BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032336
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q +++ ++ + SA K+ L +++E LV
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGY--THLSTGDLLRAEVSSGSARGKM---LSEIMEKGQLV 68
Query: 67 NFST-LDIQDKESVAKLVKLIDKSNGYIFAG 96
T LD+ VAK +D S G++ G
Sbjct: 69 PLETVLDMLRDAMVAK----VDTSKGFLIDG 95
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q +++ ++ + SA K+L +++E LV
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGY--THLSTGDLLRSEVSSGSA---RGKKLSEIMEKGQLV 68
Query: 67 NFST-LDIQDKESVAKLVKLIDKSNGYIFAG 96
T LD+ VAK ++ S G++ G
Sbjct: 69 PLETVLDMLRDAMVAK----VNTSKGFLIDG 95
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSL 28
V++GPPGSGK T C ++Q L
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGL 31
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSL 28
V++GPPGSGK T C ++Q L
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGL 53
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q N S V + + + KEL ++E LV
Sbjct: 34 VLGGPGSGKGTQCEKLVQKFHF---NHLSSGDLLRAEVQSGSPK--GKELKAMMERGELV 88
Query: 67 NFSTLDIQDKESVAKLVKLIDKSNGYIFAG 96
+ KE+ ++KL+DK+ ++ G
Sbjct: 89 PLEVVLALLKEA---MIKLVDKNCHFLIDG 115
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 4 GQVVIGPPG---SGKTTYCNGMSQFLSLIGSNIC 34
G++V+G G SGKTT N +SQ L G ++C
Sbjct: 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 8 IGPPGSGKTTYCNGMSQFL 26
IGPP +GK+ CN + FL
Sbjct: 132 IGPPNTGKSMLCNSLIHFL 150
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLS 27
M GQ VI GPPG+GK T + ++Q L
Sbjct: 1 MDVGQAVIFLGPPGAGKGTQASRLAQELG 29
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 8 IGPPGSGKTTYCNGMSQFL 26
IGPP +GK+ CN + FL
Sbjct: 129 IGPPNTGKSMLCNSLIHFL 147
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLS--LIGSNICCSNVFYLQAVHNSAC 49
++ G PG+GKT GM+Q L + I S +F L+ A
Sbjct: 74 LIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEAL 119
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLS 27
++IGP GSGK+T N ++ FL
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLS 27
++IGP GSGK+T N ++ FL
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLS 27
++IGP GSGK+T N ++ FL
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGS 31
+++GP GSGKTT +S L G+
Sbjct: 34 IILGPNGSGKTTLLRAISGLLPYSGN 59
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 4 GQVVIGPPGSGKTTYCNGM---SQFLSLIGSNIC--CSNVFYLQAVH 45
G ++ GPPGSGKT N S ++G N + L A+H
Sbjct: 1050 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALH 1096
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 4 GQVVIGPPGSGKTTYCNGM---SQFLSLIGSNIC--CSNVFYLQAVHN 46
G ++ GPPGSGKT N S ++G N + L A+H
Sbjct: 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHR 1316
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 9 GPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV 44
GP G+GKT + L CC F LQA+
Sbjct: 611 GPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM 646
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 9 GPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV 44
GP G+GKT + L CC F LQA+
Sbjct: 611 GPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM 646
>pdb|1XKW|A Chain A, Pyochelin Outer Membrane Receptor Fpta From Pseudomonas
Aeruginosa
Length = 665
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 98 DASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130
D S + S+ +VDWD +++ ++ F SL +
Sbjct: 224 DGSNLGLSRDTYLDVDWDRFKWDTYRAFGSLEQ 256
>pdb|1JWE|A Chain A, Nmr Structure Of The N-Terminal Domain Of E. Coli Dnab
Helicase
Length = 114
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 93 IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133
+ G+ + +A R V D+Y P H+F +A +QE
Sbjct: 14 VLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQE 54
>pdb|1B79|A Chain A, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|B Chain B, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|C Chain C, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|D Chain D, N-Terminal Domain Of Dna Replication Protein Dnab
Length = 119
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 93 IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133
+ G+ + +A R V D+Y P H+F +A +QE
Sbjct: 27 VLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQE 67
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 8 IGPPGSGKTTYCNGMSQFLSLIGSNIC--CSNVF 39
+G GSGKTT C+ ++ + G C C++ F
Sbjct: 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 6 VVIGPPGSGKTTYCNGMSQFL 26
+V G GSGKTTY + +F+
Sbjct: 175 IVCGGTGSGKTTYIKSIXEFI 195
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 7 VIGPPGSGKTTYCNGMSQF 25
++GP GSGKTT N + +F
Sbjct: 386 LVGPTGSGKTTIVNLLMRF 404
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFL 26
F +V+G SGKTT N + F+
Sbjct: 261 FSAIVVGETASGKTTTLNAIXXFI 284
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 6 VVIGPPGSGKTTYCNGMSQFL 26
+V G GSGKTTY + +F+
Sbjct: 175 IVCGGTGSGKTTYIKSIMEFI 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,260,315
Number of Sequences: 62578
Number of extensions: 153633
Number of successful extensions: 643
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 35
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)