BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032335
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LVH|D Chain D, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|E Chain E, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|F Chain F, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 205
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 59 ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEF 118
A+G +DG +D + +E ++R+WR E RL M + E+A++ E+
Sbjct: 79 ANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 138
Query: 119 YRKSIVTRENNKASNREREKS 139
++ E NK +NR +K+
Sbjct: 139 NQRQSEQVEKNKINNRIADKA 159
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 10 VPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG 61
+ VA + + DD +QL ++L N ++ G+ +F +T + DG
Sbjct: 82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDG 133
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQET-------KGPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQET-------KGPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQET-------KGPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 AEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEY 58
A QLN+ VDL D N S+Q D+ +T + +
Sbjct: 352 ASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMW 387
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 AEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEY 58
A QLN+ VDL D N S+Q D+ +T + +
Sbjct: 351 ASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMW 386
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 AEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEY 58
A QLN+ VDL D N S+Q D+ +T + +
Sbjct: 333 ASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMW 368
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 AEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEY 58
A QLN+ VDL D N S+Q D+ +T + +
Sbjct: 363 ASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMW 398
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYA 59
S+ SV Y + TAEQL+ V+ D N D +F S VYG Y+
Sbjct: 22 SISSVLTILYYGANGSTAEQLSKYVEKEADKNKD-----DISFKSMNKVYGRYS 70
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYA 59
S+ SV Y + TAEQL+ V+ D N D +F S VYG Y+
Sbjct: 22 SISSVLTILYYGANGSTAEQLSKYVEKEADKNKD-----DISFKSMNKVYGRYS 70
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 3 TFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGG 62
T+DSVD E+ + + ++L VD + NN+SS + YG Y D G
Sbjct: 338 TYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSS-----------SKPYGPY-DRG 385
Query: 63 SDGPILPPPSDMV 75
SD I SD V
Sbjct: 386 SDMKIWVNSSDGV 398
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 3 TFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGG 62
T+DSVD E+ + + ++L VD + NN+SS + YG Y D G
Sbjct: 338 TYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSS-----------SKPYGPY-DRG 385
Query: 63 SDGPILPPPSDMV 75
SD I SD V
Sbjct: 386 SDMKIWVNSSDGV 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,084,737
Number of Sequences: 62578
Number of extensions: 148427
Number of successful extensions: 327
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 23
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)