Query 032335
Match_columns 143
No_of_seqs 42 out of 44
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 20:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_J LCA, clathrin light cha 99.7 1.7E-16 5.8E-21 110.2 8.9 65 77-141 6-70 (70)
2 3lvg_D LCB, clathrin light cha 99.7 7.2E-18 2.5E-22 135.5 0.3 89 55-143 60-148 (190)
3 3lvh_D LCB, clathrin light cha 99.5 2.3E-14 7.9E-19 116.4 5.9 86 57-143 77-163 (205)
4 4a17_V RPL7, 60S ribosomal pro 67.7 24 0.00081 28.7 7.9 44 83-126 17-60 (239)
5 4gdk_C APG16-like 1, autophagy 60.6 12 0.0004 22.9 3.7 27 84-110 5-31 (36)
6 3izc_e 60S ribosomal protein R 54.9 30 0.001 28.1 6.3 40 84-123 21-60 (244)
7 3iz5_e 60S ribosomal protein L 47.4 29 0.001 28.2 5.1 38 85-122 24-61 (244)
8 4h3z_A TRNA (guanine-N(1)-)-me 40.2 52 0.0018 27.6 5.7 28 79-112 226-253 (276)
9 4efa_E V-type proton ATPase su 37.4 1.3E+02 0.0046 22.7 8.3 45 86-130 28-73 (233)
10 4aqr_D Calcium-transporting AT 34.6 1E+02 0.0034 20.5 6.2 8 80-87 4-11 (57)
11 3hpw_C Protein CCDA; alpha+bet 31.3 31 0.0011 20.7 2.2 14 82-95 5-18 (36)
12 2c5z_A SET domain protein 2; S 29.3 1.1E+02 0.0036 22.6 5.2 25 101-125 73-97 (104)
13 1pd7_B MAD1; PAH2, SIN3, eukar 25.8 71 0.0024 18.4 3.0 18 106-127 6-23 (26)
14 2rhf_A DNA helicase RECQ; HRDC 24.1 46 0.0016 21.3 2.2 14 80-93 9-22 (77)
15 2kv2_A Bloom syndrome protein; 22.8 50 0.0017 21.7 2.2 14 80-93 11-24 (85)
16 3sde_A Paraspeckle component 1 22.3 1.9E+02 0.0065 21.4 5.6 11 63-73 201-211 (261)
17 3oja_A Leucine-rich immune mol 21.4 1.9E+02 0.0065 23.6 5.9 34 95-128 445-478 (487)
18 2e1f_A Werner syndrome ATP-dep 21.3 54 0.0018 22.8 2.2 13 80-92 19-31 (103)
19 1sy9_B Cyclic-nucleotide-gated 21.0 36 0.0012 19.5 1.1 9 81-89 16-24 (26)
20 4efa_G V-type proton ATPase su 20.6 2.5E+02 0.0084 20.3 8.4 26 102-127 35-60 (119)
No 1
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=99.68 E-value=1.7e-16 Score=110.22 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=62.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 032335 77 EEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTE 141 (143)
Q Consensus 77 EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NREkEk~fL 141 (143)
+||.+||+||.+++.+|++|+..+++++..||.+|..+|+.||..|+.+++.+|++||..++.||
T Consensus 6 ~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl 70 (70)
T 1xi4_J 6 SEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY 70 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46779999999999999999999999999999999999999999999999999999999999887
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=99.66 E-value=7.2e-18 Score=135.49 Aligned_cols=89 Identities=22% Similarity=0.267 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032335 55 YGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNR 134 (143)
Q Consensus 55 ~~~~~ng~~dgpilPpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NR 134 (143)
|..++||.+||++.+++.++..+||..||+||.++..+|++|++.+++++++++++|...+++||+.|+.++|.||++||
T Consensus 60 ~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR 139 (190)
T 3lvg_D 60 XXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139 (190)
T ss_dssp CCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55788888999999888888789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccC
Q 032335 135 EREKSTEVS 143 (143)
Q Consensus 135 EkEk~fLAs 143 (143)
..|+.||++
T Consensus 140 ~aEEeFLaq 148 (190)
T 3lvg_D 140 IADKAFYQQ 148 (190)
T ss_dssp SSTTTSSHH
T ss_pred HHHHHHHhC
Confidence 999999973
No 3
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=99.49 E-value=2.3e-14 Score=116.41 Aligned_cols=86 Identities=27% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 032335 57 EYADGGSDGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRE 135 (143)
Q Consensus 57 ~~~ng~~dgpil-PpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NRE 135 (143)
-++||.+|+-.- ..+... .+||..||+||.++..+|++|+..++.++..++++|...+++||+.|+.+++.+|++||.
T Consensus 77 qesngp~d~yaai~qad~l-eeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ 155 (205)
T 3lvh_D 77 QEANGPADGYAAIAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 155 (205)
T ss_dssp --------------CCSTT-TBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCCCccchhhhcccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456665555332 223333 499999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q 032335 136 REKSTEVS 143 (143)
Q Consensus 136 kEk~fLAs 143 (143)
.|+.||++
T Consensus 156 aeeeFlaq 163 (205)
T 3lvh_D 156 ADKAFYQQ 163 (205)
T ss_dssp STTTSSHH
T ss_pred HHHHHHhC
Confidence 99999963
No 4
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=67.69 E-value=24 Score=28.68 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126 (143)
Q Consensus 83 REWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~ 126 (143)
-+|+.+.+....+..++.++.|..|...|+.|..+|.......+
T Consensus 17 ~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~i 60 (239)
T 4a17_V 17 EKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665566666788899999999999999987655544
No 5
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=60.61 E-value=12 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.583 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 84 EWRRENAIRLEEKEKKEKEMLNQIIEE 110 (143)
Q Consensus 84 EWRRqNA~~LeeKEk~EKe~r~qII~e 110 (143)
-|||-=..+|+.+++.++.....||..
T Consensus 5 ~Wrr~I~~~Lr~RdR~q~~~F~diI~~ 31 (36)
T 4gdk_C 5 RWKRHISEQLRRRDRLQRQAFEEIILQ 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 499999999999999999999999963
No 6
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=54.92 E-value=30 Score=28.11 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 84 EWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI 123 (143)
Q Consensus 84 EWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~ 123 (143)
+|+.+++....++.++.++.|..|...||.|..++.....
T Consensus 21 ~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r 60 (244)
T 3izc_e 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555566778888999999999999875443
No 7
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=47.36 E-value=29 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 85 WRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122 (143)
Q Consensus 85 WRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR 122 (143)
|+.+.+....++.++.++.|..|...||.|..++....
T Consensus 24 ~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~ 61 (244)
T 3iz5_e 24 WAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQD 61 (244)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333334444567788899999999999987543
No 8
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=40.16 E-value=52 Score=27.59 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 79 GFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112 (143)
Q Consensus 79 g~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAE 112 (143)
-..|+.||+++++. +.+.+|-+++.++.
T Consensus 226 H~~I~~WR~~qsl~------rT~~rRPDLl~~~~ 253 (276)
T 4h3z_A 226 HAEIEQWRRREALR------NTWLKRPDLIVQAR 253 (276)
T ss_dssp HHHHHHHHHHHHHH------HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHCHHHHHhhh
Confidence 45689999999874 45666667766553
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=37.40 E-value=1.3e+02 Score=22.75 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032335 86 RRENAIRLEEKEKKEK-EMLNQIIEEAEEYKLEFYRKSIVTRENNK 130 (143)
Q Consensus 86 RRqNA~~LeeKEk~EK-e~r~qII~eAEeyk~eFYeKR~~~~E~nK 130 (143)
-+..|.+|..|-++|- ..+.+++.+|..-+.+.|+|.....+..+
T Consensus 28 A~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~ 73 (233)
T 4efa_E 28 AEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQ 73 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544443333 24567888999999999998877766554
No 10
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=34.58 E-value=1e+02 Score=20.49 Aligned_cols=8 Identities=38% Similarity=1.012 Sum_probs=6.3
Q ss_pred hHHHHHHH
Q 032335 80 FALREWRR 87 (143)
Q Consensus 80 ~~LREWRR 87 (143)
..|+.||.
T Consensus 4 e~L~rWR~ 11 (57)
T 4aqr_D 4 ERLQQWRK 11 (57)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47899994
No 11
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=31.28 E-value=31 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 032335 82 LREWRRENAIRLEE 95 (143)
Q Consensus 82 LREWRRqNA~~Lee 95 (143)
-+.|+..|+.-|++
T Consensus 5 ~~~W~~EN~~ai~~ 18 (36)
T 3hpw_C 5 AERWKAENQEGMAE 18 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999988865
No 12
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=29.26 E-value=1.1e+02 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 101 KEMLNQIIEEAEEYKLEFYRKSIVT 125 (143)
Q Consensus 101 Ke~r~qII~eAEeyk~eFYeKR~~~ 125 (143)
+++|.+|.+=.-.|.+.|..|+...
T Consensus 73 ~~Kr~KIK~F~k~YMdKfl~K~~~K 97 (104)
T 2c5z_A 73 KGKRHKVKEFINSYMDKIILKKKQK 97 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999988644
No 13
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=25.77 E-value=71 Score=18.41 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032335 106 QIIEEAEEYKLEFYRKSIVTRE 127 (143)
Q Consensus 106 qII~eAEeyk~eFYeKR~~~~E 127 (143)
|++-+|.+|++ +|...||
T Consensus 6 q~LLeAAeyLE----rrEre~E 23 (26)
T 1pd7_B 6 QMLLEAADYLE----RREREAE 23 (26)
T ss_dssp HHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH----HHHHhhh
Confidence 56667776654 5555554
No 14
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=24.12 E-value=46 Score=21.28 Aligned_cols=14 Identities=50% Similarity=0.392 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIRL 93 (143)
Q Consensus 80 ~~LREWRRqNA~~L 93 (143)
..|++||.+-|.+.
T Consensus 9 ~~L~~wR~~~A~~~ 22 (77)
T 2rhf_A 9 EALRELRRELMKET 22 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 46899999887653
No 15
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=22.78 E-value=50 Score=21.71 Aligned_cols=14 Identities=14% Similarity=-0.100 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIRL 93 (143)
Q Consensus 80 ~~LREWRRqNA~~L 93 (143)
..|+.||.+-|.+.
T Consensus 11 ~~L~~wR~~~A~~~ 24 (85)
T 2kv2_A 11 GELTEVCKSLGKVF 24 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 47999999888653
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=22.30 E-value=1.9e+02 Score=21.43 Aligned_cols=11 Identities=18% Similarity=0.450 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 032335 63 SDGPILPPPSD 73 (143)
Q Consensus 63 ~dgpilPpP~e 73 (143)
+.+|..+.|..
T Consensus 201 ~~~p~~~~pgs 211 (261)
T 3sde_A 201 EQPPRFAQPGT 211 (261)
T ss_dssp TSCSEECCTTS
T ss_pred cCCCCCCCCCc
Confidence 44666666654
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.36 E-value=1.9e+02 Score=23.59 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032335 95 EKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTREN 128 (143)
Q Consensus 95 eKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~ 128 (143)
++-++++++..+.|.+.+.-+.+=+.+++-.|.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 445 TQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3444566666666666666666666666655544
No 18
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=21.26 E-value=54 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIR 92 (143)
Q Consensus 80 ~~LREWRRqNA~~ 92 (143)
..||.||++-|.+
T Consensus 19 ~~L~~wR~~~A~~ 31 (103)
T 2e1f_A 19 GKLVEARQKHANK 31 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5799999998865
No 19
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=21.02 E-value=36 Score=19.54 Aligned_cols=9 Identities=56% Similarity=1.051 Sum_probs=7.4
Q ss_pred HHHHHHHHH
Q 032335 81 ALREWRREN 89 (143)
Q Consensus 81 ~LREWRRqN 89 (143)
+||+|.-+|
T Consensus 16 v~r~wa~~n 24 (26)
T 1sy9_B 16 VLREWAYRN 24 (26)
T ss_pred HHHHHHHhc
Confidence 689998776
No 20
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=20.64 E-value=2.5e+02 Score=20.32 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 102 EMLNQIIEEAEEYKLEFYRKSIVTRE 127 (143)
Q Consensus 102 e~r~qII~eAEeyk~eFYeKR~~~~E 127 (143)
.++.|...+|+.-|++|-.+|.....
T Consensus 35 ~rLKqAK~EA~~EIe~yR~qkE~eFk 60 (119)
T 4efa_G 35 DKLKQAKTDAAKEIDSYKIQKDKELK 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999888776544
Done!