Query 032335
Match_columns 143
No_of_seqs 42 out of 44
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 20:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032335.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032335hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uala_ c.116.1.4 (A:) tRNA(m1 44.6 15 0.0011 28.3 5.0 34 70-109 194-227 (252)
2 d2vlqa1 a.28.2.1 (A:4-84) ImmE 24.2 21 0.0015 23.4 2.3 21 69-89 53-75 (81)
3 d1ayia_ a.28.2.1 (A:) ImmE7 pr 23.2 22 0.0016 23.6 2.2 21 69-89 57-79 (86)
4 d1gxha_ a.28.2.1 (A:) ImmE8 (I 23.2 23 0.0016 23.5 2.3 21 69-89 55-77 (85)
5 d1wuda1 a.60.8.1 (A:530-606) H 20.8 27 0.002 21.2 2.2 13 80-92 8-20 (77)
6 d1o4va_ c.23.8.1 (A:) N5-CAIR 16.8 60 0.0044 23.2 3.7 21 80-100 137-157 (169)
7 d2e1fa1 a.60.8.1 (A:1142-1235) 16.6 33 0.0024 21.7 2.0 13 80-92 17-29 (94)
8 d1q79a2 d.218.1.3 (A:19-214) P 15.7 38 0.0028 24.3 2.3 56 64-122 5-61 (196)
9 d1mswd_ e.8.1.3 (D:) T7 RNA po 15.5 5.4 0.00039 34.6 -3.0 40 77-116 368-409 (882)
10 d1q6ha_ d.26.1.1 (A:) Peptidyl 13.7 1.1E+02 0.0079 21.2 4.3 14 107-120 85-98 (210)
No 1
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=44.61 E-value=15 Score=28.32 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 70 PPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIE 109 (143)
Q Consensus 70 pP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~ 109 (143)
+|+-+-.---..|++||++++++. .+.+|-+++.
T Consensus 194 VPeVLlSG~H~~I~~Wr~~~sl~~------T~~~RPDL~~ 227 (252)
T d1uala_ 194 VPPVLMSGHHEEIRKWRLKQSLQR------TWLRRPELLE 227 (252)
T ss_dssp CCGGGGSCCHHHHHHHHHHHHHHH------HHHHCHHHHH
T ss_pred CCcchhCCChHHHHHHHHHHHHHH------HHHHChHHHH
Confidence 344443334567899999999853 4445555554
No 2
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=24.24 E-value=21 Score=23.44 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=14.1
Q ss_pred CCCCCCCcchhhH--HHHHHHHH
Q 032335 69 PPPSDMVPEEGFA--LREWRREN 89 (143)
Q Consensus 69 PpP~em~~EEg~~--LREWRRqN 89 (143)
|++..-..-||++ +++||..|
T Consensus 53 P~~~~edsPegIv~~IK~WRa~n 75 (81)
T d2vlqa1 53 PKEGDDDSPSGIVNTVKQWRAAN 75 (81)
T ss_dssp CCTTCCCSHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHHc
Confidence 5554444456764 89999987
No 3
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=23.23 E-value=22 Score=23.62 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=13.6
Q ss_pred CCCCCCCcchhh--HHHHHHHHH
Q 032335 69 PPPSDMVPEEGF--ALREWRREN 89 (143)
Q Consensus 69 PpP~em~~EEg~--~LREWRRqN 89 (143)
|.+..-..-||+ .+++||+.|
T Consensus 57 P~~~~edsPegI~k~IKeWRa~n 79 (86)
T d1ayia_ 57 PSDNRDDSPEGIVKEIKEWRAAN 79 (86)
T ss_dssp CCTTSCCSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHc
Confidence 444333445666 489999987
No 4
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=23.22 E-value=23 Score=23.45 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=13.6
Q ss_pred CCCCCCCcchhh--HHHHHHHHH
Q 032335 69 PPPSDMVPEEGF--ALREWRREN 89 (143)
Q Consensus 69 PpP~em~~EEg~--~LREWRRqN 89 (143)
|.+..-..-||+ .+++||..|
T Consensus 55 P~~~~edsPegIv~~IKeWRa~n 77 (85)
T d1gxha_ 55 PEGNNDGSPEAVIKEIKEWRAAN 77 (85)
T ss_dssp CCSSCSSCTHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHc
Confidence 444444445665 489999987
No 5
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=20.82 E-value=27 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIR 92 (143)
Q Consensus 80 ~~LREWRRqNA~~ 92 (143)
..|++||++-|..
T Consensus 8 ~~L~~~R~~~A~~ 20 (77)
T d1wuda1 8 AKLRKLRKSIADE 20 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999988754
No 6
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=16.84 E-value=60 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIRLEEKEKKE 100 (143)
Q Consensus 80 ~~LREWRRqNA~~LeeKEk~E 100 (143)
.-|++||+++...+.+++++=
T Consensus 137 ~kl~~~r~~~~~~v~~~~~~l 157 (169)
T d1o4va_ 137 RKVKEYKERMKREVLEKAQRL 157 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888877766543
No 7
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.58 E-value=33 Score=21.74 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q 032335 80 FALREWRRENAIR 92 (143)
Q Consensus 80 ~~LREWRRqNA~~ 92 (143)
..|++||++-|..
T Consensus 17 ~~L~~~R~~~A~~ 29 (94)
T d2e1fa1 17 GKLVEARQKHANK 29 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999998754
No 8
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.65 E-value=38 Score=24.34 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335 64 DGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122 (143)
Q Consensus 64 dgpil-PpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR 122 (143)
-+||. ++|++-.-+....|.+|=+....- -.++|..+|.+|+..-...+.+|..+-
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~---ps~ee~~~R~~vl~~L~~lv~~~~~~~ 61 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVF---EEEEELQRRILILGKLNNLVKEWIREI 61 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCS---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36765 666655434444455544332211 134578889999999999999987654
No 9
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=15.54 E-value=5.4 Score=34.59 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH
Q 032335 77 EEGFALREWRRENAIRLEEKEK-KEKEML-NQIIEEAEEYKL 116 (143)
Q Consensus 77 EEg~~LREWRRqNA~~LeeKEk-~EKe~r-~qII~eAEeyk~ 116 (143)
.....+++|++..+.......+ ..+.++ ..++.-|+.|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~s~r~~~~~~l~~A~~~~~ 409 (882)
T d1mswd_ 368 MNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFAN 409 (882)
T ss_dssp ------CCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 4556889998877655443322 222222 345666666654
No 10
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=1.1e+02 Score=21.23 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 032335 107 IIEEAEEYKLEFYR 120 (143)
Q Consensus 107 II~eAEeyk~eFYe 120 (143)
-+.++++|++++-.
T Consensus 85 ~~~~~~~~l~~~~~ 98 (210)
T d1q6ha_ 85 NEAKGKEYREKFAK 98 (210)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhcc
Confidence 34444555555443
Done!