BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032335
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYAD
GGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYR
KSIVTRENNKASNREREKSTEVS

High Scoring Gene Products

Symbol, full name Information P value
CLC2
clathrin light chain 2
protein from Arabidopsis thaliana 2.2e-25
CLC3
clathrin light chain 3
protein from Arabidopsis thaliana 5.8e-18
AT2G20760 protein from Arabidopsis thaliana 1.6e-15

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032335
        (143 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2061196 - symbol:CLC2 "clathrin light chain 2"...   288  2.2e-25   1
TAIR|locus:2074378 - symbol:CLC3 "clathrin light chain 3"...   218  5.8e-18   1
TAIR|locus:2051472 - symbol:AT2G20760 species:3702 "Arabi...   198  1.6e-15   1


>TAIR|locus:2061196 [details] [associations]
            symbol:CLC2 "clathrin light chain 2" species:3702
            "Arabidopsis thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0016192
            "vesicle-mediated transport" evidence=IEA] [GO:0030130 "clathrin
            coat of trans-Golgi network vesicle" evidence=IEA] [GO:0030132
            "clathrin coat of coated pit" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009504 "cell plate" evidence=IDA]
            InterPro:IPR000996 Pfam:PF01086 GO:GO:0005886 GO:GO:0006886
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016192 GO:GO:0005856
            GO:GO:0005198 GO:GO:0009941 GO:GO:0030130 GO:GO:0030132
            GO:GO:0009524 GO:GO:0009504 eggNOG:NOG255768 HOGENOM:HOG000241126
            PANTHER:PTHR10639 EMBL:AF002109 EMBL:AY092995 EMBL:AY114610
            EMBL:AK226476 EMBL:AY088269 IPI:IPI00537302 PIR:G84824
            RefSeq:NP_565921.1 UniGene:At.22455 UniGene:At.67955 DIP:DIP-59589N
            IntAct:O04209 PaxDb:O04209 PRIDE:O04209 EnsemblPlants:AT2G40060.1
            GeneID:818594 KEGG:ath:AT2G40060 TAIR:At2g40060 InParanoid:O04209
            OMA:PASPDAY PhylomeDB:O04209 ProtClustDB:CLSN2917287
            Genevestigator:O04209 Uniprot:O04209
        Length = 258

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 73/142 (51%), Positives = 92/142 (64%)

Query:     5 DSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG--- 61
             D+ +SVPV+    SFD T     SA D S    +S     DD FA+ +S YG Y++G   
Sbjct:    15 DASESVPVSG---SFDATDSF--SAFDGSLQVEDSV----DDVFAAPSSDYGAYSNGDGI 65

Query:    62 -GS----DGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKL 116
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+L         +L QIIEEA++YK 
Sbjct:    66 FGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKE 125

Query:   117 EFYRKSIVTRENNKASNREREK 138
             EF++K  VT ENNKA+NRE+EK
Sbjct:   126 EFHKKIEVTCENNKAANREKEK 147


>TAIR|locus:2074378 [details] [associations]
            symbol:CLC3 "clathrin light chain 3" species:3702
            "Arabidopsis thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0016192
            "vesicle-mediated transport" evidence=IEA] [GO:0030130 "clathrin
            coat of trans-Golgi network vesicle" evidence=IEA] [GO:0030132
            "clathrin coat of coated pit" evidence=IEA] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=RCA]
            InterPro:IPR000996 Pfam:PF01086 EMBL:CP002686 GO:GO:0006886
            GO:GO:0016192 GO:GO:0005198 EMBL:AF049236 GO:GO:0030130
            GO:GO:0030132 HOGENOM:HOG000241126 PANTHER:PTHR10639 EMBL:AK228229
            IPI:IPI00529954 PIR:T51160 RefSeq:NP_566956.4 UniGene:At.11927
            PRIDE:F4J5M9 EnsemblPlants:AT3G51890.1 GeneID:824352
            KEGG:ath:AT3G51890 TAIR:At3g51890 eggNOG:NOG318928
            InParanoid:O65024 OMA:SAMEKEE Uniprot:F4J5M9
        Length = 258

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query:    60 DGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFY 119
             D  +D  ILPPPS M  EEGFALREWRR NA+RL         M+ QI+E AE+YK EFY
Sbjct:    79 DDTNDS-ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFY 137

Query:   120 RKSIVTRENNKASNREREK 138
              K  VT ENNK  NRE+EK
Sbjct:   138 SKRNVTIENNKKLNREKEK 156


>TAIR|locus:2051472 [details] [associations]
            symbol:AT2G20760 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006886 "intracellular protein transport"
            evidence=IEA] [GO:0016192 "vesicle-mediated transport"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006499 "N-terminal protein
            myristoylation" evidence=RCA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=RCA] [GO:0007030 "Golgi
            organization" evidence=RCA] [GO:0007033 "vacuole organization"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            InterPro:IPR000996 Pfam:PF01086 GO:GO:0005829 GO:GO:0005886
            GO:GO:0006886 EMBL:CP002685 GO:GO:0016192 GO:GO:0005198
            GO:GO:0030130 GO:GO:0030132 EMBL:AC006234 EMBL:AY057515
            EMBL:AY057654 EMBL:BT025885 EMBL:AY084472 IPI:IPI00532112
            PIR:A84593 RefSeq:NP_565484.1 UniGene:At.23177 PRIDE:Q9SKU1
            EnsemblPlants:AT2G20760.1 GeneID:816605 KEGG:ath:AT2G20760
            TAIR:At2g20760 eggNOG:NOG255768 HOGENOM:HOG000241126
            InParanoid:Q9SKU1 OMA:NEMREEG PhylomeDB:Q9SKU1
            ProtClustDB:CLSN2914962 Genevestigator:Q9SKU1 PANTHER:PTHR10639
            Uniprot:Q9SKU1
        Length = 338

 Score = 198 (74.8 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 55/125 (44%), Positives = 67/125 (53%)

Query:    18 SFD-DTAEQLNSAVDLSDDNNN--SSFQSG-DDAFASQTSVYGEYADGGSDGPILPPPSD 73
             SF+ D A         S  N++  S F+S  +DA  +     G+ A   SDGPILP P++
Sbjct:    45 SFNGDPASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGD-AIFASDGPILPDPNE 103

Query:    74 MVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133
             M  EEGF  REWRR N I L         M NQII EAE++K  FY K   T E NK  N
Sbjct:   104 M-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDN 162

Query:   134 REREK 138
             RE+EK
Sbjct:   163 REKEK 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.126   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       134   0.00091  102 3  11 23  0.38    32
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.22u 0.16s 15.38t   Elapsed:  00:00:00
  Total cpu time:  15.22u 0.16s 15.38t   Elapsed:  00:00:00
  Start:  Sat May 11 02:01:20 2013   End:  Sat May 11 02:01:20 2013

Back to top