BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032333
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 178 bits (452), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 104/135 (77%)
Query: 8 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 67
A +GM V D+CK F+E+K K+ HR+IV+KI+EK K V V+KVG + YE+ AA LP D
Sbjct: 4 AASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPAD 63
Query: 68 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 127
+CRYA++DFDFVT +NC+KSKIFFIAW P +++R+KM+YA+SKD +R LDGI E+QA
Sbjct: 64 ECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 128 TDPTEMGFDVIMDRA 142
TDPTEM DV RA
Sbjct: 124 TDPTEMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 10 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDC 69
+G+ V+D+C F E+K HRY+ FK++ + V V+ VGG YED + LP+ DC
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 70 RYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATD 129
RYA+FD++F VD +++KI FI WAP ++ I++KM+Y ++KD +++ L GI EVQATD
Sbjct: 61 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 130 PTEMGFDVIMDRAK 143
E+ D + +RAK
Sbjct: 120 AAEISEDAVSERAK 133
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 11 GMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCR 70
G+ V+D+C F E+K HRY+ FK++ + V V+ VGG YED + LP+ DCR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 71 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDP 130
YA+FD++F VD +++KI FI WAP ++ I++KM+Y ++KD +++ L GI EVQATD
Sbjct: 62 YAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 131 TEMGFDVIMDRAK 143
E+ D + +RAK
Sbjct: 121 AEISEDAVSERAK 133
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 7 MATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPD 66
M+ +G+ V+ EC +F E+K K RY+VFK+++ + V+K + ++ LP+
Sbjct: 1 MSFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPE 59
Query: 67 DDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQ 126
DCRYA++DF+F + R +KI FI+W+P + I++KM+Y++SKD LRR GI ++Q
Sbjct: 60 KDCRYAIYDFEFNLGEGVR-NKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQ 118
Query: 127 ATDPTEMGFDVIMDRA 142
ATD +E+ ++ ++++
Sbjct: 119 ATDFSEVAYETVLEKV 134
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 7 MATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPD 66
M+ +G+ VADE +F ++K K +++I+F +++ + V K Y+ LP+
Sbjct: 1 MSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVV-KETSTDPSYDAFLEKLPE 59
Query: 67 DDCRYAVFDFDF-VTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEV 125
+DC YA++DF++ + + ++SKI F W+P + +R+KM+YA+SKD LRR L+G+ +V
Sbjct: 60 NDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDV 119
Query: 126 QATDPTEMGFDVIMDR 141
Q TD +E+ +D +++R
Sbjct: 120 QGTDFSEVSYDSVLER 135
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 19/152 (12%)
Query: 8 ATTGMWVADECKNSFMEMK---------WKKVHRYIVFKIDEKSKLVTVDK-----VGGA 53
+ +G+ VADE F +MK KK + ++F + K + V++ VG
Sbjct: 10 SASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 69
Query: 54 G----EGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYAT 109
G + ++ LP+ DCRYA++D F T ++ RK ++ F WAP + +++KM+YA+
Sbjct: 70 GVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYAS 128
Query: 110 SKDGLRRVLDGIHYEVQATDPTEMGFDVIMDR 141
SKD +++ GI +E QA P ++ I ++
Sbjct: 129 SKDAIKKKFQGIKHECQANGPEDLNRACIAEK 160
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 7 MATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPD 66
MA +G+ VADEC + +++ KK I+ +D+KS + V +G G ++ ++
Sbjct: 9 MAMSGVSVADECVTALNDLRHKKSRYVIMHIVDQKS--IAVKTIGERGANFDQFIEAIDK 66
Query: 67 DDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQ 126
+ YA FDF++ T D R K+ I+W P + R KMLY++S+D L + G +Q
Sbjct: 67 NVPCYAAFDFEYTTNDGPR-DKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQ 124
Query: 127 ATDPTEMGFDVIMDRAK 143
A D + + F+ I + K
Sbjct: 125 ANDASGLDFEEISRKVK 141
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 19/137 (13%)
Query: 10 TGMWVADECKNSFMEMKW---------KKVHRYIVFKIDEKSKLVTVDK-----VGGAGE 55
+G+ V+D F +MK KK + ++F + E K + +++ VG G+
Sbjct: 3 SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62
Query: 56 GYEDLAAS----LPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSK 111
+D A+ LPD DCRYA++D + T ++ +K + FI WAP ++ +++KM+YA+SK
Sbjct: 63 TVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSK 121
Query: 112 DGLRRVLDGIHYEVQAT 128
D +++ L GI +E+QA
Sbjct: 122 DAIKKKLTGIKHELQAN 138
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 9 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVD------KVGGAGEGYEDLAA 62
+G+ V+DEC F +K K +++YI++KI+ K+V VD ++ +
Sbjct: 7 VSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIV-VDVLEHDMELTSLDNIIMRIKN 65
Query: 63 SLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 122
+L + +CRY + D T + + +I+FI W+P S+ + KMLYA SK+ L R ++GI
Sbjct: 66 NLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIF 125
Query: 123 YEVQAT 128
++ T
Sbjct: 126 KSLEIT 131
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 9 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD 68
+GM V + C F E+K +K ++IVFKI+ +V D G A E +LP +D
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKGNADE----FRGALPAND 78
Query: 69 CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQAT 128
CR+ V+D +KI F+ W P + ++ +M YA+SKD L + LDG A
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG--ATAVAL 127
Query: 129 DPTEMG 134
+ EMG
Sbjct: 128 EAHEMG 133
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 24/151 (15%)
Query: 10 TGMWVADECKNSFMEMK---------WKKVHRYIVFKIDEKSKLVTVDK-----VGGAGE 55
+G+ V DE F +MK KK + ++F + + K + V++ VG G+
Sbjct: 3 SGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGD 62
Query: 56 GYED----LAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSK 111
ED LP +DCRYA++D + T ++ +K + FI WAP ++ +++KM+YA+SK
Sbjct: 63 TVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSK 121
Query: 112 DGLRRVLDGIHYEVQATDPTEMGFDVIMDRA 142
D +++ GI +E Q G D I DR+
Sbjct: 122 DAIKKKFTGIKHEWQVN-----GLDDIKDRS 147
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 7 MATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPD 66
MA +G+ + + + + +++ KK RY++ I K + V +VG Y DL
Sbjct: 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFST 59
Query: 67 DDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQ 126
+ Y FDF++ ++ K+ I W P +R R KM+Y+ S+D L V +G + +Q
Sbjct: 60 EKPCYVAFDFEYNDA-GSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQ 117
Query: 127 ATDPTEMGFD 136
A D E G D
Sbjct: 118 AND--ESGLD 125
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 10 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD- 68
+G+ V D C F MK +K +I+F I + +++ K GA +L S+ ++
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVI-QNCEIIIHSK--GASTTLTELVQSIDKNNE 61
Query: 69 --CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 122
C Y VFD SKI F +A +S R +M YA+SK + + ++G++
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 108
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 10 TGMWVADECKNSFMEMKWKKV-HRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD 68
+G+ V D C F MK +K +I+F I +++ K GA +L S+ ++
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIHSK--GASTTLTELVQSIDKNN 62
Query: 69 ---CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 122
C Y VFD SKI F +A +S R +M YA+SK + + ++G++
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 110
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 10 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYED-----LAASL 64
TG+ +++ K F + K Y + KI +++ + V + +E + L
Sbjct: 5 TGIQASEDVKEIFARARNGK---YRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 65 PDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 122
D Y +F D N + + FIAW+P S +R KMLYA ++ L++ G H
Sbjct: 62 EDKQPCYVLFRLD---SQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH 116
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 14 VADECKNSFMEMKWKKV--HRYIVFKIDEKSKLVTV-DKVGGAGEGYEDLAASLPDDDCR 70
V E K + + +++K + I+ K+D+ ++V + D++ E+L LP+ R
Sbjct: 16 VDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISP--EELKLELPERQPR 73
Query: 71 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 129
+ V+ + +V D + FI +P + +M+YA SK+ L + + +E++ TD
Sbjct: 74 FVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 34 IVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIA 93
I+ K+D+ ++V +++ E+L LP+ R+ V+ + +V D + FI
Sbjct: 28 IIMKVDKDRQMVVLEE-EFQNISPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIF 86
Query: 94 WAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 129
+P + +M+YA SK+ L + + +E++ TD
Sbjct: 87 SSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 14 VADECKNSFMEMKWKKV--HRYIVFKIDEKSKLVTV-DKVGGAGEGYEDLAASLPDDDCR 70
V E K + + +++K + I+ K+D+ ++V + D++ E+L LP+ R
Sbjct: 22 VDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISP--EELKLELPERQPR 79
Query: 71 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 129
+ V+ + +V D + FI +P + +M+YA SK+ L + + +E++ TD
Sbjct: 80 FVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 9 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKL-VTVDKVGGAGEGYEDLAASLPDD 67
+ G+ +E K F + + V V DE+ L + + VG + Y+ A LP
Sbjct: 1 SMGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYD--RAVLPLL 58
Query: 68 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 122
D + + + N + + F+AW+P S +R KMLYA ++ +++ G H
Sbjct: 59 DAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGH 113
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 11 GMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCR 70
M + E + + ++K K V+ YI K+D + + T++ V L + +P D R
Sbjct: 1 SMPLQPEAQRALQQLKQKMVN-YIQMKLDLERE--TIELVHTEPTDVAQLPSRVPRDAAR 57
Query: 71 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGI 121
Y F + + +S +F + I+ +MLY++ K R+LD +
Sbjct: 58 YHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKS---RLLDSV 105
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 23 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 82
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 32 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 89
Query: 83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 119
+ +S +F + IR +MLY++ K L +++
Sbjct: 90 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 126
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 23 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 82
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 16 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 73
Query: 83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 119
+ +S +F + IR +MLY++ K L +++
Sbjct: 74 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 110
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 23 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 82
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 37 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 94
Query: 83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 119
+ +S +F + IR +MLY++ K L +++
Sbjct: 95 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 131
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 28 KKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPD 66
+KVH+Y+ F ++ ++L D + E Y +LPD
Sbjct: 259 RKVHQYLTFSVNTPAQLALADMLRAEPEHY----LALPD 293
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 16 DECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFD 75
D K F + K Y+V +++K + V EGYE + +L D Y FD
Sbjct: 284 DATKKHFDQQKELYGDNYLVNLVNQKGHELPVK------EGYESVVHALNDPKIHYVYFD 337
Query: 76 FDFVTVDNCRK 86
F CRK
Sbjct: 338 FH----HECRK 344
>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
Length = 369
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 57 YEDLAASLPDDDCRYAVFDFD------FVTVDNCRKSKIFFIAWAPTASRIRAKMLYATS 110
Y D AASLP+DD Y + F VTVD+ ++ + AS + A Y
Sbjct: 158 YFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---ASPVVA--FYVWQ 212
Query: 111 KDGLRRVL 118
++GLR+V+
Sbjct: 213 REGLRKVM 220
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 427 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 459
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 427 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 459
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 426 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 458
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 427 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 459
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 428 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 460
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 428 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 460
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 RIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDV 137
RI KML RRVLDG+H E+Q +GF +
Sbjct: 428 RIHKKMLKPAFIFDGRRVLDGLHNELQT-----IGFQI 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,239,909
Number of Sequences: 62578
Number of extensions: 158774
Number of successful extensions: 623
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 33
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)