Query 032333
Match_columns 143
No_of_seqs 118 out of 1037
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 6.4E-49 1.4E-53 279.0 16.2 141 3-143 1-141 (141)
2 cd00013 ADF Actin depolymerisa 100.0 2.6E-40 5.6E-45 231.8 15.3 132 10-142 1-132 (132)
3 KOG1735 Actin depolymerizing f 100.0 1.5E-40 3.2E-45 233.6 11.9 135 8-142 1-140 (146)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 5.7E-39 1.2E-43 223.8 14.4 127 16-143 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 1.4E-37 3.1E-42 217.1 14.9 127 16-143 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 1E-35 2.2E-40 206.1 7.9 114 8-133 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 8.7E-26 1.9E-30 153.6 12.3 130 12-143 8-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 4.5E-26 9.7E-31 175.7 9.2 127 7-142 2-135 (342)
9 KOG1747 Protein tyrosine kinas 99.9 2.2E-23 4.7E-28 160.9 11.5 131 10-143 173-311 (342)
10 KOG3655 Drebrins and related a 99.8 7.4E-19 1.6E-23 142.6 11.9 128 11-143 6-134 (484)
11 KOG2130 Phosphatidylserine-spe 45.6 15 0.00032 29.9 1.8 37 10-47 192-228 (407)
12 KOG0444 Cytoskeletal regulator 37.6 68 0.0015 29.1 4.7 51 67-120 526-576 (1255)
13 PF11663 Toxin_YhaV: Toxin wit 37.3 48 0.001 23.5 3.2 26 70-102 80-106 (140)
14 cd01271 Fe65_C Fe65 C-terminal 28.6 2.1E+02 0.0044 19.9 7.7 32 86-117 92-123 (124)
15 PF08880 QLQ: QLQ; InterPro: 28.3 17 0.00038 19.7 -0.2 21 3-23 16-36 (37)
16 PRK04968 SecY interacting prot 27.0 1.2E+02 0.0026 22.5 3.9 32 35-66 141-177 (181)
17 PF14307 Glyco_tran_WbsX: Glyc 26.8 1.7E+02 0.0036 23.5 5.2 70 43-123 123-194 (345)
18 PF12663 DUF3788: Protein of u 26.0 86 0.0019 21.8 3.0 29 13-41 91-119 (133)
19 COG0081 RplA Ribosomal protein 24.4 2E+02 0.0043 22.2 4.8 40 7-52 137-178 (228)
20 PF14157 YmzC: YmzC-like prote 24.1 1.1E+02 0.0023 18.7 2.7 17 35-51 43-59 (63)
21 PF13645 YkuD_2: L,D-transpept 24.1 1.1E+02 0.0025 22.4 3.4 32 64-103 44-75 (176)
22 PRK11470 hypothetical protein; 23.9 3E+02 0.0064 20.7 5.7 45 30-77 36-82 (200)
23 COG4075 Uncharacterized conser 23.6 1.4E+02 0.003 20.0 3.3 31 11-41 71-103 (110)
24 PF02680 DUF211: Uncharacteriz 23.5 1.3E+02 0.0027 20.0 3.2 51 17-68 21-71 (95)
25 PF03400 DDE_Tnp_IS1: IS1 tran 22.9 1.8E+02 0.0039 20.2 4.1 43 29-71 18-61 (131)
26 PF03306 AAL_decarboxy: Alpha- 22.6 3.2E+02 0.007 20.7 5.7 71 16-98 90-160 (220)
27 cd06535 CIDE_N_CAD CIDE_N doma 22.6 1.1E+02 0.0023 19.5 2.6 36 36-74 34-69 (77)
28 KOG2313 Stress-induced protein 22.5 1.1E+02 0.0023 20.4 2.7 33 98-132 66-99 (100)
29 PF07348 Syd: Syd protein (SUK 21.7 1E+02 0.0022 22.7 2.7 31 35-65 140-175 (176)
30 PF11341 DUF3143: Protein of u 21.4 1E+02 0.0023 18.8 2.3 30 89-118 30-60 (63)
31 COG1888 Uncharacterized protei 21.3 2.6E+02 0.0055 18.5 4.5 52 17-69 23-74 (97)
32 COG4081 Uncharacterized protei 21.1 1.8E+02 0.0038 20.6 3.7 24 88-111 4-27 (148)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=6.4e-49 Score=279.05 Aligned_cols=141 Identities=91% Similarity=1.450 Sum_probs=133.8
Q ss_pred ccccccccCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecC
Q 032333 3 MAFKMATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 82 (143)
Q Consensus 3 ~~~~m~~sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~ 82 (143)
|+|.|++|||+++++|.++|++||.++.+|||+|+|+.++++|+|++++..+.+|+||.+.||+++|||++||+++.+++
T Consensus 1 ~~~~m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~ 80 (141)
T PLN03216 1 MAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVD 80 (141)
T ss_pred CcceecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCC
Confidence 67889999999999999999999988778999999999888999998765567899999999999999999999999999
Q ss_pred CceeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032333 83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 83 ~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
|+.++||+||+|||++|++|+||+|||+|++|++.|+|++.+|||+|.+||+++.+.++|+
T Consensus 81 g~~~~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 81 NCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred CCcccCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=2.6e-40 Score=231.81 Aligned_cols=132 Identities=46% Similarity=0.891 Sum_probs=124.1
Q ss_pred cCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceeeeE
Q 032333 10 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKI 89 (143)
Q Consensus 10 sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~k~ 89 (143)
||++++++|.++|++++.+++++|++|+|+.++++|+++++++.+.++++|.+.||+++|||++||+++.+. |+.++|+
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 799999999999999998867999999999988899999988744589999999999999999999998765 7899999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032333 90 FFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRA 142 (143)
Q Consensus 90 vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~ 142 (143)
+||+|||++|++|+||+|||++.+|++.++|+++.+++++.+||+++.|.+||
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999886
No 3
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=1.5e-40 Score=233.58 Aligned_cols=135 Identities=53% Similarity=0.973 Sum_probs=128.0
Q ss_pred cccCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCC---CCCceEEEEeeeeeecC--
Q 032333 8 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLP---DDDCRYAVFDFDFVTVD-- 82 (143)
Q Consensus 8 ~~sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~---~~~pry~~y~~~~~~~~-- 82 (143)
++||+.++|+|+..|++|+.++.+|+++|+|+.++.+|++++.|+++.+|++|...|| .++|||++||++|.+..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 4799999999999999999988899999999998889999998988999999999999 99999999999998844
Q ss_pred CceeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032333 83 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRA 142 (143)
Q Consensus 83 ~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~ 142 (143)
++.++|++||.|||++||+|.||+|||++++|++.|.|+++++||||++|++++.|+++|
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl 140 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKL 140 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHh
Confidence 348899999999999999999999999999999999999999999999999999999987
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=5.7e-39 Score=223.75 Aligned_cols=127 Identities=42% Similarity=0.842 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceeeeEEEEEEc
Q 032333 16 DECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWA 95 (143)
Q Consensus 16 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~ 95 (143)
|||.++|++++.+++++|++|+|++++++|+|+++|+...+++||.+.||+++|||++||+.++++ |+.++|++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 689999999999977999999999998899999988556799999999999999999999999876 7899999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032333 96 PTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 96 P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
|++||+|+||+|||++.+|++.|++++.+++++|++||+++.|.+||+
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999985
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=1.4e-37 Score=217.12 Aligned_cols=127 Identities=42% Similarity=0.845 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceeeeEEEEEEc
Q 032333 16 DECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWA 95 (143)
Q Consensus 16 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~ 95 (143)
++|.++|++|+.+++.+|++|+|+.++++|+|+++|..+.+|+||.+.||+++|||++||++++++ ++++++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999998877999999999988899999887656789999999999999999999998765 5688999999999
Q ss_pred CCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032333 96 PTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 96 P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
|++|++|.||+|||++.+|++.|+|++..|++++.+||+++.|.++++
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999974
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=1e-35 Score=206.10 Aligned_cols=114 Identities=30% Similarity=0.567 Sum_probs=100.6
Q ss_pred cccCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCC---ceEEEEeeeeeecCCc
Q 032333 8 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD---CRYAVFDFDFVTVDNC 84 (143)
Q Consensus 8 ~~sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~---pry~~y~~~~~~~~~~ 84 (143)
++|||+++++|.++|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|.+.||+++ |||++|+++
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 479999999999999999998779999999975 5899998887 468999999999988 999999874
Q ss_pred eeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeE-EEEeCCCCCC
Q 032333 85 RKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHY-EVQATDPTEM 133 (143)
Q Consensus 85 ~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~-~i~~~d~~dl 133 (143)
++++||+|||++|++|.||+|||||.+|++.|.|+++ ..++++.+|+
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 4799999999999999999999999999999998753 4566666655
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.94 E-value=8.7e-26 Score=153.55 Aligned_cols=130 Identities=19% Similarity=0.373 Sum_probs=118.7
Q ss_pred ceeCHHHHHHHHHhhcc-C--ceeEEEEEEeCCCcEEEEee-cCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceee
Q 032333 12 MWVADECKNSFMEMKWK-K--VHRYIVFKIDEKSKLVTVDK-VGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKS 87 (143)
Q Consensus 12 i~is~e~~~a~~~lk~~-~--~~~~ii~~i~~~~~~i~l~~-~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~ 87 (143)
.+|+++..+.+++++-+ + ...++|++|+.+...|+++. ..+ ..+.+|+.+.||+..|||++|.|+++++||+..+
T Consensus 8 ~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld-~is~eEladeLpe~~PRFvl~sYpt~t~DGr~st 86 (143)
T KOG1736|consen 8 CKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELD-EISPEELADELPERQPRFVLYSYPTTTDDGRVST 86 (143)
T ss_pred EEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhc-cCChHHHHhhccccCCcEEEEECcccccCCcccc
Confidence 57899999999999875 2 57889999999988999984 343 5788899999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032333 88 KIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 88 k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
+++||||.|.+|+.-++|+||++|.-+.+.. ++++.+++++-+|++.+++.++|.
T Consensus 87 PL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 87 PLCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred cEEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 9999999999999999999999999999887 678999999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.93 E-value=4.5e-26 Score=175.74 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=108.4
Q ss_pred ccccCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCC----CCChHHHhhcC-CCCCceEEEEeeeeeec
Q 032333 7 MATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGA----GEGYEDLAASL-PDDDCRYAVFDFDFVTV 81 (143)
Q Consensus 7 m~~sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~----~~~~~e~~~~l-~~~~pry~~y~~~~~~~ 81 (143)
.+|+||..++++.+.|++-++++ .|.+...|+++ ++.+..+... ..+|+.++..| .+.+|||++||.+.
T Consensus 2 S~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~nE--ql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds--- 75 (342)
T KOG1747|consen 2 SHQTGIRATEALKKFLNEAKNGK-LRLIKIVIENE--QLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS--- 75 (342)
T ss_pred CcccccchHHHHHHHHHhcccCc-eEEEEEEEecc--cccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC---
Confidence 36899999999999999999997 99998888875 7877665544 34567766654 57899999999973
Q ss_pred CCceeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCC--eeEEEEeCCCCCCCHHHHHhhh
Q 032333 82 DNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDG--IHYEVQATDPTEMGFDVIMDRA 142 (143)
Q Consensus 82 ~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g--i~~~i~~~d~~dl~~~~i~~k~ 142 (143)
+..+|+||.|+||+||||+||||||||++|++++++ +..+.++++++||+...+.+.+
T Consensus 76 ---~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 76 ---KNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ---CCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 344899999999999999999999999999999987 6789999999999999887654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.90 E-value=2.2e-23 Score=160.92 Aligned_cols=131 Identities=21% Similarity=0.396 Sum_probs=114.9
Q ss_pred cCce--eCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceee
Q 032333 10 TGMW--VADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKS 87 (143)
Q Consensus 10 sGi~--is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~ 87 (143)
+|+. ++++..+|+++|+.++ ++||+|.||..++.|.|..+.+ ..+.+|+...+|.+.|||.+|.|.+++. |....
T Consensus 173 ~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~e-GD~~e 249 (342)
T KOG1747|consen 173 QGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTHE-GDPLE 249 (342)
T ss_pred cceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEecccccC-CCCce
Confidence 5655 7999999999999987 9999999998888999987765 4679999999999999999999998764 55567
Q ss_pred eEEEEEEcCC-CCCcchhhhhhhhHHHHHHhcC---C--eeEEEEeCCCCCCCHHHHHhhhC
Q 032333 88 KIFFIAWAPT-ASRIRAKMLYATSKDGLRRVLD---G--IHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 88 k~vfI~w~P~-~a~vk~KMlyassk~~l~~~l~---g--i~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
.++|||.||. +|+||+||+|||+|..|...+. | |.++|++.|.+||+++.+.+.++
T Consensus 250 s~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 250 SIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred eEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 8999999999 9999999999999988866654 3 67899999999999998887654
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.80 E-value=7.4e-19 Score=142.61 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=114.0
Q ss_pred CceeCHHHHHHHHHhhccC-ceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceeeeE
Q 032333 11 GMWVADECKNSFMEMKWKK-VHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKI 89 (143)
Q Consensus 11 Gi~is~e~~~a~~~lk~~~-~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~k~ 89 (143)
+-.=..+++++|+++..+. .+.|+||+++++.+.+.+..++. .++++|++.+....-.|+++++. +.++.++||
T Consensus 6 ~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~--~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~Kf 80 (484)
T KOG3655|consen 6 TTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGE--GGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKF 80 (484)
T ss_pred ccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeecccc--ccHHHHhhhcccCceeEEEEEec---CcccCCcce
Confidence 3334578999999998864 79999999999866666655554 68999999999999999999986 667889999
Q ss_pred EEEEEcCCCCCcchhhhhhhhHHHHHHhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032333 90 FFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDRAK 143 (143)
Q Consensus 90 vfI~w~P~~a~vk~KMlyassk~~l~~~l~gi~~~i~~~d~~dl~~~~i~~k~~ 143 (143)
|||.||++++++-+|-.+|++++.+++.|.|+|++|+|++.+||+.+.|.++|+
T Consensus 81 vLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 81 VLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred EEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874
No 11
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=45.64 E-value=15 Score=29.86 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=29.5
Q ss_pred cCceeCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEE
Q 032333 10 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTV 47 (143)
Q Consensus 10 sGi~is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l 47 (143)
+||.|++....|+|.|-.|+ .||++|--..-.+-|.+
T Consensus 192 tsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 192 TSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred ceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 45779999999999999997 89999986654444544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=37.55 E-value=68 Score=29.10 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCceEEEEeeeeeecCCceeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCC
Q 032333 67 DDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDG 120 (143)
Q Consensus 67 ~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g 120 (143)
+.-||++..-.+ .+.| .-.|-..||+++.|..-.+|--|-+...|++.|+.
T Consensus 526 eaDcYiVLKT~~-ddsG--~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA 576 (1255)
T KOG0444|consen 526 EADCYIVLKTTR-DDSG--QLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGA 576 (1255)
T ss_pred cccEEEEEEeec-cccc--ccceeEEEEecccccccchhhhHHHhhhhhhhhCc
Confidence 345899988653 2223 34677889999999999999988889999988864
No 13
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.30 E-value=48 Score=23.51 Aligned_cols=26 Identities=38% Similarity=0.795 Sum_probs=19.7
Q ss_pred eE-EEEeeeeeecCCceeeeEEEEEEcCCCCCcc
Q 032333 70 RY-AVFDFDFVTVDNCRKSKIFFIAWAPTASRIR 102 (143)
Q Consensus 70 ry-~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk 102 (143)
|| .+|||+ ..+|+|++.|+-|....|
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR 106 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLR 106 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchh
Confidence 77 667775 245999999999877655
No 14
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.56 E-value=2.1e+02 Score=19.92 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=24.9
Q ss_pred eeeEEEEEEcCCCCCcchhhhhhhhHHHHHHh
Q 032333 86 KSKIFFIAWAPTASRIRAKMLYATSKDGLRRV 117 (143)
Q Consensus 86 ~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~ 117 (143)
..=..+++||+.+|..-.+.+=+++..--++.
T Consensus 92 ~~f~ChVF~ce~~A~~ls~av~aAc~lrYQkc 123 (124)
T cd01271 92 QRFECHVFWCEPNAGNVSKAVEAACKLRYQKC 123 (124)
T ss_pred CcEEEEEEEecCChHHHHHHHHHHHHHHHhhc
Confidence 44588999999999988888888777655443
No 15
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.33 E-value=17 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.2
Q ss_pred ccccccccCceeCHHHHHHHH
Q 032333 3 MAFKMATTGMWVADECKNSFM 23 (143)
Q Consensus 3 ~~~~m~~sGi~is~e~~~a~~ 23 (143)
+++++.+.|.+|.+++..++.
T Consensus 16 ~ayK~l~~~~pVP~~l~~~I~ 36 (37)
T PF08880_consen 16 LAYKYLARNQPVPPQLQQAIQ 36 (37)
T ss_pred HHHHHHHcCCCCCHHHHHhhh
Confidence 578888889999999887754
No 16
>PRK04968 SecY interacting protein Syd; Provisional
Probab=27.01 E-value=1.2e+02 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.0
Q ss_pred EEEEeCCCcEEEEeecCCC-----CCChHHHhhcCCC
Q 032333 35 VFKIDEKSKLVTVDKVGGA-----GEGYEDLAASLPD 66 (143)
Q Consensus 35 i~~i~~~~~~i~l~~~~~~-----~~~~~e~~~~l~~ 66 (143)
+..+++.+.+|.++.-|.. ..++.+|++.|.+
T Consensus 141 ~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 141 VISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 4555666667777766653 3678899988865
No 17
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=26.83 E-value=1.7e+02 Score=23.55 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred cEEEEeecCCCCCChHHHhhcCCC--CCceEEEEeeeeeecCCceeeeEEEEEEcCCCCCcchhhhhhhhHHHHHHhcCC
Q 032333 43 KLVTVDKVGGAGEGYEDLAASLPD--DDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDG 120 (143)
Q Consensus 43 ~~i~l~~~~~~~~~~~e~~~~l~~--~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g 120 (143)
..+.+++.-...+++.++...|.+ .+|||+ +++ .|-||+-|-|...+--.+|+-.=-..+.+.-++|
T Consensus 123 ~~~l~~q~y~~~~d~~~~~~~l~~~F~D~rYi--kVd---------GKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~g 191 (345)
T PF14307_consen 123 NEILIEQKYSGEDDWKEHFRYLLPYFKDPRYI--KVD---------GKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPG 191 (345)
T ss_pred ccccccccCCchhHHHHHHHHHHHHhCCCCce--eEC---------CEEEEEEECcccccCHHHHHHHHHHHHHHcCCCc
Confidence 455555554334567777766654 679994 433 2677888889777555444433333334444556
Q ss_pred eeE
Q 032333 121 IHY 123 (143)
Q Consensus 121 i~~ 123 (143)
+..
T Consensus 192 iyi 194 (345)
T PF14307_consen 192 IYI 194 (345)
T ss_pred eEE
Confidence 554
No 18
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=25.97 E-value=86 Score=21.76 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=24.5
Q ss_pred eeCHHHHHHHHHhhccCceeEEEEEEeCC
Q 032333 13 WVADECKNSFMEMKWKKVHRYIVFKIDEK 41 (143)
Q Consensus 13 ~is~e~~~a~~~lk~~~~~~~ii~~i~~~ 41 (143)
.+++.+++.|++-+...+-+|+.|.+.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 57899999999988876789999998764
No 19
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=24.37 E-value=2e+02 Score=22.18 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=27.5
Q ss_pred ccccCce--eCHHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCC
Q 032333 7 MATTGMW--VADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGG 52 (143)
Q Consensus 7 m~~sGi~--is~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~ 52 (143)
.+.+-.. +++++..+++++|.++ +-|+.++. .++...-|.
T Consensus 137 lMP~Pk~gTvt~Dv~~av~~~K~g~----v~~R~dk~--g~ih~~iGk 178 (228)
T COG0081 137 LMPNPKTGTVTDDVAKAVEELKKGT----VEFRADKA--GVIHVPIGK 178 (228)
T ss_pred CCCCCCCCCCCcCHHHHHHHHhcCc----EEEEECCC--ceEEEEecC
Confidence 4455556 8999999999999986 56676664 344444444
No 20
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=24.14 E-value=1.1e+02 Score=18.72 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=13.9
Q ss_pred EEEEeCCCcEEEEeecC
Q 032333 35 VFKIDEKSKLVTVDKVG 51 (143)
Q Consensus 35 i~~i~~~~~~i~l~~~~ 51 (143)
||+++.+.++|.|.++.
T Consensus 43 Ifkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 43 IFKYDEDTNEITLKKEF 59 (63)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCCeEEEEEee
Confidence 78999988899887653
No 21
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=24.08 E-value=1.1e+02 Score=22.44 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCCCceEEEEeeeeeecCCceeeeEEEEEEcCCCCCcch
Q 032333 64 LPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRA 103 (143)
Q Consensus 64 l~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 103 (143)
+|..++|+.|+|+. ..++++=+||-.+..--.
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~gsg~ 75 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRGSGN 75 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccCCCC
Confidence 47778999999996 347888889988765543
No 22
>PRK11470 hypothetical protein; Provisional
Probab=23.91 E-value=3e+02 Score=20.68 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred ceeEEEEEEeCCCcEEEEeecCCC--CCChHHHhhcCCCCCceEEEEeee
Q 032333 30 VHRYIVFKIDEKSKLVTVDKVGGA--GEGYEDLAASLPDDDCRYAVFDFD 77 (143)
Q Consensus 30 ~~~~ii~~i~~~~~~i~l~~~~~~--~~~~~e~~~~l~~~~pry~~y~~~ 77 (143)
+|-.||+..+++ +-++++...+. ...+++|++. ....+|+++|+.
T Consensus 36 sHvGII~~~~~~-~~~VlEA~~~~vr~TpLs~fi~r--~~~g~i~v~Rl~ 82 (200)
T PRK11470 36 NHVGIIIGHNGE-DFLVAESRVPLSTVTTLSRFIKR--SANQRYAIKRLD 82 (200)
T ss_pred ceEEEEEEEcCC-ceEEEEecCCceEEeEHHHHHhc--CcCceEEEEEec
Confidence 578888888764 57778876542 3568888886 447899999995
No 23
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=23.59 E-value=1.4e+02 Score=20.03 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=16.7
Q ss_pred CceeCHHHHHHHHHhhccC--ceeEEEEEEeCC
Q 032333 11 GMWVADECKNSFMEMKWKK--VHRYIVFKIDEK 41 (143)
Q Consensus 11 Gi~is~e~~~a~~~lk~~~--~~~~ii~~i~~~ 41 (143)
|.-+++|+.+.++++-..+ +.||-|..|+-+
T Consensus 71 ~tVV~Ee~vekie~~~~Ekla~eryTIi~ipI~ 103 (110)
T COG4075 71 GTVVKEEKVEKIEELLKEKLANERYTIIEIPIE 103 (110)
T ss_pred EEecCHHHHHHHHHHHHHHhcCCceEEEEeeee
Confidence 3445666666666553321 456666666653
No 24
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=23.49 E-value=1.3e+02 Score=19.96 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCC
Q 032333 17 ECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD 68 (143)
Q Consensus 17 e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~ 68 (143)
++..++.++.--...+-.+..++.+.+.+.+.-.|. +.+|+++.+.+..-.
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-~id~d~i~~~Ie~~G 71 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGD-DIDFDEIKEAIEELG 71 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-SE-HHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-CCCHHHHHHHHHHcC
Confidence 344444555443457888888998888888777776 578998887765433
No 25
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=22.86 E-value=1.8e+02 Score=20.20 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred CceeEEEEEEeCCCcEEEEeecCCC-CCChHHHhhcCCCCCceE
Q 032333 29 KVHRYIVFKIDEKSKLVTVDKVGGA-GEGYEDLAASLPDDDCRY 71 (143)
Q Consensus 29 ~~~~~ii~~i~~~~~~i~l~~~~~~-~~~~~e~~~~l~~~~pry 71 (143)
++.+|+.+.++.+...|+--.-|++ ..++..|.+.|++-+|.+
T Consensus 18 ~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 18 KNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred CCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 3589999999988777775445554 356788888887666554
No 26
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=22.62 E-value=3.2e+02 Score=20.73 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEEeeeeeecCCceeeeEEEEEEc
Q 032333 16 DECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWA 95 (143)
Q Consensus 16 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y~~~~~~~~~~~~~k~vfI~w~ 95 (143)
+++.+.+.++-..+ ..+..++|++.-+.|.+.........|.-|.+.+.. ++.|-+-+.+ --+.=+|+
T Consensus 90 ~~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~-Q~~f~~~ni~----------GTlVGf~s 157 (220)
T PF03306_consen 90 EELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKN-QPEFTFENIE----------GTLVGFYS 157 (220)
T ss_dssp HHHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT---EEEEEEEE----------EEEEEEEE
T ss_pred HHHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhcc-CceEEecCcE----------EEEEEEEc
Confidence 44555566654444 557778999877777665332222345555554444 6766665554 35678899
Q ss_pred CCC
Q 032333 96 PTA 98 (143)
Q Consensus 96 P~~ 98 (143)
|+-
T Consensus 158 P~~ 160 (220)
T PF03306_consen 158 PEY 160 (220)
T ss_dssp -GG
T ss_pred chh
Confidence 973
No 27
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=22.61 E-value=1.1e+02 Score=19.51 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=23.9
Q ss_pred EEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceEEEE
Q 032333 36 FKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVF 74 (143)
Q Consensus 36 ~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~pry~~y 74 (143)
|.+....-.|.+++.|. ..+ ||+...||++.. |++.
T Consensus 34 l~l~~~~~~l~L~eDGT-eVt-EeyF~tLp~nT~-lmvL 69 (77)
T cd06535 34 LQLPCAGSRLCLYEDGT-EVT-EEYFPTLPDNTE-LVLL 69 (77)
T ss_pred hCCCCCCcEEEEecCCc-Eeh-HHHHhcCCCCcE-EEEE
Confidence 34443334677888776 345 899999999766 5554
No 28
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=22.50 E-value=1.1e+02 Score=20.42 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=21.4
Q ss_pred CCCcchhhhhhhhHHHHHHhcCCee-EEEEeCCCCC
Q 032333 98 ASRIRAKMLYATSKDGLRRVLDGIH-YEVQATDPTE 132 (143)
Q Consensus 98 ~a~vk~KMlyassk~~l~~~l~gi~-~~i~~~d~~d 132 (143)
+..-|.||+|..-++.+... |+| ..|++..|++
T Consensus 66 s~v~RHRlVy~~L~eEl~~~--gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVYKALKEELAGT--GVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHHHHHHHHhhcc--ceeEEEeeccCCCC
Confidence 55679999995555444432 465 4777777765
No 29
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=21.74 E-value=1e+02 Score=22.74 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=17.6
Q ss_pred EEEEeCCCcEEEEeecCCC-----CCChHHHhhcCC
Q 032333 35 VFKIDEKSKLVTVDKVGGA-----GEGYEDLAASLP 65 (143)
Q Consensus 35 i~~i~~~~~~i~l~~~~~~-----~~~~~e~~~~l~ 65 (143)
++.+++.+.+|.++.-|.. ..++.+|++.|.
T Consensus 140 lisv~N~sGeV~LE~~G~~~~~~LA~sL~eFL~~L~ 175 (176)
T PF07348_consen 140 LISVDNESGEVILEQFGTKPREVLAPSLAEFLSQLE 175 (176)
T ss_dssp EEEEETTT--EEEEETTSS-EEEEESSHHHHHHH-E
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhhHHHHHHhcC
Confidence 4455555566677666553 357888888764
No 30
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=21.40 E-value=1e+02 Score=18.76 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=25.2
Q ss_pred EEEEEEcCCC-CCcchhhhhhhhHHHHHHhc
Q 032333 89 IFFIAWAPTA-SRIRAKMLYATSKDGLRRVL 118 (143)
Q Consensus 89 ~vfI~w~P~~-a~vk~KMlyassk~~l~~~l 118 (143)
=+.|.|.+.+ ..++...-|+=+|+.+.+.+
T Consensus 30 ~L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 30 DLVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 3578888888 88888999999999997764
No 31
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.30 E-value=2.6e+02 Score=18.47 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccCceeEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCc
Q 032333 17 ECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDC 69 (143)
Q Consensus 17 e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~l~~~~~~~~~~~e~~~~l~~~~p 69 (143)
++...+.+|..=...|-.+..++.+...+.+.-.|. +-+|+++.+.+.+-.+
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-~ldydei~~~iE~~Gg 74 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-NLDYDEIEEVIEELGG 74 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-CCCHHHHHHHHHHcCC
Confidence 445555555443458888888998877777766676 5789988887755444
No 32
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.09 E-value=1.8e+02 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCCcchhhhhhhhH
Q 032333 88 KIFFIAWAPTASRIRAKMLYATSK 111 (143)
Q Consensus 88 k~vfI~w~P~~a~vk~KMlyassk 111 (143)
|.+.+.=||+.-+--.-.+|.|+|
T Consensus 4 kvlv~lGCPeiP~qissaiYls~k 27 (148)
T COG4081 4 KVLVSLGCPEIPPQISSAIYLSHK 27 (148)
T ss_pred eEEEEecCCCCCccchHHHHHHHH
Confidence 788999999999988999999998
Done!