BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032336
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54TE7|GPN2_DICDI GPN-loop GTPase 2 homolog OS=Dictyostelium discoideum GN=gpn2 PE=2
SV=1
Length = 315
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 17/110 (15%)
Query: 40 YLQAVHNSACR-----KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIF 94
YL A + R KL K + VIED+SLV+F L+I DK+SVA L+ IDKSNGYI+
Sbjct: 197 YLDAFLDKDPRLKKYSKLNKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIY 256
Query: 95 AGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK--DDDDV 142
+D + +I R W++ +Y E QEKY K +DDDV
Sbjct: 257 GSLDTNTA-ILEIQERETQWNFDKY---------QETQEKYYKSYEDDDV 296
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 29/38 (76%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
M FGQVVIGPPGSGKT YCNGMSQFL IG + N+
Sbjct: 1 MGFGQVVIGPPGSGKTVYCNGMSQFLQSIGRKVSIINL 38
>sp|Q4R579|GPN2_MACFA GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1
Length = 310
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L +IEDYSLV+F L+IQDKES+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGAQEQRSLEAMMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
D FH F S +QEKY+
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYL 296
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|Q9H9Y4|GPN2_HUMAN GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=2
Length = 310
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L +IEDYSLV+F L+IQDKES+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYI 136
D FH F S +QEKY+
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYL 296
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|Q58DD9|GPN2_PIG GPN-loop GTPase 2 OS=Sus scrofa GN=GPN2 PE=2 SV=1
Length = 310
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L +IEDYSLV+F L+IQDKES+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
D FH F S +QEKY+ D
Sbjct: 279 VGAD--------FH-FSSTLGLQEKYLAPSD 300
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 10 FGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|A6H7F2|GPN2_BOVIN GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1
Length = 310
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L +IEDYSLV+F L+IQDKES+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKESIQQVLQAVDKANGYCFGVQEQRSLEAMMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
D FH F S +QEKY+ +
Sbjct: 279 MGAD--------FH-FSSTLGLQEKYLAPSE 300
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|D4A7C0|GPN2_RAT GPN-loop GTPase 2 OS=Rattus norvegicus GN=Gpn2 PE=3 SV=1
Length = 310
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L +IEDYSLV+F L+IQDK+S+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEALMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
D FH F S +QEKY+ D
Sbjct: 279 VGAD--------FH-FSSTLGIQEKYLASSD 300
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|Q8VEJ1|GPN2_MOUSE GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=2
Length = 310
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
R+L ++L ++EDYSLV+F L+IQDK+S+ ++++ +DK+NGY F + ++E A
Sbjct: 219 RQLNEKLVQLVEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAA 278
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDDD 140
D FH F S +QEKY+ +
Sbjct: 279 MGAD--------FH-FSSTLGIQEKYLAPSE 300
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGKTTYC GMS+FL +G + N+
Sbjct: 9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNL 45
>sp|Q6PUR6|GPN2_DANRE GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1
Length = 311
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQVVIGPPGSGKTTYC GM +FLS +G + N+
Sbjct: 11 FGQVVIGPPGSGKTTYCRGMQEFLSRLGRKVVIVNL 46
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 52 LTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRN 111
L +L +VI+DYSLV+F L++QDKES+ ++++ +DK+NGY F ++ ++ A
Sbjct: 222 LNVKLAEVIQDYSLVSFVPLNVQDKESMMQVLRTVDKANGYCFGDLEERNLQAMMSAAVG 281
Query: 112 VDWDYYRYPSFHLFQSLAEVQEKYI 136
D+ F + VQEKY+
Sbjct: 282 ADFQ---------FSTTLGVQEKYL 297
>sp|Q08726|GPN2_YEAST GPN-loop GTPase 2 homolog OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YOR262W PE=1 SV=1
Length = 347
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32
M F Q+VIGPPGSGK+TYCNG SQF + IG +
Sbjct: 1 MPFAQIVIGPPGSGKSTYCNGCSQFFNAIGRH 32
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 51 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAG 96
KLT+ + +++ D++LV+F L + DKES+ L +IDK+NGYIF
Sbjct: 220 KLTETIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGA 265
>sp|Q9UTL7|GPN2_SCHPO GPN-loop GTPase 2 homolog OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC144.07c PE=3 SV=1
Length = 315
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
M F QVV+GPPGSGK+TYC GM Q LS IG + N+
Sbjct: 1 MPFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNL 38
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 52 LTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRN 111
L K +C+++ED++LV+F + +++K S+ ++++ ID++ GY + + AVR
Sbjct: 215 LNKAICELVEDFNLVSFEVVAVENKASMLRVLRKIDQAGGYAYGSTEIGGDAVWVNAVRQ 274
>sp|Q5BJ53|GPN2_XENTR GPN-loop GTPase 2 OS=Xenopus tropicalis GN=gpn2 PE=2 SV=1
Length = 303
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
++L ++L +VI+DY LV F L I+D++S+ ++ +DK++G+ F S +AV
Sbjct: 228 KRLHEKLAEVIQDYGLVTFMPLSIKDEKSLRLVLSAVDKASGFCFGETKQSLGNLMSVAV 287
Query: 110 RNVDWDYYRYPS 121
D+ + YPS
Sbjct: 288 -GADFQFTSYPS 298
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGK+TY M L+ +G N+
Sbjct: 20 FGQAVIGPPGSGKSTYVRAMQALLAQMGRKSAIINL 55
>sp|Q66KF6|GPN2_XENLA GPN-loop GTPase 2 OS=Xenopus laevis GN=gpn2 PE=2 SV=1
Length = 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV 109
++L ++L VIEDY LV F L I+D +S+ ++ +DK++G+ F S +AV
Sbjct: 228 KRLHEKLAGVIEDYGLVTFMPLSIKDDKSLQLVLSAVDKASGFCFGEAKQSLGNLMSVAV 287
Query: 110 RNVDWDYYRYPSFHLFQSLAEVQEKYIKDD 139
D+ F S QEKY+++D
Sbjct: 288 -GADFQ---------FTSTLAFQEKYVEND 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
FGQ VIGPPGSGK+TY M L+ +G N+
Sbjct: 20 FGQAVIGPPGSGKSTYVRAMQALLARMGRKSAIINL 55
>sp|Q9D3W4|GPN3_MOUSE GPN-loop GTPase 3 OS=Mus musculus GN=Gpn3 PE=2 SV=1
Length = 284
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC+ M Q + ++ N+ N +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED SL
Sbjct: 64 MEDESL 69
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
+KLTK +C +++DYS+V F D D+ES+ +++ ID
Sbjct: 212 KKLTKAVCGLVDDYSMVRFLPYDQSDEESMNIVLQHID 249
>sp|Q6R518|GPN3_RAT GPN-loop GTPase 3 OS=Rattus norvegicus GN=Gpn3 PE=2 SV=1
Length = 284
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC+ M Q + ++ N+ N +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED SL
Sbjct: 64 MEDDSL 69
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
+KLTK +C +++DYS+V F D D+ES+ +++ ID
Sbjct: 212 KKLTKPVCGLVDDYSMVRFLPYDQSDEESMNIVLQHID 249
>sp|Q9UHW5|GPN3_HUMAN GPN-loop GTPase 3 OS=Homo sapiens GN=GPN3 PE=1 SV=2
Length = 284
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC M Q + ++ N+ N + +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED SL
Sbjct: 64 MEDDSL 69
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGY 92
+KLTK +C +I+DYS+V F D D+ES+ +++ ID + Y
Sbjct: 212 KKLTKAICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQY 254
>sp|Q0P5E2|GPN3_BOVIN GPN-loop GTPase 3 OS=Bos taurus GN=GPN3 PE=2 SV=1
Length = 284
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC M Q + ++ N+ N + +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED +L
Sbjct: 64 MEDSTL 69
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
+KLT +C +I+DYS+V F D D+ES+ +++ ID
Sbjct: 212 KKLTNAICGLIDDYSMVRFLPYDQSDEESMNIVLQHID 249
>sp|Q6ZM63|GPN3_DANRE GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2
Length = 285
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 43 AVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGY 92
A+ + KLTK +C +I+DYS+V F D D+E + +++ ID S Y
Sbjct: 205 ALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDEEGINIVLQHIDFSIQY 254
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
+ Q+V+GP GSGK+TYC M + + ++ N+
Sbjct: 4 YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNL 39
>sp|Q4V7Z0|GPN3_XENLA GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1
Length = 285
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC+ M Q + ++ N+ + +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCETLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED SL
Sbjct: 64 MEDRSL 69
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
+KLT+ LC +++DYS+V F D D+E + +++ ID
Sbjct: 212 KKLTEALCGLVDDYSMVRFLPFDRSDEECMNIVLQHID 249
>sp|Q09535|PCH2_CAEEL Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans
GN=pch-2 PE=3 SV=1
Length = 424
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSL 28
++ GPPG+GKT+ C G++Q LS+
Sbjct: 176 LLTGPPGTGKTSLCKGLAQHLSI 198
>sp|Q4IQT8|GPN3_GIBZE GPN-loop GTPase 3 homolog FG00420 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_00420
PE=3 SV=1
Length = 301
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 42 QAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
Q + ++ R+L + + +IE +S++N+ LD+ +++SVA ++ ID
Sbjct: 231 QVMKGASFRRLNRAVAGLIESFSMINYHKLDVTNEDSVAAILSYID 276
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28
FG +V+GP G+GK+T+C + L+L
Sbjct: 4 FGAMVMGPAGAGKSTFCAALITHLNL 29
>sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3
SV=1
Length = 285
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGY 92
++ K + ++ED+SLV F LDI D+ES+ L++ ID S Y
Sbjct: 210 HRMNKAIGSLLEDFSLVGFVPLDITDQESLNVLLQHIDNSIQY 252
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
Q+V+GP GSGK+TYC+ M ++ I ++ N+
Sbjct: 6 QLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNL 39
>sp|Q750Q9|GPN3_ASHGO GPN-loop GTPase 3 homolog AGL117C OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=AGL117C PE=3 SV=1
Length = 271
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI 60
G +V+GP G+GK+T+CNG+ ++ +G +++ L ++ + T ++ D+I
Sbjct: 5 GVLVLGPAGAGKSTFCNGIISYMQSVGRR---AHIVNLDPAAEASEYEFTVDIRDLI 58
>sp|Q28I42|GPN3_XENTR GPN-loop GTPase 3 OS=Xenopus tropicalis GN=gpn3 PE=2 SV=1
Length = 285
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC---DV 59
+ Q+V+GP GSGK+TYC+ M Q + ++ N+ + +EL DV
Sbjct: 4 YAQLVMGPAGSGKSTYCSTMVQHCGSLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63
Query: 60 IEDYSL 65
+ED SL
Sbjct: 64 MEDRSL 69
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
+KLT+ LC +I+DYS+V F D D+E + +++ ID
Sbjct: 212 KKLTEALCGLIDDYSMVRFLPFDRSDEECMNIVLQHID 249
>sp|Q4WT40|GPN3_ASPFU GPN-loop GTPase 3 homolog AFUA_1G10640 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=AFUA_1G10640 PE=3 SV=1
Length = 293
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 30/40 (75%)
Query: 50 RKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKS 89
++L + + +I+D+S+V+F LD+QD++SVA ++ ID +
Sbjct: 229 KRLNRAVGQLIDDFSMVSFLKLDVQDEDSVAAVLSHIDDA 268
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFL 26
FG +V+GP G+GK+T+C+ + Q L
Sbjct: 4 FGVLVMGPAGAGKSTFCSALIQHL 27
>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642
PE=3 SV=2
Length = 273
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI 60
G +V+GP G GK+T+CN M ++ IG +++ L N + T ++ D+I
Sbjct: 5 GVLVLGPAGVGKSTFCNSMIAYMQSIGRR---AHIVNLDPAANPTEYEFTIDVKDLI 58
>sp|Q6PH52|PCH2_DANRE Pachytene checkpoint protein 2 homolog OS=Danio rerio GN=trip13
PE=2 SV=1
Length = 424
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C G++Q LS+
Sbjct: 161 IAWNRVVLLHGPPGTGKTSLCKGLAQKLSI 190
>sp|P00570|KAD1_BOVIN Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 PE=1 SV=2
Length = 194
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q +++ ++ + SA K+ L +++E LV
Sbjct: 13 VVGGPGSGKGTQCEKIVQKYGY--THLSTGDLLRAEVSSGSARGKM---LSEIMEKGQLV 67
Query: 67 NFST-LDIQDKESVAKLVKLIDKSNGYIFAG 96
T LD+ VAK +D S G++ G
Sbjct: 68 PLETVLDMLRDAMVAK----VDTSKGFLIDG 94
>sp|P00571|KAD1_PIG Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1
Length = 194
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q +++ ++ + SA K+ L +++E LV
Sbjct: 13 VVGGPGSGKGTQCEKIVQKYGY--THLSTGDLLRAEVSSGSARGKM---LSEIMEKGQLV 67
Query: 67 NFST-LDIQDKESVAKLVKLIDKSNGYIFAG 96
T LD+ VAK +D S G++ G
Sbjct: 68 PLETVLDMLRDAMVAK----VDTSKGFLIDG 94
>sp|A6LLN4|KAD_THEM4 Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM
12029) GN=adk PE=3 SV=1
Length = 214
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
V +GPPG+GK TY + + L + +I ++F + SA +L +++ D+++ L
Sbjct: 4 VFLGPPGAGKGTYAKELKEILGI--PHISTGDMFREEI---SAKSELGRKVEDILKRGEL 58
Query: 66 VNFSTLDIQDKESVAKLVKLIDKSNGYIFAG 96
V ++ KE ++K D G+I G
Sbjct: 59 VPDDLTNVIVKERLSKP----DCKKGFILDG 85
>sp|Q5UW69|PHNC2_HALMA Phosphonates import ATP-binding protein PhnC 2 OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=phnC2 PE=3 SV=1
Length = 271
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
+IGP G+GK+T +++ G I + + + SA R + +++ + ++++LV
Sbjct: 33 IIGPSGAGKSTLVRSINRLTEPTGGRISLDDT-EVTGLEKSALRDVRRDMGMIFQEFNLV 91
Query: 67 NFSTL 71
T+
Sbjct: 92 ERLTV 96
>sp|Q16BC5|PHNC1_ROSDO Phosphonates import ATP-binding protein PhnC 1 OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1
PE=3 SV=1
Length = 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 4 GQVV--IGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIE 61
GQV+ IGP G+GK+T +++ + + NV L + +SA R+ + + + +
Sbjct: 28 GQVLALIGPSGAGKSTLIRCVNRLVEPSSGKVYLGNV-ELTGLSSSALRRERRRMGMIFQ 86
Query: 62 DYSLVNFSTL 71
+Y+LV T+
Sbjct: 87 EYALVERLTV 96
>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140
PE=4 SV=1
Length = 912
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
++IGPPGSGK+T+C+ + S IC V +A + C K+ D + +
Sbjct: 231 LLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMA---TDSLREGKS 287
Query: 66 VNFSTLDIQDKESVAKLVKL 85
V ++ D+E ++ +KL
Sbjct: 288 VFIDRCNL-DREQRSEFIKL 306
>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1
Length = 271
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
G +V+GP G+GK+T+CN + + IG N+
Sbjct: 5 GLLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNL 39
>sp|A9IQ39|KAD_BORPD Adenylate kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM
12804 / CCUG 43448) GN=adk PE=3 SV=1
Length = 218
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCD---VIED 62
+++GPPG+GK T ++Q ++ I ++ + + K++ D ++ D
Sbjct: 4 ILLGPPGAGKGTQAAFVTQHFAI--PQISTGDMLRAAVKQGTPLGQEAKKVMDAGGLVSD 61
Query: 63 YSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDY 116
++ +QD+ +K D +NGY+F G + + + V DY
Sbjct: 62 EIIIGL----VQDR------LKQPDCANGYLFDGFPRTIPQADALKSAGVALDY 105
>sp|P39069|KAD1_RAT Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1
SV=3
Length = 194
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66
V+G PGSGK T C + Q +++ ++ + S+ K+ L ++E LV
Sbjct: 13 VVGGPGSGKGTQCEKIVQKYGY--THLSTGDLLRAEVSSGSSRGKM---LSSIMEKGELV 67
Query: 67 NFST-LDIQDKESVAKLVKLIDKSNGYIFAG 96
T LD+ +AK +D SNG++ G
Sbjct: 68 PLETVLDMLRDAMLAK----VDSSNGFLIDG 94
>sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PCH2 PE=1 SV=2
Length = 564
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSL 28
+V GPPG+GKTT C + Q LS+
Sbjct: 311 LVHGPPGTGKTTLCKALCQKLSV 333
>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2
Length = 271
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
G +V+GP G+GK+T+CN + + IG N+
Sbjct: 5 GVLVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNL 39
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 46 NSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLID 87
N KL + + ++++D+ +V F L+ ++ ESV+ ++ ID
Sbjct: 207 NPKFHKLNEAIANLVDDFGMVQFLPLEAKNPESVSTILSYID 248
>sp|Q4PF70|GPN3_USTMA GPN-loop GTPase 3 homolog UM01243 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=UM01243 PE=3 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 46 NSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGY 92
N L + L +I+D+S+V+F LD D++SV ++ ID + Y
Sbjct: 215 NPKFHSLNQALVQLIDDFSMVSFMPLDSTDEDSVGTILSHIDNAVQY 261
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
+ +V GP GSGK+T+C+ + +G N+ N+
Sbjct: 4 YAVLVSGPAGSGKSTFCSALIAHAQSLGRNVHLFNL 39
>sp|Q5XHZ9|PCH2_RAT Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus
GN=Trip13 PE=2 SV=1
Length = 432
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 169 ITWNRVVLLHGPPGTGKTSLCKALAQKLTI 198
>sp|Q15645|PCH2_HUMAN Pachytene checkpoint protein 2 homolog OS=Homo sapiens GN=TRIP13
PE=1 SV=2
Length = 432
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 169 ITWNRVVLLHGPPGTGKTSLCKALAQKLTI 198
>sp|Q3UA06|PCH2_MOUSE Pachytene checkpoint protein 2 homolog OS=Mus musculus GN=Trip13
PE=2 SV=1
Length = 432
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 169 ITWNRVVLLHGPPGTGKTSLCKALAQKLTI 198
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 27 SLIGSNICCSNVFYLQA---------VHNSACRKLTKELCDVIEDYSLVNFSTL 71
L+ +N CCS+ Y ++ V N+A RKL EL V ED + F+ L
Sbjct: 131 PLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPL 184
>sp|D3K5L7|PCH2_PIG Pachytene checkpoint protein 2 homolog OS=Sus scrofa GN=TRIP13 PE=2
SV=1
Length = 431
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 169 ITWNRVVLLHGPPGTGKTSLCKALAQKLTI 198
>sp|Q06543|GPN3_YEAST GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YLR243W PE=1 SV=1
Length = 272
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38
G +V+GP G+GK+T+CN + + +G N+
Sbjct: 5 GVMVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNL 39
>sp|Q83G05|KAD_TROWT Adenylate kinase OS=Tropheryma whipplei (strain Twist) GN=adk
PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
+++GPPGSGK T C + L + S I +VF + + A R D++
Sbjct: 4 IMVGPPGSGKGTQCGLIQSRLGI--SVIATGDVFRERMKTDMALR-------DIVSSGGY 54
Query: 66 VNFSTL-----DIQDKESVAKLVKLIDKSNGYIFAG 96
V+ ST D DKE V S+G++ G
Sbjct: 55 VSDSTTNRIVEDCLDKEDV---------SSGFVLDG 81
>sp|Q83I60|KAD_TROW8 Adenylate kinase OS=Tropheryma whipplei (strain TW08/27) GN=adk
PE=3 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65
+++GPPGSGK T C + L + S I +VF + + A R D++
Sbjct: 4 IMVGPPGSGKGTQCGLIQSRLGI--SVIATGDVFRERMKTDMALR-------DIVSSGGY 54
Query: 66 VNFSTL-----DIQDKESVAKLVKLIDKSNGYIFAG 96
V+ ST D DKE V S+G++ G
Sbjct: 55 VSDSTTNRIVEDCLDKEDV---------SSGFVLDG 81
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 26 LSLIGSNICCSNVFYLQA---------VHNSACRKLTKELCDVIEDYSLVNFSTL 71
L+ +N CCS+ Y ++ V N+A RKL EL V ED + F+ L
Sbjct: 137 FPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPL 191
>sp|E1C6Q1|PCH2_CHICK Pachytene checkpoint protein 2 homolog OS=Gallus gallus GN=TRIP13
PE=3 SV=1
Length = 432
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 9 GPPGSGKTTYCNGMSQFLSL 28
GPPG+GKT+ C ++Q L++
Sbjct: 179 GPPGTGKTSLCKALAQKLTI 198
>sp|E2R222|PCH2_CANFA Pachytene checkpoint protein 2 homolog OS=Canis familiaris
GN=TRIP13 PE=3 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 1 MVFGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ + +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 169 IAWNRVVLLHGPPGTGKTSLCKALAQKLTI 198
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 3 FGQVVI--GPPGSGKTTYCNGMSQFLSL 28
+ +VV+ GPPG+GKT+ C ++Q L++
Sbjct: 171 WNRVVLLHGPPGTGKTSLCKALAQKLTI 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,309,994
Number of Sequences: 539616
Number of extensions: 1878589
Number of successful extensions: 12428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 12329
Number of HSP's gapped (non-prelim): 171
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)