSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---h-------hhhc------cCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 34678888887777778776631 0 0122 678899999999999999888643 24577778
Q ss_pred HHHHHHHhhhc
Q 032332 125 DQLRDLITDIS 135 (143)
Q Consensus 125 dqlrdlI~DiS 135 (143)
+.|..++..|.
T Consensus 78 ~eL~~~~~~i~ 88 (120)
T 2p32_A 78 KDLEGLANPII 88 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776664
No 12
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=83.89 E-value=0.59 Score=37.10 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~ 114 (143)
-+++++++-+++..||++|-
T Consensus 67 ~e~~~~~i~~~~~~l~~~ll 86 (214)
T 1o5h_A 67 VEPEMERIVEAMEEARLKLF 86 (214)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998888864
No 13
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.92 E-value=3.4 Score=26.80 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.+++.|+++-..|+.+|. .|+.=+.+|++||.++
T Consensus 30 ~~~~~L~~~N~~L~~~i~----~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 30 GECKELEKKNEALKERAD----SLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhC
Confidence 455555555555555553 3344455666666653
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.88 E-value=2.2 Score=37.40 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCH-----------HHHHHHHHHHHHHHHHHHhh
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDE-----------VEIDKLEERASLLRKELANK 116 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~Dq-----------aEIekLEe~As~LRkEi~~K 116 (143)
-|.||++...+++.|.-||-.|.-+...++-.-.-+ -. +..+-+-++ ..-+.||+|...|++.|..+
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~-~~-~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLT-KN-IVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH-HH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999877654322211 00 000012223 33456667777776666666
Q ss_pred hHHHHHHHHHHHHHHh-------hhccccCCCC
Q 032332 117 NKYLKRLIDQLRDLIT-------DISTWQSPCS 142 (143)
Q Consensus 117 N~~lK~LIdqlrdlI~-------DiS~Wqspcs 142 (143)
=..++.|=..||++.. ||-.=..||.
T Consensus 133 ~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~ 165 (390)
T 1deq_A 133 VQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCK 165 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555555443 4444455664
No 15
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=81.35 E-value=1.1 Score=38.25 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+.|..-+..+..||+-..+|+..-+.... . . .+++.|-+++..|+++|......++.+-++|.+
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~----~------~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRK----K------G---EPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----S------C---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----c------c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888889999999999988876221100 1 1 235678889999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 102 ~~~~i 106 (455)
T 2dq0_A 102 YLWRL 106 (455)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 87654
No 16
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.12 E-value=4.1 Score=35.56 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+.|...+..+..||+-..+|+..-+......... +....++++.|-+++..|+++|......++.+-++|.+
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~-----~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNS-----QVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-----TGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888889999998888876632211110001 00111578899999999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 149 ~l~~i 153 (501)
T 1wle_A 149 RALRL 153 (501)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 87654
No 17
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=80.72 E-value=3.7 Score=28.49 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKEL--------ANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi--------~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.||++|+.....++--| ..++..+|..+.|+||+.-||
T Consensus 25 ~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ 71 (115)
T 3qfl_A 25 KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVI 71 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 457777777766655433 225788999999999997765
No 18
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=80.20 E-value=0.98 Score=39.61 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+.|..-+..+..||+-..+++..-.... . . . .+++.|-+++..|+++|......++.+-++|.+
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k---~-~------~---~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRF---K-A------K---EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-T------T---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-C------c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888999999999988876521100 0 0 1 134678888999999999999999999999988
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 104 ~l~~i 108 (485)
T 3qne_A 104 KINQV 108 (485)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 87654
No 19
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.17 E-value=4 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCCCC
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSPCSV 143 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqspcs~ 143 (143)
.+++.++++...||.++......++.|-..|..+=.| ..||+|
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~----g~~CPv 52 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA----KGKCPV 52 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----SEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCC
Confidence 3566677777777777666665555555555555333 557875
No 20
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=79.16 E-value=4.2 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-|+.|+++...|.+.+..++..++.+..+|+++..
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777778888888888888887754
No 21
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.93 E-value=4.4 Score=28.38 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 56 HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 56 ~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
-|+||=+||=|.=-.+ |++.. .-+.+++.||+.-..||++|.. |+.=+++||.++.++
T Consensus 19 rR~rNN~AarrSR~kr-----k~r~~------------e~~~r~~~Le~EN~~Lr~~v~~----L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 19 RRERNNIAVRKSRDKA-----KMRNL------------ETQHKVLELTAENERLQKKVEQ----LSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHH------------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHH-----HHHHH------------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 3778888777754332 22222 2356788899998999988875 444445555555543
No 22
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=78.73 E-value=4.2 Score=32.74 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
|.=-+-|..+|+++..||+-|.+--+..|.|++.++++.
T Consensus 40 P~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~ 78 (407)
T 4h8s_A 40 PQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMC 78 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888887777777777766653
No 23
>2v7s_A Probable conserved lipoprotein LPPA; unknown function, putative lipoprotein; 1.96A {Mycobacterium tuberculosis}
Probab=78.38 E-value=1.5 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcC
Q 032332 47 GNSALDEARHRYKTSVAALRAVLTAIP 73 (143)
Q Consensus 47 GggaLDeAR~RYK~AvAALRa~iaAI~ 73 (143)
+.|++++|+.+|..+++=++..|+|+-
T Consensus 55 ~kps~E~a~~~l~Aal~riAdaiaAli 81 (215)
T 2v7s_A 55 NKGSYEAARERLTATARIIADRVSAAI 81 (215)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999844
No 24
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.08 E-value=2.6 Score=28.48 Aligned_cols=65 Identities=18% Similarity=0.355 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 55 RHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
|..-|....+||..|-.++++.|+.-.++... + -+=|..|+++-..|..|+..-......|-.+|
T Consensus 13 R~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~k-------A-~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTK-------A-KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888999998866666555433332111 1 23467777777666666544333333333333
No 25
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=77.96 E-value=1.3 Score=37.28 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+||+.|..-+..+..||+-..++++.-...... ..+.+.|-+++..|+++|......++.+-++|.+
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-------------GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSS-------------CSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888889999999998888762211000 0123445566777777777777777777777777
Q ss_pred HHhhh
Q 032332 130 LITDI 134 (143)
Q Consensus 130 lI~Di 134 (143)
++.-|
T Consensus 101 ~~~~i 105 (425)
T 2dq3_A 101 TLLWI 105 (425)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 66543
No 26
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.30 E-value=6.5 Score=26.51 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
+.+++.|+++...|+.++..-+..++.|-.+++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655555555
No 27
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.74 E-value=7.4 Score=27.83 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
+.|+++|.++...||+.|..-...++.|
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999887655555444
No 28
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.52 E-value=9.7 Score=26.29 Aligned_cols=39 Identities=10% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
-.|+.|+.....||=.++..+-.++.+..+.|++-.|+-
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999999998873
No 29
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=74.42 E-value=0.66 Score=31.81 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred ccccccCCCCCCCCchhHHHHHH---HHHHHHHHHHHHHhc
Q 032332 35 ANNHHLDSSGGSGNSALDEARHR---YKTSVAALRAVLTAI 72 (143)
Q Consensus 35 ~~~hh~d~ggg~GggaLDeAR~R---YK~AvAALRa~iaAI 72 (143)
++.||.-.|||. ..+.|+-|.| ...|...||..|--+
T Consensus 4 ~~~~~~~~~~~~-~~a~erER~Rm~~lN~aF~~LR~~VP~~ 43 (68)
T 2lfh_A 4 HHHHHSHMGGGK-GPAAEEPLSLLDDMNHCYSRLRELVPGV 43 (68)
T ss_dssp CCCCCCCSSCCC-CCCBCCCSCSSSHHHHHHHHHHHHCCCC
T ss_pred ccchhhccCCCC-CCccHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344455555543 5777888876 467888888874333
No 30
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=74.22 E-value=1.5 Score=34.28 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 88 VDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 88 v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
+.||+.+-+.+..|-......|...|+.||++|+.|
T Consensus 132 LKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~~l~el 167 (172)
T 4e8u_A 132 LKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEI 167 (172)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999999987
No 31
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=73.63 E-value=3 Score=24.46 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELA 114 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~ 114 (143)
.|+|.|+||...|||.+.
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 478888898888888764
No 32
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=71.44 E-value=13 Score=24.86 Aligned_cols=68 Identities=9% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANK----NKYLKRLIDQL 127 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K----N~~lK~LIdql 127 (143)
-|||..-..-+-.+|..|. .. -... +.+++|.+++++....||+-|... -..++..++.|
T Consensus 3 ~EarN~aE~~iy~~e~~L~---~~-------e~~~------kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L 66 (113)
T 1ud0_A 3 PRGSHMLESYAFNMKATVE---DE-------KLQG------KINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKEL 66 (113)
T ss_dssp -CCHHHHHHHHHHHHHHHT---SG-------GGTT------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---ch-------hhhc------cCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 3555555555666666552 00 0122 678999999999999999888632 24577777777
Q ss_pred HHHHhhhc
Q 032332 128 RDLITDIS 135 (143)
Q Consensus 128 rdlI~DiS 135 (143)
..++..|.
T Consensus 67 ~~~~~~i~ 74 (113)
T 1ud0_A 67 EKVCNPII 74 (113)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 33
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=71.16 E-value=14 Score=23.60 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
++|.++++..-.+....+.+|...-..|+..|+.|. +.|+.+
T Consensus 7 ~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~------~~W~G~ 48 (98)
T 3gwk_C 7 KLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID------ENWDGS 48 (98)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHBCSS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccCcH
Confidence 466777777777777777777766666666666665 478765
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=71.02 E-value=7.6 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
++.++.||.++..|. ..|..|+.-|++|++++.
T Consensus 29 ~~~~~~Le~~v~~L~----~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELL----SKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 456777777777664 467778888888888764
No 35
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=70.91 E-value=3.8 Score=29.04 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------h--hHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELAN-------K--NKYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~-------K--N~~lK~LIdqlrd 129 (143)
+++|..|+++...|.++|.. . ++.+|.-|+.|.+
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 45666666666666666643 2 4568888888765
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.13 E-value=9.6 Score=31.32 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.++||++...|++.++.+.+.+++|-.++-.+..+|
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555544444443
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.63 E-value=14 Score=24.73 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 88 VDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 88 v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
++.+.+.=+..++.|++....|-+.+....+.++.|-.+|+.++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333556677777777777777777777777878887776
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.58 E-value=7.7 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA---NKNKYLKRLIDQLR 128 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~---~KN~~lK~LIdqlr 128 (143)
++.|..||.++..|+++.. ..|..|+..|.+|+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999988887654 34555555555554
No 39
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=69.24 E-value=19 Score=22.88 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 56 HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 56 ~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
++|..++.-|..=|.-+-.. ....+ .- ..|-+.|+.+-++-..|.+||..+...+..+...-+.||..
T Consensus 5 ~~F~~~l~el~~WL~~~e~~--l~~~~--~~------~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~ 72 (119)
T 3uun_A 5 DRYQTALEEVLSWLLSAEDT--LQAQG--EI------SNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHC--SC------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCCC--CC------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 57888887777777543211 11111 11 46888999999999999999999999999999988888753
No 40
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=68.87 E-value=20 Score=22.93 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 56 HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 56 ~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
++|..++..|.+=|.-+-.. ..+.+ .- ..|-+.|+.+-++-..|.+||..+...+..+...-+.||.
T Consensus 5 ~~f~~~l~el~~WL~e~e~~--l~~~~--~~------~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 5 DSYQIALEEVLTWLLSAEDT--FQEQD--DI------SDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTSC--CC------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHcCC--CC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887777543211 11111 11 5688999999999999999999999999999988888875
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.60 E-value=11 Score=30.69 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.||++|+|+...|+|+|..-.+.+..-.+.+.|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 344444444444444444433333333333333
No 42
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=68.07 E-value=5 Score=35.13 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccc-ccc-ccc--cCCCC-CCCC------CCCHHHHHHH----HHH-HHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHK-AKS-FEM--VSSPV-DSVS------RSDEVEIDKL----EER-ASLLRKEL 113 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~k-a~~-~e~--~~s~v-~~v~------~~DqaEIekL----Ee~-As~LRkEi 113 (143)
+||+.|..-+..+..||+-..+++..-. ++. -+. ...++ +.|. .....+++.| -++ +..|+++|
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i 120 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQV 120 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHH
Confidence 4888999999999999999888876421 111 010 00000 0010 0122345556 556 89999999
Q ss_pred HhhhHHHHHHHHHHHHHHhhh
Q 032332 114 ANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 114 ~~KN~~lK~LIdqlrdlI~Di 134 (143)
......++.+-++|.+++.-|
T Consensus 121 ~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 121 AGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998887654
No 43
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=67.80 E-value=2.3 Score=26.39 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=10.9
Q ss_pred cCCCCCCCCchhHHHH
Q 032332 40 LDSSGGSGNSALDEAR 55 (143)
Q Consensus 40 ~d~ggg~GggaLDeAR 55 (143)
.++|||+|||+--||-
T Consensus 11 yeggggggggsaaeay 26 (37)
T 2i9o_A 11 YEGGGGGGGGSAAEAY 26 (37)
T ss_dssp CCCSCCCCSCSSHHHH
T ss_pred eecCCCCCcchHHHHH
Confidence 4557777788777763
No 44
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.79 E-value=10 Score=24.12 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
++-++.||.++..|.+| |..|+.=|.+|++++.
T Consensus 21 k~~~~~LE~~v~~L~~e----N~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQ----NKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 46788888888776654 6777777777776654
No 45
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=66.58 E-value=17 Score=23.14 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
++.|..||.....+|.+++..+...+.|+|-=--|=..|.+|
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 678999999999999999999888787777544443444443
No 46
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.30 E-value=19 Score=23.57 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 032332 55 RHRYKTSVAALRAVLTAIP 73 (143)
Q Consensus 55 R~RYK~AvAALRa~iaAI~ 73 (143)
|.+.+.+...||..|-.++
T Consensus 24 R~~in~~f~~Lr~lvP~~~ 42 (80)
T 1hlo_A 24 RDHIKDSFHSLRDSVPSLQ 42 (80)
T ss_dssp HHHHHHHHHHHHHHSGGGT
T ss_pred HHHHHHHHHHHHHHCcCCC
Confidence 3456788899998876554
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.98 E-value=9.2 Score=24.71 Aligned_cols=25 Identities=52% Similarity=0.721 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
+.+...|+.+++.|++|+ .+||.||
T Consensus 36 ~~~N~~L~~~i~~L~~E~----~~Lk~ll 60 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEI----QYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 356667777777777774 4566555
No 48
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=65.12 E-value=4.4 Score=30.93 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVA 63 (143)
Q Consensus 50 aLDeAR~RYK~AvA 63 (143)
+|.|-|.|-.....
T Consensus 49 Smeee~~Rqe~~~~ 62 (132)
T 1yx4_A 49 SMEEQRQRQEEEAR 62 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36677777755444
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.03 E-value=19 Score=22.96 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+.+++.|++.-..|++||.. |..-+.+|+.++
T Consensus 29 e~~v~~L~~~n~~L~~ei~~----L~~e~~~Lk~~l 60 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIAN----LLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45666777777777777643 444445555444
No 50
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=64.81 E-value=16 Score=22.97 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
++|.++++.+-.+......+|...-..|+..|+.|.
T Consensus 8 ~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 8 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776666676666666666666554
No 51
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=64.61 E-value=15 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccC
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQS 139 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqs 139 (143)
++|.++++..-.+......+|...-..|+..|+.|. +.|+.
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~------~~W~G 48 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLE------GQWAG 48 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TSSCH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcCc
Confidence 577777777777766666666665555555555443 56764
No 52
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.97 E-value=21 Score=23.14 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHhh
Q 032332 101 KLEERASLLRKE---LANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 101 kLEe~As~LRkE---i~~KN~~lK~LIdqlrdlI~D 133 (143)
+||....+|..| +..||.+-|.||.-|..-|..
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeian 42 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIAN 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHH
Confidence 445444444433 567899999999888766654
No 53
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.60 E-value=15 Score=26.03 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.|.++|-++...|.+||. .+|...+.||+|+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~----~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIA----RLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 366677777777776663 3555555555554
No 54
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=63.59 E-value=14 Score=26.26 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhc
Q 032332 121 KRLIDQLRDLITDIS 135 (143)
Q Consensus 121 K~LIdqlrdlI~DiS 135 (143)
|.++|++|.+|.+|.
T Consensus 119 k~~md~iR~~~~~~~ 133 (164)
T 3va9_A 119 DRLTERIETSLSVLT 133 (164)
T ss_dssp GCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 557899999888763
No 55
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=67.15 E-value=1.5 Score=28.91 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=11.9
Q ss_pred cccccccCC---CCCCCCchhH
Q 032332 34 DANNHHLDS---SGGSGNSALD 52 (143)
Q Consensus 34 ~~~~hh~d~---ggg~GggaLD 52 (143)
+++-.|.|+ |||.|||+|+
T Consensus 17 sdslshsdgggsgggsgggsle 38 (52)
T 2lqh_B 17 SDSLSHSDGGGSGGGSGGGSLE 38 (52)
Confidence 344456666 5666688875
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.82 E-value=15 Score=24.25 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+..++.++++...|-+.+....+.++.|-.+|+.+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666654
No 57
>1jy2_O Fibrinogen beta chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_O
Probab=62.45 E-value=9.9 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 108 LLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
.||+.|-+....+|--|++|+..|.++|
T Consensus 28 eLq~tLlKQEr~Vk~si~~Lk~~v~~~S 55 (56)
T 1jy2_O 28 KLQDTLVRQERPIRKSIEDLRNTVDSVS 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHhhcchhhhHHHHHHHHHHhc
Confidence 5889999999999999999999999876
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.34 E-value=12 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
+.+++.||+.-..||++|. .|+.=++.||.|+.++
T Consensus 42 ~~r~~~L~~eN~~L~~~v~----~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVE----QLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 4566777777777777776 4555566677776543
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.87 E-value=17 Score=28.07 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+.|+..|+++...|..||..|++.+-.|.|-+--|
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777788888888888877766544
No 60
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=61.32 E-value=6.1 Score=32.13 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+++++|+++...|+++++.+.+..+...++|+.
T Consensus 192 ~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk 224 (315)
T 2ve7_A 192 AKNRALNEQIARLEQERSTANKANAERLKRLQK 224 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 445555555555555555555554444444443
No 61
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.99 E-value=26 Score=24.61 Aligned_cols=36 Identities=33% Similarity=0.318 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-|.||+||---+-.||-.|..--..-|.|=||++.+
T Consensus 15 Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~ 50 (74)
T 2q6q_A 15 KQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNL 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998887777777777777654
No 62
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.33 E-value=16 Score=24.42 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
.=++.|+++...|.++|..-.+.++.+-.+|.++-..
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999888888888777777777776665443
No 63
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=60.27 E-value=21 Score=27.18 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhhc
Q 032332 96 EVEIDKLEERASLLRKELANKNK-YLKRLIDQLRDLITDIS 135 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~-~lK~LIdqlrdlI~DiS 135 (143)
|.||++|+++++.-.-+|+.|-. -.+-|.++=+++|.-|-
T Consensus 9 Q~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP 49 (193)
T 3kyp_A 9 QKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIP 49 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCc
Confidence 78999999999887777777644 34457778888888664
No 64
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.52 E-value=22 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.||-..+++...|-++|..|...++.|-.+|..+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777888888887777776666544
No 65
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=59.41 E-value=18 Score=25.64 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA---NKNKYLKRLIDQLRDL 130 (143)
Q Consensus 98 EIekLEe~As~LRkEi~---~KN~~lK~LIdqlrdl 130 (143)
|-++|-++...++.||. ..|..|+.|..+.+.|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666654 3477778887775544
No 66
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.23 E-value=25 Score=23.48 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKN------KYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN------~~lK~LIdqlrdlI 131 (143)
++|++||++...|..+|+.-. ..+..|..++-++-
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e 69 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAE 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHH
Confidence 556666666666666665421 23444555554443
No 67
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=59.22 E-value=25 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
++-|..||.+...+|.+++..+...+.|+|-=--|=..|.+|
T Consensus 11 ~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 11 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988877777777544444444444
No 68
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=58.31 E-value=16 Score=28.60 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~D 133 (143)
..+.+|++++.+.+..+.+++..+. ..-+.|+|.+|+.|..
T Consensus 282 ~~~~~~~~~~~~a~~~v~~~~~~~~g~~g~~~l~~~~~~~~~ 323 (326)
T 3fxb_A 282 VLTDEQRSCFKEAAAEVEAKFIEMTGDSGAAILKQMKADLAA 323 (326)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 5678999999999999999987763 4678999999998875
No 69
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=57.82 E-value=23 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
..++.++.++.+.+=++|...++.+..|+++||+++..|
T Consensus 133 ~~~~~~~~~~l~~~~~~ikl~~k~id~Lv~~lr~~~~~i 171 (339)
T 1sig_A 133 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRV 171 (339)
T ss_dssp CHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 456778888888888999999999999999999988765
No 70
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=57.82 E-value=11 Score=27.38 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 107 SLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 107 s~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..||+||..|+..+..|-+.|.|-+
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~ 49 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAI 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777666666665555543
No 71
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=57.62 E-value=4.4 Score=28.30 Aligned_cols=25 Identities=32% Similarity=0.898 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHhhhccccCCCCC
Q 032332 116 KNKYLKRLIDQLRDLITDISTWQSPCSV 143 (143)
Q Consensus 116 KN~~lK~LIdqlrdlI~DiS~Wqspcs~ 143 (143)
..+++|.+++++|..|+ |-| |+||+
T Consensus 7 ~~~~i~~~l~ki~~~vt--S~W-S~CSv 31 (77)
T 3vdj_A 7 SDKHIKEYLNKIQNSLS--TEW-SPCSV 31 (77)
T ss_dssp CHHHHHHHHHHHTTTCS--SSC-CCCSC
T ss_pred cHHHHHHHHHHHhcccc--ccC-CCCCC
Confidence 35678899999988776 566 67875
No 72
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=56.60 E-value=21 Score=27.92 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+..|+++...|.+|......-.+.|..||.++|.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888899998888888888899999988875
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.53 E-value=19 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+|+++|++...|.+++...+..-|.|-+++.||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 25 KIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444444444444444
No 74
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.91 E-value=30 Score=21.67 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 032332 55 RHRYKTSVAALRA 67 (143)
Q Consensus 55 R~RYK~AvAALRa 67 (143)
+++.+|=+||.|.
T Consensus 4 ~r~erNr~AA~k~ 16 (61)
T 1t2k_D 4 KFLERNRAAASRS 16 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4555666666654
No 75
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=55.50 E-value=72 Score=24.95 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-hhHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELAN-KNKYL 120 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~-KN~~l 120 (143)
.|+.|+.+|..+..-+...-...-+. . .+. .+.+.|++|++.++..++.+... +|.|.
T Consensus 158 ~l~KaKk~Y~~~c~e~e~a~~~~~~~------~-~d~------~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~ 216 (350)
T 3aco_A 158 EVEAAKKAHHAACKEEKLAISREANS------K-ADP------SLNPEQLKKLQDKIEKCKQDVLKTKEKYE 216 (350)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHTTS------S-SSS------SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------c-cCc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677766655444333221111 0 122 35689999999999888777654 44443
No 76
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=55.16 E-value=25 Score=25.29 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=41.5
Q ss_pred cccccccCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 032332 34 DANNHHLDSSG-GSGNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKE 112 (143)
Q Consensus 34 ~~~~hh~d~gg-g~GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkE 112 (143)
+||.||+-+.- ......-+.....|..|++-|-.+|..+-+- ..+=+|-=+|=|+...|-|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~sFEeal~eLEeIV~~LE~g-----------------el~LEesl~lyeeG~~L~k~ 69 (100)
T 1vp7_A 7 HHHHHHMASSKQADPQTDARPLPQDFETALAELESLVSAMENG-----------------TLPLEQSLSAYRRGVELARV 69 (100)
T ss_dssp ------------------CCCBCCSHHHHHHHHHHHHHHHHTT-----------------CSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhcccCCCCcccCCCCCCHHHHHHHHHHHHHHHHcC-----------------CCCHHHHHHHHHHHHHHHHH
Confidence 45566655521 1112222334467999999999999877554 34455666677778888777
Q ss_pred HHhhhHHHHHHHHHH
Q 032332 113 LANKNKYLKRLIDQL 127 (143)
Q Consensus 113 i~~KN~~lK~LIdql 127 (143)
...+=....+=|..|
T Consensus 70 C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 70 CQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666656555
No 77
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=55.02 E-value=20 Score=25.62 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
|+.|+++...|.+.+..+...++.+...|+++..-
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666543
No 78
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=54.89 E-value=43 Score=22.49 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN----KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN----~~lK~LIdqlrdlI~Di 134 (143)
+++++|.+++++....|++-|.... ..++.-++.|..+..-|
T Consensus 33 kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i 78 (113)
T 3lof_A 33 KISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPI 78 (113)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999998887642 34566666666655554
No 79
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.61 E-value=33 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
+..|..||.+...+|.+++..+...+.|+|-=--|=..|.+
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566678888889999988887777777643333333433
No 80
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.03 E-value=18 Score=24.11 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 55 RHRYKTSVAALRAVLT 70 (143)
Q Consensus 55 R~RYK~AvAALRa~ia 70 (143)
|.+.+.....||..|-
T Consensus 18 R~~in~~f~~L~~lvP 33 (82)
T 1am9_A 18 RSSINDKIIELKDLVV 33 (82)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4445778889998873
No 81
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=53.76 E-value=36 Score=24.75 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+....|.+.++++...+-+.+.+-.+.++.+++.++.+.
T Consensus 33 ~t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~ 71 (244)
T 1uru_A 33 RTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ 71 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444578999999999999999999999999999888765
No 82
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=53.63 E-value=40 Score=23.73 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|-.+|+.|-++-..|.+||......+..+++.-+.||.
T Consensus 138 g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~ 177 (216)
T 1u5p_A 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177 (216)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999886
No 83
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=53.61 E-value=23 Score=24.75 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+|+.+++....|++ .|..||.|.++.+.|+
T Consensus 42 ~ie~~~eEi~~Lke----EN~~L~el~~~~~~la 71 (79)
T 2zxx_A 42 EIEQKDSEIARLRK----ENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHH----HHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34444444444443 3566777777766654
No 84
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=53.18 E-value=38 Score=21.03 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
.+|.++++.+-.+......+|...-..|+..|+.|. +.|+.+
T Consensus 5 ~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~------~~W~G~ 46 (97)
T 2vs0_A 5 KMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIA------ANWEGQ 46 (97)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSCSS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCcH
Confidence 456666665555555555555554444444444443 468764
No 85
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=53.16 E-value=13 Score=31.82 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 61 SVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 61 AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
.+..|+..|..|-+| +.-++|.++..+...++|++|.
T Consensus 9 ~~~~l~~~I~~ir~~-----------------~~~~~e~~~i~~E~~~ir~~~~ 45 (621)
T 2vgl_A 9 GMRGLAVFISDIRNC-----------------KSKEAEIKRINKELANIRSKFK 45 (621)
T ss_dssp CCHHHHHHHHHHHHC-----------------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcC-----------------CCHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888 4456889999999999999998
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.90 E-value=25 Score=29.39 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.+.||+.|+++...|.++|..-...++.|-.+|++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888877777777776654
No 87
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=52.82 E-value=28 Score=25.25 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTW 137 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~W 137 (143)
..||..|+++...+.|...+-..+.+.-|...|+.|..+.=|
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGy 44 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGY 44 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 457888888877777766666666666777778777665444
No 88
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=52.56 E-value=28 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCCHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVE--IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaE--IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.+|+.| |..||+|...+-.....+.+.+|.+-+.||||-.
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 7888888888888888888999999999998753
No 89
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=52.44 E-value=71 Score=23.88 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 62 VAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 62 vAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
=|++|.-|+.+|.. -++ .+.++.|+ |.++-++|.+....=-.-|+
T Consensus 41 Da~vrq~Ia~LP~e----Vsd--~s~l~klk--Dk~~~e~l~~~veeA~~~L~ 85 (152)
T 4fla_A 41 DATVRQKIASLPQE----VQD--VSLLEKIT--DKEAAERLSKTVDEACLLLA 85 (152)
T ss_dssp HHHHHHHHHTSCGG----GTC--GGGGGGCC--SHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCcc----ccC--HHHHHHcc--cHHHHHHHHHHHHHHHHHHH
Confidence 46678888888865 222 12234343 67777776665444333333
No 90
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=52.33 E-value=11 Score=29.68 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
++-|.|+...+++|||||..|++
T Consensus 18 ~e~ir~I~~~~~~L~kelC~~~~ 40 (174)
T 1bgc_A 18 LEQVRKIQADGAELQERLCAAHK 40 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHccccC
Confidence 46799999999999999998874
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.31 E-value=24 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
++|++.|+|+...|++++..-...++.+-+||+
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665555555555543
No 92
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=52.12 E-value=42 Score=25.65 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
...+++||+++-+.|..+ |+.++.|| .+..||-++|..+.|
T Consensus 117 ~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn-~le~~i~~~~~~l~~ 164 (219)
T 4e81_A 117 SGLNEDEIQKMVRDAEANAEADRKFEELVQTRN-QGDHLLHSTRKQVEE 164 (219)
T ss_dssp CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 368899999988777654 33344444 355677777776665
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.08 E-value=30 Score=24.47 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.+|+.|+|..+.|++| |..|+.|+.+...|
T Consensus 53 ~~ie~l~eEi~~lk~e----n~eL~elae~~q~m 82 (83)
T 1uii_A 53 KEIEQKDNEIARLKKE----NKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 4566666666666665 34556666655543
No 94
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=51.82 E-value=47 Score=23.14 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
-|.+.++.|-++-..|.++|......++.|+.+-+.||..
T Consensus 136 ~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~ 175 (213)
T 1cun_A 136 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175 (213)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4889999999999999999999999999999999998874
No 95
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.62 E-value=37 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
+||+.|+++...|+..+...+..++.+=.+++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~ 63 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVS 63 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444433333
No 96
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.54 E-value=49 Score=24.08 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.||.|......||.||.+--.--...|.||+.=|
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i 49 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHV 49 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888887765555555566665544
No 97
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=51.15 E-value=26 Score=28.75 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 032332 58 YKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 58 YK~AvAALRa~iaAI~~~ 75 (143)
||+.|.+.|++.--|++.
T Consensus 76 YKNvIgarR~swRiissi 93 (261)
T 3ubw_A 76 YKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCchhHHHHHhHH
Confidence 677777777777766554
No 98
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=51.02 E-value=19 Score=26.68 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-+||++||.||..|-. --..|..|||.|-.-
T Consensus 75 ~~elD~LEa~A~~l~~----~~~elq~~idn~n~t 105 (109)
T 2ieq_A 75 SSELKQLEAKTASLFQ----TTVELQGLIDQINST 105 (109)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Confidence 5899999999998753 334577888887653
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.75 E-value=16 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
.+.|++||.|+.|-..|+++|.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 4568999999999999988874
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.74 E-value=34 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
+..|+|+|...-..||.++..-...+..|=.+|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887765555555444443
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=50.25 E-value=46 Score=24.30 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.+.+|-+||....|++|+..|++.+..+
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~ 63 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFERE 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998866554
No 102
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=50.09 E-value=81 Score=24.63 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 54 ARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSD--EVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 54 AR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~D--qaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
...||.....-+|..+.-+......+. .++. ...+ +++++++++++..|.+++..-+..+..|-.+
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~-----~~~~--~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSS-----KPFT--GSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCS-----SCCC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccc-----cCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457899999999999888876521110 1000 0111 3446777777777776665555544444443
No 103
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.90 E-value=8.8 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 95 DEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
.+.|||.|+++...|++||+...+
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888877643
No 104
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.71 E-value=45 Score=22.25 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
++.|..||.....+|.+++..+...+.|+|-=--|=-.|.+
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56678899999999999998888777777653333333333
No 105
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.81 E-value=14 Score=24.38 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
++.|+++...+.++|..-.+.++.+-.+|.++-.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888777777777666666543
No 106
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.72 E-value=33 Score=23.93 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLL 109 (143)
Q Consensus 96 qaEIekLEe~As~L 109 (143)
+.||.+|++.-..|
T Consensus 47 ~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 47 DSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544444
No 107
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.51 E-value=16 Score=22.91 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKE 112 (143)
Q Consensus 96 qaEIekLEe~As~LRkE 112 (143)
..+|.+||++...||+|
T Consensus 14 keQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888888877
No 108
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=47.28 E-value=42 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.-...|.+|+++...|.++|..-...++.+.++.++
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~ 258 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGE 258 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999988888888777333
No 109
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=46.62 E-value=54 Score=22.99 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 100 DKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
.--|++...|++.|.-||+.+..|=|.|.-
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELIS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHH
Confidence 334555666667777788888877776543
No 110
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=46.61 E-value=22 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=21.9
Q ss_pred ccccCC-CCCCCCchhHHHHHHHHHHHHHHHHH
Q 032332 37 NHHLDS-SGGSGNSALDEARHRYKTSVAALRAV 68 (143)
Q Consensus 37 ~hh~d~-ggg~GggaLDeAR~RYK~AvAALRa~ 68 (143)
.||.|+ +|-.---..++...||+.+......+
T Consensus 13 ~QhHDaItGts~~~V~~Dy~~rl~~~~~~~~~l 45 (159)
T 1o7d_C 13 LQHHDAVSGTSRQHVANDYARQLSEGWRPCEVL 45 (159)
T ss_dssp TTBTTTTTCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcCCccChHHHHHHHHHHHHHHHHHHHHH
Confidence 466777 44444666788999999988665444
No 111
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=46.34 E-value=44 Score=26.10 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~Di 134 (143)
|.||++||+++..=.-+|+.|. +..+-|.++=+++|.-|
T Consensus 39 Q~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~I 78 (225)
T 2e50_A 39 QNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKI 78 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcc
Confidence 6788888888766555665553 34455777777777655
No 112
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=45.95 E-value=45 Score=27.12 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELAN---KNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~---KN~~lK~LIdqlrdlI~ 132 (143)
|.++|-++...|.+||.. .|..||.|+.++..|..
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555442 36677777777666543
No 113
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=45.77 E-value=36 Score=25.33 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|.+.+|++...+-+.+.+-.+.+|.+++.++.+..
T Consensus 51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~ 87 (251)
T 2fic_A 51 DEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHE 87 (251)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999887653
No 114
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.66 E-value=40 Score=25.78 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
.-+-.++|++...|++.+..|...|..|=+||.+|-.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999998854
No 115
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=45.38 E-value=31 Score=25.01 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEER-------ASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~-------As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+-|+.||+++|.. +..|=++...+|.-|..|++-|+.+
T Consensus 54 ry~~~ei~~ie~~~~~~~SPT~~LL~~Wg~~~~TV~~Ll~lL~~~ 98 (127)
T 1wh4_A 54 RYNQFHIRRFEALLQTGKSPTCELLFDWGTTNCTVGDLVDLLVQI 98 (127)
T ss_dssp SSCHHHHHHHHHHHTTTSCHHHHHHHHHHHHCCBHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHhhccCCCHHHHHHHHHhccCCcHHHHHHHHHHc
Confidence 6789999999986 5778888899999999999998764
No 116
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=45.01 E-value=12 Score=22.23 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHH
Q 032332 115 NKNKYLKRLIDQLRD 129 (143)
Q Consensus 115 ~KN~~lK~LIdqlrd 129 (143)
-|+.+||.|+.+||.
T Consensus 13 fkqrvlkrllamlrq 27 (30)
T 2l3i_A 13 FKQRVLKRLLAMLRQ 27 (30)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 478899999999985
No 117
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.93 E-value=52 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHhhh
Q 032332 93 RSDEVEIDKL----EERASLLRKELANKNKYLKRLI-------DQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekL----Ee~As~LRkEi~~KN~~lK~LI-------dqlrdlI~Di 134 (143)
+.-+++|++| .++...||+++..|...|..|+ ++++.|+..|
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei 122 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEM 122 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3445555444 2344566777777666666665 3555555444
No 118
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=44.92 E-value=28 Score=28.70 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032332 57 RYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSD-EVEIDKLEERASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~D-qaEIekLEe~As~LRkEi~~KN~~lK~LId 125 (143)
-||+.|-+.|++.--|++..+... ++ +.. +..+..+++--..+.+||..--..+=.|||
T Consensus 70 AYKNvIgarR~swRiissieqke~----e~------kg~~~~~~~~i~~yr~kie~EL~~iC~diL~llD 129 (268)
T 3efz_A 70 SLRNRVTSIRNSLKSIKSQEEKLR----KE------KSLNNEFIQVIEDIKRDFEESILLESEDVIRIID 129 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHhh----hc------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999988876633210 11 222 344455555555555555544333334444
No 119
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=44.89 E-value=37 Score=27.58 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 032332 57 RYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~ 75 (143)
-||+.|.+.|++.--|++-
T Consensus 75 AyKNvIg~rR~swRiissi 93 (260)
T 2npm_A 75 AYKNAVGSRRSSWRIISSV 93 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHH
Confidence 5999999999999888764
No 120
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=44.82 E-value=54 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
....+.|.+|++-..|-+++.+-.+.+|.+++.++.+.
T Consensus 30 T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~ 67 (237)
T 4avm_A 30 TKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMH 67 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999999999998875
No 121
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=44.79 E-value=73 Score=23.71 Aligned_cols=51 Identities=8% Similarity=0.234 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi 113 (143)
.|+.|+.+|..+..-+...-.... ++. .+. ...+.+++|++.++.....++
T Consensus 131 ~l~KaKk~Y~~~~~e~e~a~~~~~---~a~----~~~------~~s~~~~eK~~~k~~~~~~~~ 181 (301)
T 2efk_A 131 QLENSKRKFERDCREAEKAAQTAE---RLD----QDI------NATKADVEKAKQQAHLRSHMA 181 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHH----HCT------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhc----cCc------ccCHHHHHHHHHHHHHHHHHH
Confidence 466777777766543332222211 111 111 345678889888877655443
No 122
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.66 E-value=32 Score=31.46 Aligned_cols=85 Identities=18% Similarity=0.380 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHH----------HH-HHHHHHHHHHHHHHHhh
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEV----------EI-DKLEERASLLRKELANK 116 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~Dqa----------EI-ekLEe~As~LRkEi~~K 116 (143)
-|.||+..+-.++.|.=||.-+.-|....|- ++.-+...++.+ +..+. || +.||+|...|+.+|.++
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKd-seqy~k~~~E~L-r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKD-SHSLTTNIMEIL-RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHH-HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999998888433221 111111111111 11111 12 26888999999998887
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 032332 117 NKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 117 N~~lK~LIdqlrdlI~Di 134 (143)
-..++.|=..|+++..+|
T Consensus 130 lsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666666544
No 123
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=44.56 E-value=33 Score=26.11 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRD 129 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrd 129 (143)
..|.+|++++.+.+..+++++..+. ...+.+++.+++
T Consensus 263 ~~~~e~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 300 (301)
T 2pfz_A 263 APTAELKSGLTEVGKRMLDDWLKKAGADGQAMIDAYRK 300 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhc
Confidence 5788999999999999999987665 557778887764
No 124
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=44.16 E-value=48 Score=28.38 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
...+++||+++-+.+... |+.++.|| .+..||.++|..+.+
T Consensus 505 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n-~~e~~~~~~~~~~~~ 552 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANAEADRKCEELVQTRN-QGDHLLHSTRKQVEE 552 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 468999999988777664 34455555 467778888877765
No 125
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=44.13 E-value=57 Score=22.66 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIST 136 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~ 136 (143)
+.|..||.....+|.+++......+.|++-=.-|=..|.+
T Consensus 44 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 44 RMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777788888887766666666643333333433
No 126
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=43.78 E-value=5.7 Score=26.89 Aligned_cols=11 Identities=36% Similarity=0.864 Sum_probs=7.4
Q ss_pred CCCCCCCCchh
Q 032332 41 DSSGGSGNSAL 51 (143)
Q Consensus 41 d~ggg~GggaL 51 (143)
++|||+|||-|
T Consensus 27 eggggggggel 37 (62)
T 2i7u_A 27 EGGGGGGGGEL 37 (62)
T ss_dssp HCSSCSSSCHH
T ss_pred hcCCCCchHHH
Confidence 45677777765
No 127
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=43.63 E-value=36 Score=22.60 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
.+|-|...-+-||+|+..+--+|-.|
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 45667777788999998877666544
No 128
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=43.25 E-value=1.1e+02 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 032332 43 SGGSGNSALDEARHRYKTSVAAL 65 (143)
Q Consensus 43 ggg~GggaLDeAR~RYK~AvAAL 65 (143)
|=+.++..+|+|+..|+.++..|
T Consensus 128 gl~~t~~~ld~a~~~~~~~l~~l 150 (217)
T 3aon_A 128 GYLHSNAELDRSIDGFTQLLPKL 150 (217)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHH
Confidence 44456889999999999988765
No 129
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=43.23 E-value=28 Score=26.76 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANK-NKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~K-N~~lK~LIdqlrdlI~D 133 (143)
..+.+|++++.+.+..+++++..+ ...-+.+++++++.|..
T Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 309 (316)
T 2vpn_A 268 RLNDEQIQAFKERAPQVEEKFIEMTGEQGQELLDQFKADLKA 309 (316)
T ss_dssp ECCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 567889999999999999998765 35567889998886643
No 130
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=43.02 E-value=65 Score=23.83 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..|..+++.|-++-..|.+||......++.|..+-+.||..
T Consensus 244 g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~ 284 (322)
T 1u4q_A 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 284 (322)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999998864
No 131
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=42.99 E-value=69 Score=23.90 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.|-.+++.|-++-..|+.||..+...+..+++.=+.||..
T Consensus 248 ~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~ 288 (323)
T 3edv_A 248 PRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR 288 (323)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56888999999999999999999999999999988888764
No 132
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.80 E-value=58 Score=28.26 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHhh-hccccCCCC
Q 032332 96 EVEIDKLEERA-------SLLRKELANKNKYLKRLIDQLRDLITD-ISTWQSPCS 142 (143)
Q Consensus 96 qaEIekLEe~A-------s~LRkEi~~KN~~lK~LIdqlrdlI~D-iS~Wqspcs 142 (143)
-.||+++|... ..|+..+..++.- |.+|++.|.. ..+++.||.
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----i~~L~~~v~~l~~~~~~~~~ 140 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQK----IVNLKEKVAQLEAQCQEPCK 140 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTSCSCCE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCC
Confidence 35666665544 4555555555443 3444444433 347888883
No 133
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=42.65 E-value=31 Score=24.50 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 92 SRSDEVEIDKLEER-------ASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 92 ~~~DqaEIekLEe~-------As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
-+.++.||+++|.. +..|=++...+|.-|+.|++-|+.+
T Consensus 46 ~ky~~~~i~~~e~~~~~~~SPT~~LL~~Wg~~~~TV~~Ll~lL~~~ 91 (113)
T 2a9i_A 46 DRYNQFHIRRFEALLQTGLSPTCELLFDWGTTNCTVGDLVDLLVQI 91 (113)
T ss_dssp BSSCHHHHHHHHHTTTTTCCHHHHHHHHHGGGTCBHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhccCCCHHHHHHHHHccCCCcHHHHHHHHHHc
Confidence 37789999999986 7788899999999999999988754
No 134
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=42.59 E-value=81 Score=22.08 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.|-..++.|-++=..|++||..+...+..+...=..|+.+
T Consensus 29 ~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~ 69 (214)
T 1s35_A 29 PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQG 69 (214)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 66889999999999999999999999998888877777764
No 135
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.44 E-value=32 Score=23.23 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKEL 113 (143)
Q Consensus 97 aEIekLEe~As~LRkEi 113 (143)
+-|+.||.+..-+-+-|
T Consensus 14 ~Ri~~LE~klAfqE~tI 30 (78)
T 3efg_A 14 ARLVELETRLSFQEQAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666654433333
No 136
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=42.41 E-value=43 Score=27.16 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 032332 57 RYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~ 75 (143)
-||+.|.+.|++.--|++.
T Consensus 54 aYKNvig~rR~swRiissi 72 (260)
T 1o9d_A 54 AYKNVIGARRASWRIISSI 72 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHH
Confidence 4999999999999998765
No 137
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.21 E-value=63 Score=20.36 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.+.|||+....|-.++..-....|.+-+.|...+.++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666666777776666554
No 138
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.02 E-value=36 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCC
Q 032332 108 LLRKELANKNKYLKRLIDQLRDLITDISTWQSPC 141 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqspc 141 (143)
.||+.|-....+...|+....+.|.+++.|..|+
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~ 81 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNELLKELGSLPLPL 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4566666666666666666666666666665443
No 139
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=41.91 E-value=62 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 101 KLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.|-+-+..+.+||..|+.++|.|=|-+-.|+.-|
T Consensus 18 ELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRV 51 (75)
T 3tso_C 18 EVLQELVKHKELLRRKDTHIRELEDYIDNLLVRV 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999888866666665443
No 140
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=41.42 E-value=64 Score=25.74 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH-HHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 43 SGGSGNSALDEARHRYKTSVAAL-RAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 43 ggg~GggaLDeAR~RYK~AvAAL-Ra~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
-++||---.|+|=.+.+..+.-| +++++|+... ++ . + +.--.+.+.|+...+=+||..+...|.
T Consensus 22 d~APGQ~eCd~AI~~in~~i~dLd~AsLaA~s~~-----L~---~------~-~~~s~~~~qeq~~~~~~eL~~~i~~l~ 86 (216)
T 4f7g_B 22 SKAPGQLECETAIAALNSCLRDLDQASLAAVSQQ-----LA---P------R-EGISQEALHTQMLTAVQEISHLIEPLA 86 (216)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CC---C------C-CSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CC---C------C-CCccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 68899889999999999988877 6888888775 22 2 1 111134566666666666666555443
No 141
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=41.40 E-value=10 Score=22.47 Aligned_cols=8 Identities=50% Similarity=0.991 Sum_probs=4.0
Q ss_pred CCCCCCch
Q 032332 43 SGGSGNSA 50 (143)
Q Consensus 43 ggg~Ggga 50 (143)
|||+|||+
T Consensus 2 ggggggga 9 (29)
T 1cn3_F 2 GGGGGGGA 9 (29)
T ss_dssp CCCCCSTT
T ss_pred CCCCCCcc
Confidence 44455554
No 142
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=41.34 E-value=55 Score=19.41 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKY----LKRLIDQLRDLITD 133 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~----lK~LIdqlrdlI~D 133 (143)
..+||..|-.....+++.|...... +..+-.+|+.-++.
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~ 77 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTR 77 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4579999988888877776654444 44444444444433
No 143
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=40.90 E-value=79 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..+++||+++-+++..+ |+.++.|| .+..||-++|..+.|
T Consensus 115 ~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn-~le~~i~~~~~~l~~ 161 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYAEQDVKARMLAEQKV-EAARVLESLHGALAA 161 (227)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcccHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 57899999987766654 33344444 477788888877765
No 144
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.80 E-value=65 Score=20.11 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLR 110 (143)
Q Consensus 98 EIekLEe~As~LR 110 (143)
.|+.||+++..|-
T Consensus 23 ~~~~Le~~~~~L~ 35 (61)
T 1t2k_D 23 WVQSLEKKAEDLS 35 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555544433
No 145
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=40.44 E-value=30 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 032332 57 RYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~ 75 (143)
-||+.|.+.|++..-|++-
T Consensus 49 ayKnvig~rR~swRiissi 67 (234)
T 2br9_A 49 AYKNVIGARRASWRIISSI 67 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5999999999999888764
No 146
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=40.41 E-value=43 Score=29.57 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKY-------LKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~-------lK~LIdqlrdlI 131 (143)
....-|++||++....|++||+.-+.. .+.+++.|.++.
T Consensus 412 rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 457 (470)
T 3ilw_A 412 RLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIV 457 (470)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 556678888888888888887765544 445555555554
No 147
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=40.29 E-value=54 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdl 130 (143)
.+.+++|+++...||+-|...+ +.|+.++++-|++
T Consensus 250 ~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~ 285 (290)
T 3b1f_A 250 LDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQI 285 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578888888888888887666 4677777666654
No 148
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.95 E-value=80 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKN 117 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN 117 (143)
+|+.+++....|..|+....
T Consensus 83 ~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 149
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.93 E-value=3.1 Score=26.84 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~ 114 (143)
|.++-+.-.+|..+...|+--+....... ...+. .. .....+++||++|+++...||+|++
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g-~~~~~--~~---~~~~~~~~ei~~L~~e~~~L~~e~~ 83 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNH-NVQGT--TP---SAAVSEAEQIRQLKKENALQRARTR 83 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCS-TTCSC--CC---CHHHHTHHHHHHHHHCGGGGGGTTS
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcC-cccCC--CC---CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 34566777778877777777765543321 01111 01 0112356788888887777777765
No 150
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=39.44 E-value=38 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-KYLKRLIDQLR 128 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlr 128 (143)
..|.+|.+++.+.+..+++++..+. ...+.+++.+|
T Consensus 264 ~~~~e~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 300 (301)
T 2pfy_A 264 PLPPQLAKELQAIGATMVSDWSKKAGADGQQLLDAYR 300 (301)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHh
Confidence 5688899999999999999987665 56777888776
No 151
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=38.98 E-value=32 Score=27.82 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhcCCccc
Q 032332 57 RYKTSVAALRAVLTAIPNSHK 77 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~k 77 (143)
-||+.|-+.|++.--|++-.+
T Consensus 48 AYKNvig~rR~swRiissieq 68 (248)
T 3uzd_A 48 AYKNVVGARRSSWRVISSIEQ 68 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHH
Confidence 599999999999999976533
No 152
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG; 3.20A {Human respiratory syncytial virus}
Probab=38.47 E-value=66 Score=29.30 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-----------------------------cCCccccccccccCCCCCCCCCCCHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTA-----------------------------IPNSHKAKSFEMVSSPVDSVSRSDEVEIDK 101 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaA-----------------------------I~~~~ka~~~e~~~s~v~~v~~~DqaEIek 101 (143)
+-.--.+||+||.-||....- +.+..|..++= |.. +-=.+-.+
T Consensus 79 i~~el~~~~~a~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~rAQI-TAa-------vAL~qA~q 150 (528)
T 3rki_A 79 IKQELDKYKNAVTELQLLMQSTPATNNRARRELPRFMNYTLNNAKKTNVTLSKKRKRRSAI-ASG-------VAVSKVLH 150 (528)
T ss_dssp HHHHHHHHHHHHHHHHGGGCC--------------------------------------CC-CSS-------SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccchhhhccchhhhhhcccchhhhhhhccchhHHHHH-HHH-------HHHHHHHH
Confidence 444556999999999986543 33333332222 222 22344556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 102 LEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 102 LEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.+.....|++-|..-|+.+..|.+-++.|+.=|
T Consensus 151 NA~nIlrLKeSI~~TNeAV~elt~gls~lavAV 183 (528)
T 3rki_A 151 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKV 183 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888889999998888888777765433
No 153
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=38.12 E-value=27 Score=23.85 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 032332 56 HRYKTSVAALRAV 68 (143)
Q Consensus 56 ~RYK~AvAALRa~ 68 (143)
.+=|..+.+||.-
T Consensus 36 k~ekEQL~~LKkk 48 (66)
T 2v7q_J 36 ARAKEQLAALKKH 48 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334455555543
No 154
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.82 E-value=81 Score=21.67 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
-..=++.|++|...|++.+..-.+.+..+-+|+..+..-|
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455899999999999999988888888877777665443
No 155
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=37.60 E-value=80 Score=22.56 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.|-++++.|=++-..|++||..+...+..++..=..||..
T Consensus 42 ~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~ 82 (218)
T 3fb2_A 42 AKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAH 82 (218)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 67888999998888999999999988888887776666654
No 156
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.43 E-value=22 Score=32.29 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+.-++|-++|.+=+.+|+||-...+..=..+|.-+|+.|
T Consensus 160 ~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~ 198 (526)
T 3iyk_A 160 KILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKI 198 (526)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Confidence 333444444444455555555555555445554444444
No 157
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.40 E-value=1e+02 Score=21.30 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhhh
Q 032332 101 KLEERASLLRKELA-------NKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 101 kLEe~As~LRkEi~-------~KN~~lK~LIdqlrdlI~Di 134 (143)
.||++...|...|+ ....-||.++.+|--=|-|+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35555555555544 34466777777776555554
No 158
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.38 E-value=58 Score=30.76 Aligned_cols=12 Identities=50% Similarity=0.601 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 032332 104 ERASLLRKELAN 115 (143)
Q Consensus 104 e~As~LRkEi~~ 115 (143)
++...||+++.+
T Consensus 991 ~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 991 EEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 159
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=37.13 E-value=47 Score=21.49 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
-|..||++.+.+-.||++-|+.||+
T Consensus 19 kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4667888888888888887776664
No 160
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=36.66 E-value=98 Score=22.83 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccccc--cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALRAVLTAIPNSHKAKSF--EMVSSPVDSVSRSDEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 50 aLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~--e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi 113 (143)
.||.-+.+|+.-..+||+-+-|- |..=|.++ +...+ |..++.|+.+......|+||-
T Consensus 28 ~leaie~~fa~~r~~le~emRaa-n~~La~ai~~~~~~~------p~V~aaid~~h~~mG~LQkeT 86 (118)
T 2y39_A 28 ILELKEDAFAQRRREIETRLRAA-NGKLADAIAKNPAWS------PEVEAATQEVERAAGDLQRAT 86 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccC------HHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888777655431 11111111 12333 888999999999999999997
No 161
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=36.62 E-value=77 Score=24.50 Aligned_cols=39 Identities=5% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
....|.+.+|++-..|-+++.+-.+.+|.+++.++.+..
T Consensus 35 T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~ 73 (243)
T 4a3a_A 35 TKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQE 73 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999998763
No 162
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.55 E-value=41 Score=23.37 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHHH
Q 032332 115 NKNKYLKRLIDQLRD 129 (143)
Q Consensus 115 ~KN~~lK~LIdqlrd 129 (143)
..|..|+.-|++|..
T Consensus 50 ~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 50 AENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 163
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.53 E-value=66 Score=19.39 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELAN 115 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~ 115 (143)
||..|.+....|.|||+.
T Consensus 3 eiaalkqeiaalkkeiaa 20 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788888888888888864
No 164
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=36.30 E-value=18 Score=30.69 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=9.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHH
Q 032332 41 DSSGGSGNSALDEARHRYKTSVAA 64 (143)
Q Consensus 41 d~ggg~GggaLDeAR~RYK~AvAA 64 (143)
|++=|.|||-+ +|+..|.++
T Consensus 28 DGs~~EGGGQ~----lR~alaLS~ 47 (358)
T 3tut_A 28 DGAQGEGGGQI----LRSALSLSM 47 (358)
T ss_dssp ETTSTTCSTHH----HHHHHHHHH
T ss_pred eCCcccCchHH----HHHHHHHHH
Confidence 33334566643 455444443
No 165
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=35.93 E-value=96 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKN-KYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN-~~lK~LIdqlrd 129 (143)
.|++++++...||+.|..++ ..|..++++.|+
T Consensus 240 ~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~a~~ 272 (298)
T 2pv7_A 240 VIETLKQTYDEALTFFENNDRQGFIDAFHKVRD 272 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888887777655 445555555544
No 166
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.86 E-value=81 Score=19.77 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 032332 55 RHRYKTSVAALR 66 (143)
Q Consensus 55 R~RYK~AvAALR 66 (143)
|-|.+|=+||-|
T Consensus 4 rrr~rNr~AA~k 15 (62)
T 1jnm_A 4 RKRMRNRIAASK 15 (62)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 345555555554
No 167
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=35.82 E-value=84 Score=26.88 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 92 SRSDEVEIDKLEERASLL-------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~L-------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
...+++||+++-+.+..+ |+.++.|| .+..||.++|..+.|
T Consensus 505 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n-~~e~~~~~~~~~l~~ 552 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANAEADRKFDELVQTRN-QGDHLLHSTRKQVEE 552 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 468899999987776654 23334444 467788888877765
No 168
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.80 E-value=1.1e+02 Score=21.09 Aligned_cols=25 Identities=8% Similarity=0.244 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
++.-..-|+..++-|+.-|..|++.
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~i~~~ 41 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPERLLGT 41 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445567888888888888888654
No 169
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=35.72 E-value=65 Score=21.61 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 87 PVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 87 ~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
++++..|...+|.++|.+-.+..=...+.+--|.-.+.+-+|++..+++
T Consensus 4 ~l~~f~P~Tk~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~ 52 (80)
T 3bpj_A 4 GIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLE 52 (80)
T ss_dssp CTTTCCCCSHHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCC
Confidence 4556678899999999877654433355555566666666677665543
No 170
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.68 E-value=91 Score=22.70 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=7.8
Q ss_pred HhhhHHHHHHHHHHHHH
Q 032332 114 ANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 114 ~~KN~~lK~LIdqlrdl 130 (143)
.+|=..+..|+....++
T Consensus 45 F~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 45 FNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555444443
No 171
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=35.63 E-value=89 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
+-+.-|++.|..--+||-+||-++.--|..|..||.
T Consensus 65 dsV~~L~dDAed~~~~~~~~~~~~~~~~~~~~~~~~ 100 (107)
T 2wps_A 65 DSITTLMKQIEDKIEEILSKIYHIENEIARIKKLIK 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888889999999999999998888874
No 172
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=35.40 E-value=66 Score=22.17 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
+.|.+.+..|+.+...|+++|.+-.+.+++
T Consensus 12 ~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 12 KSDLEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888888888888888765554443
No 173
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=35.25 E-value=9 Score=22.53 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHH
Q 032332 51 LDEARHRYKTSV 62 (143)
Q Consensus 51 LDeAR~RYK~Av 62 (143)
+|+|+.+||.++
T Consensus 15 VDqakk~ykkt~ 26 (27)
T 2ybf_B 15 VDQARKGYKKIA 26 (27)
T ss_dssp HHHHHTTC----
T ss_pred HHHHHHHHhhcc
Confidence 699999999865
No 174
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=35.23 E-value=26 Score=29.97 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 52 DEARHRYKTSVAALRAVL 69 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~i 69 (143)
|+.-++.|+|+..|-.++
T Consensus 22 ~~~~e~vk~al~Sls~iv 39 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGAL 39 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455566677666655444
No 175
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.09 E-value=86 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
|.+|.-+-..|+.++..|+.-+|.|-.||.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444433
No 176
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=35.07 E-value=34 Score=26.74 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 95 DEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
-++-|.++...+++||||+..++.
T Consensus 12 ~~~~ik~Il~~i~~l~~elC~~~~ 35 (181)
T 1i1r_B 12 LIQRLNWMLWVIDECFRDLCYRTG 35 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357799999999999999998763
No 177
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=34.88 E-value=59 Score=29.00 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKY-------LKRLIDQLRDLI 131 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~-------lK~LIdqlrdlI 131 (143)
....|++||+++...|.+||+.-++. .+.+++.|.++.
T Consensus 451 LT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~ 495 (514)
T 2inr_A 451 LTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIK 495 (514)
T ss_dssp GSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34557788888887777777654443 444555555554
No 178
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.47 E-value=40 Score=21.34 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKEL 113 (143)
Q Consensus 97 aEIekLEe~As~LRkEi 113 (143)
.||+|-|++...|++.+
T Consensus 16 rEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999888754
No 179
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.41 E-value=88 Score=19.77 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
++.|+.||.++..|- ..|..|+.-|.+|++-+..
T Consensus 22 k~~~~~Le~~v~~L~----~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 22 RELTDTLQAETDQLE----DEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 457888888887554 4566666667776665543
No 180
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=34.36 E-value=73 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhhccccC
Q 032332 99 IDKLEERASLLRKELANK---NKYLKRLIDQLRDLITDISTWQS 139 (143)
Q Consensus 99 IekLEe~As~LRkEi~~K---N~~lK~LIdqlrdlI~DiS~Wqs 139 (143)
|+..+++...|++++... +..|..+|+.|+..|+=.-.|..
T Consensus 267 i~~~~~~~~~l~~~l~~~~~~~~~l~~yv~~l~~~~~G~~~Ws~ 310 (320)
T 3bny_A 267 CREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQ 310 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHhhhhHHHhc
Confidence 444455566666665443 68889999999999998888853
No 181
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=33.81 E-value=59 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKY-------LKRLIDQLRDLIT 132 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~-------lK~LIdqlrdlI~ 132 (143)
....|++||+++...|.+||+.-++. .+.+++.|.++..
T Consensus 427 Lt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 472 (496)
T 2nov_A 427 LTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKK 472 (496)
T ss_dssp GSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888765554 3455666665543
No 182
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.62 E-value=49 Score=29.85 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
-|.||+..+-+|+.|.=||-.|.-++...+-.-.-+ -. +..+-+.+++.+...|...+.+=.||+++-.|||.
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~-~~-~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~ 125 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVI-VE-TINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQ 125 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHH-HH-HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998866533222111 00 00112456667766666666666666666666654
No 183
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=33.52 E-value=1.6e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hhHHH
Q 032332 94 SDEVEIDKLEERASLLRKELAN-KNKYL 120 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~-KN~~l 120 (143)
..+.+++|++.+...++.+... +|.|.
T Consensus 180 ~s~k~~eK~~~k~~k~~~~~~~a~~~Y~ 207 (337)
T 2x3v_A 180 VTPEQQKKLVDKVDKCRQDVQKTQEKYE 207 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999888877766653 44443
No 184
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=32.95 E-value=1.1e+02 Score=20.97 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
..+++.+++|++-+..|-+-+..+|+
T Consensus 147 ~~~~~~~~~l~~~~~~l~~~~~~~~~ 172 (174)
T 3gfs_A 147 TVAENIKESIKELVEELSMFAKAGNP 172 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566677777777777766666554
No 185
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=32.85 E-value=1.2e+02 Score=22.56 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|..+|+.|-++-..+++||..+...+..|..+-+.|+.
T Consensus 33 g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~ 72 (326)
T 3kbt_A 33 PKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLS 72 (326)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999888889999999999999988888777775
No 186
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.83 E-value=92 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
+.||+.|+++..+||..+..
T Consensus 40 ~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 56888888888888887744
No 187
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.74 E-value=56 Score=23.12 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=6.9
Q ss_pred HHhhhHHHHHHHHHH
Q 032332 113 LANKNKYLKRLIDQL 127 (143)
Q Consensus 113 i~~KN~~lK~LIdql 127 (143)
++..-.|+..+|+.|
T Consensus 67 lA~~~q~la~~i~~L 81 (83)
T 1wlq_A 67 VAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444555555443
No 188
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.63 E-value=1.2e+02 Score=20.66 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhhh
Q 032332 102 LEERASLLRKELA-------NKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 102 LEe~As~LRkEi~-------~KN~~lK~LIdqlrdlI~Di 134 (143)
||++...|...|+ ....-||.++.+|--=|-|+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555544443 34466777777766555554
No 189
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.36 E-value=1.1e+02 Score=20.47 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.+.|+..+++....|++.+..-....|.|=.++..|
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l 47 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTL 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776666666654444444444443333
No 190
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.35 E-value=40 Score=20.40 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi 113 (143)
....|+.||++...|.+.|
T Consensus 42 ~~~~~~~L~~ri~~Le~~l 60 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEEN 60 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4556777777776665544
No 191
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=32.20 E-value=1.3e+02 Score=21.01 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..|.++++.|-++-..+.++|......++.|+..-+.||..
T Consensus 136 g~~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~ 176 (214)
T 1s35_A 136 PDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE 176 (214)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999988888754
No 192
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=32.02 E-value=1.1e+02 Score=24.31 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 92 SRSDEVEIDKLE------ERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 92 ~~~DqaEIekLE------e~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-..|.++|+... +.|-.|=..++++..-...+|.+||+++-
T Consensus 419 ~~~d~~~i~~~~~~~~~~~~a~~~~~~~~~~~~w~~~~~~~l~~~~~ 465 (477)
T 2vgq_A 419 TARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCEL 465 (477)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHTTSTTHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHhhCCChHHHHHHHHHHcCc
Confidence 356777777662 33445555567889999999999998653
No 193
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=32.01 E-value=1.3e+02 Score=24.94 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~ 114 (143)
+.+.+++|++.+....+.++.
T Consensus 182 ~t~k~~eK~~~k~~k~~~~~~ 202 (486)
T 3haj_A 182 LNPEQLKKLQDKIEKCKQDVL 202 (486)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 345789999888777665543
No 194
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=31.97 E-value=53 Score=19.82 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 103 EERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 103 Ee~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
|++....++-+-++|..||.=|.||+
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55566677777888999998888875
No 195
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.86 E-value=45 Score=21.75 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKEL 113 (143)
Q Consensus 97 aEIekLEe~As~LRkEi 113 (143)
.++++|+++...||+|.
T Consensus 54 ~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 196
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=31.66 E-value=63 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK 121 (143)
+.++.|-++|++-+..||+|+..-...||
T Consensus 303 ~L~~~E~~~l~~sa~~L~~~~~~~~~~l~ 331 (333)
T 5mdh_A 303 PINDFSREKMDLTAKELAEEKETAFEFLS 331 (333)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999876555544
No 197
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.62 E-value=83 Score=22.23 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
++.|..||.....+|.+++.-+.....|+|-
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888877776666663
No 198
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=31.57 E-value=68 Score=29.78 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELANKN-------KYLKRLIDQLRDLIT 132 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN-------~~lK~LIdqlrdlI~ 132 (143)
..-|++||++...+|++||+.-+ +..+.+++.|+++..
T Consensus 400 t~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ 444 (716)
T 1zvu_A 400 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 444 (716)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34578888888888888877544 345556666666543
No 199
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=31.51 E-value=90 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
..|.++++++=+++..+|+.++
T Consensus 269 ~~d~~~l~~~~~~~~~~r~~~~ 290 (290)
T 3b1f_A 269 ARDENAIWAFFNQSRQIRKNME 290 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHHHHhcC
Confidence 4678889998899999998763
No 200
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=31.40 E-value=84 Score=25.17 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 032332 57 RYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~ 75 (143)
-||+.|-+.|++..-|++-
T Consensus 54 AYKNvig~rR~swRiissi 72 (227)
T 2o8p_A 54 CIKHKISDYRTMTSQVLQE 72 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHHHHHH
Confidence 5999999999999999875
No 201
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.39 E-value=85 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
++-|..||+....+|.+++.-......|+|-
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999998887777777664
No 202
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=31.23 E-value=42 Score=26.18 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 032332 96 EVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~ 118 (143)
+.-|.++...+++|||||..++.
T Consensus 28 ~~~i~~il~~i~~l~~elC~~~~ 50 (186)
T 1alu_A 28 DKQIRYILDGISALRKETCNKSN 50 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999998876
No 203
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=31.17 E-value=61 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~K 116 (143)
+.++.|-++|++-+..||+++..-
T Consensus 281 ~L~~~E~~~l~~s~~~l~~~~~~~ 304 (314)
T 3nep_X 281 DLDADEKAQLKTSAGHVHSNLDDL 304 (314)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 204
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=30.92 E-value=73 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 108 LLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 108 ~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.|++||.+.|...-+.--+|.||..|+
T Consensus 7 eLkkevkKL~~~A~q~kmdLHDLaEdL 33 (71)
T 2js5_A 7 ELKAKLKKLNAQATALKMDLHDLAEDL 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhccc
Confidence 467777777777777778889998884
No 205
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.59 E-value=91 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.+|++++++...++++|...+..-|.|-+++.||=
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 24 RCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556666666666666666666677777776663
No 206
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=30.37 E-value=33 Score=29.70 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDIS 135 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS 135 (143)
....++.++.+....+=++|...++.+..|+++||+++..|-
T Consensus 240 ~~~~~~~~~~~~l~~~~~~lkL~~k~id~Lv~~lr~~~~~ir 281 (613)
T 3iyd_F 240 RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 281 (613)
T ss_dssp SCSHHHHHHHHHHHHHHTTSCBCHHHHHHHTHHHHTTTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888999999999999999887653
No 207
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.31 E-value=1.2e+02 Score=20.44 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKY---LKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~---lK~LIdqlrdlI 131 (143)
.-=++.|..-+++++.|..+|..|..- |+..||++++.+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344678888899999999999888654 444455555443
No 208
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.28 E-value=60 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q 032332 100 DKLEERASLLRKELANKNK 118 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~ 118 (143)
..|+++...||+|+..-..
T Consensus 10 ~~l~~~~~~l~~~i~~lke 28 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLEN 28 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666654333
No 209
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=30.09 E-value=53 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~l 120 (143)
+.++.|-++|++-+..||++|..--+++
T Consensus 283 ~L~~~E~~~l~~s~~~l~~~i~~g~~~~ 310 (312)
T 3hhp_A 283 TLSAFEQNALEGMLDTLKKDIALGEEFV 310 (312)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998765544
No 210
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.83 E-value=16 Score=26.06 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHH--------HHHHHHHHHHHHHH------HHhhhHHHHHHH
Q 032332 59 KTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVE--------IDKLEERASLLRKE------LANKNKYLKRLI 124 (143)
Q Consensus 59 K~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaE--------IekLEe~As~LRkE------i~~KN~~lK~LI 124 (143)
+.....||.. ||++.+. +. +.|.+. |..|+++...|+.+ +...|..|+.-|
T Consensus 43 n~~~~~L~~l---vP~~~~~------~~------k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~ri 107 (118)
T 4ati_A 43 NDRIKELGTL---IPKSNDP------DM------RWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRV 107 (118)
T ss_dssp HHHHHHHHHH---SCCC----------C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHH---HhhccCc------cc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777765 6766321 11 344444 56778887777654 445566666555
Q ss_pred HHHH
Q 032332 125 DQLR 128 (143)
Q Consensus 125 dqlr 128 (143)
.+|.
T Consensus 108 qeLE 111 (118)
T 4ati_A 108 QELE 111 (118)
T ss_dssp ----
T ss_pred HHHH
Confidence 5553
No 211
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=29.80 E-value=39 Score=19.63 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 032332 54 ARHRYKTSVAALRAV 68 (143)
Q Consensus 54 AR~RYK~AvAALRa~ 68 (143)
+|.|++++.-|+||.
T Consensus 2 ~rrkWqKtgnAv~Al 16 (26)
T 2o5g_B 2 ARRKWQKTGHAVRAI 16 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999999999885
No 212
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=29.72 E-value=1e+02 Score=24.80 Aligned_cols=41 Identities=2% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHhhhccccC
Q 032332 99 IDKLEERASLLRKELAN--------------KNKYLKRLIDQLRDLITDISTWQS 139 (143)
Q Consensus 99 IekLEe~As~LRkEi~~--------------KN~~lK~LIdqlrdlI~DiS~Wqs 139 (143)
|+...++...++++|-. .+..|..+|+.|+..|+=.-.|..
T Consensus 301 i~~~~k~~~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~yv~~l~~~~~Gn~~Ws~ 355 (382)
T 3kb9_A 301 VEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHH 355 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 44444455556666543 467899999999999998887753
No 213
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=29.66 E-value=69 Score=28.27 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHhh
Q 032332 112 ELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 112 Ei~~KN~~lK~LIdqlrdlI~D 133 (143)
+|...-+.|+.-|+.|.+++.+
T Consensus 420 kl~~E~~~l~~~i~~l~~iL~~ 441 (470)
T 3ilw_A 420 RIIDDLAKIEAEIADLEDILAK 441 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3333344445555555555443
No 214
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.62 E-value=48 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
|..||+-...-.+||..|...++.|-.+|.+.-..|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666655555544444
No 215
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=29.38 E-value=85 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLIT 132 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~ 132 (143)
.+.|+.||+....||.-|.+.+ +.++..+++.|++=.
T Consensus 238 ~~~l~~~~~~l~~~~~~i~~~d~~a~~~~~~~~~~~~~ 275 (279)
T 2f1k_A 238 LKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNGDRD 275 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999776 678888888777643
No 216
>1t0c_A Insulin; type I beta-turn, BEND, type III' beta-turn, hormone/growth factor complex; NMR {Homo sapiens}
Probab=29.27 E-value=17 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.6
Q ss_pred cCCCCCCCCchhH
Q 032332 40 LDSSGGSGNSALD 52 (143)
Q Consensus 40 ~d~ggg~GggaLD 52 (143)
.+-|||+|.|+|.
T Consensus 10 velgggpgagslq 22 (31)
T 1t0c_A 10 VELGGGPGAGSLQ 22 (31)
T ss_dssp TSCCCSTTSSSCS
T ss_pred EEecCCCCccccc
Confidence 3458999988874
No 217
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=29.23 E-value=28 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCccc
Q 032332 57 RYKTSVAALRAVLTAIPNSHK 77 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~~k 77 (143)
-||+.|-+.|++.--|++..+
T Consensus 52 aYKNvig~rR~swRiissieq 72 (236)
T 3iqu_A 52 AYKNVVGGQRAAWRVLSSIEQ 72 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHH
Confidence 599999999999999987643
No 218
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=29.12 E-value=1.5e+02 Score=21.84 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
..|-.+|+.|-++-..|.+||......+..++..-+.|+.
T Consensus 138 g~dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~ 177 (322)
T 1u4q_A 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177 (322)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999888888875
No 219
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=29.11 E-value=78 Score=24.09 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~ 114 (143)
..++++|++||+....+.+++.
T Consensus 76 ~i~~~~v~~LE~~id~~~~~l~ 97 (177)
T 1woz_A 76 KIDEKYVKWLEERTVEYRKESG 97 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhhCC
Confidence 4678999999998887777763
No 220
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=29.00 E-value=88 Score=23.78 Aligned_cols=17 Identities=6% Similarity=-0.204 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRK 111 (143)
Q Consensus 95 DqaEIekLEe~As~LRk 111 (143)
|.+++.++=+++..+|.
T Consensus 259 d~~~l~~~~~~a~~~~~ 275 (298)
T 2pv7_A 259 DRQGFIDAFHKVRDWFG 275 (298)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 44444444444444443
No 221
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=28.79 E-value=81 Score=29.16 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYL-------KRLIDQLRDLI 131 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~l-------K~LIdqlrdlI 131 (143)
...-|++||+++...|.+||+.-+..| +.+++.|.++.
T Consensus 634 Lt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 678 (692)
T 2xcs_B 634 LTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIR 678 (692)
T ss_dssp GSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345577788888777777776554443 44555555543
No 222
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=28.72 E-value=1.3e+02 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
|.=-+.|..+|+++..||+-|.+--+..|.+++-.+.+.
T Consensus 17 P~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~ 55 (265)
T 2q12_A 17 PQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELS 55 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788999999999999988888888888888666554
No 223
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=28.24 E-value=93 Score=23.12 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhcccc
Q 032332 98 EIDKLEERASLLRKELANK----NKYLKRLIDQLRDLITDISTWQ 138 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~K----N~~lK~LIdqlrdlI~DiS~Wq 138 (143)
.|+..+++...+++++..- +..|..+|+.|+..|+=.-.|.
T Consensus 252 ~i~~~~~~~~~~~~~l~~~~~~~~~~l~~yv~~l~~~~~Gn~~Ws 296 (300)
T 1di1_A 252 MTREWETVHDEIVAEKIASPDGCSEAAKAYMKGLEYQMSGNEQWS 296 (300)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhhhHHHh
Confidence 3444455556666666542 6788999999999998887774
No 224
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=28.19 E-value=42 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 109 LRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 109 LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
|++||.+.|..--+.--+|.||..|+
T Consensus 20 LkkevkKL~~~A~q~kmdLHDLaEdL 45 (81)
T 3csx_A 20 LKKKVRKLNSKAGQMKMDLHDLAEGL 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 56666666666666677788888883
No 225
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.12 E-value=1.5e+02 Score=22.61 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRD 129 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrd 129 (143)
+.+.|++..+.+....+.++..-...++.+-.+|..
T Consensus 112 ~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 112 TSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666655555555444433
No 226
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=27.95 E-value=95 Score=26.15 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhhhccccC
Q 032332 98 EIDKLEERASLLRKELANK--NKYLKRLIDQLRDLITDISTWQS 139 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~K--N~~lK~LIdqlrdlI~DiS~Wqs 139 (143)
.|+..+++-..++++|... +..|..+|+.|+..|+=.-.|..
T Consensus 378 ~i~~~~~~F~~~~~~L~~~~~~~~l~~Yv~gL~~~i~Gn~~Ws~ 421 (433)
T 3v1v_A 378 VHNELQHSFEAAAADLAEACPLPPVLRFLRGVAAWVDGNHDWHR 421 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhhhhhc
Confidence 3666667777788887653 57899999999999998888854
No 227
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=27.88 E-value=73 Score=19.54 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 032332 94 SDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.+++|.+-|++....||.|+.
T Consensus 7 Vte~DIr~QE~rV~~aR~rL~e 28 (36)
T 2l2l_B 7 VTDEDIRKQEERVQQVRKKLEE 28 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999998764
No 228
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.87 E-value=1.3e+02 Score=19.50 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 032332 49 SALDEARHRYKTSVAALRAVLT 70 (143)
Q Consensus 49 gaLDeAR~RYK~AvAALRa~ia 70 (143)
|-.+||-.-|+.|+.-|--.+.
T Consensus 27 g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 27 TQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776655543
No 229
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=27.83 E-value=87 Score=25.89 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHH---hh-hHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA---NK-NKYLKRLIDQLRD 129 (143)
Q Consensus 98 EIekLEe~As~LRkEi~---~K-N~~lK~LIdqlrd 129 (143)
+++.|+|+|...|++|. .. |..+..++.+|-+
T Consensus 235 ~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~ 270 (325)
T 3e35_A 235 IAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEH 270 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 46789999998888765 55 7778888888765
No 230
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.81 E-value=95 Score=24.30 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
+.+||.....|..|+...-.--+.+.+.|-..+.|
T Consensus 137 V~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777655444444444444444443
No 231
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.72 E-value=1e+02 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKE 112 (143)
Q Consensus 97 aEIekLEe~As~LRkE 112 (143)
.+|+.|+|....|++|
T Consensus 122 ~~ie~l~eEi~~LkeE 137 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKE 137 (209)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 232
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=27.72 E-value=57 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhhHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKE---LANKNKYLKRLI 124 (143)
Q Consensus 96 qaEIekLEe~As~LRkE---i~~KN~~lK~LI 124 (143)
+.+|..|...+..|.|| ..+|=..+..|+
T Consensus 7 ~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 38 (82)
T 3tq7_B 7 NQQLVDLKLTVDGLEKERDFYFSKLRDIELIC 38 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554 334444444443
No 233
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=27.64 E-value=1.1e+02 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~L 123 (143)
|-+|+.....||+-+.-....+..|
T Consensus 214 l~~lrr~l~~lrr~l~p~~~vl~~L 238 (266)
T 2hn1_A 214 IHSLKREILAFRNAVWPLRDVLSFF 238 (266)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333
No 234
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=27.58 E-value=1.2e+02 Score=22.24 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKN-KYLKRLIDQLRD 129 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrd 129 (143)
.+.|++|+++...||.-|+..+ +.|+.++++-|+
T Consensus 242 ~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~~ 276 (281)
T 2g5c_A 242 MKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 276 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888887655 346666655544
No 235
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.41 E-value=67 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~ 122 (143)
.||+.-+++...|.++|.+-.+.+|.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443333333
No 236
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.40 E-value=49 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCc
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~ 75 (143)
..+|.|-|..|..-+.--|.=+-+...+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~ 35 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKS 35 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5788899999988887777766665544
No 237
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.37 E-value=1.3e+02 Score=21.10 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 104 ERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 104 e~As~LRkEi~~KN~~lK~LIdql 127 (143)
+..+.|++.++.|+.-++.|-+||
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667788888888888888888876
No 238
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=27.34 E-value=35 Score=26.92 Aligned_cols=25 Identities=28% Similarity=0.108 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
-++-|.++...+++||||+..++..
T Consensus 30 ~~~~ik~Il~~i~~lr~elC~~~~~ 54 (190)
T 2l3y_A 30 VGGLITHVLWEIVEMRKELCNGNSD 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5678999999999999999988763
No 239
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.33 E-value=73 Score=26.53 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 032332 97 VEIDKLEER 105 (143)
Q Consensus 97 aEIekLEe~ 105 (143)
+||.+||..
T Consensus 12 ~~~~~~e~~ 20 (323)
T 1lwu_C 12 EEVRILEQI 20 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555544
No 240
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.28 E-value=1.4e+02 Score=20.75 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
+-+|++||+.....+. |++.+..-+||
T Consensus 43 EKTIDDLEDkL~~eKE----K~k~i~eeLDq 69 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKE----ENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH----HHHHHHHHHHH
Confidence 4678899987754443 34444444444
No 241
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=27.11 E-value=95 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELA-------NKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 98 EIekLEe~As~LRkEi~-------~KN~~lK~LIdqlrdlI 131 (143)
|++||++...+|.+||+ +..+..+.+++.|.++.
T Consensus 440 e~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 480 (500)
T 3lpx_A 440 EHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIR 480 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56666666666666654 44555566666666654
No 242
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=27.05 E-value=81 Score=26.04 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHhhhH----
Q 032332 46 SGNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKL---EERASLLRKELANKNK---- 118 (143)
Q Consensus 46 ~GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekL---Ee~As~LRkEi~~KN~---- 118 (143)
.....|.+.|.+--.++++||..+..+... .. +.-...|..+ -++...||+.+...+.
T Consensus 90 ~~~~~L~~qR~~tD~a~~~l~~~~~~~~~~---------~~------~~l~~~l~~~~~~L~~L~~lR~~Vd~~~~~~~~ 154 (423)
T 4akk_A 90 LYAAECRAGAALVDEQLTRFYAALEPARDA---------AS------SALCWRIACAVWYLPQLAALRKRVRDREIAAEE 154 (423)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CC------HHHHHHHHHHHHHGGGHHHHHHHHHHTCSCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cC------HHHHHHHHHHHHHHHhHHHHHHHHhcCCCChhH
Confidence 336789999999999999999988765211 00 1111223332 3455678888765532
Q ss_pred ---HHHHHHHHHHHHHhhhc
Q 032332 119 ---YLKRLIDQLRDLITDIS 135 (143)
Q Consensus 119 ---~lK~LIdqlrdlI~DiS 135 (143)
+.-.+|+.|.+++.++.
T Consensus 155 a~~~Yt~lI~~LL~l~~~la 174 (423)
T 4akk_A 155 ATGQFSRIIRHLLNIVPQLN 174 (423)
T ss_dssp HHHHHHHHHHHHHTHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456777777776653
No 243
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=26.96 E-value=90 Score=23.08 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccc---cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEM---VSSPVDSVSRSDEVEIDKLEERASLLRKELANK 116 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~---~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~K 116 (143)
=|+=|..-|.-+.+-|.-...+. +....++ ..+ .+.|++.++.|-++...++++..-+
T Consensus 47 TdeQkqqir~L~~~~r~~~~~~~---~~~r~~l~~Li~a-----d~fDeaa~ral~~~~~~~~~e~~v~ 107 (145)
T 3itf_A 47 TEHQRQQMRDLMQQARHEQPPVN---VSELETMHRLVTA-----ENFDENAVRAQAEKMANEQIARQVE 107 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCC---HHHHHHHHHHHTC-----SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcc---HHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777776543331 1111112 222 2889999999999988888875443
No 244
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=26.83 E-value=1.7e+02 Score=22.11 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhcCC
Q 032332 52 DEARHRYKTSVA-------ALRAVLTAIPN 74 (143)
Q Consensus 52 DeAR~RYK~AvA-------ALRa~iaAI~~ 74 (143)
+|-|+|||.-.. .|-+-|.+|.+
T Consensus 44 ~eqR~rYK~~F~~dy~EYk~Lhaev~~v~~ 73 (140)
T 1xaw_A 44 DQQRQLYKRNFDTGLQEYKSLQSVLDEINK 73 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 678999998764 58888888865
No 245
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=26.70 E-value=1.1e+02 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKN-KYLKRLIDQLRD 129 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrd 129 (143)
+.|++++++...||+.|+.++ ..|..++.+-|+
T Consensus 275 ~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~ 308 (314)
T 3ggo_A 275 KAIEGFEKSLNHLKELIVREAEEELVEYLKEVKI 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566777777777777776655 455555554443
No 246
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=26.60 E-value=1.3e+02 Score=21.96 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 032332 105 RASLLRKELANKNKYLKRLID 125 (143)
Q Consensus 105 ~As~LRkEi~~KN~~lK~LId 125 (143)
....||..+.++...+...|+
T Consensus 222 ~p~~~~~~~~s~~~~~~~~l~ 242 (279)
T 2f1k_A 222 NPELGTMMATYNQRALLKSLQ 242 (279)
T ss_dssp CHHHHHHHHHHSHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHHHHHHHH
Confidence 344555555444444444443
No 247
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=26.56 E-value=71 Score=25.09 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhHH
Q 032332 91 VSRSDEVEIDKLEERASLLRKELANKNKY 119 (143)
Q Consensus 91 v~~~DqaEIekLEe~As~LRkEi~~KN~~ 119 (143)
+.+.++.|.++|++-+..||+++..-.+.
T Consensus 281 l~~l~~~e~~~l~~s~~~l~~~~~~~~~~ 309 (314)
T 1mld_A 281 IGKISPFEEKMIAEAIPELKASIKKGEEF 309 (314)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999998754433
No 248
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.53 E-value=1.3e+02 Score=24.19 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHH----HHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 51 LDEARHRY----KTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 51 LDeAR~RY----K~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~L 123 (143)
|||+|..+ |.|-++=|.+++-.-+-.|-.++. ++-|+.||-+.-.|-.+|.+....+|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG-------------QKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 249
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=26.44 E-value=80 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 64 ALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 64 ALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
.|+..|..|-+| +..++|-.+..+...+||++|.+.+.
T Consensus 11 ~l~~~i~~ir~~-----------------~~~~~e~~~i~~e~~~ir~~l~~~~~ 48 (618)
T 1w63_A 11 RLRELIRTIRTA-----------------RTQAEEREMIQKECAAIRSSFREEDN 48 (618)
T ss_dssp CHHHHHHHHTTC-----------------CCHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred cHHHHHHHHHcC-----------------CChHHHHHHHHHHHHHHHHHhhCCCH
Confidence 477778888777 44567778888889999999976543
No 250
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.30 E-value=1.2e+02 Score=21.23 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKN 117 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN 117 (143)
-|++|.++...|+||+..-.
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655433
No 251
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.06 E-value=1e+02 Score=20.67 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLK 121 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK 121 (143)
-|..||++-+.--.||++-|+.||
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 252
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=25.55 E-value=86 Score=29.01 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcCCc
Q 032332 60 TSVAALRAVLTAIPNS 75 (143)
Q Consensus 60 ~AvAALRa~iaAI~~~ 75 (143)
.|+.-+..+|.-|-++
T Consensus 587 ~a~~~iD~vI~iIr~s 602 (692)
T 2xcs_B 587 IALDHIDEIISTIRES 602 (692)
T ss_dssp HHHHTHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHhC
Confidence 3444444566555444
No 253
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.53 E-value=14 Score=30.72 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
+++|..|++....|+++|.. |+..|.+|...
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~----L~~~i~~l~~~ 47 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVN----LKEKVAQLEAQ 47 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 67777777777777666663 45555555443
No 254
>1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qt2_C* 3b5k_A
Probab=25.48 E-value=1.1e+02 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.466 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHhhhcc
Q 032332 98 EIDKLEERASLLRKELANKNK-------YLKRLIDQLRDLITDIST 136 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~-------~lK~LIdqlrdlI~DiS~ 136 (143)
-+|+|=+-.|.||+-|..+.+ .||+.||.|++.|.=|.+
T Consensus 60 ~v~klFQNlsliK~~Id~QkkkCg~ER~rVkqFldyLqeFl~vint 105 (108)
T 1hul_A 60 TVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQEFLGVMNT 105 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 478899999999999887654 599999999999987754
No 255
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.40 E-value=1.5e+02 Score=21.87 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhhhcc
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKY---LKRLIDQLRDLITDIST 136 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~---lK~LIdqlrdlI~DiS~ 136 (143)
..+..||+-|..+....-+-|+.|+.. +|.-|.|++..+..|.|
T Consensus 20 ~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~v 66 (110)
T 2v4h_A 20 HMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPV 66 (110)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566668888888887777777777654 44556666665555544
No 256
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=25.33 E-value=1.2e+02 Score=22.42 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
|+..|.+.|+.....+++++.-|..|+.=+.+|.++
T Consensus 177 d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~ 212 (251)
T 2fic_A 177 DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNS 212 (251)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888889988888887776666444
No 257
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.29 E-value=67 Score=19.57 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~ 115 (143)
....|+.||++...|...|..
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888776653
No 258
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=25.23 E-value=70 Score=21.20 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
+.+|+.||++...|++.+.
T Consensus 8 ~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 8 QTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555543
No 259
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=25.16 E-value=1.5e+02 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
|.=-+-|..+|+++..||+-|.+--+..|.+++-++++
T Consensus 17 P~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~ 54 (385)
T 2q13_A 17 PQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNEL 54 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678889999999999998888888887777766554
No 260
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.15 E-value=1.2e+02 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
--+||..-.++..||.||-.-+
T Consensus 9 i~~Ie~v~~r~r~l~~ell~~~ 30 (89)
T 2d9d_A 9 ILKIEKVLKRMREIKNELLQAQ 30 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999997655
No 261
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=25.05 E-value=1.7e+02 Score=22.20 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
.-|+..+.+.|+.....++++..-|..|+.=+-+|.++-
T Consensus 156 ~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~ 194 (237)
T 4avm_A 156 KKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSR 194 (237)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999998877776654
No 262
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.94 E-value=82 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLI 131 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI 131 (143)
+.+++.|+.+-+.+-|+|..|+ .....|+.++++|=
T Consensus 41 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~ 77 (421)
T 1ses_A 41 KKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALG 77 (421)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3567777777777777776433 33445555555443
No 263
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.88 E-value=1.8e+02 Score=22.73 Aligned_cols=12 Identities=50% Similarity=0.734 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 032332 96 EVEIDKLEERAS 107 (143)
Q Consensus 96 qaEIekLEe~As 107 (143)
|.+|++||+...
T Consensus 141 qkeiD~LEDeL~ 152 (175)
T 3mud_A 141 EKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 264
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.73 E-value=1.6e+02 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 102 LEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 102 LEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
|+.+...|+.|....+..|..|+.+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444443
No 265
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=24.67 E-value=1.6e+02 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhh
Q 032332 97 VEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~Di 134 (143)
.++..||.+...+..+++.|. +..+-|.++=+++|.-|
T Consensus 16 ~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~I 54 (264)
T 2zd7_A 16 LGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEI 54 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 445555555555555665555 34445777778888765
No 266
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.58 E-value=1.4e+02 Score=19.00 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEE-RASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 93 ~~DqaEIekLEe-~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-.+..|.|++.+ =..++|+||.+ .=..+||-+|..+.
T Consensus 3 ~~~~~dle~~KqEIL~E~RkElqK---~K~EIIeAi~~El~ 40 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKELQK---VKEEIIEAFVQELR 40 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345678888854 46789999964 33456777766543
No 267
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.41 E-value=22 Score=26.86 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
.-+-.++|++...|++.+..|...|..|=+||.+|
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999999999988888888888876
No 268
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=24.23 E-value=2.2e+02 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH
Q 032332 101 KLEERASLLRKELANKNKYLKR 122 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~ 122 (143)
.|+|+|...|+++..--+.+++
T Consensus 218 ~L~e~Ae~~e~~i~~l~e~~~~ 239 (252)
T 3gaa_A 218 LLEEQVKALDEQIKKIEEQYKE 239 (252)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888777776554444443
No 269
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=24.12 E-value=2.1e+02 Score=20.84 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKN---KYLKRLIDQL 127 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN---~~lK~LIdql 127 (143)
+|++|..|...+..+..-|.-.-.. ..+. + ...|.++++.|.+.-..|..+|.... ..+..|-.++
T Consensus 127 ~d~l~~qF~~~a~~~~~Wl~~~e~~--------l~~~-~--~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~ 195 (250)
T 1quu_A 127 IDQLHLEFAKRAAPFNNWMEGAMED--------LQDM-F--IVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEV 195 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--------TTCC-C--CCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH--------hccc-c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777776666666432211 1111 0 13455688888888888885444443 4454555666
Q ss_pred HHHHh
Q 032332 128 RDLIT 132 (143)
Q Consensus 128 rdlI~ 132 (143)
..||.
T Consensus 196 ~~l~~ 200 (250)
T 1quu_A 196 EKVIQ 200 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 270
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.06 E-value=2.1e+02 Score=20.71 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhH
Q 032332 52 DEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNK 118 (143)
Q Consensus 52 DeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~ 118 (143)
|..=.+.|.-|..||+=|-.|- ..++..|..|+.|.+.|--||.....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~-------------------~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMK-------------------TESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555678888999998877662 23578999999999999999998753
No 271
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.92 E-value=41 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 032332 100 DKLEERASLLRKELANKNKYLKRL 123 (143)
Q Consensus 100 ekLEe~As~LRkEi~~KN~~lK~L 123 (143)
++|+.+...|+.++..-.+.+..+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 272
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=23.89 E-value=50 Score=19.51 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLR 110 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LR 110 (143)
.+++++=+||-||.-+||
T Consensus 11 ~~~eekEDkLAqRLRALR 28 (29)
T 3ggz_E 11 NVDDEKEDKLAQRLRALR 28 (29)
T ss_pred CccchhhHHHHHHHHHHc
Confidence 477888899999999998
No 273
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=23.86 E-value=59 Score=22.12 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKEL 113 (143)
Q Consensus 98 EIekLEe~As~LRkEi 113 (143)
||.|||...--|-||+
T Consensus 42 EIQKL~~EL~glskef 57 (65)
T 2yf2_A 42 EIQKLKVELQGLSKEF 57 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHH
Confidence 4444554444444444
No 274
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.85 E-value=1.4e+02 Score=26.27 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHH----HHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 032332 52 DEARHRY----KTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLI 124 (143)
Q Consensus 52 DeAR~RY----K~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LI 124 (143)
-+.-.+| |..+.-|.-.|.-|++.... +++....--.+ -+-+|..|.-+++.....+++|+....++|..+
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~-~~~~i~~Iq~s-lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT-MYQYVNMIDNK-LVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566 45567888888888765321 11110000000 022444555556666666677766666666555
No 275
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.69 E-value=2e+02 Score=23.89 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELA 114 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~ 114 (143)
.+|..|+++...+++.|.
T Consensus 26 ~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555554444443
No 276
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.65 E-value=1.6e+02 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
+.|++.|+.+-+.+-|+|..
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777778774
No 277
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=23.40 E-value=66 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALR 66 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALR 66 (143)
..-|-.||-+++.|-.|+.
T Consensus 28 apEl~~A~dKl~~A~~Am~ 46 (98)
T 4fm3_A 28 VAELKLAQDKYAAAQIAMT 46 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3467788888888777663
No 278
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.17 E-value=1.1e+02 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.|++|-++.-.|.+-...-+.|++.+.+.||+-..++
T Consensus 68 rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~ 104 (390)
T 1deq_A 68 RINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA 104 (390)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555555544555667777777777665543
No 279
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=23.08 E-value=3.5e+02 Score=23.72 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHhhh
Q 032332 93 RSDEVEIDKLEERASLLRKELANKN-----KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN-----~~lK~LIdqlrdlI~Di 134 (143)
..+++|.+++++....+++-|...+ ..++.-++.|+.+...|
T Consensus 574 ~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i 620 (675)
T 3d2f_A 574 FASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNII 620 (675)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 5678899999999988887764321 23444455555544433
No 280
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.03 E-value=2e+02 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhcC
Q 032332 57 RYKTSVAALRAVLTAIP 73 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~ 73 (143)
.-..+|..|++....+.
T Consensus 24 ~Lq~~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 24 LLREEVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34567777888777775
No 281
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=22.92 E-value=1.4e+02 Score=18.26 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
|-..+||....+.+||+ .+|-||.|+
T Consensus 10 eqaaieeeiqaikeeia----aikyliaqi 35 (36)
T 1bb1_B 10 EQAAIEEEIQAIKEEIA----AIKYLIAQI 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 33445666777777775 356666664
No 282
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=22.85 E-value=1.1e+02 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032332 56 HRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKEL 113 (143)
Q Consensus 56 ~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi 113 (143)
.|-|.-..+||.+++||-+-..... +. +.+.+++-.|=......|||.
T Consensus 17 akd~~r~~~lR~l~aai~~~e~~~~----~~------~lt~~~l~~li~~~~K~~ke~ 64 (148)
T 1ng6_A 17 NREKDKLTVVRMVKASLQNEAIKLK----KD------SLTEDEELTVLSRELKQRKDS 64 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTT----SS------CCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhccC----CC------CCCHHHHHHHHHHHHHHHHHH
Confidence 3456667899999999988744321 13 455555555444444444443
No 283
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.84 E-value=78 Score=22.01 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELA 114 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~ 114 (143)
++++..|+++...||+||.
T Consensus 13 ~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555554
No 284
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=22.77 E-value=2.2e+02 Score=20.68 Aligned_cols=72 Identities=8% Similarity=0.149 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 032332 51 LDEARHRYKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDL 130 (143)
Q Consensus 51 LDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdl 130 (143)
||++.++|...++-+-+-|.-.-.- ..+ .. +...|-++|+.|-+.-..+.++|......+..++..-++|
T Consensus 12 Le~l~~~F~~~~~e~~~Wl~e~e~~--l~~----~~----~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L 81 (250)
T 1quu_A 12 LEHLAEKFRQKASTHETWAYGKEQI--LLQ----KD----YESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQEL 81 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHH--HHC----CC----CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH--hcC----CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777776665554322111 011 11 1135889999999999999999999999999999888888
Q ss_pred Hh
Q 032332 131 IT 132 (143)
Q Consensus 131 I~ 132 (143)
|.
T Consensus 82 ~~ 83 (250)
T 1quu_A 82 NE 83 (250)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 285
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=22.73 E-value=1.8e+02 Score=25.60 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHhh
Q 032332 93 RSDEVEIDKLEERASLL------RKELANKNKYLKRLIDQLRDLITD 133 (143)
Q Consensus 93 ~~DqaEIekLEe~As~L------RkEi~~KN~~lK~LIdqlrdlI~D 133 (143)
..+++||+++-+++..+ ++|....--.+..||-++|+.|.|
T Consensus 523 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~ 569 (675)
T 3d2f_A 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE 569 (675)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999987777654 333333333578888899998876
No 286
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=22.70 E-value=1.5e+02 Score=18.50 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 101 KLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
.|+..+..++.....-+..|..|..++..| .+.|+..
T Consensus 9 ~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l---~~~W~G~ 45 (94)
T 3fav_B 9 GIEAAASAIQGNVTSIHSLLDEGKQSLTKL---AAAWGGS 45 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---GGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccCcH
Confidence 345555555544444344444444444443 2357653
No 287
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=22.65 E-value=74 Score=25.41 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.++.|.++|++-+..||+.|+.
T Consensus 269 ~L~~~E~~~l~~s~~~lk~~i~~ 291 (294)
T 2x0j_A 269 KLSDEEIEKLRNSAKILRERLEE 291 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999988764
No 288
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.62 E-value=1.5e+02 Score=22.29 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 032332 90 SVSRSDEVEIDKLEERAS 107 (143)
Q Consensus 90 ~v~~~DqaEIekLEe~As 107 (143)
.|...+++||++|.+-.+
T Consensus 55 r~g~Lt~~ei~~l~~~i~ 72 (152)
T 3iz6_M 55 RAGELSAEEMDRLMAVVH 72 (152)
T ss_dssp BTTTSCHHHHHHHHHHHH
T ss_pred EeCcCCHHHHHHHHHHHH
Confidence 345778999999987763
No 289
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=22.50 E-value=48 Score=22.35 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
..|-+++++|.+....||+|+..+..-|-.-...|+.-+
T Consensus 13 ~~~~~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yc 51 (73)
T 1got_G 13 IEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYV 51 (73)
T ss_dssp ---CTHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHH
Confidence 345678999999999999999887765555555555444
No 290
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=22.46 E-value=98 Score=22.72 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHHHHHHH
Q 032332 91 VSRSDEVEIDKLEERAS 107 (143)
Q Consensus 91 v~~~DqaEIekLEe~As 107 (143)
|....++||++|.+-.+
T Consensus 45 ~~~Lt~~ei~~l~~~i~ 61 (126)
T 2vqe_M 45 VKDLTEAEVVRLREYVE 61 (126)
T ss_dssp GGGCCHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHH
Confidence 45678899999888766
No 291
>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A
Probab=22.41 E-value=91 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHH------HHHHHHHH
Q 032332 93 RSDEVEIDKLEERA------SLLRKELA 114 (143)
Q Consensus 93 ~~DqaEIekLEe~A------s~LRkEi~ 114 (143)
..++++|++|++.+ ..|++.+.
T Consensus 173 r~~~~~i~~l~~~~ww~~~~~~i~~~~~ 200 (220)
T 4hur_A 173 RFSDGVIEEWLALQWWNLDMKIINENLP 200 (220)
T ss_dssp SSCHHHHHHHHHHCGGGSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 47888999888765 45555444
No 292
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=22.36 E-value=21 Score=30.39 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q 032332 101 KLEERASLLRKELAN 115 (143)
Q Consensus 101 kLEe~As~LRkEi~~ 115 (143)
.|-+|...+||.|+.
T Consensus 79 ~L~~rI~~iRr~~a~ 93 (389)
T 3a5i_A 79 ELLGRIRSIRKKFAQ 93 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 588899999998875
No 293
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.35 E-value=1.2e+02 Score=25.50 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCccccccccccCCCCCCCCCCCHHHHHHHH----HHHHHHHHHHHhhh
Q 032332 58 YKTSVAALRAVLTAIPNSHKAKSFEMVSSPVDSVSRSDEVEIDKLE----ERASLLRKELANKN 117 (143)
Q Consensus 58 YK~AvAALRa~iaAI~~~~ka~~~e~~~s~v~~v~~~DqaEIekLE----e~As~LRkEi~~KN 117 (143)
+..|+..+|.+|-.|+=. .+++ +.+.+|+.+|= |=+..||-|+++|.
T Consensus 130 f~eAl~~Fr~iL~~i~l~-------~v~~------~~e~~e~~eli~icrEYilal~iEl~Rr~ 180 (325)
T 3mv2_A 130 PDIAIECFREAIYRITLL-------MVDD------AEDEKLAHKILETAREYILGLSIELERRS 180 (325)
T ss_dssp HHHHHHHHHHHHHHHHTC-------CBCS------SHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhee-------eecc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345888999999998766 3344 44555555443 44567888988875
No 294
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.34 E-value=86 Score=20.24 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
=+|++-||+-...|.+||..-+
T Consensus 27 ~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 27 MDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999987643
No 295
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.26 E-value=2e+02 Score=25.23 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLI--------DQLRDLITDI 134 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LI--------dqlrdlI~Di 134 (143)
+.+++++++....||+....-...+..++ +.||++|..+
T Consensus 365 ~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~l 411 (695)
T 2j69_A 365 KKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNL 411 (695)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655555444444444 3455555554
No 296
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.24 E-value=2e+02 Score=21.00 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.8
Q ss_pred HHHHhc
Q 032332 67 AVLTAI 72 (143)
Q Consensus 67 a~iaAI 72 (143)
++++|+
T Consensus 59 aVLaAL 64 (138)
T 3hnw_A 59 TDMMYL 64 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 297
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.05 E-value=1.2e+02 Score=21.98 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 032332 98 EIDKLEERASLLRK 111 (143)
Q Consensus 98 EIekLEe~As~LRk 111 (143)
.++-||++...|.+
T Consensus 75 ~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 75 GLRSIEWDLEDLEE 88 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 298
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=22.04 E-value=83 Score=18.48 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCc-------cccccccccCCCCCCCCCCCHHHHHHHHHH
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIPNS-------HKAKSFEMVSSPVDSVSRSDEVEIDKLEER 105 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~~~-------~ka~~~e~~~s~v~~v~~~DqaEIekLEe~ 105 (143)
+..|..-..||......|+..+..+.+. ..|.+|.+... ..+++||+.|-.-
T Consensus 24 gp~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Mp~~~~~~~------~ls~~ei~~l~~y 82 (87)
T 2zxy_A 24 GPSLKKIAQAYAGKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTMLK------GLSDAELKALADF 82 (87)
T ss_dssp SCCHHHHHHHTTTCHHHHHHHHTTCSCCSSCGGGHHHHGGGGGGGG------GCCHHHHHHHHHH
T ss_pred CCChHHHHHHhcCCHHHHHHHHhcccccccCCCCCCCCCCcccccc------CCCHHHHHHHHHH
Confidence 4456666666754456677777665432 23444411112 4567788766543
No 299
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.01 E-value=2.4e+02 Score=20.68 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
-+.+.|++..+.+....+.++......|+.+-.+|
T Consensus 94 ~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 94 YISKQEYDQALADAQQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888877776655555444444
No 300
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.95 E-value=2.3e+02 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 93 RSDEVEIDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
..|..+.+.+|+|...|++=-.+-..-+..|+..
T Consensus 118 e~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 118 AADPEALDRVEARLSALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 5789999999999999986333223334444433
No 301
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=21.89 E-value=2.2e+02 Score=21.16 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
++||+++.+++...-+.+.+.-.+|..+|.+.
T Consensus 40 n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 40 NEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788887777666666655555555544443
No 302
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=21.83 E-value=1.9e+02 Score=19.51 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHHHH
Q 032332 114 ANKNKYLKRLIDQLRD 129 (143)
Q Consensus 114 ~~KN~~lK~LIdqlrd 129 (143)
...|.-|..||.||-+
T Consensus 35 s~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 35 SSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred cccchHHHHHHHHhCC
Confidence 4557888888888744
No 303
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.81 E-value=90 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032332 96 EVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~ 115 (143)
-+|+.-|++-...|..||..
T Consensus 26 fdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 26 MDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 46888999999999999875
No 304
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=21.64 E-value=2e+02 Score=21.83 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=20.8
Q ss_pred hHHHHHH-HHHHHHHHhhhccccCCC
Q 032332 117 NKYLKRL-IDQLRDLITDISTWQSPC 141 (143)
Q Consensus 117 N~~lK~L-IdqlrdlI~DiS~Wqspc 141 (143)
+..|..+ |+.|+..|+=.-.|..-|
T Consensus 287 ~~~v~~y~v~~l~~~~~G~~~W~~~s 312 (337)
T 1ps1_A 287 REALERYRTDAVRTVIRGSYDWHRSS 312 (337)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 6778899 999999999888886544
No 305
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=21.63 E-value=1.2e+02 Score=26.87 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCcc
Q 032332 61 SVAALRAVLTAIPNSH 76 (143)
Q Consensus 61 AvAALRa~iaAI~~~~ 76 (143)
|+.-+-.+|.-|-++.
T Consensus 381 a~~~id~vI~iIr~s~ 396 (496)
T 2nov_A 381 VISILDEVIALIRASE 396 (496)
T ss_dssp HHHSHHHHHHHHTTSS
T ss_pred HHHHHhhHHHHHHhCC
Confidence 3334456677677765
No 306
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.60 E-value=84 Score=21.39 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032332 96 EVEIDKLEERASLLRKELANKN 117 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN 117 (143)
=+|++-||+-...|.+||..-+
T Consensus 45 ~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3588889999999999987643
No 307
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.60 E-value=1.9e+02 Score=19.36 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHhhhHHHHHHH
Q 032332 96 EVEIDKLEERA---SLLRKELANKNKYLKRLI 124 (143)
Q Consensus 96 qaEIekLEe~A---s~LRkEi~~KN~~lK~LI 124 (143)
+.|+.+|++.. ...|+|++.++..|-.=.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777654 478888888876654433
No 308
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=21.53 E-value=88 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.++.|.++|++-+..||+++..
T Consensus 298 ~l~~~e~~~l~~s~~~l~~~~~~ 320 (327)
T 1y7t_A 298 EINEFARKRMEITAQELLDEMEQ 320 (327)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 309
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.53 E-value=1.4e+02 Score=21.42 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQ 126 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdq 126 (143)
.++|.++...|.+++...-.-++.|.+.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~ 34 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRED 34 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444444444444444444433
No 310
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=21.50 E-value=78 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCC
Q 032332 94 SDEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSPC 141 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqspc 141 (143)
.+...+.+|.+....+=+|. .-...+=.||+.+++.+.++ +..||
T Consensus 90 L~~~~~~~L~~~L~~~~~e~-~G~~mif~lv~~lqe~l~~~--~~p~~ 134 (137)
T 1ukx_A 90 LSNESVNLLKSHLEELAKKQ-CGEVMIFELAHHVQSFLSEH--NKSGP 134 (137)
T ss_dssp SSSSHHHHHHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHHH--CCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCEEhHHHHHHHHHHHHhc--CCCCC
Confidence 45566677766665554444 24456889999999999987 45555
No 311
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=21.48 E-value=1.8e+02 Score=21.69 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 032332 92 SRSDEVEIDKLEERASLLRK 111 (143)
Q Consensus 92 ~~~DqaEIekLEe~As~LRk 111 (143)
...+++||+++-+++..+..
T Consensus 136 ~~Ls~eei~~mi~~a~~~~~ 155 (182)
T 3n8e_A 136 GGLSKDDIENMVKNAEKYAE 155 (182)
T ss_dssp CCCCHHHHHHHHHHHHHSHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 47899999999888876544
No 312
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=21.39 E-value=1.4e+02 Score=19.22 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032332 101 KLEERASLLRKELANKNKYLKRLIDQLRDLI 131 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LIdqlrdlI 131 (143)
+||-....|++-|.+-|+.+..|.+-++-|-
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la 31 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLT 31 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888899999999999998887776653
No 313
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.39 E-value=91 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCC
Q 032332 99 IDKLEERASLLRKELANKNKYLKRLIDQLRDLITDISTWQSP 140 (143)
Q Consensus 99 IekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~DiS~Wqsp 140 (143)
+.+||.....|=.+|.......|.+-+.|...+.++...++|
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345555555565566555555566666666666666544443
No 314
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.37 E-value=1.9e+02 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYLKRLIDQL 127 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~lK~LIdql 127 (143)
++||+.+|.+...|++-+..|-...+..|-.|
T Consensus 10 ~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 10 KKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777766666666655555444
No 315
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.32 E-value=1.9e+02 Score=20.41 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELANKNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN~~lK~LIdqlrdlI~ 132 (143)
-..=++.|++|...|++.+..-.+.++.+-+++..+..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~ 133 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVAR 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999888887777766665443
No 316
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.31 E-value=1.6e+02 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 101 KLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 101 kLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
.++++...|..+|-..-+.++..|..|.
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~ 73 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQ 73 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444444444444443
No 317
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=21.25 E-value=2.2e+02 Score=20.98 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhh
Q 032332 95 DEVEIDKLEERASLLRKELANKN-KYLKRLIDQLRDLITDI 134 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~KN-~~lK~LIdqlrdlI~Di 134 (143)
++..+++..+++..+.+-|..++ ..+..||++.++++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l 265 (335)
T 3gon_A 225 NQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGL 265 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence 34445555666777777776655 45788888877777765
No 318
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=21.17 E-value=1.8e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 032332 105 RASLLRKELANKNKYLKRLIDQLRDLITDI 134 (143)
Q Consensus 105 ~As~LRkEi~~KN~~lK~LIdqlrdlI~Di 134 (143)
.+...|.||+. .+ -..|.+||+||..+
T Consensus 199 ~a~~~r~eL~~-tk--~~~v~~Lr~LI~e~ 225 (279)
T 3qwe_A 199 EANARQQDLEI-AK--QRIVSHVRKLVFQG 225 (279)
T ss_dssp HHHHHHHHHHH-HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hh--HHHHHHHHHHHHHH
Confidence 56678888864 22 67889999999753
No 319
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=21.12 E-value=2.1e+02 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 032332 95 DEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 95 DqaEIekLEe~As~LRkEi~~ 115 (143)
--.+|..+|.+|..++.+|..
T Consensus 61 ~~~~I~~lE~~aD~i~~~i~~ 81 (227)
T 3l39_A 61 YYKQIKDMEREGDRLTHLIFD 81 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999987
No 320
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.00 E-value=57 Score=20.26 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032332 96 EVEIDKLEERASLLR 110 (143)
Q Consensus 96 qaEIekLEe~As~LR 110 (143)
+++|+.+++|...||
T Consensus 25 Eedi~~MqsRLaALR 39 (40)
T 2xze_Q 25 EEALEAMQSRLATLR 39 (40)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 457999999999998
No 321
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5
Probab=20.90 E-value=82 Score=23.83 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 032332 57 RYKTSVAALRAVLTAIPNS 75 (143)
Q Consensus 57 RYK~AvAALRa~iaAI~~~ 75 (143)
.|...++|||..+-++-..
T Consensus 26 ~~~~~~~~~r~l~d~~~~~ 44 (216)
T 2ov9_A 26 AVDRATDAARRVVDALLRT 44 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 4777899999999877433
No 322
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=20.88 E-value=45 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=17.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Q 032332 43 SGGSGNSALDEARHRYKTSVAALRAVLTAIPNSHKAKSFE 82 (143)
Q Consensus 43 ggg~GggaLDeAR~RYK~AvAALRa~iaAI~~~~ka~~~e 82 (143)
||+++.++.-..+.-|+ .++.+|..+..++.+..|-
T Consensus 8 ~~~~~~~~~p~~~~~~~----~~~~il~~L~~~~~s~~F~ 43 (166)
T 3fkm_X 8 SSGRENLYFQGNKQWYL----LANQLILSLSKYEGGHIFE 43 (166)
T ss_dssp ---------CTTHHHHH----HHHHHHHHHTTSTTGGGGS
T ss_pred CCCCCcCCCcccHHHHH----HHHHHHHHHHhCCCChhhc
Confidence 44444555554444443 5677777888887777775
No 323
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=20.80 E-value=1e+02 Score=29.26 Aligned_cols=30 Identities=43% Similarity=0.641 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHh
Q 032332 103 EERASLLRKELAN--------KNKYLKRLIDQLRDLIT 132 (143)
Q Consensus 103 Ee~As~LRkEi~~--------KN~~lK~LIdqlrdlI~ 132 (143)
=|..|.||+|+++ ||.|.-..|+...|||.
T Consensus 63 fe~isqlree~ankaiknp~kknqyfsdfi~ksndlin 100 (876)
T 4dvy_P 63 FDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLIN 100 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHhhhcccccc
Confidence 3568999999975 68999999999999995
No 324
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=20.74 E-value=1.2e+02 Score=24.24 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 032332 93 RSDEVEIDKLEERASLLRKELAN 115 (143)
Q Consensus 93 ~~DqaEIekLEe~As~LRkEi~~ 115 (143)
+.++.|-++|++-+..||+++..
T Consensus 292 ~L~~~E~~~l~~s~~~l~~~~~~ 314 (321)
T 3p7m_A 292 EISDKEREQLQVSINAIKDLNKA 314 (321)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999998864
No 325
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=20.70 E-value=1.8e+02 Score=21.92 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 032332 94 SDEVEIDKLEERASLLRKELA 114 (143)
Q Consensus 94 ~DqaEIekLEe~As~LRkEi~ 114 (143)
..+.|++..|+.-...|+++.
T Consensus 162 ~~eeEl~~A~~~fe~~~e~~~ 182 (240)
T 2z0v_A 162 IPDEEVRQAVEKFEESKELAE 182 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 347777777766666666543
No 326
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=20.69 E-value=64 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=17.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcC
Q 032332 48 NSALDEARHRYKTSVAALRAVLTAIP 73 (143)
Q Consensus 48 ggaLDeAR~RYK~AvAALRa~iaAI~ 73 (143)
-|.|.+-+ +.++..||.-|..-+
T Consensus 32 ~~~lt~~q---~~~l~~lR~~l~~~~ 54 (320)
T 3q8g_A 32 PGNLTKEQ---EEALLQFRSILLEKN 54 (320)
T ss_dssp TTCCCHHH---HHHHHHHHHHHHHTT
T ss_pred CCCCCHHH---HHHHHHHHHHHHhcC
Confidence 45666654 679999999998765
No 327
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=20.54 E-value=21 Score=30.63 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=0.0
Q ss_pred ccccccCC----CCCCCCchhHHHHHHHHHHH
Q 032332 35 ANNHHLDS----SGGSGNSALDEARHRYKTSV 62 (143)
Q Consensus 35 ~~~hh~d~----ggg~GggaLDeAR~RYK~Av 62 (143)
||.||+-. |||+| ++-- |||.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~---~~~~~~ 30 (414)
T 3hwk_A 4 HHHHHMGTLEAQTQGPG--SMTG---PLAAAR 30 (414)
T ss_dssp --------------------------------
T ss_pred cccccccceeCCCCCCC--ceee---eHHHHH
Confidence 44455433 66666 2211 777654
No 328
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=20.53 E-value=67 Score=24.45 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 032332 50 ALDEARHRYKTSVAALR 66 (143)
Q Consensus 50 aLDeAR~RYK~AvAALR 66 (143)
.|+.|+.+|-.+..-+.
T Consensus 158 ~l~KaK~~Y~~~c~e~e 174 (312)
T 3abh_A 158 EVEAAKKAHHAACKEEK 174 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667777766654443
No 329
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.12 E-value=1.6e+02 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHh
Q 032332 98 EIDKLEERASLLRKELANKN-------KYLKRLIDQLRDLIT 132 (143)
Q Consensus 98 EIekLEe~As~LRkEi~~KN-------~~lK~LIdqlrdlI~ 132 (143)
|++||++....|++||+.-+ +..+.+++.|.++..
T Consensus 697 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~ 738 (767)
T 2xkj_E 697 EEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAK 738 (767)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 46677777777776666444 335555666665543
No 330
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=20.09 E-value=1.5e+02 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032332 97 VEIDKLEERASLLRKELANKNKYLKRLIDQLR 128 (143)
Q Consensus 97 aEIekLEe~As~LRkEi~~KN~~lK~LIdqlr 128 (143)
++++.||++...|.+.|-.+. .+-.||+.+.
T Consensus 22 ~ql~~l~~~l~~l~~~LP~~~-em~~LL~~i~ 52 (147)
T 2rjz_A 22 AQMKEMEESFGALLRQLPSDT-EVPGLLEDIT 52 (147)
T ss_dssp HHHHHHHHHHHHHHHTTTGGG-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChh-HHHHHHHHHH
Confidence 444444444444444444322 2334444443
No 331
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=20.04 E-value=78 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 032332 96 EVEIDKLEERASLLRKELANKNKYL 120 (143)
Q Consensus 96 qaEIekLEe~As~LRkEi~~KN~~l 120 (143)
..+.++|+++...+++++...+...
T Consensus 16 ~~~~~~l~~~l~~~~~~l~~~~~~~ 40 (268)
T 4ew8_A 16 PRGSHMLQSALADRSAALAEAERLK 40 (268)
T ss_dssp ---------CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444444443333
Done!