Query 032336
Match_columns 143
No_of_seqs 230 out of 2081
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 7.6E-41 1.7E-45 240.3 10.5 126 2-133 28-173 (240)
2 COG1120 FepC ABC-type cobalami 100.0 5.6E-39 1.2E-43 238.4 10.4 129 2-137 28-179 (258)
3 COG3638 ABC-type phosphate/pho 100.0 4.3E-38 9.3E-43 228.6 8.4 133 2-138 30-189 (258)
4 COG1125 OpuBA ABC-type proline 100.0 5.3E-37 1.1E-41 225.2 9.9 127 2-135 27-174 (309)
5 COG1116 TauB ABC-type nitrate/ 100.0 5E-37 1.1E-41 225.1 7.2 122 2-135 29-169 (248)
6 COG1135 AbcC ABC-type metal io 100.0 2.5E-36 5.4E-41 226.7 9.5 131 2-136 32-181 (339)
7 COG1136 SalX ABC-type antimicr 100.0 3.8E-36 8.3E-41 219.4 10.1 131 2-136 31-182 (226)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.8E-36 3.9E-41 224.2 8.1 125 2-136 30-179 (254)
9 COG3839 MalK ABC-type sugar tr 100.0 4.9E-36 1.1E-40 230.1 9.9 123 2-133 29-170 (338)
10 COG3842 PotA ABC-type spermidi 100.0 4.9E-36 1.1E-40 231.1 8.8 125 2-135 31-175 (352)
11 COG2884 FtsE Predicted ATPase 100.0 5.6E-35 1.2E-39 206.4 8.7 131 2-136 28-177 (223)
12 COG1117 PstB ABC-type phosphat 100.0 1.9E-34 4.2E-39 207.0 10.7 128 3-135 34-188 (253)
13 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-34 2.4E-39 217.6 9.5 126 2-133 28-174 (345)
14 COG1124 DppF ABC-type dipeptid 100.0 3.9E-33 8.5E-38 203.5 8.5 128 2-135 33-180 (252)
15 TIGR02314 ABC_MetN D-methionin 100.0 5.1E-33 1.1E-37 215.7 9.6 131 2-136 31-180 (343)
16 COG4181 Predicted ABC-type tra 100.0 6.3E-33 1.4E-37 193.7 8.1 131 2-136 36-186 (228)
17 COG1122 CbiO ABC-type cobalt t 100.0 7.2E-33 1.6E-37 204.6 7.8 127 3-136 31-178 (235)
18 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-32 2.4E-37 214.9 9.2 125 2-135 30-173 (356)
19 TIGR01186 proV glycine betaine 100.0 1.7E-32 3.8E-37 213.9 9.5 128 2-136 19-169 (363)
20 COG3840 ThiQ ABC-type thiamine 100.0 2.4E-32 5.1E-37 192.3 8.5 124 2-134 25-167 (231)
21 COG1137 YhbG ABC-type (unclass 100.0 5.4E-33 1.2E-37 197.9 4.6 125 2-133 30-176 (243)
22 COG1127 Ttg2A ABC-type transpo 100.0 3.9E-32 8.5E-37 198.0 8.7 129 2-134 34-183 (263)
23 TIGR00960 3a0501s02 Type II (G 100.0 6.2E-32 1.3E-36 197.4 9.7 130 2-135 29-177 (216)
24 TIGR03265 PhnT2 putative 2-ami 100.0 6.2E-32 1.3E-36 210.5 10.0 125 2-135 30-173 (353)
25 COG4148 ModC ABC-type molybdat 100.0 2.4E-32 5.1E-37 203.0 7.1 128 3-133 25-165 (352)
26 COG4559 ABC-type hemin transpo 100.0 1.2E-31 2.7E-36 192.5 10.5 127 2-135 27-180 (259)
27 COG4175 ProV ABC-type proline/ 100.0 5.3E-32 1.1E-36 204.0 8.9 130 2-135 54-203 (386)
28 PRK11432 fbpC ferric transport 100.0 7.7E-32 1.7E-36 209.7 10.1 125 2-135 32-175 (351)
29 COG0410 LivF ABC-type branched 100.0 8.4E-32 1.8E-36 195.3 9.5 129 2-137 29-177 (237)
30 PRK09536 btuD corrinoid ABC tr 100.0 9.4E-32 2E-36 212.1 9.6 128 2-136 29-179 (402)
31 COG1131 CcmA ABC-type multidru 100.0 1.4E-31 3E-36 203.9 10.1 126 2-135 31-175 (293)
32 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-31 3.6E-36 197.4 9.5 127 2-135 26-175 (235)
33 PRK09452 potA putrescine/sperm 100.0 1.3E-31 2.9E-36 209.9 9.2 125 2-135 40-183 (375)
34 COG4598 HisP ABC-type histidin 100.0 1.9E-31 4.2E-36 187.8 9.0 128 3-133 33-189 (256)
35 PRK11607 potG putrescine trans 100.0 2.8E-31 6.1E-36 208.2 10.0 125 2-135 45-188 (377)
36 TIGR01188 drrA daunorubicin re 100.0 4.2E-31 9.2E-36 202.0 10.1 126 2-135 19-163 (302)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 2.8E-31 6E-36 207.3 9.3 125 2-135 31-176 (362)
38 TIGR02868 CydC thiol reductant 100.0 3.2E-31 6.9E-36 215.6 9.5 127 2-136 361-510 (529)
39 PRK11153 metN DL-methionine tr 100.0 4.3E-31 9.4E-36 205.1 9.7 128 2-136 31-180 (343)
40 cd03225 ABC_cobalt_CbiO_domain 100.0 6.8E-31 1.5E-35 191.2 10.0 127 2-135 27-173 (211)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.4E-31 9.6E-36 193.0 9.0 127 2-135 30-179 (218)
42 PRK11000 maltose/maltodextrin 100.0 4.3E-31 9.4E-36 206.8 9.4 125 2-135 29-172 (369)
43 cd03265 ABC_DrrA DrrA is the A 100.0 6.6E-31 1.4E-35 192.5 9.7 126 2-135 26-170 (220)
44 cd03256 ABC_PhnC_transporter A 100.0 7.1E-31 1.5E-35 194.4 9.9 127 2-135 27-183 (241)
45 TIGR01166 cbiO cobalt transpor 100.0 8.4E-31 1.8E-35 188.1 9.6 129 2-135 18-166 (190)
46 TIGR02211 LolD_lipo_ex lipopro 100.0 8.3E-31 1.8E-35 191.9 9.8 130 2-135 31-180 (221)
47 cd03292 ABC_FtsE_transporter F 100.0 7.8E-31 1.7E-35 191.1 9.5 130 2-135 27-175 (214)
48 cd03264 ABC_drug_resistance_li 100.0 7.7E-31 1.7E-35 191.0 9.4 124 4-135 27-169 (211)
49 PRK10851 sulfate/thiosulfate t 100.0 6.5E-31 1.4E-35 204.7 9.4 125 2-135 28-175 (353)
50 TIGR02673 FtsE cell division A 100.0 8.3E-31 1.8E-35 191.1 9.4 130 2-135 28-176 (214)
51 TIGR02315 ABC_phnC phosphonate 100.0 9.8E-31 2.1E-35 194.0 9.8 130 2-135 28-184 (243)
52 cd03259 ABC_Carb_Solutes_like 100.0 5.8E-31 1.3E-35 191.9 8.4 125 2-135 26-169 (213)
53 PRK13537 nodulation ABC transp 100.0 8.7E-31 1.9E-35 200.7 9.7 126 2-135 33-177 (306)
54 cd03266 ABC_NatA_sodium_export 100.0 9.4E-31 2E-35 191.3 9.4 126 2-135 31-175 (218)
55 PRK11144 modC molybdate transp 100.0 7.2E-31 1.6E-35 204.5 9.2 131 2-135 24-167 (352)
56 PRK11629 lolD lipoprotein tran 100.0 1.2E-30 2.7E-35 192.6 9.7 127 2-135 35-184 (233)
57 COG2274 SunT ABC-type bacterio 100.0 6.8E-31 1.5E-35 218.5 9.1 129 2-137 499-650 (709)
58 PRK10070 glycine betaine trans 100.0 9.6E-31 2.1E-35 206.3 9.5 128 2-136 54-204 (400)
59 cd03226 ABC_cobalt_CbiO_domain 100.0 9.1E-31 2E-35 189.9 8.7 124 2-135 26-165 (205)
60 cd03263 ABC_subfamily_A The AB 100.0 1.3E-30 2.7E-35 190.8 9.4 126 2-135 28-172 (220)
61 PRK11174 cysteine/glutathione 100.0 1.5E-30 3.2E-35 214.0 10.4 128 2-137 376-526 (588)
62 PRK15079 oligopeptide ABC tran 100.0 1.3E-30 2.7E-35 201.6 9.2 131 2-136 47-201 (331)
63 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-30 2.8E-35 189.4 8.8 125 2-135 26-165 (208)
64 PRK13650 cbiO cobalt transport 100.0 1.7E-30 3.6E-35 196.8 9.5 128 2-136 33-180 (279)
65 PRK13637 cbiO cobalt transport 100.0 1.8E-30 3.9E-35 197.3 9.5 127 2-135 33-183 (287)
66 PRK13647 cbiO cobalt transport 100.0 2E-30 4.3E-35 195.9 9.6 127 2-135 31-177 (274)
67 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-30 4.4E-35 191.6 9.4 127 2-135 26-182 (236)
68 TIGR03608 L_ocin_972_ABC putat 100.0 2E-30 4.4E-35 187.9 9.1 130 2-135 24-173 (206)
69 PRK10908 cell division protein 100.0 2.9E-30 6.4E-35 189.3 10.0 130 2-135 28-176 (222)
70 PRK11308 dppF dipeptide transp 100.0 2E-30 4.4E-35 200.2 9.5 131 2-136 41-194 (327)
71 COG4161 ArtP ABC-type arginine 100.0 2.4E-30 5.1E-35 179.7 8.8 129 2-133 28-178 (242)
72 TIGR02142 modC_ABC molybdenum 100.0 2E-30 4.2E-35 202.2 9.4 131 2-135 23-170 (354)
73 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-30 5.1E-35 192.1 9.2 127 2-135 27-174 (242)
74 PRK13634 cbiO cobalt transport 100.0 2.5E-30 5.5E-35 196.8 9.6 132 2-136 33-185 (290)
75 PRK13646 cbiO cobalt transport 100.0 2.4E-30 5.3E-35 196.5 9.4 131 2-135 33-184 (286)
76 PRK10584 putative ABC transpor 100.0 3.3E-30 7.2E-35 189.6 9.6 127 2-135 36-185 (228)
77 TIGR03415 ABC_choXWV_ATP choli 100.0 3.2E-30 6.8E-35 202.2 10.0 132 2-136 50-204 (382)
78 PRK13536 nodulation factor exp 100.0 2.8E-30 6E-35 200.3 9.5 126 2-135 67-211 (340)
79 PRK13643 cbiO cobalt transport 100.0 2.8E-30 6E-35 196.4 9.3 131 2-135 32-183 (288)
80 COG4525 TauB ABC-type taurine 100.0 2.1E-30 4.6E-35 184.4 8.0 123 2-136 31-172 (259)
81 TIGR01288 nodI ATP-binding ABC 100.0 3.2E-30 6.9E-35 197.3 9.5 126 2-135 30-174 (303)
82 COG4619 ABC-type uncharacteriz 100.0 3.4E-30 7.4E-35 179.5 8.8 125 2-133 29-170 (223)
83 cd03262 ABC_HisP_GlnQ_permease 100.0 3.9E-30 8.5E-35 187.3 9.5 129 2-135 26-174 (213)
84 cd03258 ABC_MetN_methionine_tr 100.0 4.3E-30 9.3E-35 189.6 9.8 127 2-135 31-179 (233)
85 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-30 5.8E-35 215.8 9.7 129 2-137 479-629 (686)
86 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.3E-30 9.4E-35 187.0 9.6 126 2-136 24-168 (211)
87 cd03235 ABC_Metallic_Cations A 100.0 4.8E-30 1E-34 187.0 9.8 122 2-135 25-171 (213)
88 PRK14250 phosphate ABC transpo 100.0 4.1E-30 9E-35 190.8 9.4 127 2-135 29-170 (241)
89 COG0411 LivG ABC-type branched 100.0 9.6E-31 2.1E-35 191.1 5.7 125 2-133 30-186 (250)
90 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.8E-30 6E-35 189.2 8.1 122 2-135 30-170 (220)
91 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-30 7.6E-35 189.4 8.7 127 2-136 26-181 (227)
92 PRK13641 cbiO cobalt transport 100.0 4.6E-30 1E-34 195.0 9.6 131 2-135 33-184 (287)
93 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.8E-30 8.3E-35 215.5 10.0 129 2-137 505-656 (710)
94 cd03218 ABC_YhbG The ABC trans 100.0 5.2E-30 1.1E-34 188.9 9.5 127 2-135 26-172 (232)
95 PRK11176 lipid transporter ATP 100.0 4.5E-30 9.8E-35 210.9 10.1 128 2-136 369-520 (582)
96 cd03224 ABC_TM1139_LivF_branch 100.0 7.4E-30 1.6E-34 186.9 10.0 127 2-135 26-171 (222)
97 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.7E-30 1E-34 193.4 9.1 131 2-136 50-200 (269)
98 PRK11831 putative ABC transpor 100.0 6.2E-30 1.3E-34 192.7 9.7 130 2-135 33-182 (269)
99 cd03269 ABC_putative_ATPase Th 100.0 5.3E-30 1.2E-34 186.4 8.9 123 2-135 26-167 (210)
100 TIGR03522 GldA_ABC_ATP gliding 100.0 7.7E-30 1.7E-34 195.0 10.1 126 2-135 28-172 (301)
101 PRK10790 putative multidrug tr 100.0 5E-30 1.1E-34 211.1 9.7 128 2-136 367-516 (592)
102 PRK10575 iron-hydroxamate tran 100.0 5.9E-30 1.3E-34 192.4 9.3 127 2-135 37-186 (265)
103 PRK13631 cbiO cobalt transport 100.0 4.6E-30 1E-34 197.7 8.8 132 2-136 52-216 (320)
104 PRK11300 livG leucine/isoleuci 100.0 6.4E-30 1.4E-34 190.9 9.4 127 2-135 31-192 (255)
105 cd03301 ABC_MalK_N The N-termi 100.0 4.4E-30 9.5E-35 187.2 8.2 125 2-135 26-169 (213)
106 cd03230 ABC_DR_subfamily_A Thi 100.0 3.2E-30 6.9E-35 182.8 7.1 109 2-135 26-134 (173)
107 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-29 2.3E-34 185.4 9.9 131 3-136 24-171 (214)
108 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-29 2.3E-34 184.0 9.7 126 2-135 26-164 (201)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.6E-30 2.1E-34 188.2 9.6 127 2-136 27-172 (236)
110 PRK10247 putative ABC transpor 100.0 1.1E-29 2.3E-34 186.9 9.8 127 2-135 33-176 (225)
111 PRK13635 cbiO cobalt transport 100.0 8.3E-30 1.8E-34 193.0 9.4 128 2-136 33-180 (279)
112 PRK13651 cobalt transporter AT 100.0 7E-30 1.5E-34 195.6 9.0 132 2-136 33-205 (305)
113 TIGR03411 urea_trans_UrtD urea 100.0 9.3E-30 2E-34 188.7 9.2 128 2-136 28-183 (242)
114 PRK13638 cbiO cobalt transport 100.0 1.1E-29 2.4E-34 191.5 9.7 129 2-135 27-175 (271)
115 PRK11247 ssuB aliphatic sulfon 100.0 1.1E-29 2.5E-34 190.3 9.6 122 2-135 38-172 (257)
116 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-29 2.4E-34 188.2 9.5 129 2-135 27-175 (240)
117 cd03296 ABC_CysA_sulfate_impor 100.0 6.9E-30 1.5E-34 189.3 8.3 125 2-135 28-175 (239)
118 PRK10253 iron-enterobactin tra 100.0 1.7E-29 3.7E-34 189.9 10.4 127 2-135 33-182 (265)
119 PRK11022 dppD dipeptide transp 100.0 8.7E-30 1.9E-34 196.6 9.0 128 2-136 33-193 (326)
120 TIGR01189 ccmA heme ABC export 100.0 1.3E-29 2.8E-34 183.0 9.3 126 2-135 26-166 (198)
121 TIGR01193 bacteriocin_ABC ABC- 100.0 9.8E-30 2.1E-34 213.1 10.0 128 2-136 500-651 (708)
122 cd03246 ABCC_Protease_Secretio 100.0 5.1E-30 1.1E-34 181.7 7.0 108 2-135 28-135 (173)
123 TIGR03410 urea_trans_UrtE urea 100.0 2.1E-29 4.6E-34 185.6 10.5 127 2-135 26-170 (230)
124 PRK11231 fecE iron-dicitrate t 100.0 2E-29 4.4E-34 188.4 10.3 127 2-135 28-177 (255)
125 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-29 2.7E-34 207.8 10.0 128 2-136 358-509 (571)
126 PRK13538 cytochrome c biogenes 100.0 1.8E-29 4E-34 183.1 9.7 126 2-135 27-168 (204)
127 TIGR01277 thiQ thiamine ABC tr 100.0 1.5E-29 3.3E-34 184.5 9.3 125 2-135 24-167 (213)
128 PRK13648 cbiO cobalt transport 100.0 1.2E-29 2.6E-34 191.1 8.8 127 2-135 35-181 (269)
129 PRK13548 hmuV hemin importer A 100.0 2.4E-29 5.2E-34 188.5 10.3 127 2-135 28-179 (258)
130 PRK13649 cbiO cobalt transport 100.0 1.8E-29 3.9E-34 191.0 9.7 131 2-135 33-184 (280)
131 PRK14247 phosphate ABC transpo 100.0 1.8E-29 4E-34 188.1 9.6 127 2-135 29-185 (250)
132 TIGR00972 3a0107s01c2 phosphat 100.0 1.9E-29 4E-34 187.8 9.6 128 2-135 27-183 (247)
133 PRK13636 cbiO cobalt transport 100.0 1.8E-29 3.9E-34 191.5 9.6 130 2-136 32-181 (283)
134 PRK11264 putative amino-acid A 100.0 2E-29 4.4E-34 187.7 9.7 131 2-136 29-184 (250)
135 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-29 3.3E-34 185.1 8.8 126 2-135 30-179 (220)
136 PRK13644 cbiO cobalt transport 100.0 1.7E-29 3.8E-34 190.8 9.4 127 2-135 28-175 (274)
137 PRK11160 cysteine/glutathione 100.0 1.7E-29 3.7E-34 207.5 9.8 128 2-136 366-515 (574)
138 TIGR02857 CydD thiol reductant 100.0 1.6E-29 3.5E-34 205.7 9.6 128 2-136 348-498 (529)
139 cd03229 ABC_Class3 This class 100.0 6.5E-30 1.4E-34 181.9 6.3 113 2-136 26-140 (178)
140 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-29 4.1E-34 185.3 9.0 127 2-135 31-184 (228)
141 PRK13652 cbiO cobalt transport 100.0 2.6E-29 5.6E-34 190.1 9.9 127 2-135 30-176 (277)
142 PRK13632 cbiO cobalt transport 100.0 2E-29 4.4E-34 190.1 9.3 127 2-135 35-181 (271)
143 KOG0057 Mitochondrial Fe/S clu 100.0 1.1E-29 2.4E-34 202.1 8.2 127 2-137 378-528 (591)
144 TIGR02769 nickel_nikE nickel i 100.0 1.8E-29 3.8E-34 189.8 8.8 126 2-134 37-188 (265)
145 KOG0058 Peptide exporter, ABC 100.0 2.2E-29 4.7E-34 205.6 10.0 124 2-132 494-640 (716)
146 PRK10895 lipopolysaccharide AB 100.0 2.4E-29 5.3E-34 186.5 9.4 127 2-135 29-176 (241)
147 PRK13657 cyclic beta-1,2-gluca 100.0 2.3E-29 5E-34 207.1 10.2 128 2-136 361-511 (588)
148 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-29 4.2E-34 211.4 9.8 129 2-137 507-658 (711)
149 PRK13540 cytochrome c biogenes 100.0 2.2E-29 4.7E-34 182.2 8.7 126 2-135 27-166 (200)
150 PRK10771 thiQ thiamine transpo 100.0 3.1E-29 6.7E-34 185.1 9.6 125 2-135 25-168 (232)
151 PRK11124 artP arginine transpo 100.0 2.9E-29 6.4E-34 186.1 9.5 131 2-135 28-180 (242)
152 PRK15112 antimicrobial peptide 100.0 2.8E-29 6E-34 189.0 9.4 127 2-135 39-188 (267)
153 cd03244 ABCC_MRP_domain2 Domai 100.0 3.7E-29 7.9E-34 183.2 9.8 127 2-135 30-178 (221)
154 PRK11614 livF leucine/isoleuci 100.0 4.9E-29 1.1E-33 184.5 10.4 127 2-135 31-176 (237)
155 cd03254 ABCC_Glucan_exporter_l 100.0 2.4E-29 5.1E-34 185.1 8.6 127 2-135 29-178 (229)
156 PRK14269 phosphate ABC transpo 100.0 4.3E-29 9.2E-34 185.8 10.1 127 2-135 28-181 (246)
157 COG4604 CeuD ABC-type enteroch 100.0 1.4E-29 3E-34 180.3 7.0 128 2-136 27-175 (252)
158 PRK15093 antimicrobial peptide 100.0 3.5E-29 7.5E-34 193.6 9.8 128 2-136 33-198 (330)
159 TIGR02982 heterocyst_DevA ABC 100.0 4E-29 8.6E-34 183.2 9.4 130 2-135 31-180 (220)
160 cd03228 ABCC_MRP_Like The MRP 100.0 1.6E-29 3.5E-34 178.9 7.0 108 2-135 28-135 (171)
161 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.5E-29 9.6E-34 181.3 9.3 123 2-135 34-164 (207)
162 cd03214 ABC_Iron-Siderophores_ 100.0 3.8E-29 8.1E-34 178.3 8.7 107 2-135 25-136 (180)
163 PRK14242 phosphate transporter 100.0 4.8E-29 1E-33 186.1 9.6 129 2-135 32-188 (253)
164 cd03252 ABCC_Hemolysin The ABC 100.0 3.3E-29 7.2E-34 185.3 8.7 127 2-135 28-177 (237)
165 TIGR03005 ectoine_ehuA ectoine 100.0 4.9E-29 1.1E-33 186.0 9.6 130 2-135 26-185 (252)
166 COG4988 CydD ABC-type transpor 100.0 4.3E-29 9.3E-34 200.2 9.9 128 2-136 347-496 (559)
167 PRK13640 cbiO cobalt transport 100.0 3.9E-29 8.5E-34 189.5 9.2 127 2-135 33-182 (282)
168 TIGR03375 type_I_sec_LssB type 100.0 3.4E-29 7.4E-34 209.4 9.7 128 2-136 491-641 (694)
169 PRK09473 oppD oligopeptide tra 100.0 3.8E-29 8.2E-34 193.3 9.2 128 2-136 42-201 (330)
170 TIGR03873 F420-0_ABC_ATP propo 100.0 7.6E-29 1.6E-33 185.4 10.5 127 2-135 27-176 (256)
171 COG1132 MdlB ABC-type multidru 100.0 4E-29 8.7E-34 204.9 9.8 129 2-137 355-506 (567)
172 PF00005 ABC_tran: ABC transpo 100.0 3.2E-29 7E-34 170.7 7.8 117 2-125 11-137 (137)
173 PRK14267 phosphate ABC transpo 100.0 5.4E-29 1.2E-33 185.8 9.6 129 2-135 30-188 (253)
174 PRK13633 cobalt transporter AT 100.0 4.8E-29 1E-33 188.9 9.5 127 2-135 36-183 (280)
175 PRK10522 multidrug transporter 100.0 3.3E-29 7.1E-34 204.7 9.1 127 2-135 349-488 (547)
176 PRK11248 tauB taurine transpor 100.0 4.2E-29 9.1E-34 187.0 8.9 122 2-135 27-167 (255)
177 TIGR01187 potA spermidine/putr 100.0 2.9E-29 6.4E-34 193.6 8.1 120 7-135 1-139 (325)
178 PRK14259 phosphate ABC transpo 100.0 7.6E-29 1.7E-33 186.8 10.2 129 2-135 39-193 (269)
179 cd03215 ABC_Carb_Monos_II This 100.0 3.7E-29 8.1E-34 178.6 7.8 114 2-135 26-143 (182)
180 TIGR02770 nickel_nikD nickel i 100.0 5.3E-29 1.1E-33 183.7 8.6 125 2-135 12-164 (230)
181 TIGR01184 ntrCD nitrate transp 100.0 7.5E-29 1.6E-33 183.0 9.5 122 2-135 11-153 (230)
182 PRK13642 cbiO cobalt transport 100.0 6E-29 1.3E-33 188.1 9.1 128 2-136 33-180 (277)
183 cd03247 ABCC_cytochrome_bd The 100.0 3.5E-29 7.6E-34 178.1 7.2 110 2-135 28-137 (178)
184 TIGR01978 sufC FeS assembly AT 100.0 8.9E-29 1.9E-33 183.4 9.7 127 2-135 26-183 (243)
185 PRK10261 glutathione transport 100.0 4.3E-29 9.4E-34 206.7 8.8 131 2-136 350-503 (623)
186 PRK15439 autoinducer 2 ABC tra 100.0 7.6E-29 1.6E-33 201.2 10.0 127 2-135 37-179 (510)
187 TIGR03771 anch_rpt_ABC anchore 100.0 8.7E-29 1.9E-33 181.9 9.4 122 2-135 6-152 (223)
188 PRK10619 histidine/lysine/argi 100.0 7.2E-29 1.6E-33 185.7 9.1 132 2-136 31-192 (257)
189 PRK10762 D-ribose transporter 100.0 4.8E-29 1.1E-33 201.9 8.8 127 2-135 30-180 (501)
190 PRK13639 cbiO cobalt transport 100.0 8.5E-29 1.8E-33 187.1 9.5 129 2-135 28-176 (275)
191 PRK11701 phnK phosphonate C-P 100.0 7.4E-29 1.6E-33 185.7 9.1 132 2-136 32-191 (258)
192 PRK14273 phosphate ABC transpo 100.0 9.7E-29 2.1E-33 184.6 9.7 129 2-135 33-189 (254)
193 PRK10744 pstB phosphate transp 100.0 8.9E-29 1.9E-33 185.5 9.4 129 2-135 39-195 (260)
194 KOG0055 Multidrug/pheromone ex 100.0 6.9E-29 1.5E-33 212.0 9.6 125 2-133 379-526 (1228)
195 COG1123 ATPase components of v 100.0 9E-29 1.9E-33 198.6 9.7 129 2-135 317-468 (539)
196 TIGR02204 MsbA_rel ABC transpo 100.0 9E-29 2E-33 202.9 9.9 128 2-136 366-516 (576)
197 PRK13645 cbiO cobalt transport 100.0 8.3E-29 1.8E-33 188.3 8.9 131 2-135 37-189 (289)
198 PRK09700 D-allose transporter 100.0 7.1E-29 1.5E-33 201.3 8.9 128 2-136 31-185 (510)
199 cd03251 ABCC_MsbA MsbA is an e 100.0 1.4E-28 3.1E-33 181.5 9.7 127 2-135 28-177 (234)
200 PRK09984 phosphonate/organopho 100.0 1.5E-28 3.3E-33 184.3 9.6 131 2-135 30-191 (262)
201 cd03253 ABCC_ATM1_transporter 100.0 1.2E-28 2.7E-33 182.0 8.9 127 2-135 27-176 (236)
202 TIGR02323 CP_lyasePhnK phospho 100.0 1.3E-28 2.8E-33 183.8 9.0 131 2-135 29-187 (253)
203 PRK13539 cytochrome c biogenes 100.0 1.6E-28 3.5E-33 178.6 9.3 124 2-135 28-166 (207)
204 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-28 2.7E-33 201.7 9.6 127 2-135 368-509 (555)
205 PRK13549 xylose transporter AT 100.0 1E-28 2.2E-33 200.3 8.9 128 2-136 31-183 (506)
206 COG4555 NatA ABC-type Na+ tran 100.0 9.3E-29 2E-33 176.5 7.6 126 2-135 28-172 (245)
207 PRK14268 phosphate ABC transpo 100.0 1.7E-28 3.8E-33 183.7 9.5 128 2-135 38-193 (258)
208 PRK14235 phosphate transporter 100.0 1.8E-28 3.9E-33 184.6 9.6 129 2-135 45-202 (267)
209 PRK13543 cytochrome c biogenes 100.0 1.5E-28 3.3E-33 179.5 8.7 124 2-135 37-176 (214)
210 PRK10938 putative molybdenum t 100.0 1.7E-28 3.7E-33 198.2 9.9 127 2-135 29-174 (490)
211 PRK09700 D-allose transporter 100.0 1.5E-28 3.3E-33 199.4 9.6 127 2-135 289-448 (510)
212 PRK03695 vitamin B12-transport 100.0 2.9E-28 6.3E-33 181.7 10.3 126 2-135 22-172 (248)
213 cd03267 ABC_NatA_like Similar 100.0 1.6E-28 3.5E-33 181.8 8.8 126 2-135 47-192 (236)
214 PRK14241 phosphate transporter 100.0 2.3E-28 5E-33 183.0 9.7 129 2-135 30-187 (258)
215 cd03248 ABCC_TAP TAP, the Tran 100.0 2E-28 4.4E-33 179.9 9.2 127 2-135 40-189 (226)
216 PRK15056 manganese/iron transp 100.0 1.9E-28 4.1E-33 184.9 9.1 124 2-135 33-181 (272)
217 PRK14254 phosphate ABC transpo 100.0 2.2E-28 4.8E-33 185.7 9.5 128 2-135 65-219 (285)
218 TIGR02324 CP_lyasePhnL phospho 100.0 1.9E-28 4.1E-33 179.8 8.9 131 2-135 34-188 (224)
219 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.8E-28 4E-33 185.3 8.6 125 2-134 30-176 (275)
220 TIGR01846 type_I_sec_HlyB type 100.0 2.5E-28 5.4E-33 204.3 10.2 128 2-136 483-633 (694)
221 PRK10789 putative multidrug tr 100.0 2.3E-28 5E-33 200.6 9.7 128 2-136 341-491 (569)
222 PRK13547 hmuV hemin importer A 100.0 4.5E-28 9.7E-33 183.0 10.5 128 2-136 27-194 (272)
223 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.3E-28 4.9E-33 180.9 8.7 127 2-135 29-178 (238)
224 cd03233 ABC_PDR_domain1 The pl 100.0 1.6E-28 3.4E-33 178.1 7.2 120 2-135 33-157 (202)
225 PRK15134 microcin C ABC transp 100.0 2.6E-28 5.7E-33 198.8 9.4 127 2-135 35-195 (529)
226 cd03299 ABC_ModC_like Archeal 100.0 3.6E-28 7.7E-33 179.8 9.2 125 2-135 25-168 (235)
227 PRK10982 galactose/methyl gala 100.0 2.4E-28 5.3E-33 197.4 9.1 127 2-135 24-173 (491)
228 cd03216 ABC_Carb_Monos_I This 100.0 2E-28 4.4E-33 172.1 7.4 95 2-135 26-121 (163)
229 cd03290 ABCC_SUR1_N The SUR do 100.0 3.1E-28 6.6E-33 178.2 8.5 127 2-135 27-179 (218)
230 PRK11288 araG L-arabinose tran 100.0 3E-28 6.6E-33 197.3 9.1 128 2-136 30-180 (501)
231 PTZ00265 multidrug resistance 100.0 2.8E-28 6E-33 215.9 9.5 128 2-136 1194-1398(1466)
232 TIGR03740 galliderm_ABC gallid 100.0 2.4E-28 5.2E-33 179.3 7.6 123 2-135 26-163 (223)
233 PRK14248 phosphate ABC transpo 100.0 4.9E-28 1.1E-32 182.2 9.4 129 2-135 47-203 (268)
234 TIGR01842 type_I_sec_PrtD type 99.9 4.9E-28 1.1E-32 197.7 10.0 128 2-136 344-494 (544)
235 PRK09544 znuC high-affinity zi 99.9 3.5E-28 7.6E-33 181.6 8.4 116 2-135 30-159 (251)
236 PRK14245 phosphate ABC transpo 99.9 6.3E-28 1.4E-32 179.8 9.6 128 2-135 29-185 (250)
237 PRK14243 phosphate transporter 99.9 6.6E-28 1.4E-32 181.2 9.8 129 2-135 36-190 (264)
238 cd03234 ABCG_White The White s 99.9 7.2E-28 1.6E-32 177.1 9.6 124 2-135 33-182 (226)
239 PRK10418 nikD nickel transport 99.9 4.8E-28 1E-32 181.0 8.8 125 2-135 29-179 (254)
240 PRK10419 nikE nickel transport 99.9 5.6E-28 1.2E-32 182.0 9.2 130 2-135 38-190 (268)
241 PRK14262 phosphate ABC transpo 99.9 6.3E-28 1.4E-32 179.8 9.3 129 2-135 29-185 (250)
242 PRK14251 phosphate ABC transpo 99.9 6.9E-28 1.5E-32 179.7 9.5 129 2-135 30-186 (251)
243 TIGR01192 chvA glucan exporter 99.9 5.7E-28 1.2E-32 198.9 10.0 128 2-136 361-511 (585)
244 PRK14274 phosphate ABC transpo 99.9 7.3E-28 1.6E-32 180.4 9.6 129 2-135 38-194 (259)
245 PRK10762 D-ribose transporter 99.9 4.8E-28 1E-32 196.1 9.2 127 2-135 278-434 (501)
246 PRK14240 phosphate transporter 99.9 7.5E-28 1.6E-32 179.4 9.5 129 2-135 29-185 (250)
247 PLN03232 ABC transporter C fam 99.9 5.1E-28 1.1E-32 215.0 10.0 128 2-136 1262-1411(1495)
248 PRK14249 phosphate ABC transpo 99.9 8.2E-28 1.8E-32 179.3 9.6 129 2-135 30-186 (251)
249 PRK09580 sufC cysteine desulfu 99.9 5.6E-28 1.2E-32 179.7 8.7 128 2-136 27-185 (248)
250 PRK10261 glutathione transport 99.9 4.1E-28 8.9E-33 200.9 8.6 131 2-135 42-207 (623)
251 cd03213 ABCG_EPDR ABCG transpo 99.9 4.5E-28 9.8E-33 174.7 7.6 114 2-135 35-150 (194)
252 KOG0055 Multidrug/pheromone ex 99.9 8.7E-28 1.9E-32 205.3 10.6 124 2-132 1016-1162(1228)
253 cd03288 ABCC_SUR2 The SUR doma 99.9 9.4E-28 2E-32 179.7 9.5 127 2-135 47-195 (257)
254 PRK14270 phosphate ABC transpo 99.9 1.1E-27 2.4E-32 178.6 9.8 129 2-135 30-186 (251)
255 cd03300 ABC_PotA_N PotA is an 99.9 8.9E-28 1.9E-32 177.3 9.1 125 2-135 26-169 (232)
256 PRK13541 cytochrome c biogenes 99.9 7.4E-28 1.6E-32 173.6 8.4 122 2-134 26-161 (195)
257 PRK14239 phosphate transporter 99.9 1.1E-27 2.5E-32 178.5 9.6 129 2-135 31-187 (252)
258 PLN03130 ABC transporter C fam 99.9 7.5E-28 1.6E-32 214.7 10.0 128 2-136 1265-1414(1622)
259 PRK11288 araG L-arabinose tran 99.9 5.8E-28 1.3E-32 195.6 8.5 128 2-136 279-436 (501)
260 PRK14256 phosphate ABC transpo 99.9 1.1E-27 2.5E-32 178.6 9.4 129 2-135 30-187 (252)
261 PRK14237 phosphate transporter 99.9 1.2E-27 2.6E-32 180.1 9.6 129 2-135 46-202 (267)
262 PRK14263 phosphate ABC transpo 99.9 1.2E-27 2.6E-32 179.7 9.4 130 2-136 34-189 (261)
263 TIGR03269 met_CoM_red_A2 methy 99.9 7.3E-28 1.6E-32 195.8 8.7 131 2-136 310-467 (520)
264 PRK14260 phosphate ABC transpo 99.9 1.4E-27 3E-32 178.9 9.5 128 2-135 33-189 (259)
265 PRK15439 autoinducer 2 ABC tra 99.9 1E-27 2.2E-32 194.6 9.4 127 2-135 289-442 (510)
266 PRK14265 phosphate ABC transpo 99.9 1.7E-27 3.7E-32 179.9 9.9 128 2-135 46-200 (274)
267 PRK14275 phosphate ABC transpo 99.9 1.4E-27 3.1E-32 181.4 9.5 129 2-135 65-221 (286)
268 PRK14244 phosphate ABC transpo 99.9 1.4E-27 2.9E-32 178.1 9.1 129 2-135 31-188 (251)
269 cd03237 ABC_RNaseL_inhibitor_d 99.9 8.4E-28 1.8E-32 179.2 7.9 115 2-135 25-154 (246)
270 TIGR00968 3a0106s01 sulfate AB 99.9 1.3E-27 2.9E-32 176.9 8.9 125 2-135 26-169 (237)
271 TIGR02633 xylG D-xylose ABC tr 99.9 1.5E-27 3.2E-32 193.2 9.7 127 2-135 27-180 (500)
272 PRK14253 phosphate ABC transpo 99.9 2.2E-27 4.7E-32 176.8 9.7 128 2-135 29-184 (249)
273 PRK14272 phosphate ABC transpo 99.9 2.5E-27 5.5E-32 176.6 10.0 129 2-135 30-187 (252)
274 COG4618 ArpD ABC-type protease 99.9 1.2E-27 2.6E-32 189.2 8.6 122 2-130 362-506 (580)
275 TIGR02633 xylG D-xylose ABC tr 99.9 2E-27 4.2E-32 192.5 10.0 127 2-135 286-442 (500)
276 PRK14271 phosphate ABC transpo 99.9 2.2E-27 4.8E-32 179.5 9.6 127 2-135 47-202 (276)
277 cd03232 ABC_PDR_domain2 The pl 99.9 1.4E-27 3E-32 171.9 8.1 114 2-136 33-148 (192)
278 PRK14238 phosphate transporter 99.9 2.6E-27 5.7E-32 178.6 9.8 130 2-136 50-207 (271)
279 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-27 2.3E-32 173.4 7.4 115 2-135 26-143 (200)
280 PRK14266 phosphate ABC transpo 99.9 2.6E-27 5.7E-32 176.4 9.6 129 2-135 29-185 (250)
281 CHL00131 ycf16 sulfate ABC tra 99.9 1.5E-27 3.3E-32 177.8 8.2 127 2-135 33-190 (252)
282 PRK14261 phosphate ABC transpo 99.9 2.3E-27 5.1E-32 177.0 9.2 127 2-135 32-188 (253)
283 PRK13549 xylose transporter AT 99.9 2.6E-27 5.6E-32 192.1 9.9 127 2-135 288-444 (506)
284 TIGR03269 met_CoM_red_A2 methy 99.9 2E-27 4.4E-32 193.2 8.9 131 2-135 26-207 (520)
285 TIGR00957 MRP_assoc_pro multi 99.9 2.4E-27 5.2E-32 211.0 10.0 128 2-136 1312-1461(1522)
286 PRK14236 phosphate transporter 99.9 4.3E-27 9.4E-32 177.5 9.4 128 2-135 51-207 (272)
287 PRK14258 phosphate ABC transpo 99.9 4.4E-27 9.5E-32 176.5 9.3 128 2-135 33-189 (261)
288 PRK14246 phosphate ABC transpo 99.9 5.1E-27 1.1E-31 175.9 9.5 130 2-134 36-191 (257)
289 PRK14264 phosphate ABC transpo 99.9 3.9E-27 8.5E-32 180.4 9.1 129 2-135 71-239 (305)
290 PTZ00243 ABC transporter; Prov 99.9 3.3E-27 7.1E-32 210.2 9.9 127 2-135 1336-1485(1560)
291 PRK15134 microcin C ABC transp 99.9 3.7E-27 8E-32 192.0 9.4 127 2-136 312-465 (529)
292 cd03222 ABC_RNaseL_inhibitor T 99.9 1.8E-27 3.9E-32 169.4 6.6 86 2-135 25-110 (177)
293 cd03250 ABCC_MRP_domain1 Domai 99.9 2.9E-27 6.3E-32 171.4 7.6 114 2-135 31-166 (204)
294 COG4987 CydC ABC-type transpor 99.9 4.8E-27 1E-31 186.8 9.4 128 2-136 364-514 (573)
295 PRK10982 galactose/methyl gala 99.9 6.3E-27 1.4E-31 189.2 10.2 127 2-135 274-430 (491)
296 PRK14255 phosphate ABC transpo 99.9 6.3E-27 1.4E-31 174.6 9.4 128 2-135 31-187 (252)
297 COG3845 ABC-type uncharacteriz 99.9 5.4E-27 1.2E-31 185.0 9.3 128 2-136 30-180 (501)
298 PRK14257 phosphate ABC transpo 99.9 6.3E-27 1.4E-31 180.9 9.3 129 2-135 108-264 (329)
299 COG1119 ModF ABC-type molybden 99.9 8.1E-27 1.8E-31 170.7 9.1 126 2-134 57-209 (257)
300 COG0444 DppD ABC-type dipeptid 99.9 6.9E-27 1.5E-31 176.9 8.7 128 2-136 31-193 (316)
301 COG4608 AppF ABC-type oligopep 99.9 8.8E-27 1.9E-31 173.0 8.9 103 2-134 39-147 (268)
302 PRK10938 putative molybdenum t 99.9 6.4E-27 1.4E-31 189.1 8.8 129 2-136 286-441 (490)
303 cd03223 ABCD_peroxisomal_ALDP 99.9 3.1E-27 6.6E-32 166.6 6.0 105 2-136 27-131 (166)
304 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.5E-27 1.6E-31 174.9 8.3 126 2-134 26-177 (255)
305 COG4172 ABC-type uncharacteriz 99.9 5.2E-27 1.1E-31 181.9 7.6 130 2-136 313-466 (534)
306 PTZ00265 multidrug resistance 99.9 7.1E-27 1.5E-31 207.0 9.5 128 2-136 411-619 (1466)
307 PRK14252 phosphate ABC transpo 99.9 9.8E-27 2.1E-31 174.9 8.7 130 2-135 42-200 (265)
308 COG1129 MglA ABC-type sugar tr 99.9 1.2E-26 2.6E-31 185.2 9.1 127 2-135 34-184 (500)
309 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.1E-26 2.4E-31 160.4 6.4 85 2-136 26-110 (144)
310 TIGR01257 rim_protein retinal- 99.9 2E-26 4.4E-31 206.9 9.8 126 2-135 956-1100(2272)
311 COG4167 SapF ABC-type antimicr 99.9 6.5E-26 1.4E-30 160.3 10.0 122 3-131 40-184 (267)
312 PRK15064 ABC transporter ATP-b 99.9 1.5E-26 3.3E-31 188.5 7.5 116 2-135 27-194 (530)
313 TIGR01257 rim_protein retinal- 99.9 3.5E-26 7.6E-31 205.3 9.9 126 2-135 1965-2109(2272)
314 PRK10535 macrolide transporter 99.9 4.8E-26 1E-30 189.3 9.8 127 2-135 34-183 (648)
315 TIGR01271 CFTR_protein cystic 99.9 3.4E-26 7.3E-31 203.3 9.4 127 2-136 1245-1393(1490)
316 COG1123 ATPase components of v 99.9 2.7E-26 5.9E-31 184.3 7.9 131 2-136 35-194 (539)
317 PLN03211 ABC transporter G-25; 99.9 3.6E-26 7.9E-31 190.1 8.9 123 2-135 94-245 (659)
318 PRK15064 ABC transporter ATP-b 99.9 4.7E-26 1E-30 185.6 8.4 116 2-135 345-477 (530)
319 PRK11819 putative ABC transpor 99.9 3.8E-26 8.3E-31 187.1 7.7 116 2-135 33-202 (556)
320 COG1101 PhnK ABC-type uncharac 99.9 9.7E-26 2.1E-30 162.5 8.5 129 2-137 32-189 (263)
321 cd03291 ABCC_CFTR1 The CFTR su 99.9 9.6E-26 2.1E-30 171.1 8.5 114 2-135 63-198 (282)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.5E-26 1.2E-30 186.0 7.6 116 2-135 31-200 (552)
323 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1E-25 2.2E-30 157.2 7.5 95 2-135 25-119 (157)
324 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5.1E-26 1.1E-30 167.3 6.2 121 2-134 48-180 (224)
325 COG4152 ABC-type uncharacteriz 99.9 1.9E-25 4.1E-30 163.6 8.6 121 2-133 28-167 (300)
326 COG4136 ABC-type uncharacteriz 99.9 3.6E-25 7.7E-30 152.2 9.0 123 2-133 28-171 (213)
327 PRK13409 putative ATPase RIL; 99.9 1.9E-25 4.1E-30 183.8 8.5 114 2-135 365-492 (590)
328 TIGR00955 3a01204 The Eye Pigm 99.9 3.5E-25 7.5E-30 183.4 9.9 125 2-136 51-206 (617)
329 TIGR00954 3a01203 Peroxysomal 99.9 1.5E-25 3.2E-30 186.7 7.1 116 2-135 478-621 (659)
330 PRK13409 putative ATPase RIL; 99.9 1.6E-25 3.4E-30 184.4 7.0 127 2-135 99-251 (590)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.4E-25 5.3E-30 182.2 7.7 116 2-135 348-482 (552)
332 PRK13546 teichoic acids export 99.9 6.3E-25 1.4E-29 165.2 9.1 125 2-134 50-181 (264)
333 COG4778 PhnL ABC-type phosphon 99.9 4.1E-25 8.9E-30 154.5 7.4 128 2-132 37-188 (235)
334 PRK11819 putative ABC transpor 99.9 3.1E-25 6.7E-30 181.8 7.7 116 2-135 350-484 (556)
335 COG4674 Uncharacterized ABC-ty 99.9 1.9E-25 4.1E-30 159.0 5.1 122 2-129 31-180 (249)
336 PRK10636 putative ABC transpor 99.9 7.9E-26 1.7E-30 187.7 3.7 130 2-134 27-187 (638)
337 KOG0056 Heavy metal exporter H 99.9 1.1E-24 2.4E-29 172.5 8.9 124 2-132 564-710 (790)
338 COG0396 sufC Cysteine desulfur 99.9 3.3E-24 7.2E-29 155.7 10.3 125 2-133 30-181 (251)
339 PRK10636 putative ABC transpor 99.9 6E-25 1.3E-29 182.5 7.0 116 2-135 338-469 (638)
340 TIGR00956 3a01205 Pleiotropic 99.9 1.1E-24 2.4E-29 192.7 9.0 124 2-136 789-942 (1394)
341 COG4133 CcmA ABC-type transpor 99.9 2.6E-24 5.6E-29 152.1 8.7 124 2-133 28-167 (209)
342 PLN03073 ABC transporter F fam 99.9 1.2E-24 2.7E-29 182.2 7.7 116 2-135 535-666 (718)
343 PRK15177 Vi polysaccharide exp 99.9 2.7E-24 5.9E-29 157.1 8.6 113 2-134 13-142 (213)
344 PRK11147 ABC transporter ATPas 99.9 2.1E-24 4.5E-29 179.2 7.7 127 2-134 29-194 (635)
345 PRK11147 ABC transporter ATPas 99.9 2E-24 4.3E-29 179.4 7.6 116 2-135 345-479 (635)
346 TIGR00956 3a01205 Pleiotropic 99.9 2.1E-24 4.6E-29 190.9 7.8 127 2-136 87-249 (1394)
347 PLN03140 ABC transporter G fam 99.9 5E-24 1.1E-28 188.8 9.7 125 2-136 906-1059(1470)
348 PRK13545 tagH teichoic acids e 99.9 9E-24 1.9E-28 170.4 9.0 121 2-135 50-182 (549)
349 COG4586 ABC-type uncharacteriz 99.9 1.3E-23 2.9E-28 156.0 8.8 126 2-135 50-195 (325)
350 COG5265 ATM1 ABC-type transpor 99.9 1.6E-23 3.5E-28 163.0 9.2 125 2-134 289-437 (497)
351 PLN03130 ABC transporter C fam 99.9 7.4E-24 1.6E-28 189.3 8.0 115 2-136 643-780 (1622)
352 cd03238 ABC_UvrA The excision 99.9 9.8E-24 2.1E-28 150.1 6.7 100 2-135 21-128 (176)
353 PLN03232 ABC transporter C fam 99.9 9.4E-24 2E-28 188.0 6.5 116 2-136 643-780 (1495)
354 TIGR00957 MRP_assoc_pro multi 99.9 2.3E-23 5E-28 185.7 8.9 116 2-137 664-801 (1522)
355 TIGR01271 CFTR_protein cystic 99.9 2.7E-23 5.9E-28 184.9 9.1 116 2-137 452-589 (1490)
356 PLN03140 ABC transporter G fam 99.9 1.1E-23 2.5E-28 186.5 5.6 125 2-136 191-376 (1470)
357 cd03278 ABC_SMC_barmotin Barmo 99.9 4.3E-24 9.4E-29 154.4 2.4 118 4-135 24-156 (197)
358 KOG0061 Transporter, ABC super 99.9 3.9E-23 8.5E-28 170.7 8.4 122 2-133 56-207 (613)
359 PTZ00243 ABC transporter; Prov 99.9 8.3E-23 1.8E-27 182.3 9.2 115 2-136 686-822 (1560)
360 COG0488 Uup ATPase components 99.9 6.2E-23 1.3E-27 166.5 7.7 114 2-133 29-190 (530)
361 KOG0054 Multidrug resistance-a 99.9 1.7E-22 3.7E-27 175.9 9.7 125 2-133 1166-1312(1381)
362 COG4172 ABC-type uncharacteriz 99.9 1.3E-22 2.8E-27 157.6 7.7 128 2-136 36-197 (534)
363 PLN03073 ABC transporter F fam 99.9 3.2E-22 6.9E-27 167.7 8.7 131 2-135 203-383 (718)
364 COG4107 PhnK ABC-type phosphon 99.9 5E-22 1.1E-26 139.8 8.1 132 2-136 32-191 (258)
365 COG4138 BtuD ABC-type cobalami 99.9 5.2E-22 1.1E-26 139.6 4.6 123 2-132 25-168 (248)
366 COG1134 TagH ABC-type polysacc 99.8 1.5E-20 3.3E-25 137.8 9.1 121 2-134 53-185 (249)
367 cd03272 ABC_SMC3_euk Eukaryoti 99.8 2.9E-21 6.3E-26 143.2 4.4 125 3-135 24-201 (243)
368 COG4615 PvdE ABC-type sideroph 99.8 2.5E-20 5.5E-25 144.6 9.5 124 2-132 349-484 (546)
369 COG0488 Uup ATPase components 99.8 2.1E-20 4.5E-25 151.8 8.2 114 2-133 348-476 (530)
370 KOG0059 Lipid exporter ABCA1 a 99.8 3E-20 6.6E-25 159.0 8.8 125 3-133 592-735 (885)
371 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.1E-20 2.4E-25 141.0 4.2 127 4-136 27-210 (251)
372 COG4178 ABC-type uncharacteriz 99.8 7.3E-20 1.6E-24 149.1 7.7 115 2-135 419-554 (604)
373 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.2E-19 2.5E-24 132.6 4.9 123 3-134 29-171 (213)
374 KOG0054 Multidrug resistance-a 99.8 2.9E-19 6.3E-24 155.9 8.1 116 2-137 547-684 (1381)
375 cd03270 ABC_UvrA_I The excisio 99.8 7.2E-20 1.6E-24 134.9 3.6 53 80-135 118-178 (226)
376 cd03240 ABC_Rad50 The catalyti 99.8 3.7E-19 7.9E-24 129.3 3.0 116 4-133 24-158 (204)
377 cd03275 ABC_SMC1_euk Eukaryoti 99.7 1.9E-18 4.2E-23 128.8 4.2 129 4-135 24-198 (247)
378 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.9E-18 4.2E-23 125.0 3.8 121 5-135 24-152 (198)
379 KOG0927 Predicted transporter 99.7 4.8E-18 1E-22 135.8 5.3 118 4-133 418-546 (614)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.5E-18 3.2E-23 126.9 1.7 111 4-135 27-170 (212)
381 KOG0064 Peroxisomal long-chain 99.7 6.7E-17 1.5E-21 129.3 6.4 113 3-136 509-652 (728)
382 KOG0065 Pleiotropic drug resis 99.7 2.2E-17 4.7E-22 142.6 2.9 119 4-132 819-966 (1391)
383 KOG0066 eIF2-interacting prote 99.7 6.9E-17 1.5E-21 127.4 4.9 110 3-131 614-739 (807)
384 COG1245 Predicted ATPase, RNas 99.7 3.7E-16 8E-21 123.3 7.9 108 2-130 367-489 (591)
385 KOG0060 Long-chain acyl-CoA tr 99.6 4E-16 8.7E-21 125.7 7.9 115 4-133 463-607 (659)
386 cd03271 ABC_UvrA_II The excisi 99.6 5E-16 1.1E-20 116.7 6.9 55 78-135 148-211 (261)
387 KOG0927 Predicted transporter 99.6 4E-15 8.6E-20 119.3 6.3 128 3-133 102-258 (614)
388 KOG0062 ATPase component of AB 99.6 9.9E-15 2.1E-19 116.5 7.5 115 3-132 107-234 (582)
389 COG1129 MglA ABC-type sugar tr 99.5 3.6E-14 7.8E-19 114.0 10.2 124 2-132 285-437 (500)
390 COG1245 Predicted ATPase, RNas 99.5 1E-14 2.2E-19 115.3 2.2 119 3-130 101-247 (591)
391 cd03239 ABC_SMC_head The struc 99.5 1.8E-14 3.8E-19 102.7 2.9 39 94-135 95-137 (178)
392 cd03280 ABC_MutS2 MutS2 homolo 99.5 6.6E-14 1.4E-18 101.3 5.2 96 4-133 30-127 (200)
393 COG4170 SapD ABC-type antimicr 99.5 4.4E-14 9.5E-19 102.5 3.5 124 2-133 33-195 (330)
394 KOG2355 Predicted ABC-type tra 99.4 1.2E-13 2.6E-18 99.8 4.7 125 5-132 43-183 (291)
395 TIGR02858 spore_III_AA stage I 99.4 8.1E-13 1.8E-17 99.8 9.0 57 3-63 112-169 (270)
396 KOG0062 ATPase component of AB 99.4 3.5E-13 7.5E-18 107.7 5.8 112 4-133 392-519 (582)
397 cd03227 ABC_Class2 ABC-type Cl 99.4 1.4E-13 3E-18 96.6 2.5 92 4-134 23-119 (162)
398 PTZ00132 GTP-binding nuclear p 99.4 2.4E-12 5.1E-17 93.8 8.0 38 96-136 155-197 (215)
399 COG3845 ABC-type uncharacteriz 99.4 4.1E-12 8.9E-17 101.2 9.3 127 2-134 284-441 (501)
400 PRK00635 excinuclease ABC subu 99.4 2E-12 4.4E-17 116.1 8.0 53 81-136 791-852 (1809)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.3 2.5E-13 5.3E-18 99.4 1.3 40 93-135 126-169 (213)
402 PRK00349 uvrA excinuclease ABC 99.3 2.8E-12 6.1E-17 110.4 7.8 39 94-135 831-872 (943)
403 COG2401 ABC-type ATPase fused 99.3 1.3E-12 2.8E-17 102.7 4.7 116 1-134 408-545 (593)
404 cd03241 ABC_RecN RecN ATPase i 99.3 1.8E-12 3.8E-17 98.2 4.6 39 94-135 171-213 (276)
405 KOG0065 Pleiotropic drug resis 99.3 1.6E-12 3.4E-17 113.1 3.7 124 2-135 141-299 (1391)
406 cd00820 PEPCK_HprK Phosphoenol 99.3 3.6E-12 7.8E-17 83.5 3.3 51 2-62 15-65 (107)
407 cd03283 ABC_MutS-like MutS-lik 99.2 3.6E-12 7.8E-17 92.4 3.0 24 3-26 26-49 (199)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.2 7.5E-12 1.6E-16 92.1 4.3 93 3-133 31-131 (222)
409 cd03242 ABC_RecF RecF is a rec 99.2 2.1E-11 4.6E-16 92.1 6.2 39 94-135 184-231 (270)
410 cd03243 ABC_MutS_homologs The 99.2 1.7E-12 3.7E-17 94.0 0.2 97 3-133 30-127 (202)
411 KOG0063 RNAse L inhibitor, ABC 99.2 3.4E-11 7.4E-16 95.0 7.1 108 3-131 368-491 (592)
412 TIGR00630 uvra excinuclease AB 99.2 6.3E-11 1.4E-15 102.0 8.5 39 94-135 829-870 (924)
413 TIGR03238 dnd_assoc_3 dnd syst 99.1 6.3E-11 1.4E-15 95.0 5.3 56 2-64 32-88 (504)
414 cd03281 ABC_MSH5_euk MutS5 hom 99.1 5.3E-11 1.2E-15 87.1 3.3 92 3-129 30-123 (213)
415 PRK10078 ribose 1,5-bisphospho 99.0 2.6E-10 5.6E-15 81.6 4.3 56 1-63 1-56 (186)
416 PF02463 SMC_N: RecF/RecN/SMC 99.0 3.2E-10 7E-15 82.8 3.6 40 93-135 136-179 (220)
417 KOG0066 eIF2-interacting prote 99.0 3.8E-10 8.3E-15 89.8 4.2 53 77-132 390-448 (807)
418 cd01130 VirB11-like_ATPase Typ 98.9 1.1E-09 2.3E-14 78.5 4.4 37 2-38 25-61 (186)
419 TIGR01069 mutS2 MutS2 family p 98.8 2.6E-09 5.6E-14 90.9 3.9 96 3-132 323-420 (771)
420 smart00534 MUTSac ATPase domai 98.8 2.7E-09 5.8E-14 76.4 3.4 28 5-32 2-30 (185)
421 cd01128 rho_factor Transcripti 98.8 1E-08 2.3E-13 76.7 6.1 112 2-117 16-161 (249)
422 cd03284 ABC_MutS1 MutS1 homolo 98.8 5.3E-09 1.1E-13 76.7 3.6 23 4-26 32-54 (216)
423 PRK09270 nucleoside triphospha 98.8 4.6E-09 1E-13 77.5 3.3 32 2-33 33-64 (229)
424 TIGR00235 udk uridine kinase. 98.8 5.7E-09 1.2E-13 75.8 3.4 27 2-28 6-32 (207)
425 TIGR00101 ureG urease accessor 98.8 1.5E-08 3.3E-13 73.4 5.5 57 3-64 2-58 (199)
426 PRK09825 idnK D-gluconate kina 98.8 1.2E-08 2.7E-13 72.5 4.9 33 2-38 3-35 (176)
427 TIGR00554 panK_bact pantothena 98.8 9.1E-09 2E-13 78.5 4.3 37 2-38 62-100 (290)
428 PRK06002 fliI flagellum-specif 98.7 7.2E-09 1.6E-13 83.0 3.7 62 2-64 165-230 (450)
429 cd02026 PRK Phosphoribulokinas 98.7 1.7E-08 3.7E-13 76.5 5.1 33 5-37 2-34 (273)
430 cd03282 ABC_MSH4_euk MutS4 hom 98.7 1.4E-08 3.1E-13 73.9 4.3 24 3-26 30-53 (204)
431 PLN02796 D-glycerate 3-kinase 98.7 4.9E-08 1.1E-12 75.9 7.0 36 3-38 101-139 (347)
432 cd02023 UMPK Uridine monophosp 98.7 2.6E-08 5.6E-13 71.7 4.9 32 4-37 1-32 (198)
433 PRK00300 gmk guanylate kinase; 98.7 2.7E-08 5.8E-13 71.9 4.3 26 2-27 5-30 (205)
434 KOG0063 RNAse L inhibitor, ABC 98.7 4.6E-08 1E-12 77.6 5.6 121 3-132 101-249 (592)
435 smart00382 AAA ATPases associa 98.6 3.1E-07 6.8E-12 60.7 8.9 36 2-37 2-38 (148)
436 PLN03046 D-glycerate 3-kinase; 98.6 1.5E-07 3.3E-12 74.9 6.6 36 3-38 213-251 (460)
437 cd04155 Arl3 Arl3 subfamily. 98.6 8.6E-08 1.9E-12 66.9 4.7 36 3-38 15-58 (173)
438 cd02025 PanK Pantothenate kina 98.6 4.2E-08 9.2E-13 72.1 2.8 32 4-35 1-34 (220)
439 PF13555 AAA_29: P-loop contai 98.5 5.8E-08 1.2E-12 57.4 2.6 27 4-30 25-51 (62)
440 PRK01889 GTPase RsgA; Reviewed 98.5 8.1E-08 1.8E-12 75.4 4.1 57 3-66 196-252 (356)
441 PRK10416 signal recognition pa 98.5 6.6E-08 1.4E-12 74.8 3.5 36 3-38 115-150 (318)
442 PLN02318 phosphoribulokinase/u 98.5 8.6E-08 1.9E-12 79.1 4.3 36 2-38 65-100 (656)
443 cd04104 p47_IIGP_like p47 (47- 98.5 1.1E-07 2.4E-12 68.6 3.9 34 2-35 1-34 (197)
444 TIGR02788 VirB11 P-type DNA tr 98.5 1.4E-07 3E-12 72.7 4.5 36 2-37 144-179 (308)
445 PRK06793 fliI flagellum-specif 98.5 5.7E-07 1.2E-11 72.1 7.6 36 3-38 157-192 (432)
446 TIGR02322 phosphon_PhnN phosph 98.4 2E-07 4.3E-12 66.0 3.8 32 3-35 2-33 (179)
447 PRK07429 phosphoribulokinase; 98.4 3.1E-07 6.6E-12 71.3 5.1 33 2-34 8-40 (327)
448 PRK03846 adenylylsulfate kinas 98.4 2.6E-07 5.6E-12 66.7 4.3 36 3-38 25-61 (198)
449 TIGR01360 aden_kin_iso1 adenyl 98.4 1.1E-07 2.3E-12 67.5 2.2 32 3-34 4-38 (188)
450 PRK07721 fliI flagellum-specif 98.4 2.2E-07 4.7E-12 74.7 4.0 60 2-62 158-222 (438)
451 PRK13695 putative NTPase; Prov 98.4 6E-08 1.3E-12 68.6 0.4 95 4-118 2-103 (174)
452 cd01120 RecA-like_NTPases RecA 98.4 7.2E-07 1.6E-11 61.1 5.8 33 5-37 2-34 (165)
453 TIGR02524 dot_icm_DotB Dot/Icm 98.4 1.8E-07 3.9E-12 73.4 3.0 25 3-27 135-159 (358)
454 TIGR00017 cmk cytidylate kinas 98.4 2E-07 4.3E-12 68.5 2.9 34 1-34 1-37 (217)
455 PRK10751 molybdopterin-guanine 98.4 4.4E-07 9.6E-12 64.4 4.6 36 2-37 6-44 (173)
456 TIGR00606 rad50 rad50. This fa 98.4 3.1E-07 6.6E-12 82.5 4.6 34 4-37 30-68 (1311)
457 PRK11545 gntK gluconate kinase 98.4 1.5E-07 3.3E-12 66.0 2.1 26 8-37 1-26 (163)
458 PRK08533 flagellar accessory p 98.4 7.8E-07 1.7E-11 65.8 5.9 35 3-37 25-60 (230)
459 COG0178 UvrA Excinuclease ATPa 98.4 5.1E-07 1.1E-11 76.3 5.2 39 94-135 823-864 (935)
460 PRK07196 fliI flagellum-specif 98.4 2.7E-07 5.8E-12 73.9 3.4 30 2-31 155-184 (434)
461 PRK08149 ATP synthase SpaL; Va 98.4 2.5E-07 5.5E-12 73.9 3.0 37 2-38 151-190 (428)
462 TIGR00630 uvra excinuclease AB 98.4 3.6E-07 7.7E-12 79.2 4.0 39 94-135 488-528 (924)
463 TIGR03263 guanyl_kin guanylate 98.3 4.2E-07 9.1E-12 64.2 3.4 25 3-27 2-26 (180)
464 cd04159 Arl10_like Arl10-like 98.3 4.2E-07 9E-12 61.8 3.2 21 5-25 2-22 (159)
465 PRK05480 uridine/cytidine kina 98.3 5.1E-07 1.1E-11 65.5 3.7 25 2-26 6-30 (209)
466 cd00879 Sar1 Sar1 subfamily. 98.3 9.6E-07 2.1E-11 62.7 4.4 37 2-38 19-63 (190)
467 PRK07960 fliI flagellum-specif 98.3 3.3E-07 7.1E-12 73.6 2.2 39 2-40 175-216 (455)
468 cd01854 YjeQ_engC YjeQ/EngC. 98.3 6.1E-07 1.3E-11 68.5 3.6 33 3-35 162-194 (287)
469 PRK00098 GTPase RsgA; Reviewed 98.3 7.7E-07 1.7E-11 68.3 4.1 33 3-35 165-197 (298)
470 cd01876 YihA_EngB The YihA (En 98.3 5.1E-07 1.1E-11 61.9 2.8 28 5-32 2-31 (170)
471 PRK10463 hydrogenase nickel in 98.3 8.4E-07 1.8E-11 67.7 4.2 36 2-37 104-139 (290)
472 cd00071 GMPK Guanosine monopho 98.3 9.3E-07 2E-11 60.4 3.4 24 5-28 2-25 (137)
473 PRK04863 mukB cell division pr 98.2 1.1E-06 2.3E-11 79.4 4.6 35 4-38 29-63 (1486)
474 PRK09862 putative ATP-dependen 98.2 1.1E-06 2.4E-11 71.7 4.3 37 2-38 210-246 (506)
475 PF10662 PduV-EutP: Ethanolami 98.2 4.4E-06 9.4E-11 57.5 6.5 23 4-26 3-25 (143)
476 cd01131 PilT Pilus retraction 98.2 1.1E-06 2.4E-11 63.5 3.8 34 4-37 3-37 (198)
477 PRK00349 uvrA excinuclease ABC 98.2 7.9E-07 1.7E-11 77.3 3.5 40 94-136 490-531 (943)
478 PRK00409 recombination and DNA 98.2 1.1E-06 2.5E-11 75.2 3.7 33 94-130 391-423 (782)
479 smart00053 DYNc Dynamin, GTPas 98.2 1.3E-06 2.8E-11 65.1 3.5 32 4-35 28-61 (240)
480 cd01136 ATPase_flagellum-secre 98.2 1.7E-06 3.7E-11 67.1 4.2 36 2-37 69-104 (326)
481 TIGR03498 FliI_clade3 flagella 98.2 2E-06 4.3E-11 68.8 4.3 36 3-38 141-176 (418)
482 PRK13851 type IV secretion sys 98.2 2.3E-06 5E-11 66.9 4.6 35 3-37 163-197 (344)
483 PF03193 DUF258: Protein of un 98.2 1.9E-06 4E-11 60.5 3.5 32 3-34 36-67 (161)
484 cd04129 Rho2 Rho2 subfamily. 98.2 2E-06 4.4E-11 61.2 3.6 25 2-26 1-26 (187)
485 PRK06995 flhF flagellar biosyn 98.1 1.1E-06 2.3E-11 71.5 2.1 30 3-32 257-286 (484)
486 TIGR01313 therm_gnt_kin carboh 98.1 1.8E-06 3.9E-11 60.2 3.0 29 5-37 1-29 (163)
487 TIGR00368 Mg chelatase-related 98.1 2.4E-06 5.1E-11 69.9 4.1 37 2-38 211-247 (499)
488 PF13207 AAA_17: AAA domain; P 98.1 1.8E-06 3.9E-11 57.0 2.7 23 4-26 1-23 (121)
489 PRK07594 type III secretion sy 98.1 2.6E-06 5.7E-11 68.3 3.7 37 2-38 155-191 (433)
490 TIGR02546 III_secr_ATP type II 98.1 3.6E-06 7.8E-11 67.5 4.2 35 3-37 146-180 (422)
491 TIGR03819 heli_sec_ATPase heli 98.1 4.5E-06 9.8E-11 65.2 4.5 36 3-38 179-214 (340)
492 PRK05922 type III secretion sy 98.1 4.3E-06 9.3E-11 67.1 4.5 36 2-37 157-192 (434)
493 PRK09099 type III secretion sy 98.1 4.1E-06 8.9E-11 67.4 4.3 37 2-38 163-199 (441)
494 TIGR01026 fliI_yscN ATPase Fli 98.1 4.2E-06 9.1E-11 67.4 4.3 36 2-37 163-198 (440)
495 cd01888 eIF2_gamma eIF2-gamma 98.1 4.6E-06 1E-10 60.4 4.1 31 4-34 2-33 (203)
496 PRK05541 adenylylsulfate kinas 98.1 3.2E-06 6.9E-11 59.7 3.2 36 2-37 7-43 (176)
497 PF01926 MMR_HSR1: 50S ribosom 98.1 3E-06 6.4E-11 55.7 2.8 21 5-25 2-22 (116)
498 PRK07261 topology modulation p 98.1 2.8E-06 6E-11 60.1 2.7 23 4-26 2-24 (171)
499 cd03287 ABC_MSH3_euk MutS3 hom 98.1 2.7E-06 5.8E-11 62.7 2.6 33 3-35 32-65 (222)
500 TIGR02030 BchI-ChlI magnesium 98.0 3.1E-06 6.8E-11 66.0 3.0 32 3-34 26-57 (337)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-41 Score=240.34 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=107.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||||||+++..|++|+|.++|..+.. ......+|+++|+|||+++|||+.+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~---~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGD---KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccc---hhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 46789999999999999999999999999999999964321 12667899999999999999987642
Q ss_pred -----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 -----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 -----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
..+..+.+.++|++++++ +.|+ +||||||||+||||||.+|+++|+| ||||-||++-+.
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD---EPTSALDPElv~ 173 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD---EPTSALDPELVG 173 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec---CCcccCCHHHHH
Confidence 234567788889998874 5666 7999999999999999999999999 999999998665
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.6e-39 Score=238.38 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=111.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--------------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--------------N 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--------------~ 67 (143)
+..++|+||||||||||||+|+|+++|.+|+|+++|+ ++..++.++++++++||||.+... +
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~----~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK----DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCC----chhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 4678999999999999999999999999999999997 678889999999999999996421 1
Q ss_pred ----cccCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 68 ----FSTLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 68 ----~~~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
+...+++|.+.+.++|+.+++ +.+.+ +||||||||.|||||||+|++|||| |||+-||...|-+.++
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD---EPTs~LDi~~Q~evl~ 179 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD---EPTSHLDIAHQIEVLE 179 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC---CCccccCHHHHHHHHH
Confidence 223456777889999999876 45555 7999999999999999999999999 9999999998876653
No 3
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=228.60 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=113.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-------------- 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-------------- 67 (143)
++.++||||||||||||||+|+|+.+|++|+|.++|..+. .+.....+++|+++||+||.++|++
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~-~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQIT-KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchh-ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 5789999999999999999999999999999999996332 2344456778899999999999762
Q ss_pred --------cccCChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 68 --------FSTLDIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 68 --------~~~~~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
|..+++++...+.++|+++|+. .+. -+||||||||+|||||+++|+++|-| ||++.||....++
T Consensus 109 ~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILAD---EPvasLDp~~a~~ 185 (258)
T COG3638 109 YTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD---EPVASLDPESAKK 185 (258)
T ss_pred cchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecC---CcccccChhhHHH
Confidence 2235678888999999999874 222 27999999999999999999999999 9999999999998
Q ss_pred ccCC
Q 032336 135 YIKD 138 (143)
Q Consensus 135 ~~~~ 138 (143)
.|+.
T Consensus 186 Vm~~ 189 (258)
T COG3638 186 VMDI 189 (258)
T ss_pred HHHH
Confidence 7763
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-37 Score=225.23 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=110.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++++|||||||||+||+|++++.|++|+|+++|. ++...+..++|++||||.|...|||+.++
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~----~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE----DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe----ecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 4678999999999999999999999999999999997 66778888999999999999999987642
Q ss_pred ---Ch-hhHHHHHHHHHHhhh-----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDK-----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~-----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+ +-.++++++|+.+++ .++|+ +||||||||.+|||||.+|+++||| |||+-+|.-+.++.
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD---EPFgALDpI~R~~l 174 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD---EPFGALDPITRKQL 174 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec---CCccccChhhHHHH
Confidence 22 335678899999876 35666 7999999999999999999999999 99999998776654
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-37 Score=225.09 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=103.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||||+|+|+.+|++|+|.++|.. +. .....++||||++.|+|+.++
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~----v~-----~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~ 99 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP----VT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLEL 99 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc----cC-----CCCCCEEEEeccCcccchhhHHhhheehhhc
Confidence 57899999999999999999999999999999999962 21 123569999999999876542
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+..+++.++|+.+++. +.|+ +|||+||||+|||||+.+|++|||| |||+-||..+.+++
T Consensus 100 ~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD---EPFgALDalTR~~l 169 (248)
T COG1116 100 RGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD---EPFGALDALTREEL 169 (248)
T ss_pred cccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc---CCcchhhHHHHHHH
Confidence 123456789999999874 6666 7999999999999999999999999 99999999887754
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=226.65 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=112.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+...||||.||||||||+||++++.+|++|+|.++|.++. .+.....+..|++||++||+++|+...+
T Consensus 32 GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~-~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 32 GEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT-ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc-cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 4578999999999999999999999999999999997554 4667777889999999999999874221
Q ss_pred --C-ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --L-DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~-~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. ..+-.+++.++|+.+++. +.|+ +||||||||+||||||.+|++||.| ||||-||+++..++.
T Consensus 111 ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~D---EaTSALDP~TT~sIL 181 (339)
T COG1135 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCD---EATSALDPETTQSIL 181 (339)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEec---CccccCChHHHHHHH
Confidence 1 234457889999999874 6666 7999999999999999999999999 999999999988764
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-36 Score=219.43 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=104.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|+|||||||||||++|.|+.+|++|.|+++|.++. .+........ +++||||||+++|++..+.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~-~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT-KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC-cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 5689999999999999999999999999999999997443 2333233333 4679999999998754431
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh---C-CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 ----DI-QDKESVAKLVKLIDKS---N-GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~---~-~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. ...+.++++++.+++. . .++ +||||||||+|||||+.+|+++|.| |||..||..+.+..+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilAD---EPTgnLD~~t~~~V~ 182 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILAD---EPTGNLDSKTAKEVL 182 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEee---CccccCChHHHHHHH
Confidence 11 2355677788887764 2 444 7999999999999999999999999 999999998887654
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=224.17 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=101.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--------------- 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--------------- 66 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|. +.... .-+.+||||||...+-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~----~~~~~---~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~ 102 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK----PVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGR 102 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccc----ccccc---ccCCeEEEcCcccccCCCCCcCHHHHHHccC
Confidence 4578999999999999999999999999999999985 22111 1135799999975421
Q ss_pred -----ccccCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 67 -----NFSTLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 67 -----~~~~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
++....+++.+.++++|+++++. ++.+ +||||+|||.|||||+++|++|+|| ||++..|...+..+.
T Consensus 103 ~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD---EP~~gvD~~~~~~i~ 179 (254)
T COG1121 103 YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD---EPFTGVDVAGQKEIY 179 (254)
T ss_pred cccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec---CCcccCCHHHHHHHH
Confidence 12234556788999999999874 4444 7999999999999999999999999 999999998887553
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=230.09 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=103.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||||+|+|+.+|++|+|+++|. ++...++ ..|.|++|||++.|||++++
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~----~vt~l~P--~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGR----DVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----ECCCCCh--hHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4678999999999999999999999999999999997 3444444 34779999999999987642
Q ss_pred ----ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ----DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
..+...+++++.+.+++ .++++ +||||||||++|||++.+|+++|+| ||+++||.....
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D---EPlSnLDa~lR~ 170 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD---EPLSNLDAKLRV 170 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec---CchhHhhHHHHH
Confidence 12345678888888875 46655 7999999999999999999999999 999999987665
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=231.13 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=104.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||||+|+|+..|++|+|.++|+++ ...++ -+|.|++|||++.|||++++.
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i----~~lpp--~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI----TDVPP--EKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CCCCh--hhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 467899999999999999999999999999999999843 43333 346799999999999876531
Q ss_pred ------hhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 ------IQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ------~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+..+++.++++.+++ +.+++ +||||||||++||||+.+|++|||| ||++.||....+.+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD---EPlSaLD~kLR~~m 175 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD---EPLSALDAKLREQM 175 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc---CcccchhHHHHHHH
Confidence 1234688889998876 35555 7999999999999999999999999 99999998877643
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.6e-35 Score=206.44 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=109.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.+.|+||||||||||+|+|.+..+|++|+|+++|.++. .+......-+|++||+|||++.|.+..++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~-~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS-RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc-cccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 4678899999999999999999999999999999997554 45555667789999999999987643221
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+-.+++.++|+++++. +..+ +||||||||+||||++.+|++|+-| ||+-++|......+|
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD---EPTGNLDp~~s~~im 177 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD---EPTGNLDPDLSWEIM 177 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec---CCCCCCChHHHHHHH
Confidence 123456788899999874 2333 7999999999999999999999999 999999999887665
No 12
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=207.05 Aligned_cols=128 Identities=14% Similarity=0.060 Sum_probs=102.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCC-----ceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG-----SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~-----G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------- 70 (143)
..+|||||||||||||||+++++..... |+|.++|+++.. ...+.-++|+++|+|||.|+.|+..-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~--~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG 111 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD--PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG 111 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC--CCCCHHHHHHHheeeccCCCCCCchHHHHHHHh
Confidence 4689999999999999999999987764 999999986543 24567889999999999999886321
Q ss_pred ------CChhhHHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDIQDKESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~~~~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..++-.+.++..|+...+. ....+|||||||++||||+|.+|++|||| ||+|-||+....|+
T Consensus 112 ~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmD---EPtSALDPIsT~kI 188 (253)
T COG1117 112 LRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD---EPTSALDPISTLKI 188 (253)
T ss_pred HHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEec---CcccccCchhHHHH
Confidence 1123345677777766542 33347999999999999999999999999 99999998776654
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=217.59 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=103.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++-+||+||||||||||||+|+|+..|++|.|.++|+.+. +... .....++||||||++.+|+++++
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~-D~~~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~ 104 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF-DVSN--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKV 104 (345)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEecc-chhc--cchhhcceeEEEechhhcccchHHhhhhhcccc
Confidence 4578999999999999999999999999999999996332 2222 23445779999999999876542
Q ss_pred ------ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ------DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ------~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
..+...++.++|+.+.+ +++|+ +||||+|||++|||||.+|++|||| ||+..+|.....
T Consensus 105 ~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD---EPf~ALDa~vr~ 174 (345)
T COG1118 105 RKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPFGALDAKVRK 174 (345)
T ss_pred cccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec---CCchhhhHHHHH
Confidence 12445678888888754 57887 6999999999999999999999999 999999887655
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-33 Score=203.54 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=101.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--cccccC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFSTL-------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~~-------- 71 (143)
++.++|+|+||||||||.++|+|+.+|++|+|.++|.... .....+..++.+.+|||+|.- .|..++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~---~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA---PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC---ccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 4678999999999999999999999999999999995221 122223567789999999862 222211
Q ss_pred ----ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+...++.++++.+++. .+++ +||||+|||+|||||+.+|++|++| ||++.||..+|..+
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlD---EptSaLD~siQa~I 180 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILD---EPTSALDVSVQAQI 180 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEec---CchhhhcHHHHHHH
Confidence 112234488899999873 4555 7999999999999999999999999 99999999998754
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.1e-33 Score=215.65 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=103.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+. .+.....+..++.|+|+||++.+++..+
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~-~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT-TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999997432 1122223345778999999988764221
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+++.++++.+++. +.++ +||||+|||+|||||+.+|++||+| ||++.+|...++.+.
T Consensus 110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD---EPts~LD~~t~~~i~ 180 (343)
T TIGR02314 110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---EATSALDPATTQSIL 180 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence 11 12345677888888763 4554 7999999999999999999999999 999999999887554
No 16
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.98 E-value=6.3e-33 Score=193.68 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=105.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|||||||||||||-+++|+-.|++|+|++.|+.+. .+.......+| +++|+|||.+.|.+.++.
T Consensus 36 Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~-~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 36 GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLH-KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchh-hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 5789999999999999999999999999999999997432 22222333444 679999999988754421
Q ss_pred -----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 -----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 -----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+....+.+.|+++++. ..|+ +||||||||+||||++..|++||-| ||+-++|.++-+++.
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD---EPTGNLD~~Tg~~ia 186 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD---EPTGNLDRATGDKIA 186 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc---CCCCCcchhHHHHHH
Confidence 123456688899999874 4555 7999999999999999999999999 999999999887764
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.2e-33 Score=204.58 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=104.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-cccHHHHHhhcchhcccccc--c--------c----
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-NSACRKLTKELCDVIEDYSL--V--------N---- 67 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~~ig~V~Q~~~l--~--------~---- 67 (143)
..++|+||||||||||+++++|+++|++|+|.++|. ++. ..+...+++++|||||+|.. | .
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~----~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL----DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCe----eccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 468999999999999999999999999999999996 333 35567899999999999863 2 0
Q ss_pred cccCCh-hhHHHHHHHHHHhhhh---CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 68 FSTLDI-QDKESVAKLVKLIDKS---NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 68 ~~~~~~-~~~~~~~~~l~~l~~~---~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+..... +..+++.++++.+++. ++ +.+||||+|||+||.+||.+|+++++| |||+.||....+..+
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD---EPta~LD~~~~~~l~ 178 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD---EPTAGLDPKGRRELL 178 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 112222 4567889999998873 33 347999999999999999999999999 999999998877543
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-32 Score=214.89 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=101.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+.+|++|+|.++|.. +...+. .++.++||||++.+|++.++
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~----i~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV----VNELEP--ADRDIAMVFQNYALYPHMSVRENMAYGLKI 103 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE----CCCCCH--HHCCEEEEeCCccccCCCCHHHHHHhHHhh
Confidence 45789999999999999999999999999999999973 333332 23679999999988864321
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..+.+.++++.+++. ++++ +||||||||+|||||+.+|++||+| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD---EP~s~LD~~~r~~l 173 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD---EPLSNLDAKLRVQM 173 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 11 2235677888888763 4544 7999999999999999999999999 99999999888754
No 19
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.98 E-value=1.7e-32 Score=213.91 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=103.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH----HhhcchhcccccccccccC------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL----TKELCDVIEDYSLVNFSTL------ 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~----~~~ig~V~Q~~~l~~~~~~------ 71 (143)
++.++|+|||||||||||++|+|+++|++|+|+++|. ++...+...+ ++.++||||++.+|+..++
T Consensus 19 Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~----~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~ 94 (363)
T TIGR01186 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE----NIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSL 94 (363)
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCE----ECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999997 3444444444 5689999999998864331
Q ss_pred -------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 -------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 -------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. +..+.+.++++.+++. +.++ +||||||||+|||||+.+|+++||| ||++.+|..+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD---EP~saLD~~~r~~l~ 169 (363)
T TIGR01186 95 GPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD---EAFSALDPLIRDSMQ 169 (363)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 11 2245677888888763 4444 7999999999999999999999999 999999998887554
No 20
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=2.4e-32 Score=192.29 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=103.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.+||+|||||||||||++|+|+..|.+|+|+++|.+.. ...+ ..+-++++||+.+||.+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t----~~~P--~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT----ASPP--AERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC----cCCc--ccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 4679999999999999999999999999999999997432 2222 2345899999999995432
Q ss_pred ---CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 ---LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ---~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.+.++.++++.++.++|+. ++.+ +||||||||++||+|+++-.+|||| |||+-||..-...
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD---EPFsALdP~LR~e 167 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD---EPFSALDPALRAE 167 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec---CchhhcCHHHHHH
Confidence 3457788999999999875 3333 7999999999999999999999999 9999999876554
No 21
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.4e-33 Score=197.90 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=100.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|+|||||||||.|.++.|+.+|++|.|.+++. ++...+...+ |..|||+||++.+|...++
T Consensus 30 GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~----diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 30 GEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDE----DITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred CcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCc----ccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 5789999999999999999999999999999999997 5566665444 4469999999998832211
Q ss_pred ----C-h--hhHHHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ----D-I--QDKESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ----~-~--~~~~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. + +....++++|+.+.+. ..+.+|||||+|++||||||.+|+++||| |||+..|+-.+.
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD---EPFAGVDPiaV~ 176 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD---EPFAGVDPIAVI 176 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec---CCccCCCchhHH
Confidence 1 1 2233466788887653 45558999999999999999999999999 999999986654
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=3.9e-32 Score=198.00 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=102.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||||+|.|+++|++|+|+++|.++. .++.....++++++|++||...||...++
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~-~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIP-QLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred CcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchh-ccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 4678999999999999999999999999999999997542 34444455788999999999888743221
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 72 ----DI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.+ .-++.+..-|+.+|+. +.++ +|||.++||++|||+|.+|+++++| |||+.||+.....
T Consensus 113 ~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D---EPtsGLDPI~a~~ 183 (263)
T COG1127 113 HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD---EPTSGLDPISAGV 183 (263)
T ss_pred hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec---CCCCCCCcchHHH
Confidence 11 2234455556777762 4444 7999999999999999999999999 9999999866543
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=6.2e-32 Score=197.37 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=99.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT-RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh-hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 4578999999999999999999999999999999996331 11111123456789999999876532211
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 177 (216)
T TIGR00960 108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD---EPTGNLDPELSRDI 177 (216)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence 1 12235677788888763 3333 7999999999999999999999999 99999999887744
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=6.2e-32 Score=210.45 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=101.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+.+|++|+|.++|+.+ ..... .++.++||||++.+|++.++
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~----~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI----TRLPP--QKRDYGIVFQSYALFPNLTVADNIAYGLKN 103 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence 467899999999999999999999999999999999733 22222 35679999999998864331
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+....++++++.+++. ++++ +||||||||+|||||+.+|+++||| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD---EP~s~LD~~~r~~l 173 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD---EPLSALDARVREHL 173 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 1 12245678888888763 4454 7999999999999999999999999 99999999887744
No 25
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.4e-32 Score=203.01 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=103.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC--------hh
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------IQ 74 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------~~ 74 (143)
-.+||.|+||||||||+|+|+|+.+|+.|.|.++|..+...-.......-+++||||||+..||++.++. ..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 3589999999999999999999999999999999976543333344445567899999999999876532 12
Q ss_pred hHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 75 DKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 75 ~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
+....+++...+++ .++++ +||||||||+|+|||...|++|||| ||++.||..--.
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD---EPLaSLD~~RK~ 165 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD---EPLASLDLPRKR 165 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec---Cchhhcccchhh
Confidence 34566777777775 46776 6999999999999999999999999 999999865433
No 26
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=192.48 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=105.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc-ccc------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL-VNF------------ 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l-~~~------------ 68 (143)
++-++|+||||||||||||.|+|.+.|++|++.++|. +++.++..+++++.+++||+..+ |+|
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~----~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p 102 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV----PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIP 102 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCc----ChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccc
Confidence 4568999999999999999999999999999999996 67888999999999999999875 222
Q ss_pred -ccCCh--hhHHHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHhh------cCCcccccCCccccchhhhhhhhh
Q 032336 69 -STLDI--QDKESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAVR------NVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 69 -~~~~~--~~~~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~~------~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
....+ ++.+.++++|.++++. ....+||||||||.+||+|+| +++||||| ||++.+|..-|..
T Consensus 103 ~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD---EPtsaLDi~HQ~~ 179 (259)
T COG4559 103 HRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD---EPTSALDIAHQHH 179 (259)
T ss_pred cccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec---CCccccchHHHHH
Confidence 11122 5666788999998763 333479999999999999999 44699999 9999999987764
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
.
T Consensus 180 t 180 (259)
T COG4559 180 T 180 (259)
T ss_pred H
Confidence 3
No 27
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.3e-32 Score=203.95 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=107.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++...|.|-||||||||+|+++++++|++|+|.++|.++. .++....+++| +++++|||.+.|+|+.++
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~-~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA-KLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchh-cCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 4678899999999999999999999999999999997443 23444445555 469999999999976542
Q ss_pred -----ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -----DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -----~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+..+++.++|+.+++ +++|+ +|||+||||.+||||+.+|++||+| ||||-||+=+...+
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD---EaFSALDPLIR~~m 203 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD---EAFSALDPLIRTEM 203 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec---CchhhcChHHHHHH
Confidence 23456788899999887 36666 7999999999999999999999999 99999988776543
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.7e-32 Score=209.74 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=101.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+|||||||||||++|+|+++|++|+|.++|..+ ...+. .++.++||||++.+|++.++
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~~~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV----THRSI--QQRDICMVFQSYALFPHMSLGENVGYGLKM 105 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence 467899999999999999999999999999999999743 32332 34679999999998864331
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..+.+.++++.+++. ++++ +||||||||+|||||+.+|++||+| ||++.+|....+++
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD---EP~s~LD~~~r~~l 175 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD---EPLSNLDANLRRSM 175 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 2245677788887763 4444 7999999999999999999999999 99999999888754
No 29
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.4e-32 Score=195.29 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=100.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccCC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTLD-------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~~-------- 72 (143)
++.++|+||||||||||||+|+|+.++.+|+|.++|+ ++...++. ..+..|+||||...+|+..++.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~----dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE----DITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCe----ecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 5789999999999999999999999999999999997 55555544 4556799999999988654321
Q ss_pred ---h-hhHH-HHHHHHHHhh----hhCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 73 ---I-QDKE-SVAKLVKLID----KSNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 73 ---~-~~~~-~~~~~l~~l~----~~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
. .... ..+++.+.+- ..++. .+||||||+++|||||+.+|++|+|| ||+..+-+.+++.+++
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD---EPs~GLaP~iv~~I~~ 177 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEGLAPKIVEEIFE 177 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec---CCccCcCHHHHHHHHH
Confidence 1 1111 1455555553 22333 37999999999999999999999999 8888888888876653
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=9.4e-32 Score=212.13 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=104.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------ 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------ 69 (143)
++.++|+||||||||||||+|+|+++|++|+|+++|. ++...+.+++++.++||+|++.+++..
T Consensus 29 Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~----~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD----DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE----EcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 4678999999999999999999999999999999997 444455667788899999998764211
Q ss_pred ---cC---ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 70 ---TL---DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 70 ---~~---~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. ...+.+.+.++++.+++. ++.+ +||||||||.|||||+++|++|||| ||++.||...+..++
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD---EPtsgLD~~~~~~l~ 179 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD---EPTASLDINHQVRTL 179 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence 01 234456788899988763 4444 7999999999999999999999999 999999998776543
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.4e-31 Score=203.92 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=104.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..+||+||||||||||+|+|+|+.+|++|+|.++|.. .... ....++++||+||++.+++..+.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~----~~~~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD----VVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe----CccC-HHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 35789999999999999999999999999999999963 2222 56778889999999987643321
Q ss_pred ---C-hhhHHHHHHHHHHhhhhC---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKSN---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ..+.+.++++++.+++.. ..+ +|+||||||.||+||+.+|++++|| |||+.+|......+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD---EPt~GLDp~~~~~~ 175 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD---EPTSGLDPESRREI 175 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCcCCCHHHHHHH
Confidence 1 234568899999998863 333 7999999999999999999999999 99999999877644
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-31 Score=197.40 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+ ...+++.++|++|++.+++..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGED----ISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 45789999999999999999999999999999999963 22222 2446678999999987653211
Q ss_pred ------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD---EPt~~LD~~~~~~l 175 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD---EPTAGLDPIASGVI 175 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence 111 1234567778887763 3333 7999999999999999999999999 99999999887754
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.3e-31 Score=209.87 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=100.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|.. +...+. .++.++||||++.+|++.++
T Consensus 40 Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~----i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 40 GEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD----ITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE----CCCCCH--HHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 45789999999999999999999999999999999973 333332 34679999999988864321
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..+.+.++++.+++. ++++ +||||||||+|||||+.+|+++|+| ||++.+|....+.+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD---EP~s~LD~~~r~~l 183 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD---ESLSALDYKLRKQM 183 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence 11 1234567788887763 4444 7999999999999999999999999 99999999887754
No 34
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=187.76 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=103.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh------hh---ccccHHHHHhhcchhccccccccccc---
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ------AV---HNSACRKLTKELCDVIEDYSLVNFST--- 70 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~---~~~~~~~~~~~ig~V~Q~~~l~~~~~--- 70 (143)
--+.|||.|||||||+||||+-+..|+.|.|.++|..+.- .+ ......++|.++++|||+++|+.+++
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe 112 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE 112 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence 3578999999999999999999999999999999975421 01 12233567788999999999985443
Q ss_pred -----------C-ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 -----------L-DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 -----------~-~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. ..+..++++.+|.++|++ +.|+ +|||||||++||||||.+|+++|+| ||++-||++-+-
T Consensus 113 NViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD---EPTSALDPElVg 189 (256)
T COG4598 113 NVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD---EPTSALDPELVG 189 (256)
T ss_pred HHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec---CCcccCCHHHHH
Confidence 1 234567788888888874 4555 7999999999999999999999999 999999987553
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-31 Score=208.23 Aligned_cols=125 Identities=12% Similarity=0.136 Sum_probs=100.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+.+|++|+|+++|..+ ...+ ..++.++||||++.+|++.++
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i----~~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL----SHVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCCC--HHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999733 2222 245679999999998865331
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.+|....+.+
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD---EP~s~LD~~~r~~l 188 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD---EPMGALDKKLRDRM 188 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 1 12234567778877763 4554 7999999999999999999999999 99999999887644
No 36
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=4.2e-31 Score=202.02 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=100.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +.. ....+++.++|+||++.+++..+.
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD----VVR-EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccc-CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999999999999999963 222 234566789999999876642211
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||||||+||+||+.+|+++++| ||++.+|...++.+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l 163 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD---EPTTGLDPRTRRAI 163 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 1 12234577888888763 4444 7999999999999999999999999 99999999887744
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=2.8e-31 Score=207.32 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=100.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC--ceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG--SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------- 71 (143)
+..++|+|||||||||||++|+|+++|++ |+|.++|..+ ..... .++.++||||++.+|++.++
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~----~~~~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l 104 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL----THAPP--HKRGLALLFQNYALFPHLKVEDNVAFGL 104 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC----CCCCH--HHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence 45789999999999999999999999999 9999999733 22222 34679999999988854321
Q ss_pred -----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+....+.++++.+++. ++++ +||||||||+|||||+.+|+++||| ||++.+|....+.+
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD---EP~s~LD~~~r~~l 176 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD---EPLSALDANIRANM 176 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHH
Confidence 1 12234677888888763 4444 7999999999999999999999999 99999999887754
No 38
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=3.2e-31 Score=215.64 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=103.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++... .+.+|+.++||+|++.+|.- ... ...
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~----~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV----SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----EhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence 5689999999999999999999999999999999997 55667 78899999999999998831 111 112
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++.+++. .+..+|||||||++||||+..+|+++++| |||+.+|.++.+++.
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD---E~TSaLD~~te~~I~ 510 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD---EPTEHLDAGTESELL 510 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 344566677665421 12337999999999999999999999999 999999998887654
No 39
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.3e-31 Score=205.13 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=100.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +...+ ....++.++||||++.+++..+
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~----i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD----LTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE----CCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 46789999999999999999999999999999999973 33322 2345678999999988764221
Q ss_pred -----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 -----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 -----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. +.++ +||||+|||+|||||+.+|+++|+| ||++.||...++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD---EPts~LD~~~~~~l~ 180 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD---EATSALDPATTRSIL 180 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 111 2234567788888763 3443 7999999999999999999999999 999999998877543
No 40
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=6.8e-31 Score=191.16 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc-ccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL-VNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l-~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|++|++.+ ++..+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD----LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----cccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 45789999999999999999999999999999999963 3333445567789999999742 21111
Q ss_pred ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+....+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~ 173 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD---EPTAGLDPAGRREL 173 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 11234566778877763 3333 7999999999999999999999999 99999999887744
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=4.4e-31 Score=193.01 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---H-HHHhhcchhcccccccccccC------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---R-KLTKELCDVIEDYSLVNFSTL------ 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~-~~~~~ig~V~Q~~~l~~~~~~------ 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+. . ..++.++|++|++.+++..+.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 105 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD----ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL 105 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEe----hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence 46789999999999999999999999999999999963 222221 1 234679999999876532110
Q ss_pred -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l 179 (218)
T cd03255 106 PLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD---EPTGNLDSETGKEV 179 (218)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc---CCcccCCHHHHHHH
Confidence 1 11234567778887763 3333 7999999999999999999999999 99999999887744
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=206.83 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|..+ ...+. .++.++||||++.+|+..++
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i----~~~~~--~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~ 102 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM----NDVPP--AERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCCCH--hHCCEEEEeCCcccCCCCCHHHHHHhHHhh
Confidence 467899999999999999999999999999999999733 22222 24679999999887743221
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. ++++ +||||||||+|||||+.+|++||+| ||++.||....+.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD---EPts~LD~~~~~~l 172 (369)
T PRK11000 103 AGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDAALRVQM 172 (369)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 1 12235677888888763 4444 7999999999999999999999999 99999999887644
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.6e-31 Score=192.50 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ .. ....+++.++|+||++.+++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~----~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV----VR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec----Cc-ChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence 467899999999999999999999999999999999632 22 22445677999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +.++ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD---EPt~~LD~~~~~~l 170 (220)
T cd03265 101 YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD---EPTIGLDPQTRAHV 170 (220)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCCHHHHHHH
Confidence 11 12234567788888763 3333 7999999999999999999999999 99999999888754
No 44
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.1e-31 Score=194.43 Aligned_cols=127 Identities=10% Similarity=0.146 Sum_probs=99.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+ ...+++.++|++|++.+++..++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD----INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe----ccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 45789999999999999999999999999999999963 32222 34456789999999876532110
Q ss_pred ---------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 72 ---------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 72 ---------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.....+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~ 179 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD---EPVASLDPAS 179 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHH
Confidence 112234566778877763 3333 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 180 ~~~l 183 (241)
T cd03256 180 SRQV 183 (241)
T ss_pred HHHH
Confidence 7744
No 45
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=8.4e-31 Score=188.06 Aligned_cols=129 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS---------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~---------- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. ........+++.++|++|++. ++...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~ 95 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD--YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL 95 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc--ccccchHHHHhhEEEEecChhhccccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999996331 112223455677999999973 33110
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +|+||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~ 166 (190)
T TIGR01166 96 NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD---EPTAGLDPAGREQM 166 (190)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 0111 1234567778877763 3333 7999999999999999999999999 99999999887754
No 46
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=8.3e-31 Score=191.91 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=97.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........++ +.++|++|++.+++..+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh-hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 4578999999999999999999999999999999996332 11111112233 57999999987653211
Q ss_pred ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l 180 (221)
T TIGR02211 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD---EPTGNLDNNNAKII 180 (221)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCCcCCHHHHHHH
Confidence 11 12234566778877763 3333 7999999999999999999999999 99999999887644
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=7.8e-31 Score=191.13 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. ..........++.++|++|++.+++..+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS-DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc-cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996332 1111112345678999999987663211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~~ 175 (214)
T cd03292 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD---EPTGNLDPDTTWEI 175 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHHHH
Confidence 111 1234567778877653 3333 7999999999999999999999999 99999999887744
No 48
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.7e-31 Score=190.98 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=98.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC------------
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------------ 71 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------------ 71 (143)
.++|+||||||||||+++|+|+++|++|+|.++|. ++...+ ..+++.++|++|++.+++..++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ----DVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC----ccccch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999996 333233 4567789999999876632211
Q ss_pred -C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l 169 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD---EPTAGLDPEERIRF 169 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 1 11234566778877653 3333 7999999999999999999999999 99999999888744
No 49
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=6.5e-31 Score=204.73 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=100.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|..+ .... ..++.++||||++.+|+..++
T Consensus 28 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV----SRLH--ARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCC--HHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 457899999999999999999999999999999999743 2222 234679999999887753211
Q ss_pred -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +.++ +||||||||+|||||+.+|+++|+| ||++.||...++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD---EP~s~LD~~~r~~l 175 (353)
T PRK10851 102 LPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD---EPFGALDAQVRKEL 175 (353)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 1 12235677888888763 4444 7999999999999999999999999 99999999888754
No 50
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=8.3e-31 Score=191.07 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN-RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc-cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996331 1111112345678999999987663211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... ...+.+.++++.+++. +.. .+||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~l 176 (214)
T TIGR02673 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD---EPTGNLDPDLSERI 176 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCcccCCHHHHHHH
Confidence 111 1234567778887763 233 37999999999999999999999999 99999999887743
No 51
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=9.8e-31 Score=193.98 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|+||++.+++..+
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT-KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh-hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 4578999999999999999999999999999999996332 1111112345678999999977653111
Q ss_pred -----------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -----------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -----------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
...+..+.+.++++.+++. +... +||||+|||+|||||+.+|+++++| ||++.+|...++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~ 183 (243)
T TIGR02315 107 YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD---EPIASLDPKTSKQ 183 (243)
T ss_pred cccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 0112334567778887763 3333 7999999999999999999999999 9999999987764
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 184 l 184 (243)
T TIGR02315 184 V 184 (243)
T ss_pred H
Confidence 3
No 52
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.8e-31 Score=191.86 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ...+ ..++.++|+||++.+++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~----~~~~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV----TGVP--PERRNIGMVFQDYALFPHLTVAENIAFGLKL 99 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc----CcCc--hhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence 467899999999999999999999999999999999633 2222 23467999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ....+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD---EPt~~LD~~~~~~l 169 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD---EPLSALDAKLREEL 169 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 01 12234567778887763 3333 7999999999999999999999999 99999999887754
No 53
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=8.7e-31 Score=200.66 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=99.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+ ... ....++.+||+||++.+++..+
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~----~~~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSR-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEec----ccc-hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 457899999999999999999999999999999999733 222 2346778999999988763221
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+....+.++++.+++. +..+ +|+||+|||+||+||+++|++++|| ||++.+|...+..+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD---EPt~gLD~~~~~~l 177 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD---EPTTGLDPQARHLM 177 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCcCCCHHHHHHH
Confidence 11 12234566778887763 3333 7999999999999999999999999 99999999887743
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=9.4e-31 Score=191.27 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .. ....+++.++|+||++.+++..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 105 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV----VK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL 105 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc----cc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999733 22 23455678999999987653211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l 175 (218)
T cd03266 106 YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD---EPTTGLDVMATRAL 175 (218)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCcCCCHHHHHHH
Confidence 111 2234567788887763 3333 7999999999999999999999999 99999999887643
No 55
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.2e-31 Score=204.51 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=101.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~ 73 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|..+............++.++|+||++.+|+..++ ..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 103 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK 103 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh
Confidence 4578999999999999999999999999999999996432100011123356789999999888754332 11
Q ss_pred hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.+.++++.+++. ++.+ +||||||||+|||||+.+|+++|+| ||++.+|....+.+
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD---EPts~LD~~~~~~l 167 (352)
T PRK11144 104 SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD---EPLASLDLPRKREL 167 (352)
T ss_pred hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence 2234677788888763 3443 7999999999999999999999999 99999999887744
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=192.63 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=98.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HHH-hhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|.. +...+.. .++ +.++|+||++.+++..+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP----MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE----cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 45789999999999999999999999999999999963 3333322 233 56999999987653211
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~l 184 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD---EPTGNLDARNADSI 184 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence 11 12234577788888763 3333 7999999999999999999999999 99999999887743
No 57
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=6.8e-31 Score=218.49 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=102.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~ 74 (143)
++.+||+|+||||||||+|+|+|+++|++|+|.+||. ++...+...+|+.|+||+|++.+|.- ... . ..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~----dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV----DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 67778889999999999999988721 111 1 11
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
..+.+.++++..+. . .+.-+|||||||++||||+.++|++|+|| |||+.+|.++...+++
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD---EaTSaLD~~sE~~I~~ 650 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD---EATSALDPETEAIILQ 650 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CcccccCHhHHHHHHH
Confidence 12344444444332 1 22237999999999999999999999999 9999999988775543
No 58
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.6e-31 Score=206.29 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=100.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---H-HHhhcchhcccccccccccC------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---K-LTKELCDVIEDYSLVNFSTL------ 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~-~~~~ig~V~Q~~~l~~~~~~------ 71 (143)
++.++|+||||||||||+|+|+|+++|++|+|+++|.. +...+.. . .++.++||||++.+|+..+.
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~----i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD----IAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEE----CCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 46799999999999999999999999999999999973 3333322 2 23579999999887743221
Q ss_pred -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. .+..+.+.++++.+++. +.++ +||||||||+|||||+.+|++||+| ||++.+|...++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD---EPts~LD~~~r~~l~ 204 (400)
T PRK10070 130 GMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD---EAFSALDPLIRTEMQ 204 (400)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence 1 12234667788888763 4443 7999999999999999999999999 999999998887543
No 59
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=9.1e-31 Score=189.92 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc---------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS---------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~---------~ 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .. ...++.++|++|++. ++... .
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 98 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI----KA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh----hh---HHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence 467899999999999999999999999999999999632 21 345567999999963 22110 0
Q ss_pred CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
........+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 165 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD---EPTSGLDYKNMERV 165 (205)
T ss_pred hcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHH
Confidence 0111234677888888763 3333 7999999999999999999999999 99999999887744
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=1.3e-30 Score=190.83 Aligned_cols=126 Identities=13% Similarity=0.009 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ... ...+++.++|++|++.+++..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 102 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI----RTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARL 102 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec----ccc-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999632 222 2455677999999987653211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|...++..
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l 172 (220)
T cd03263 103 KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD---EPTSGLDPASRRAI 172 (220)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCCCCCCHHHHHHH
Confidence 111 1234567778777663 2333 7999999999999999999999999 99999999887744
No 61
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=1.5e-30 Score=214.04 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=103.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~ 74 (143)
+..+||+||||||||||+++|+|++ |++|+|.++|. ++...+...+|+.|+||+|++.+|.- .... ..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~----~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI----ELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCE----ecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 4689999999999999999999999 99999999997 56777888899999999999998831 1111 12
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
+.+.+.++++..++ . .+..+|||||||++||||+..+|++++|| |||+.+|.++.+++.+
T Consensus 451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLD---E~TSaLD~~te~~i~~ 526 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLD---EPTASLDAHSEQLVMQ 526 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHH
Confidence 23455555555432 1 22337999999999999999999999999 9999999999886653
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.3e-30 Score=201.62 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=101.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~~--------- 70 (143)
++.++|+|+||||||||+++|+|+++|++|+|.++|..+. .+.....+.+++.++||||++ .+++..+
T Consensus 47 Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL-GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC-cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 4679999999999999999999999999999999997432 111122344667899999997 3443211
Q ss_pred ------CCh-hhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ------LDI-QDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ------~~~-~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++ .+.++ +||||+|||+|||||+.+|+++++| ||++.||..++..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD---EPts~LD~~~~~~i~ 201 (331)
T PRK15079 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD---EPVSALDVSIQAQVV 201 (331)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHH
Confidence 111 223566778888776 24444 7999999999999999999999999 999999999887543
No 63
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=1.3e-30 Score=189.38 Aligned_cols=125 Identities=12% Similarity=0.016 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +... ...++.++|+||++.+++..++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 99 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS----YQKN--IEALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc----ccch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence 45789999999999999999999999999999999963 2222 3456779999999876532211
Q ss_pred ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.+.+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l 165 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD---EPTNGLDPDGIKEL 165 (208)
T ss_pred cCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHHHHH
Confidence 011234567778887763 3333 7999999999999999999999999 99999999887744
No 64
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=196.81 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=100.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|. ++...+...+++.++|+||++. ++...+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD----LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----ECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 4678999999999999999999999999999999997 3333444566778999999873 321110
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|++|++| ||++.+|...+..++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~~LD~~~~~~l~ 180 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD---EATSMLDPEGRLELI 180 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence 111 2235677888888763 3333 7999999999999999999999999 999999998877543
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=197.33 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc--cHHHHHhhcchhccccc--ccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYS--LVNFS-------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~--l~~~~-------- 69 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ ... ....+++.++||||++. ++...
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 108 (287)
T PRK13637 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI----TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG 108 (287)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC----CCcCccHHHHhhceEEEecCchhccccccHHHHHHhH
Confidence 467999999999999999999999999999999999733 222 23456778999999873 33110
Q ss_pred ----cCCh-hhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 ----TLDI-QDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 ----~~~~-~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD---EPt~gLD~~~~~~l 183 (287)
T PRK13637 109 PINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD---EPTAGLDPKGRDEI 183 (287)
T ss_pred HHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCccCCCHHHHHHH
Confidence 0111 2234677888888763 3333 7999999999999999999999999 99999999887754
No 66
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=195.91 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S-- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~-- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|+||++. ++.. .
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR----EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE----ECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence 4679999999999999999999999999999999996 3333444566778999999873 2210 0
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~~LD~~~~~~l 177 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD---EPMAYLDPRGQETL 177 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence 0111 2234567778887763 3333 7999999999999999999999999 99999999888754
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=2e-30 Score=191.56 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +.......+ +..++|+||++.+++..++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED----ITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE----CCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 45789999999999999999999999999999999963 333333333 4569999999876532110
Q ss_pred ---------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 72 ---------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 72 ---------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
..+..+.+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~ 178 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD---EPAAGLNPEE 178 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHH
Confidence 012234567778877763 2333 7999999999999999999999999 9999999987
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 179 ~~~l 182 (236)
T cd03219 179 TEEL 182 (236)
T ss_pred HHHH
Confidence 7643
No 68
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=2e-30 Score=187.94 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+. .+.... ....++.++|++|++.+++..+.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP-PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 4678999999999999999999999999999999996321 011111 12355679999999876642211
Q ss_pred ----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +|+||+||++|||||+.+|+++++| ||++.+|...++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD---EPt~~LD~~~~~~l 173 (206)
T TIGR03608 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD---EPTGSLDPKNRDEV 173 (206)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcCCCCHHHHHHH
Confidence 1 12234567778887763 3333 7999999999999999999999999 99999999887754
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=2.9e-30 Score=189.30 Aligned_cols=130 Identities=13% Similarity=0.051 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++.+++..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT-RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 4678999999999999999999999999999999996332 1111122335678999999987542211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +.. .+||||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 176 (222)
T PRK10908 107 AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD---EPTGNLDDALSEGI 176 (222)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHHHH
Confidence 111 1233466777877753 333 37999999999999999999999999 99999999887644
No 70
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=200.23 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=101.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~--------- 70 (143)
++.++|+|+||||||||+++|+|+++|++|+|.++|..+. .......+.+++.++||||++. +++..+
T Consensus 41 Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL-KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC-cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 4679999999999999999999999999999999997432 1122223456678999999973 332111
Q ss_pred -----CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 -----LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 -----~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. +.++ +||||+|||+|||||+.+|++|++| ||++.||...+..++
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD---EPts~LD~~~~~~i~ 194 (327)
T PRK11308 120 LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD---EPVSALDVSVQAQVL 194 (327)
T ss_pred HHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE---CCCccCCHHHHHHHH
Confidence 111 2345678888888762 4444 7999999999999999999999999 999999999887654
No 71
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=179.72 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=103.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceee-h-hhhccccHHHHHhhcchhcccccccccccC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFY-L-QAVHNSACRKLTKELCDVIEDYSLVNFSTL-------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~-~-~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------- 71 (143)
+..+.++||||||||||+|.++-+.-|.+|+..+.|... . ....+....++|+.+|+|||.+.++|+.++
T Consensus 28 getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 457889999999999999999999999999999877421 1 111223346789999999999999875531
Q ss_pred ------C-hhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ------D-IQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ------~-~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. .+....+.++|+++.+ +++++ +||||||||+|||||+.+|++|++| ||++-+|.++.-
T Consensus 108 ~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfd---eptaaldpeita 178 (242)
T COG4161 108 CRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFD---EPTAALDPEITA 178 (242)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeec---CcccccCHHHHH
Confidence 1 2334566777777754 57777 5999999999999999999999999 999999998764
No 72
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=2e-30 Score=202.23 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=100.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|..+............++.++|+||++.+|+..+.
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 102 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKR 102 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhc
Confidence 4678999999999999999999999999999999997432100000122346679999999887743221
Q ss_pred -C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++|+| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD---EPts~LD~~~~~~l 170 (354)
T TIGR02142 103 ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD---EPLAALDDPRKYEI 170 (354)
T ss_pred cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHHHHHH
Confidence 1 12234577788888763 3443 7999999999999999999999999 99999999887744
No 73
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-30 Score=192.09 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=99.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +........++.++|+||++.+++..++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED----IREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE----cCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999999999999963 3333344556789999999876632111
Q ss_pred ---C-hhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 174 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD---EPFGALDPITRDQL 174 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence 1 12234567778887664 2332 7999999999999999999999999 99999999887644
No 74
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-30 Score=196.78 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=100.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S-- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~-- 69 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+............++.++||||++. ++.. .
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~ 112 (290)
T PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPM 112 (290)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHH
Confidence 467999999999999999999999999999999999743210112234456778999999863 4321 0
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.||...+..+.
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD---EPt~~LD~~~~~~l~ 185 (290)
T PRK13634 113 NFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD---EPTAGLDPKGRKEMM 185 (290)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence 0111 2234677888888763 3333 7999999999999999999999999 999999998877543
No 75
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-30 Score=196.50 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=99.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S-- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~-- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+...........+++.++||||++. ++.. .
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~ 112 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK 112 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHH
Confidence 357899999999999999999999999999999999743211111234567788999999863 4320 0
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD---EPt~~LD~~~~~~l 184 (286)
T PRK13646 113 NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD---EPTAGLDPQSKRQV 184 (286)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence 0111 2235677888888763 2333 7999999999999999999999999 99999999888744
No 76
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=3.3e-30 Score=189.61 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HH-Hhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KL-TKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~-~~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ ...+.. .. ++.++|++|++.+++..+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~ 111 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL----HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVEL 111 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc----ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHH
Confidence 467999999999999999999999999999999999633 222222 22 356999999987653211
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||+||++|||||+.+|+++++| ||++.+|...++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 185 (228)
T PRK10584 112 PALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD---EPTGNLDRQTGDKI 185 (228)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence 11 12234667778887763 3333 7999999999999999999999999 99999999887754
No 77
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=3.2e-30 Score=202.25 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=101.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHH-hhcchhcccccccccccC------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLT-KELCDVIEDYSLVNFSTL------ 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~-~~ig~V~Q~~~l~~~~~~------ 71 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|.....++...+ .++.+ +.++||||++.++++.++
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~ 129 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF 129 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH
Confidence 46789999999999999999999999999999999852100222222 22333 579999999988753321
Q ss_pred -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. .+..+.+.++++.+++. +.++ +||||||||+|||||+.+|++||+| ||++.+|..++..+.
T Consensus 130 ~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD---EPts~LD~~~r~~l~ 204 (382)
T TIGR03415 130 GLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD---EPFSALDPLIRTQLQ 204 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence 1 12235677888888763 3443 7999999999999999999999999 999999999877543
No 78
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=2.8e-30 Score=200.31 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +... ....++.+||+||++.+++..+
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~----~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 141 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVP----VPAR-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEE----CCcc-hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999999999999973 2222 2456778999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +|+||+|||+||+||+++|++++|| ||++.+|...+..+
T Consensus 142 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD---EPt~gLD~~~r~~l 211 (340)
T PRK13536 142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD---EPTTGLDPHARHLI 211 (340)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 11 12234566778877764 3333 7999999999999999999999999 99999999887744
No 79
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-30 Score=196.39 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccc--------c--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNF--------S-- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~--------~-- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+...........+++.++||||++ .++.. .
T Consensus 32 Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~ 111 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQ 111 (288)
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHH
Confidence 45799999999999999999999999999999999974321001123456778899999987 34321 0
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +....+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD---EPt~gLD~~~~~~l 183 (288)
T PRK13643 112 NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD---EPTAGLDPKARIEM 183 (288)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCccCCCHHHHHHH
Confidence 0111 2234567778777762 2333 7999999999999999999999999 99999999887644
No 80
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-30 Score=184.36 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=100.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++++|||||||||||++++|+.+|+.|+|.++|+.+ .... ..-|+|||+..|+|+.+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i----~gPg-----aergvVFQ~~~LlPWl~~~dNvafgL~l 101 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI----EGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQL 101 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec----cCCC-----ccceeEeccCccchhhHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999733 2211 23689999999887543
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+ +..+.+.+.+..+++. .+++ +|||+||||.|||||+.+|++|++| ||+.-+|.-+.|.+.
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD---EPfgAlDa~tRe~mQ 172 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD---EPFGALDALTREQMQ 172 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec---CchhhHHHHHHHHHH
Confidence 222 3456778888888874 3444 7999999999999999999999999 999999988877653
No 81
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=3.2e-30 Score=197.27 Aligned_cols=126 Identities=11% Similarity=0.016 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .. .....++.++|+||++.+++..+
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~-~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 104 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV----PS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY 104 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----cc-cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHH
Confidence 467899999999999999999999999999999999632 22 22445678999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l 174 (303)
T TIGR01288 105 FGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD---EPTTGLDPHARHLI 174 (303)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 11 11223456677777653 3333 7999999999999999999999999 99999999887743
No 82
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.4e-30 Score=179.49 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=106.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~ 70 (143)
++.++|.||||||||||+|+++.+++|++|+++|.|+ +++...+...|+.++|+.|.+.||+.. .
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge----~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r 104 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE----DVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR 104 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCc----cccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence 5688999999999999999999999999999999997 677888899999999999999987311 1
Q ss_pred CChhhHHHHHHHHHHhhhhC------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 LDIQDKESVAKLVKLIDKSN------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~~~------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
-...+...+.+.+.++++.. ...+||||+||++++|-|...|++|||| |+++-||..+.+
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD---E~TsALD~~nkr 170 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD---EITSALDESNKR 170 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec---CchhhcChhhHH
Confidence 12345677888899887642 2237999999999999999999999999 999999987665
No 83
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=3.9e-30 Score=187.30 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+.. ........++.++|++|++.+++..+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 103 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD--DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK 103 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc--cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence 45789999999999999999999999999999999963310 11233456678999999987653211
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l 174 (213)
T cd03262 104 VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD---EPTSALDPELVGEV 174 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence 111 1234566777777653 3333 7999999999999999999999999 99999999887644
No 84
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.3e-30 Score=189.58 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=98.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .... ....++.++|++|++.+++..+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL----TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc----ccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 467899999999999999999999999999999999733 2222 22346779999999877642211
Q ss_pred ------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ...+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l 179 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD---EATSALDPETTQSI 179 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCCcCCHHHHHHH
Confidence 11 1234567778887763 3333 7999999999999999999999999 99999999887743
No 85
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=2.7e-30 Score=215.81 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=105.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~ 75 (143)
+..+||+||||||||||+|+|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.- ... .+.+
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~ 554 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ----DLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLT 554 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE----EcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCC
Confidence 5689999999999999999999999999999999997 56677888899999999999998731 111 1123
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
.+.+.++++.+++. .+..+|||||||++||||+..+|+++++| |||+.+|..+.+++++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD---EpTS~LD~~te~~i~~ 629 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD---EATSALDNRTQAIVSE 629 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHH
Confidence 44566666665431 12337999999999999999999999999 9999999998876643
No 86
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.3e-30 Score=187.01 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------C--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------L-- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------~-- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +..... .++.++|++|++.+++..+ .
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~----~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 97 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD----VTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----cCcCCH--hHccEEEEecccccCCCCcHHHHHhccccc
Confidence 46789999999999999999999999999999999963 322222 2467999999987653211 0
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.....+.+.++++.+++. +..+ +|+||+||++||||++.+|+++++| ||++.+|...++.+.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD---EP~~~LD~~~~~~l~ 168 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD---EPFAALDPALRAEML 168 (211)
T ss_pred ccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence 112344677788887763 3333 7999999999999999999999999 999999998887543
No 87
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=4.8e-30 Score=187.05 Aligned_cols=122 Identities=19% Similarity=0.167 Sum_probs=96.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--cc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--ST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~--------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|. ++. .+++.++|++|++.+... .+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~----~~~-----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK----PLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc----cHH-----HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence 4578999999999999999999999999999999985 221 356679999998764210 00
Q ss_pred C---------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L---------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~---------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .....+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|....+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l 171 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD---EPFAGVDPKTQEDI 171 (213)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0 112334677788887763 3333 7999999999999999999999999 99999999887643
No 88
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-30 Score=190.80 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c----CC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T----LD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~----~~ 72 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|++|++.+++.. . ..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~ 104 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVD----IKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK 104 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----hhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhc
Confidence 45789999999999999999999999999999999963 33334445667899999998765310 0 01
Q ss_pred hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 170 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD---EPTSALDPTSTEII 170 (241)
T ss_pred CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 11234566777777662 3333 7999999999999999999999999 99999999887754
No 89
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=9.6e-31 Score=191.09 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|||||||||||++++|+|+++|++|+|.++|+ ++...++.++. ..|+.-||.+.+|+.+++
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~----~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR----DITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred CeEEEEECCCCCCceeeeeeecccccCCCceEEECCc----ccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence 4679999999999999999999999999999999997 55666655544 458888999888743210
Q ss_pred -----------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336 72 -----------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 72 -----------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~ 129 (143)
..+..+++.++|+++++. +... +|+|||++++||||||.+|++|||| ||++.+-.
T Consensus 106 ~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD---EPaAGln~ 182 (250)
T COG0411 106 ARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD---EPAAGLNP 182 (250)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec---CccCCCCH
Confidence 123356777888888764 3333 7999999999999999999999999 99988766
Q ss_pred hhhh
Q 032336 130 EVQE 133 (143)
Q Consensus 130 ~~~~ 133 (143)
.-..
T Consensus 183 ~e~~ 186 (250)
T COG0411 183 EETE 186 (250)
T ss_pred HHHH
Confidence 5443
No 90
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.8e-30 Score=189.20 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +. ..++.++|++|++.+++..+.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~-----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP----VT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLEL 100 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----Cc-----cccCcEEEEecccccccCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999963 22 134569999999876532211
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ....+.+.++++.+++. +.. .+||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~~~~~ 170 (220)
T cd03293 101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD---EPFSALDALTREQL 170 (220)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCHHHHHHH
Confidence 1 11234567778887763 333 37999999999999999999999999 99999999888754
No 91
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=3.5e-30 Score=189.38 Aligned_cols=127 Identities=10% Similarity=0.028 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc-----ccCCceEEEcceeehhhhcccc--HHHHHhhcchhcccccccccccC---
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL-----SLIGSNICCSNVFYLQAVHNSA--CRKLTKELCDVIEDYSLVNFSTL--- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~-----~~~~G~i~~~g~~~~~~~~~~~--~~~~~~~ig~V~Q~~~l~~~~~~--- 71 (143)
+..++|+||||||||||+++|+|++ +|++|+|.++|..+ .... ...+++.++|++|++.++. .++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~ 100 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI----YDLDVDVLELRRRVGMVFQKPNPFP-GSIYDN 100 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh----hhcchHHHHHHhhEEEEecCchhcc-ccHHHH
Confidence 4678999999999999999999999 99999999999632 2222 3456678999999987651 110
Q ss_pred ----------Ch--hhHHHHHHHHHHhhhh---CC----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ----------DI--QDKESVAKLVKLIDKS---NG----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ----------~~--~~~~~~~~~l~~l~~~---~~----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. +..+.+.++++.+++. +. ..+||||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~ 177 (227)
T cd03260 101 VAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD---EPTSALDPIST 177 (227)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 11 1234567778887652 22 347999999999999999999999999 99999999888
Q ss_pred hhcc
Q 032336 133 EKYI 136 (143)
Q Consensus 133 ~~~~ 136 (143)
+.+.
T Consensus 178 ~~l~ 181 (227)
T cd03260 178 AKIE 181 (227)
T ss_pred HHHH
Confidence 7543
No 92
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.6e-30 Score=195.05 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=98.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF----------S 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~----------~ 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+............++.++|++|++. ++.. .
T Consensus 33 Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 112 (287)
T PRK13641 33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPK 112 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHH
Confidence 467899999999999999999999999999999999743211011123455678999999863 3310 0
Q ss_pred --cCC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD---EPt~gLD~~~~~~l 184 (287)
T PRK13641 113 NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD---EPAAGLDPEGRKEM 184 (287)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 011 12234577788887763 3333 7999999999999999999999999 99999999887644
No 93
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=3.8e-30 Score=215.54 Aligned_cols=129 Identities=16% Similarity=0.097 Sum_probs=104.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.- ... ...
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~ 580 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI----PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCC
Confidence 5689999999999999999999999999999999997 56667788899999999999998731 111 112
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
+.+.+.++++..++ . .+..+|||||||++||||+..+|+++++| |||+.+|..+.+++++
T Consensus 581 ~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD---EptS~LD~~te~~i~~ 656 (710)
T TIGR03796 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD---EATSALDPETEKIIDD 656 (710)
T ss_pred CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE---CccccCCHHHHHHHHH
Confidence 33455566665432 1 23337999999999999999999999999 9999999988876543
No 94
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=5.2e-30 Score=188.94 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=97.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+... .++.++|++|++.+++..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD----ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE 101 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe----cccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHH
Confidence 45789999999999999999999999999999999963 22223333 3456999999987653211
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +....+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~~ 172 (232)
T cd03218 102 IRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD---EPFAGVDPIAVQDI 172 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence 111 1234566777777663 3333 7999999999999999999999999 99999999887743
No 95
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=4.5e-30 Score=210.88 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=104.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~ 73 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|.. ... ..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 444 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH----DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE----EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 55667778889999999999998731 111 11
Q ss_pred hhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 QDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++.+++ . .+..+||||+||++||||+..+|+++++| ||++.+|.++..+++
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD---EptsaLD~~t~~~i~ 520 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD---EATSALDTESERAIQ 520 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE---CccccCCHHHHHHHH
Confidence 234566666666542 1 12237999999999999999999999999 999999999887654
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=7.4e-30 Score=186.92 Aligned_cols=127 Identities=12% Similarity=0.068 Sum_probs=96.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+... .++.++|+||++.+++..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD----ITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----cCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence 46799999999999999999999999999999999963 33333333 34679999999876642211
Q ss_pred ---ChhhHHHHHHHHHHhh-hh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DIQDKESVAKLVKLID-KS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~~~~~~~~~~l~~l~-~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+....+.++++.++ +. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 171 (222)
T cd03224 102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEGLAPKIVEEI 171 (222)
T ss_pred hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHHHHH
Confidence 1112234556666663 32 3333 7999999999999999999999999 99999999887644
No 97
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.7e-30 Score=193.41 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .......... ++.++|++|++.+++..++
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA-AMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc-ccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 4578999999999999999999999999999999996321 1111111122 3569999999876632111
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. +..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|....+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD---EPt~~LD~~~~~~l~ 200 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD---EAFSALDPLIRREMQ 200 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHHH
Confidence 11 1234567778887763 3333 7999999999999999999999999 999999998877443
No 98
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=6.2e-30 Score=192.70 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=97.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+. .........+++.++|+||++.+++..++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP-AMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc-ccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996321 11111123346679999999876532110
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .....+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l 182 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD---EPFVGQDPITMGVL 182 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence 11 1123456677777763 3333 7999999999999999999999999 99999999887744
No 99
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.3e-30 Score=186.43 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=96.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.. ..++.++|++|++.+++..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 97 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK----PLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQL 97 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC----chhH----HHHccEEEeccCCcCCcCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996 2221 34567999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD---EP~~~LD~~~~~~~ 167 (210)
T cd03269 98 KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD---EPFSGLDPVNVELL 167 (210)
T ss_pred cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 11 12234567777777753 3333 7999999999999999999999999 99999998877643
No 100
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=7.7e-30 Score=195.01 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=100.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +.. ....+++.++|+||++.+++..+
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~----~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED----VLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 46799999999999999999999999999999999963 222 23456778999999987764221
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +|+||+|||++|+|++.+|+++++| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD---EPt~gLD~~~~~~l 172 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD---EPTTGLDPNQLVEI 172 (301)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 12234577788888763 4444 7999999999999999999999999 99999999887643
No 101
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=5e-30 Score=211.08 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=104.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~ 75 (143)
+..++|+|+||||||||+++|+|+++|++|+|.++|. ++...+.+.++++|+||+|++.+|.. ... ...+
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~----~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~ 442 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR----PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDIS 442 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE----EhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCC
Confidence 4689999999999999999999999999999999997 56677888999999999999998831 111 1223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++++.+++. .+..+||||+||++||||+..+|+++++| ||++.+|.++.+.+.
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD---Epts~LD~~t~~~i~ 516 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD---EATANIDSGTEQAIQ 516 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence 34566676665431 12237999999999999999999999999 999999999877554
No 102
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.9e-30 Score=192.39 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=99.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +.......+++.++|++|++.+++..+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP----LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYP 112 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEe----hhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccc
Confidence 46789999999999999999999999999999999963 333344556678999999866542110
Q ss_pred C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .....+.+.++++.+++. +..+ +||||+|||+||||++.+|+++|+| ||++.+|....+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~~ 186 (265)
T PRK10575 113 WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD---EPTSALDIAHQVDV 186 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 0 112234567788887763 3333 7999999999999999999999999 99999999887643
No 103
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.6e-30 Score=197.71 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=100.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhh------------ccccHHHHHhhcchhccccc--ccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV------------HNSACRKLTKELCDVIEDYS--LVN 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~------------~~~~~~~~~~~ig~V~Q~~~--l~~ 67 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+.... .......+++.++||||++. +|.
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~ 131 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK 131 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc
Confidence 4679999999999999999999999999999999997442210 00123567788999999873 442
Q ss_pred c--------c----cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 68 F--------S----TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 68 ~--------~----~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
. . .... +....+.++++.+++. +..+ +||||+|||+|||||+.+|+++|+| ||++.+|
T Consensus 132 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLD---EPtsgLD 208 (320)
T PRK13631 132 DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD---EPTAGLD 208 (320)
T ss_pred chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCccCCC
Confidence 1 0 0111 2234567778887763 2333 7999999999999999999999999 9999999
Q ss_pred hhhhhhcc
Q 032336 129 AEVQEKYI 136 (143)
Q Consensus 129 ~~~~~~~~ 136 (143)
...++.++
T Consensus 209 ~~~~~~l~ 216 (320)
T PRK13631 209 PKGEHEMM 216 (320)
T ss_pred HHHHHHHH
Confidence 99887553
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.4e-30 Score=190.93 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+.... +..++|+||++.+++..++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 106 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH----IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQH 106 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE----CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhh
Confidence 46799999999999999999999999999999999963 333333333 3458899999876532110
Q ss_pred -----------------C---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336 72 -----------------D---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 72 -----------------~---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~ 183 (255)
T PRK11300 107 QQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD---EPAAG 183 (255)
T ss_pred ccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccC
Confidence 0 01123456677777663 3333 7999999999999999999999999 99999
Q ss_pred hhhhhhhhc
Q 032336 127 SLAEVQEKY 135 (143)
Q Consensus 127 ~~~~~~~~~ 135 (143)
+|...+..+
T Consensus 184 LD~~~~~~l 192 (255)
T PRK11300 184 LNPKETKEL 192 (255)
T ss_pred CCHHHHHHH
Confidence 999887643
No 105
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=4.4e-30 Score=187.16 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ...+. .++.++|++|++.+++..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV----TDLPP--KDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CcCCc--ccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999633 22221 1356999999987653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EPt~~LD~~~~~~l 169 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD---EPLSNLDAKLRVQM 169 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 12234566777877663 3333 7999999999999999999999999 99999999887754
No 106
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.2e-30 Score=182.79 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=88.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ .... ..+++.++|+||++.+++..+. . +.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~----~~~~-~~~~~~i~~~~q~~~~~~~~tv--~--~~--- 93 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI----KKEP-EEVKRRIGYLPEEPSLYENLTV--R--EN--- 93 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc----ccch-HhhhccEEEEecCCccccCCcH--H--HH---
Confidence 467899999999999999999999999999999999633 2222 4456789999999876543221 1 11
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+. +|+||+|||+||||++.+|+++++| ||++.+|...++++
T Consensus 94 -~~---------LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l 134 (173)
T cd03230 94 -LK---------LSGGMKQRLALAQALLHDPELLILD---EPTSGLDPESRREF 134 (173)
T ss_pred -hh---------cCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence 11 8999999999999999999999999 99999999887744
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-29 Score=185.41 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=98.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----------
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----------- 71 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----------- 71 (143)
..++|+||||||||||+++|+|+++|++|+|.++|..+............++.++|++|++.+++..+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999999999999999996331100001123456779999999876632211
Q ss_pred C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. ....+.+.++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|...++.+.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l~ 171 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD---EPFSALDRALRLQLL 171 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence 1 12234567778887763 3333 7999999999999999999999999 999999998877543
No 108
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=1.1e-29 Score=184.02 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~ 73 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ ... ...+++.++|++|++.+++..+. ..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 100 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL----DFQ-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD 100 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec----ccc-cHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence 467999999999999999999999999999999999632 211 23466789999998776532221 11
Q ss_pred hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.+.++++.+++. +..+ +||||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 101 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~l 164 (201)
T cd03231 101 HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD---EPTTALDKAGVARF 164 (201)
T ss_pred ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence 1234667778887763 3333 7999999999999999999999999 99999999887754
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=9.6e-30 Score=188.18 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=97.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ..... ..++.++|++|++.+++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i----~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 101 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL----RRAPR-AALARLGVVFQQPTLDLDLSVRQNLRYHAAL 101 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----ccCCh-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence 467899999999999999999999999999999999633 22222 23357999999977642211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+.+.++++.+++. +..+ +||||+||++||||++.+|+++++| ||++.+|...++.+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 102 HGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD---EPTVGLDPASRAAIV 172 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCCCHHHHHHHH
Confidence 11 11234566777777753 3333 7999999999999999999999999 999999999887543
No 110
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=1.1e-29 Score=186.85 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~ 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|++|++.+++.. .
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~ 108 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE----DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR 108 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE----EcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhc
Confidence 4578999999999999999999999999999999996 333334445667899999998765310 0
Q ss_pred CChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 LDIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.+.++++.+++. +..+ +|+||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 176 (225)
T PRK10247 109 NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD---EITSALDESNKHNV 176 (225)
T ss_pred CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0111234566778887762 3333 7999999999999999999999999 99999999887744
No 111
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.3e-30 Score=193.00 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=99.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|+||++. ++...+
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV----LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE----CCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 45789999999999999999999999999999999973 333444556678999999973 321111
Q ss_pred ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~gLD~~~~~~l~ 180 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD---EATSMLDPRGRREVL 180 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 11 12234577778877763 2333 7999999999999999999999999 999999999887554
No 112
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7e-30 Score=195.58 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhh--------------hc------cccHHHHHhhcchhcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQA--------------VH------NSACRKLTKELCDVIE 61 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--------------~~------~~~~~~~~~~ig~V~Q 61 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|...... +. ......+++.+|||||
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q 112 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ 112 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEee
Confidence 357999999999999999999999999999999987532100 00 0123456788999999
Q ss_pred ccc--ccc--------cc----cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCC
Q 032336 62 DYS--LVN--------FS----TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYP 120 (143)
Q Consensus 62 ~~~--l~~--------~~----~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~ 120 (143)
++. ++. +. .... +..+.+.++++.+++. +..+ +||||+|||+||+||+.+|+++++|
T Consensus 113 ~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLD-- 190 (305)
T PRK13651 113 FAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFD-- 190 (305)
T ss_pred CcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe--
Confidence 863 331 00 0111 2345678888888763 3333 7999999999999999999999999
Q ss_pred ccccchhhhhhhhhcc
Q 032336 121 SFHLFQSLAEVQEKYI 136 (143)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (143)
||++.+|...+..+.
T Consensus 191 -EPt~~LD~~~~~~l~ 205 (305)
T PRK13651 191 -EPTAGLDPQGVKEIL 205 (305)
T ss_pred -CCCCCCCHHHHHHHH
Confidence 999999998876543
No 113
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=9.3e-30 Score=188.74 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+... .++.++|++|++.+++..++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD----LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCee----cCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 45789999999999999999999999999999999963 33333332 34569999999876632110
Q ss_pred -------------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 -------------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 -------------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
..+....+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllD---EPt~~LD~~~~~ 180 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLD---EPVAGMTDEETE 180 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCccCCCHHHHH
Confidence 012334567778887763 3333 7999999999999999999999999 999999999887
Q ss_pred hcc
Q 032336 134 KYI 136 (143)
Q Consensus 134 ~~~ 136 (143)
.+.
T Consensus 181 ~l~ 183 (242)
T TIGR03411 181 KTA 183 (242)
T ss_pred HHH
Confidence 543
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=191.48 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=97.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccc----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNF----------S 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~----------~ 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. ........+++.++|++|++.+ +.. .
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~--~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~ 104 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD--YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR 104 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc--cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999997431 1122334566789999998752 210 0
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++|+| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l 175 (271)
T PRK13638 105 NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD---EPTAGLDPAGRTQM 175 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0111 1223456777777653 3333 7999999999999999999999999 99999999887644
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=190.27 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~ 73 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++ ..+++.++|++|++.+++..++ ..
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~----~~-----~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 108 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA----PL-----AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG 108 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE----EH-----HHhhCceEEEecCccCCCCCcHHHHHHhcccc
Confidence 4578999999999999999999999999999999885 22 2345679999999877643221 11
Q ss_pred hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 109 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l 172 (257)
T PRK11247 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD---EPLGALDALTRIEM 172 (257)
T ss_pred hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence 1234567778887763 3333 7999999999999999999999999 99999999887643
No 116
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.1e-29 Score=188.19 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+.. .......+++.++|++|++.+++..+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 104 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND--PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR 104 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc--CChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence 45789999999999999999999999999999999963311 11122345678999999977653211
Q ss_pred ---CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~LD~~~~~~l 175 (240)
T PRK09493 105 VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD---EPTSALDPELRHEV 175 (240)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 01 11234567778877763 3333 7999999999999999999999999 99999999988754
No 117
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.9e-30 Score=189.26 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=96.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ..... .++.++|++|++.+++..++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~----~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 101 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA----TDVPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRV 101 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CcCCc--cccceEEEecCCcccCCCCHHHHHhhhhhh
Confidence 457899999999999999999999999999999999632 22211 24569999999876532110
Q ss_pred -------Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -------DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -------~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..+.+.++++.+++. +..+ +|+||+|||+|||||+.+|+++++| ||++.+|....+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EP~~~LD~~~~~~l 175 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPFGALDAKVRKEL 175 (239)
T ss_pred ccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 1124566777777663 3333 7999999999999999999999999 99999999887744
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=189.93 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|+||++.+++..+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE----HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE----EhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 4578999999999999999999999999999999996 3333444556678999999976542110
Q ss_pred C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .......+.++++.+++. +..+ +||||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l 182 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD---EPTTWLDISHQIDL 182 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 0 112234567788887763 3443 7999999999999999999999999 99999999877644
No 119
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.7e-30 Score=196.64 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc----cCCceEEEcceeehhhhccccHHHH---H-hhcchhccccc--cccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS----LIGSNICCSNVFYLQAVHNSACRKL---T-KELCDVIEDYS--LVNFST- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~~---~-~~ig~V~Q~~~--l~~~~~- 70 (143)
++.++|+||||||||||+++|+|+++ |++|+|.++|.. +...+.+.+ + +.++||||++. +.+..+
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~----i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD----LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE----CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 46799999999999999999999997 489999999973 333333322 2 46999999974 332111
Q ss_pred -------------CC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 71 -------------LD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 71 -------------~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
.. .+..+.+.++++.+++. +.++ +||||+|||+|||||+.+|++|++| ||++.+|
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilD---EPts~LD 185 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIAD---EPTTALD 185 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCC
Confidence 11 23345678888888873 3344 7999999999999999999999999 9999999
Q ss_pred hhhhhhcc
Q 032336 129 AEVQEKYI 136 (143)
Q Consensus 129 ~~~~~~~~ 136 (143)
..++..++
T Consensus 186 ~~~~~~il 193 (326)
T PRK11022 186 VTIQAQII 193 (326)
T ss_pred HHHHHHHH
Confidence 99887543
No 120
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=1.3e-29 Score=183.05 Aligned_cols=126 Identities=8% Similarity=-0.033 Sum_probs=97.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .... ...++.++|++|++.+++..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL----AEQR-DEPHRNILYLGHLPGLKPELSALENLHFWAAI 100 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc----ccch-HHhhhheEEeccCcccccCCcHHHHHHHHHHH
Confidence 467899999999999999999999999999999999633 2222 2445679999998766532211
Q ss_pred ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.......+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|....+.+
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~l 166 (198)
T TIGR01189 101 HGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD---EPTTALDKAGVALL 166 (198)
T ss_pred cCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 111123567778777663 3333 7999999999999999999999999 99999998877643
No 121
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=9.8e-30 Score=213.06 Aligned_cols=128 Identities=10% Similarity=0.117 Sum_probs=103.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~ 73 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.- ... ..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~ 575 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF----SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKEN 575 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE----EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCC
Confidence 4689999999999999999999999999999999997 56667888899999999999998731 111 11
Q ss_pred hhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 QDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++..++ . ....+|||||||++||||+..+|++|++| |||+.+|..+.+++.
T Consensus 576 ~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD---E~Ts~LD~~te~~i~ 651 (708)
T TIGR01193 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD---ESTSNLDTITEKKIV 651 (708)
T ss_pred CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHHHH
Confidence 223445555555432 1 22337999999999999999999999999 999999998877554
No 122
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=5.1e-30 Score=181.74 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=89.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|++|++.+++. +. . +
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~-tv--~------~ 94 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA----DISQWDPNELGDHVGYLPQDDELFSG-SI--A------E 94 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE----EcccCCHHHHHhheEEECCCCccccC-cH--H------H
Confidence 4578999999999999999999999999999999996 33334445567789999999876531 11 1 1
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
-+ +||||+||++||||++.+|+++++| ||++.+|...+..+
T Consensus 95 ~l----------LS~G~~qrv~la~al~~~p~~lllD---EPt~~LD~~~~~~l 135 (173)
T cd03246 95 NI----------LSGGQRQRLGLARALYGNPRILVLD---EPNSHLDVEGERAL 135 (173)
T ss_pred HC----------cCHHHHHHHHHHHHHhcCCCEEEEE---CCccccCHHHHHHH
Confidence 11 8999999999999999999999999 99999999887743
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=2.1e-29 Score=185.57 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+.. ..++.++|+||++.+++..+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED----ITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----CCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 46799999999999999999999999999999999963 3323332 235679999999877642211
Q ss_pred --ChhhHHHHHHHHHHhh-h---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 --DIQDKESVAKLVKLID-K---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 --~~~~~~~~~~~l~~l~-~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.++ + .+..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD---EPt~~LD~~~~~~l 170 (230)
T TIGR03410 102 ALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD---EPTEGIQPSIIKDI 170 (230)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHHHHHHH
Confidence 1111233455666654 2 23444 7999999999999999999999999 99999999887744
No 124
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-29 Score=188.44 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------C----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------L---- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------~---- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|+||++.+++..+ .
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~ 103 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK----PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP 103 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCE----EhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence 4578999999999999999999999999999999996 3333344456677999999976542110 0
Q ss_pred --------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 --------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 --------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l 177 (255)
T PRK11231 104 WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD---EPTTYLDINHQVEL 177 (255)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 112234567777777653 3333 7999999999999999999999999 99999999888754
No 125
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=1.2e-29 Score=207.77 Aligned_cols=128 Identities=15% Similarity=0.151 Sum_probs=104.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC---h
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD---I 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~---~ 73 (143)
+..++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|++|++.+|.- .... .
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 433 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH----DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ 433 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE----eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCC
Confidence 5689999999999999999999999999999999997 55667778889999999999998731 1111 2
Q ss_pred hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++.+++. .+..+|||||||++||||++.+|+++++| ||++.+|..+.++++
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD---Epts~LD~~~~~~i~ 509 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD---EATSALDNESERLVQ 509 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHHH
Confidence 3345666667665431 12237999999999999999999999999 999999999988664
No 126
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.8e-29 Score=183.09 Aligned_cols=126 Identities=9% Similarity=0.010 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ .... ...++.++|++|++.+++..+.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~----~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 101 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI----RRQR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRL 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc----ccch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence 467899999999999999999999999999999999632 2221 3455679999998766532111
Q ss_pred -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +||||+||+++|||++.+|+++++| ||++.+|....+.+
T Consensus 102 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 168 (204)
T PRK13538 102 HGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD---EPFTAIDKQGVARL 168 (204)
T ss_pred cCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 112335667788887763 3333 7999999999999999999999999 99999999887744
No 127
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.96 E-value=1.5e-29 Score=184.55 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .... ..++.++|++|++.+++..+.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~----~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~ 97 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH----TGLA--PYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc----ccCC--hhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence 467899999999999999999999999999999999632 2221 245679999999876632110
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+....+.++++.+++. +..+ +|+||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~~ 167 (213)
T TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD---EPFSALDPLLREEM 167 (213)
T ss_pred cCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence 112234567788887763 3333 7999999999999999999999999 99999999887744
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=191.10 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|. ++.......+++.++|++|++. +++..+
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ----AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLE 110 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE----ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHH
Confidence 4678999999999999999999999999999999996 3333444566778999999974 331110
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +|+||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~l 181 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD---EATSMLDPDARQNL 181 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 111 1234566777777653 3333 7999999999999999999999999 99999999887744
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=188.50 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|++|++.+++..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE----EcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 4578999999999999999999999999999999996 3333344455677999999976532111
Q ss_pred C---ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHh------hcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L---DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAV------RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~---~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~------~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .......+.++++.+++. +..+ +||||+|||+|||||+ .+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD---EPt~~LD~~~~~~l 179 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD---EPTSALDLAHQHHV 179 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---CCcccCCHHHHHHH
Confidence 0 012234567788887763 3343 7999999999999999 499999999 99999999887643
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=191.05 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=97.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFS---------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~---------- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+...........+++.++|++|++ .++...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 112 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQ 112 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence 45789999999999999999999999999999999963321000122345667899999986 333210
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|...++.+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 184 (280)
T PRK13649 113 NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD---EPTAGLDPKGRKEL 184 (280)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0111 1223466777777663 2332 7999999999999999999999999 99999999887744
No 131
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=188.05 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=97.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|.. +...+...+++.++|+||++.+++..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 104 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD----IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA 104 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE----CCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence 457899999999999999999999974 69999999963 333344566778999999986542111
Q ss_pred ----C-----C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 ----L-----D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 ----~-----~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. . .+..+.+.++++.+++. +..+ +||||+|||++|||++.+|+++++| ||++.+|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EP~~~LD~~~ 181 (250)
T PRK14247 105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD---EPTANLDPEN 181 (250)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHH
Confidence 0 1 11234566777777652 2333 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++++
T Consensus 182 ~~~l 185 (250)
T PRK14247 182 TAKI 185 (250)
T ss_pred HHHH
Confidence 7744
No 132
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.96 E-value=1.9e-29 Score=187.79 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|..+.. ........++.++|+||++.+++ .+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~ 103 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD--KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIA 103 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc--cccchHHHHhheEEEecCcccCC-CCHHHHHH
Confidence 4679999999999999999999999998 9999999973321 01223455678999999987653 11
Q ss_pred --------CC-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 --------LD-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 --------~~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. .+..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~ 180 (247)
T TIGR00972 104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD---EPTSALDPIAT 180 (247)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 01 12234566777777653 2333 7999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 181 ~~l 183 (247)
T TIGR00972 181 GKI 183 (247)
T ss_pred HHH
Confidence 644
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=191.47 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=100.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccc--------c---
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVN--------F--- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~--------~--- 68 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+. ........+++.++|+||++. ++. +
T Consensus 32 Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~--~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 109 (283)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID--YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV 109 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC--CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence 4679999999999999999999999999999999997331 112234556778999999873 221 0
Q ss_pred -ccCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 69 -STLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 69 -~~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..... +..+.+.++++.+++. +... +||||+||++|||||+.+|++|++| ||++.+|...++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD---EPt~gLD~~~~~~l~ 181 (283)
T PRK13636 110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD---EPTAGLDPMGVSEIM 181 (283)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHH
Confidence 01111 2235677788888763 3333 7999999999999999999999999 999999998887543
No 134
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=2e-29 Score=187.74 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=98.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc-----ccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN-----SACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-----~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+.. ... .....+++.++|++|++.+++..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT-ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc-cccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 45789999999999999999999999999999999974321 000 112445678999999987653211
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... ...+.+.++++.+++. +... +||||+|||+||||++.+|+++++| ||++.+|....+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~ 184 (250)
T PRK11264 108 EGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD---EPTSALDPELVGEVL 184 (250)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHH
Confidence 011 1234566777777763 2333 7999999999999999999999999 999999998877443
No 135
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=1.5e-29 Score=185.14 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=96.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC--------Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL--------DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~--------~~ 73 (143)
+..++|+||||||||||+++|+|+.+|++|+|.++|.. +...+....++.++|++|++.+++. +. ..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~~~~ 104 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD----IRQLDPADLRRNIGYVPQDVTLFYG-TLRDNITLGAPL 104 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE----hHHCCHHHHHhhEEEeCCCCccccc-hHHHHhhcCCCC
Confidence 45789999999999999999999999999999999963 3333334456789999999876531 10 11
Q ss_pred hhHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 QDKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.++++.+++. +. ..+||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 179 (220)
T cd03245 105 ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD---EPTSAMDMNSEERL 179 (220)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 1223445566655432 11 247999999999999999999999999 99999999888744
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=190.78 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccc-ccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSL-VNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l-~~~~~--------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|.. +.... ...+++.++|++|++.. +...+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID----TGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----CCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 46799999999999999999999999999999999963 32222 34566789999998752 21100
Q ss_pred ----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++|+| ||++.+|...+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~gLD~~~~~~l 175 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD---EVTSMLDPDSGIAV 175 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 111 2234567778887763 3333 7999999999999999999999999 99999999887644
No 137
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=1.7e-29 Score=207.46 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=105.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.. ... ...
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 441 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ----PIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCcc
Confidence 4679999999999999999999999999999999997 56667788899999999999988731 111 122
Q ss_pred hHHHHHHHHHHhhhh---------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS---------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++.+++. ....+||||+||++||||++.+|+++++| ||++.+|..+.+.+.
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD---E~ts~lD~~t~~~i~ 515 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD---EPTEGLDAETERQIL 515 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 345667777776542 12337999999999999999999999999 999999999887554
No 138
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=1.6e-29 Score=205.66 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=103.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|.. ... ...
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~----~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 423 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV----PLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----ehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence 4679999999999999999999999999999999997 56667778899999999999988731 111 111
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++.+++. ....+|||||||+++|||++++|+++++| ||++.+|..+.+++.
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD---E~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD---EPTAHLDAETEALVT 498 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence 234556666654421 12337999999999999999999999999 999999999988654
No 139
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.5e-30 Score=181.94 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=89.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc--HHHHHhhcchhcccccccccccCChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA--CRKLTKELCDVIEDYSLVNFSTLDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~--~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~ 79 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +...+ ....++.++|++|++.++...+. .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~--~----- 94 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED----LTDLEDELPPLRRRIGMVFQDFALFPHLTV--L----- 94 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----ccccchhHHHHhhcEEEEecCCccCCCCCH--H-----
Confidence 46789999999999999999999999999999999963 32222 34566789999999876533221 1
Q ss_pred HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.. . +|+||+||+++|||++.+|+++++| ||++.+|...++.+.
T Consensus 95 -~~l~~---~----lS~G~~qr~~la~al~~~p~llilD---EP~~~LD~~~~~~l~ 140 (178)
T cd03229 95 -ENIAL---G----LSGGQQQRVALARALAMDPDVLLLD---EPTSALDPITRREVR 140 (178)
T ss_pred -Hheee---c----CCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHHHHHH
Confidence 11110 0 8999999999999999999999999 999999999887543
No 140
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=1.9e-29 Score=185.30 Aligned_cols=127 Identities=18% Similarity=0.085 Sum_probs=94.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---HHHHHhhcchhccccc--cccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---CRKLTKELCDVIEDYS--LVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~--l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+ ...+++.++|++|++. +++..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD----LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 46799999999999999999999999999999999963 32222 2345678999999973 221111
Q ss_pred -----C--Chh--hHHH-HHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -----L--DIQ--DKES-VAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -----~--~~~--~~~~-~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. ... .... +.++++.+++. +..+ +||||+|||+||||++.+|+++|+| ||++.+|...++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~ 183 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD---EPTSALDVSVQAQ 183 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec---CCCCCCCHHHHHH
Confidence 0 111 1111 23666776652 3333 7999999999999999999999999 9999999988774
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 184 l 184 (228)
T cd03257 184 I 184 (228)
T ss_pred H
Confidence 4
No 141
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=190.07 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=98.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS---------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~---------- 69 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|++|++. ++...
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~ 105 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP----ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPI 105 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE----CCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHH
Confidence 46789999999999999999999999999999999973 333344566778999999974 32100
Q ss_pred --cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... ...+.+.++++.+++. +..+ +||||+||++|||||+.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD---EPt~gLD~~~~~~l 176 (277)
T PRK13652 106 NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD---EPTAGLDPQGVKEL 176 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0111 1224567778887763 3333 7999999999999999999999999 99999999887754
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-29 Score=190.11 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|++|++. .+...+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 110 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT----ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe----cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence 45789999999999999999999999999999999963 333344556778999999973 221111
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +....+.++++.+++. +..+ +||||+||++|||||+.+|+++++| ||++.+|...++.+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP~~gLD~~~~~~l 181 (271)
T PRK13632 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD---ESTSMLDPKGKREI 181 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 111 1233467778877763 3333 7999999999999999999999999 99999999887643
No 143
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-29 Score=202.06 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=104.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------cccCCh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FSTLDI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~~~~~ 73 (143)
++++||+|+|||||||++|+|.+++. ++|+|+++|+ +++..+.+.+|+.||||||+..||. +...+.
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~----dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ----DIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe----eHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence 67899999999999999999999999 9999999997 6777888899999999999999983 122222
Q ss_pred hhHHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 74 QDKESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
.+ +.+.++.++.++ .+ +..+||||+|||++|||+..+|+++++| |||+.+|.++...+++
T Consensus 453 s~-eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D---EaTS~LD~~TE~~i~~ 528 (591)
T KOG0057|consen 453 SD-EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD---EATSALDSETEREILD 528 (591)
T ss_pred CH-HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec---CcccccchhhHHHHHH
Confidence 22 345555555543 12 2237999999999999999999999999 9999999988775543
No 144
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=1.8e-29 Score=189.82 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHHhhcchhccccc--cccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLTKELCDVIEDYS--LVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~~~ig~V~Q~~~--l~~~~~------ 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +...+. ..+++.++|++|++. +++..+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 37 GETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD----LYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----ccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 46789999999999999999999999999999999963 322222 235667999999863 321110
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
... ...+.+.++++.+++. +..+ +||||+|||+||||++.+|+++|+| ||++.+|...++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD---EPt~~LD~~~~~~ 188 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD---EAVSNLDMVLQAV 188 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 111 2234677788887763 2333 7999999999999999999999999 9999999987663
No 145
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-29 Score=205.60 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=98.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c--CChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T--LDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~--~~~~ 74 (143)
++.+|||||||+||||+.++|.++|.|++|+|.+||. ++.+.+.+.+|++||+|.|+|.||.-. . ....
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~----~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~ 569 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV----PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA 569 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe----ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence 4689999999999999999999999999999999997 778888999999999999999998311 1 1122
Q ss_pred hHHHHHHHHHHhh-------hhCC---------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 75 DKESVAKLVKLID-------KSNG---------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 75 ~~~~~~~~l~~l~-------~~~~---------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
..+.+..+.+..+ +.++ .-+|||||||++|||||..+|.+|+|| |+|+-||.+..
T Consensus 570 t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD---EATSALDaeSE 640 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD---EATSALDAESE 640 (716)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe---chhhhcchhhH
Confidence 2233444433322 1222 227999999999999999999999999 99999987643
No 146
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=186.46 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+.. ..++.++|++|++.+++..+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED----ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----CCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 46789999999999999999999999999999999963 3333332 34567999999987653111
Q ss_pred C----C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L----D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~----~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. . .+....+.++++.+++. +... +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 176 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD---EPFAGVDPISVIDI 176 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 0 1 12234567778877653 3333 7999999999999999999999999 99999999887643
No 147
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=2.3e-29 Score=207.09 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=102.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~ 74 (143)
+..++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|.. .... ..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 436 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT----DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDA 436 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE----EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 56677788899999999999998731 1111 11
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++.+++. +...+||||+||++||||++.+|+++++| ||++.+|..+.+++.
T Consensus 437 ~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD---Epts~LD~~t~~~i~ 511 (588)
T PRK13657 437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD---EATSALDVETEAKVK 511 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHH
Confidence 233455555554321 22347999999999999999999999999 999999999888654
No 148
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=1.9e-29 Score=211.42 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=104.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|.|+++|++|+|.++|. ++...+...++++++||+|++.+|.- ... ...
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~----~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~ 582 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV----PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT 582 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE----EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 56667788899999999999998731 111 112
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
+.+.+.++++.+++. .+..+|||||||++||||+.++|+++++| ||++.+|.++.+++.+
T Consensus 583 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD---EpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD---EATSALDAECEQLLQE 658 (711)
T ss_pred CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---ccccccCHHHHHHHHH
Confidence 234556666654321 12337999999999999999999999999 9999999988776654
No 149
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.2e-29 Score=182.20 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=97.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|.. +.. .....++.++|++|++.+++..++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~----~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~ 101 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS----IKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF 101 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCc----ccc-CHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence 46799999999999999999999999999999999963 322 2234567899999987765322110
Q ss_pred hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.++++.+++. +.. .+|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD---EP~~~LD~~~~~~l 166 (200)
T PRK13540 102 SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD---EPLVALDELSLLTI 166 (200)
T ss_pred CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence 01123567777777653 233 37999999999999999999999999 99999999887744
No 150
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.1e-29 Score=185.06 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=97.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~ 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +..... .++.++|+||++.+++..+ .
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 98 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCee----cCcCCh--hhccEEEEecccccccCCcHHHHHhccccc
Confidence 46789999999999999999999999999999999963 222221 2457999999987653211 0
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~~~~~~~ 168 (232)
T PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD---EPFSALDPALRQEM 168 (232)
T ss_pred ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 112344577788888763 3443 7999999999999999999999999 99999999887644
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=186.14 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh--hhccccHHHHHhhcchhcccccccccccC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ--AVHNSACRKLTKELCDVIEDYSLVNFSTL-------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+.. ..........++.++|++|++.+++..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~ 107 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAP 107 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHH
Confidence 46789999999999999999999999999999999963210 00111234556789999999876632111
Q ss_pred ------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+....+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EPt~~LD~~~~~~l 180 (242)
T PRK11124 108 CRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD---EPTAALDPEITAQI 180 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCcCCHHHHHHH
Confidence 1 11233466677777663 3333 7999999999999999999999999 99999999887643
No 152
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=2.8e-29 Score=188.99 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=97.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--ccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFS---------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~---------- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +........++.++|+||++. +++..
T Consensus 39 Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 114 (267)
T PRK15112 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP----LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL 114 (267)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence 46789999999999999999999999999999999963 222233344567999999864 22110
Q ss_pred ----cCCh-hhHHHHHHHHHHhhhh----CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 ----TLDI-QDKESVAKLVKLIDKS----NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 ----~~~~-~~~~~~~~~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +.. .+|+||+|||+||||++.+|+++||| ||++.+|....+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l 188 (267)
T PRK15112 115 RLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD---EALASLDMSMRSQL 188 (267)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc---CCcccCCHHHHHHH
Confidence 0111 2234567788888762 333 37999999999999999999999999 99999999887644
No 153
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=3.7e-29 Score=183.21 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~ 75 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|++|++.+++.. . .....
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~ 105 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV----DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYS 105 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE----EhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCC
Confidence 4578999999999999999999999999999999996 333344556678899999998765311 0 01111
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.++++.+++. ....+|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EP~~~LD~~~~~~l 178 (221)
T cd03244 106 DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD---EATASVDPETDALI 178 (221)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 23344555554331 12237999999999999999999999999 99999999887743
No 154
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-29 Score=184.46 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +...+.. ..++.++|++|++.+++..++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 106 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD----ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF 106 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe----cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence 46799999999999999999999999999999999963 3333333 345679999999876632110
Q ss_pred --C-hhhHHHHHHHHHHhh-h---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 --D-IQDKESVAKLVKLID-K---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 --~-~~~~~~~~~~l~~l~-~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.++ + .+... +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD---EPt~~LD~~~~~~l 176 (237)
T PRK11614 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD---EPSLGLAPIIIQQI 176 (237)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CccccCCHHHHHHH
Confidence 1 111234555566652 3 23333 7999999999999999999999999 99999999887643
No 155
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-29 Score=185.11 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=94.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-C-Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-L-DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~-~~~ 74 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|.. +...+...+++.++|++|++.++... . . ...
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~ 104 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID----IRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA 104 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEe----HHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCC
Confidence 45789999999999999999999999999999999963 33334455677899999998765310 0 0 011
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.++++.+++. ....+|+||+|||+|||||+.+|+++++| ||++.+|....+.+
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD---EP~~~LD~~~~~~l 178 (229)
T cd03254 105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD---EATSNIDTETEKLI 178 (229)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 112333333333210 11337999999999999999999999999 99999999887743
No 156
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=185.82 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS--------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~--------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|.. +........++.++|+||++.+|+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~ 103 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD----VKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAP 103 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe----cccCCHHHHhhhEEEEecCCccccccHHHHhhhHH
Confidence 46799999999999999999999974 689999999973 33333445667899999998776310
Q ss_pred cC-----C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 70 TL-----D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 70 ~~-----~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. . ....+.+.++++.+++. +... +|+||+|||++|||++.+|+++++| ||++.+|...+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~~LD~~~~~~ 180 (246)
T PRK14269 104 KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD---EPTSALDPISSGV 180 (246)
T ss_pred hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHH
Confidence 00 0 12233566777877762 2332 7999999999999999999999999 9999999987764
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 181 l 181 (246)
T PRK14269 181 I 181 (246)
T ss_pred H
Confidence 3
No 157
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=180.32 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=108.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--------------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--------------N 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--------------~ 67 (143)
+-.++|||||||||||||.+++++++.++|+|+++|. ++..++.++++++++.+-|+..+. |
T Consensus 27 g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~----~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP 102 (252)
T COG4604 27 GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL----ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP 102 (252)
T ss_pred CceeEEECCCCccHHHHHHHHHHhccccCceEEEeee----ecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc
Confidence 3468999999999999999999999999999999997 667788899999999999986532 2
Q ss_pred c--ccCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 68 F--STLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 68 ~--~~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+ .....++...+.++++.+++ .++|. +||||+||.-||+.+||+.+..||| ||+-+||-.-...+|
T Consensus 103 YSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD---EPLNNLDmkHsv~iM 175 (252)
T COG4604 103 YSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD---EPLNNLDMKHSVQIM 175 (252)
T ss_pred ccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec---CcccccchHHHHHHH
Confidence 2 22456888899999998865 57777 7999999999999999999999999 999999876554443
No 158
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-29 Score=193.60 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=97.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc----cCCceEEEcceeehhhhccccHHH---H-Hhhcchhcccccc--ccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS----LIGSNICCSNVFYLQAVHNSACRK---L-TKELCDVIEDYSL--VNFST- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~---~-~~~ig~V~Q~~~l--~~~~~- 70 (143)
++.++|+|+||||||||+++|+|+++ |++|+|.++|.. +.....+. . ++.++||||++.. .+..+
T Consensus 33 Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~----i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 33 GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID----LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE----CCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 46799999999999999999999986 589999999973 33333322 2 3469999999752 22111
Q ss_pred ------------C------C-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccc
Q 032336 71 ------------L------D-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFH 123 (143)
Q Consensus 71 ------------~------~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~ 123 (143)
. . .+..+.+.++++.+++. +.++ +||||+|||+|||||+.+|+++++| ||
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD---EP 185 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIAD---EP 185 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEe---CC
Confidence 0 0 12234677888888774 3444 7999999999999999999999999 99
Q ss_pred cchhhhhhhhhcc
Q 032336 124 LFQSLAEVQEKYI 136 (143)
Q Consensus 124 ~~~~~~~~~~~~~ 136 (143)
++.||..++..+.
T Consensus 186 ts~LD~~~~~~i~ 198 (330)
T PRK15093 186 TNAMEPTTQAQIF 198 (330)
T ss_pred CCcCCHHHHHHHH
Confidence 9999998887544
No 159
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=4e-29 Score=183.16 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+. ..........++.++|++|++.++...+.
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY-GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL 109 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH-hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999999997332 11111122456789999999876632110
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +....+.++++.+++. +..+ +|+||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD---EP~~~LD~~~~~~l 180 (220)
T TIGR02982 110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD---EPTAALDSKSGRDV 180 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCHHHHHHH
Confidence 11 1234567778887763 3333 7999999999999999999999999 99999999887643
No 160
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=178.87 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=88.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +.......+++.++|+||++.++.. + .. ++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~~~~~~~~~-t--~~-----e~ 95 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD----LRDLDLESLRKNIAYVPQDPFLFSG-T--IR-----EN 95 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE----hhhcCHHHHHhhEEEEcCCchhccc-h--HH-----HH
Confidence 45789999999999999999999999999999999963 3333445566789999999865421 1 11 11
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+ +|+||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 96 -l----------LS~G~~~rl~la~al~~~p~llllD---EP~~gLD~~~~~~l 135 (171)
T cd03228 96 -I----------LSGGQRQRIAIARALLRDPPILILD---EATSALDPETEALI 135 (171)
T ss_pred -h----------hCHHHHHHHHHHHHHhcCCCEEEEE---CCCcCCCHHHHHHH
Confidence 1 8999999999999999999999999 99999999887644
No 161
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=4.5e-29 Score=181.29 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=94.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +........++.++|++|++.+++. +. ...
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~ 108 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID----ISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEY 108 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE----hHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccCCC
Confidence 45789999999999999999999999999999999973 3333445567789999999876531 11 111
Q ss_pred hHHHHHHHHHHhhhh-CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKS-NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~-~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.++++ +. ....+|+||+|||++|||++.+|+++++| ||++.+|....+.+
T Consensus 109 ~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l 164 (207)
T cd03369 109 SDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD---EATASIDYATDALI 164 (207)
T ss_pred CHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHH
Confidence 1222333333 22 23347999999999999999999999999 99999999887643
No 162
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=3.8e-29 Score=178.32 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=88.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|++|
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~----~~~~~~~~~~~~~i~~~~q-------------------- 80 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK----DLASLSPKELARKIAYVPQ-------------------- 80 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----ECCcCCHHHHHHHHhHHHH--------------------
Confidence 4678999999999999999999999999999999996 3333444556677999998
Q ss_pred HHHHhhhh---C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKS---N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~---~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+++.+++. + ...+|+||+||+++|||++.+|+++++| ||++.+|....+.+
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~~ 136 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD---EPTSHLDIAHQIEL 136 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence 33333331 2 2337999999999999999999999999 99999998887754
No 163
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=186.10 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|++|++.+++..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 109 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD--PHVDVVELRRRVGMVFQKPNPFPKSIFENVAY 109 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc--cccCHHHHhhcEEEEecCCCCCcCcHHHHHHH
Confidence 45789999999999999999999964 589999999973321 1123345667899999998765310
Q ss_pred -----cC-C-hhhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TL-D-IQDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~-~-~~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.. . ....+.+.++++.+++. +.. .+||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD---EPt~~LD~~~~~ 186 (253)
T PRK14242 110 GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD---EPASALDPIATQ 186 (253)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence 00 1 11234566677776641 222 37999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 187 ~l 188 (253)
T PRK14242 187 KI 188 (253)
T ss_pred HH
Confidence 44
No 164
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=3.3e-29 Score=185.26 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=92.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|+||++.++... .. ...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~ 103 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH----DLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGM 103 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCe----ehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCC
Confidence 4578999999999999999999999999999999996 333334455677899999998765210 00 000
Q ss_pred hHHHHHHH---------HHHh--hh---hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKL---------VKLI--DK---SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~---------l~~l--~~---~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+. ++.+ ++ .+ ...+||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l 177 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD---EATSALDYESEHAI 177 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHH
Confidence 11122222 2222 11 11 2337999999999999999999999999 99999999887743
No 165
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=4.9e-29 Score=186.03 Aligned_cols=130 Identities=13% Similarity=0.157 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc----------cccHHHHHhhcchhccccccccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH----------NSACRKLTKELCDVIEDYSLVNFST- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----------~~~~~~~~~~ig~V~Q~~~l~~~~~- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+. ... ......+++.++|++|++.+++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY-HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 4679999999999999999999999999999999996332 110 1112345678999999987663211
Q ss_pred -------------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 -------------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 -------------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
... +..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~ 181 (252)
T TIGR03005 105 LDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD---EVTSALDPEL 181 (252)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHH
Confidence 111 1234567778877763 3333 7999999999999999999999999 9999999987
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 182 ~~~l 185 (252)
T TIGR03005 182 VGEV 185 (252)
T ss_pred HHHH
Confidence 7644
No 166
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-29 Score=200.21 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=105.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+|+||||||||+++|+|+++|++|+|.+||. ++.+.+...++++++||+|+|.+|+- ... ...
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~----~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI----DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCc----cccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 4579999999999999999999999999999999997 66777888999999999999998841 111 112
Q ss_pred hHHHHHHHHHHhhhh---------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS---------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.++.+.+++++.++. .+.-+||||+|||++|||+..+++++++| |||+.+|.++.+.++
T Consensus 423 s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD---EpTA~LD~etE~~i~ 496 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD---EPTAHLDAETEQIIL 496 (559)
T ss_pred CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec---CCccCCCHhHHHHHH
Confidence 345677777776542 12226999999999999999999999999 999999998877543
No 167
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-29 Score=189.54 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~------- 70 (143)
+..++|+||||||||||+++|+|+++|++ |+|.++|. ++........++.++|+||++. ++...+
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~----~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI----TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE----ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 46799999999999999999999999987 89999997 3333344456678999999974 221111
Q ss_pred ------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +|+||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllD---EPt~gLD~~~~~~l 182 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD---ESTSMLDPAGKEQI 182 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHH
Confidence 111 1224567778887763 3333 7999999999999999999999999 99999999888754
No 168
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=3.4e-29 Score=209.42 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=103.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.- .... ..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~----~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV----DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence 4689999999999999999999999999999999997 56677788899999999999998731 1111 12
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++.+++ . .+..+|||||||++||||+..+|+++++| |||+.+|..+.+++.
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD---E~Ts~LD~~te~~i~ 641 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD---EPTSAMDNRSEERFK 641 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 23455566655432 1 12337999999999999999999999999 999999998887654
No 169
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=3.8e-29 Score=193.34 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHH---HHH-hhcchhccccc--cccccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYS--LVNFST-- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~--l~~~~~-- 70 (143)
++.++|+|+||||||||+++|+|+++|+ +|+|.++|.. +...+.+ .++ +.|+||||++. +++..+
T Consensus 42 Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~----i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE----ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE----CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 4679999999999999999999999986 9999999974 3333333 233 47999999973 332111
Q ss_pred ------------CCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336 71 ------------LDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 71 ------------~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~ 129 (143)
... +..+.+.++++.+++. +.++ +||||+|||+|||||+.+|+++++| ||++.||.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD---EPts~LD~ 194 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD---EPTTALDV 194 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCH
Confidence 111 2235667778887663 2343 7999999999999999999999999 99999999
Q ss_pred hhhhhcc
Q 032336 130 EVQEKYI 136 (143)
Q Consensus 130 ~~~~~~~ 136 (143)
.++..++
T Consensus 195 ~~~~~i~ 201 (330)
T PRK09473 195 TVQAQIM 201 (330)
T ss_pred HHHHHHH
Confidence 9987543
No 170
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=7.6e-29 Score=185.44 Aligned_cols=127 Identities=16% Similarity=0.093 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|++|++.++...+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 102 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV----DLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIP 102 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE----EcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchh
Confidence 4678999999999999999999999999999999996 3333444556667999999975431100
Q ss_pred C-------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 L-------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~-------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ..+..+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|....+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 176 (256)
T TIGR03873 103 HRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD---EPTNHLDVRAQLET 176 (256)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHH
Confidence 0 012234567778877653 3333 7999999999999999999999999 99999999877644
No 171
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=4e-29 Score=204.92 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=103.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCCh--h
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLDI--Q 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~~--~ 74 (143)
+..+||+||||||||||+++|.|+++|++|+|.++|. ++...+...+|++|++|+|++.+|.- ..+.. .
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~----dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~a 430 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDA 430 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCE----ehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCC
Confidence 5689999999999999999999999999999999997 67778889999999999999998841 11111 1
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
..+.+.++++..+. . .+..+|||||||++||||+..+|++|+|| |||+.+|..+...+.+
T Consensus 431 t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD---EaTSalD~~tE~~I~~ 506 (567)
T COG1132 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD---EATSALDTETEALIQD 506 (567)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---ccccccCHHhHHHHHH
Confidence 22445555554421 1 12337999999999999999999999999 9999999988775543
No 172
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=3.2e-29 Score=170.73 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh-hhHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI-QDKESVA 80 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~-~~~~~~~ 80 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++........++.++|++|++.++...++.. ...+.++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~ 86 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGK----DISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE 86 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTE----EGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred CCEEEEEccCCCccccceeeecccccccccccccccc----ccccccccccccccccccccccccccccccccccccccc
Confidence 4578999999999999999999999999999999997 4444556678889999999977765443222 3345677
Q ss_pred HHHHHhhhh---CC------CcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336 81 KLVKLIDKS---NG------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125 (143)
Q Consensus 81 ~~l~~l~~~---~~------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~ 125 (143)
++++.+++. .. ..+|+||||||+||+|++.+|+++++| ||++
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD---EPt~ 137 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD---EPTN 137 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE---STTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe---CCCC
Confidence 888887652 12 337999999999999999999999999 8874
No 173
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.4e-29 Score=185.81 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=96.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++..++
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 107 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS--PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVA 107 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc--cccChHHHhhceeEEecCCccCCCCcHHHHHH
Confidence 457899999999999999999999987 49999999973320 012334566789999999876532110
Q ss_pred ----------C-hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 72 ----------D-IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 72 ----------~-~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. .+..+.+.++++.+++ .+... +||||+|||+||||++.+|+++++| ||++.+|...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~ 184 (253)
T PRK14267 108 IGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD---EPTANIDPVG 184 (253)
T ss_pred HHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHH
Confidence 0 1112345667777664 12233 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 185 ~~~l 188 (253)
T PRK14267 185 TAKI 188 (253)
T ss_pred HHHH
Confidence 7744
No 174
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-29 Score=188.88 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-cHHHHHhhcchhccccc--cccc--------c-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDYS--LVNF--------S- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~~--l~~~--------~- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +... ....+++.++|+||++. ++.. .
T Consensus 36 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~ 111 (280)
T PRK13633 36 GEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD----TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGP 111 (280)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe----ccccccHHHHhhheEEEecChhhhhccccHHHHHHhhH
Confidence 45799999999999999999999999999999999963 2222 23456778999999874 2210 0
Q ss_pred ---cCCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 ---TLDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 ---~~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l 183 (280)
T PRK13633 112 ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD---EPTAMLDPSGRREV 183 (280)
T ss_pred hhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0111 2234577788887763 3333 7999999999999999999999999 99999999988754
No 175
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=3.3e-29 Score=204.74 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=104.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---CChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST---LDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~---~~~~~~~~ 78 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|.... ....+.+.
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK----PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE----ECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence 4689999999999999999999999999999999997 4556677788899999999998874211 11223445
Q ss_pred HHHHHHHhhhh------C----CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 79 VAKLVKLIDKS------N----GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 79 ~~~~l~~l~~~------~----~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+.++++.+++. . +..+|||||||++||||++.+|+++++| ||++.+|..+.+++
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD---E~ts~LD~~~~~~i 488 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD---EWAADQDPHFRREF 488 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 67777776542 1 2358999999999999999999999999 99999999887754
No 176
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-29 Score=186.96 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=95.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ... ...++|++|++.+++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~-----~~~~~~v~q~~~~~~~~tv~e~l~~~~~~ 97 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV----EGP-----GAERGVVFQNEGLLPWRNVQDNVAFGLQL 97 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCC-----CCcEEEEeCCCccCCCCcHHHHHHhHHHH
Confidence 467999999999999999999999999999999999632 211 134899999977653211
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +||||+|||++||||+.+|+++++| ||++.+|...++.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~l 167 (255)
T PRK11248 98 AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD---EPFGALDAFTREQM 167 (255)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 11 11234567788887763 3333 7999999999999999999999999 99999999887744
No 177
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.96 E-value=2.9e-29 Score=193.65 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=94.6
Q ss_pred EECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------------Ch
Q 032336 7 VIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL-------------DI 73 (143)
Q Consensus 7 liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~-------------~~ 73 (143)
|+||||||||||+++|+|+++|++|+|.++|..+ ..... .++.++|+||++.+|+..++ ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i----~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV----TNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH
Confidence 6899999999999999999999999999999733 22222 35679999999887643221 11
Q ss_pred -hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 -QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 -~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD---EP~s~LD~~~~~~l 139 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD---EPLSALDKKLRDQM 139 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHH
Confidence 1234567778887763 4443 7999999999999999999999999 99999999887744
No 178
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.6e-29 Score=186.82 Aligned_cols=129 Identities=11% Similarity=0.011 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 116 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD--PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAF 116 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--ccCCHHHHhhceEEEccCCccchhhHHHHHhh
Confidence 45789999999999999999999987 689999999963310 0123445667899999998765310
Q ss_pred -----cCChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 -----TLDIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 -----~~~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+..+.+.++++.+++ .+... +|+||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~gLD~~~~~~l 193 (269)
T PRK14259 117 GARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD---EPCSALDPISTLKI 193 (269)
T ss_pred hhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence 0111123445566766653 23333 7999999999999999999999999 99999999887744
No 179
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=3.7e-29 Score=178.61 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=87.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---ccccccCChhhHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFSTLDIQDKE 77 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~~~~~~~~~ 77 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +.... ....++.++|++|++. +++..+ ..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t--~~e-- 97 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP----VTRRSPRDAIRAGIAYVPEDRKREGLVLDLS--VAE-- 97 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----CCccCHHHHHhCCeEEecCCcccCcccCCCc--HHH--
Confidence 45789999999999999999999999999999999963 33333 2345667999999853 332221 111
Q ss_pred HHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 78 SVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 78 ~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.... .+|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 98 ----~l~~~~-----~LS~G~~qrl~la~al~~~p~llllD---EP~~~LD~~~~~~l 143 (182)
T cd03215 98 ----NIALSS-----LLSGGNQQKVVLARWLARDPRVLILD---EPTRGVDVGAKAEI 143 (182)
T ss_pred ----HHHHHh-----hcCHHHHHHHHHHHHHccCCCEEEEC---CCCcCCCHHHHHHH
Confidence 111100 08999999999999999999999999 99999999887754
No 180
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=5.3e-29 Score=183.66 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=94.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-cccc-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-NFST----- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-~~~~----- 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+ ... ...++.++|++|++. .+ +..+
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~----~~~--~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL----LPL--SIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec----hhh--hhhhheeEEEecCchhhcCcccCHHHHH
Confidence 457899999999999999999999999 899999999632 221 222357999999974 22 1110
Q ss_pred ---------CChhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 ---------LDIQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ---------~~~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
......+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD---EPt~~LD~~~~~ 162 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD---EPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHH
Confidence 0112234567778877663 2233 7999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 163 ~l 164 (230)
T TIGR02770 163 RV 164 (230)
T ss_pred HH
Confidence 43
No 181
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=7.5e-29 Score=182.96 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ..... ..+|++|++.+++..+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI----TEPGP-----DRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CCCCh-----hheEEecCcccCCCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999632 22221 2479999987653211
Q ss_pred ----CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ----LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ----~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~l 153 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD---EPFGALDALTRGNL 153 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHHHHHH
Confidence 111 2233467778887763 3333 7999999999999999999999999 99999999888754
No 182
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6e-29 Score=188.07 Aligned_cols=128 Identities=11% Similarity=0.043 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+...+++.++|++|++. .+...+
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~----i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL----LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGME 108 (277)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE----CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHH
Confidence 45799999999999999999999999999999999963 333344556778999999974 221110
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD---EPt~~LD~~~~~~l~ 180 (277)
T PRK13642 109 NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD---ESTSMLDPTGRQEIM 180 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 111 1124566777777652 3333 7999999999999999999999999 999999999887553
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=3.5e-29 Score=178.13 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=89.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +... ...+++.++|++|++.+++ .+. .+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~----~~~~-~~~~~~~i~~~~q~~~~~~-~tv--------~~ 93 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP----VSDL-EKALSSLISVLNQRPYLFD-TTL--------RN 93 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE----HHHH-HHHHHhhEEEEccCCeeec-ccH--------HH
Confidence 46789999999999999999999999999999999963 2222 3346678999999887653 111 11
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
-+ ...+|+||+||++||||++.+|+++++| ||++.+|....+.+
T Consensus 94 ~i-------~~~LS~G~~qrv~laral~~~p~~lllD---EP~~~LD~~~~~~l 137 (178)
T cd03247 94 NL-------GRRFSGGERQRLALARILLQDAPIVLLD---EPTVGLDPITERQL 137 (178)
T ss_pred hh-------cccCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence 11 3457999999999999999999999999 99999999887644
No 184
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=8.9e-29 Score=183.39 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=96.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+++|+|++ +|++|+|.++|. ++...+.... +..++|++|++.+++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ----DLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCE----ecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 4579999999999999999999995 799999999996 3333333333 345899999987653210
Q ss_pred ---C---------Ch-hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 71 ---L---------DI-QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 ---~---------~~-~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
. .. +..+.+.++++.+++. +.. .+||||+|||+|||||+.+|+++++| ||++.+|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~ 178 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD---EIDSGLDID 178 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEec---CCcccCCHH
Confidence 0 00 1124566777777653 222 28999999999999999999999999 999999998
Q ss_pred hhhhc
Q 032336 131 VQEKY 135 (143)
Q Consensus 131 ~~~~~ 135 (143)
.++.+
T Consensus 179 ~~~~l 183 (243)
T TIGR01978 179 ALKIV 183 (243)
T ss_pred HHHHH
Confidence 87754
No 185
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=206.71 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=99.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--ccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~~--------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|+++|..+. .......+.+++.++||||++ .+++..+
T Consensus 350 Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID-TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC-cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 4579999999999999999999999999999999997332 111111233556799999996 3442111
Q ss_pred ----C-C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ----L-D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ----~-~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. . .+..+.+.++++.+++. +.++ +||||||||+|||||+.+|++||+| ||++.||...+..+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD---EPts~LD~~~~~~i~ 503 (623)
T PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD---EAVSALDVSIRGQII 503 (623)
T ss_pred HHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 1 1 12235677888888762 4444 7999999999999999999999999 999999999887543
No 186
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=7.6e-29 Score=201.21 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~~~--------- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|.. +...+....+ +.++||+|++.+++..++
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 112 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP----CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP 112 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE----CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence 45789999999999999999999999999999999963 3333333333 469999999876532211
Q ss_pred -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+..+.+.++++.+++. +..+ +||||||||+|||||+.+|++||+| ||++.+|...++.+
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD---EPt~~LD~~~~~~l 179 (510)
T PRK15439 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD---EPTASLTPAETERL 179 (510)
T ss_pred cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 112245677888888764 3333 7999999999999999999999999 99999999887744
No 187
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=8.7e-29 Score=181.88 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=96.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--cc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--ST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~--------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++ ...++.++|++|++.++.. .+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~~-----~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA----SP-----GKGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc----cc-----hHhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4679999999999999999999999999999999995 22 1235679999998764211 00
Q ss_pred ---------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EP~~~LD~~~~~~l 152 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD---EPFTGLDMPTQELL 152 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0112334577788887763 3333 7999999999999999999999999 99999999888754
No 188
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=7.2e-29 Score=185.67 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=100.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhh---------hccccHHHHHhhcchhccccccccccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQA---------VHNSACRKLTKELCDVIEDYSLVNFST-- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~---------~~~~~~~~~~~~ig~V~Q~~~l~~~~~-- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+... ........+++.++|++|++.+++..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~ 110 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 110 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHH
Confidence 467899999999999999999999999999999999633110 000112355678999999987653211
Q ss_pred ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.. .+..+.+.++++.+++. +... +||||+|||+|||||+.+|+++++| ||++.+|...
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~ 187 (257)
T PRK10619 111 ENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD---EPTSALDPEL 187 (257)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHH
Confidence 01 12234567788888763 2332 7999999999999999999999999 9999999988
Q ss_pred hhhcc
Q 032336 132 QEKYI 136 (143)
Q Consensus 132 ~~~~~ 136 (143)
++.+.
T Consensus 188 ~~~l~ 192 (257)
T PRK10619 188 VGEVL 192 (257)
T ss_pred HHHHH
Confidence 87543
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=201.92 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +...+.. ..++.++|++|++.+++..+
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE----VTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----CCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 46799999999999999999999999999999999963 2222222 23467999999976542110
Q ss_pred -------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||||||+|||||+.+|++||+| ||++.+|...+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 180 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD---EPTDALTDTETESL 180 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcCCCCHHHHHHH
Confidence 011 1234577888888764 3333 7999999999999999999999999 99999999887644
No 190
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-29 Score=187.08 Aligned_cols=129 Identities=13% Similarity=0.052 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc--------c--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF--------S-- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~--------~-- 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. ........+++.++|++|++. ++.. .
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~ 105 (275)
T PRK13639 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK--YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL 105 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc--cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence 4679999999999999999999999999999999996331 112233456778999999963 2210 0
Q ss_pred --cCC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... .+..+.+.++++.+++. +..+ +||||+||++||||++.+|+++++| ||++.+|...+..+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~gLD~~~~~~l 176 (275)
T PRK13639 106 NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD---EPTSGLDPMGASQI 176 (275)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 011 12234567778877763 3443 7999999999999999999999999 99999999888754
No 191
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=7.4e-29 Score=185.69 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=95.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh-hhccccHHH----HHhhcchhccccc--cccccc----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ-AVHNSACRK----LTKELCDVIEDYS--LVNFST---- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~----~~~~ig~V~Q~~~--l~~~~~---- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..... .+...+... .++.++|++|++. ++...+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 111 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGN 111 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHH
Confidence 46799999999999999999999999999999999962000 022222222 2456999999974 211100
Q ss_pred -------C---C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 -------L---D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 -------~---~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. . .+....+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++
T Consensus 112 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllD---EPt~~LD~~~~~ 188 (258)
T PRK11701 112 IGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMD---EPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHH
Confidence 0 0 11234556777777652 2333 7999999999999999999999999 999999998877
Q ss_pred hcc
Q 032336 134 KYI 136 (143)
Q Consensus 134 ~~~ 136 (143)
.+.
T Consensus 189 ~l~ 191 (258)
T PRK11701 189 RLL 191 (258)
T ss_pred HHH
Confidence 543
No 192
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.7e-29 Score=184.61 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=96.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++| ++|+|+++|..+.. .......+++.++|++|++.++...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~ 110 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS--NNFDILELRRKIGMVFQTPNPFLMSIYDNISY 110 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc--ccccHHHHhhceEEEeeccccccCcHHHHHHH
Confidence 467899999999999999999999987 48999999963211 1122345677899999998765210
Q ss_pred -----c-CCh-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----T-LDI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~-~~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. ... ...+.+.++++.+++ .+... +||||+|||+|||||+.+|+++++| ||++.+|....+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---EPt~~LD~~~~~ 187 (254)
T PRK14273 111 GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD---EPTSALDPISTG 187 (254)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcccCHHHHH
Confidence 0 011 123456666776654 23333 7999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 188 ~l 189 (254)
T PRK14273 188 KI 189 (254)
T ss_pred HH
Confidence 54
No 193
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-29 Score=185.50 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=97.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~ 116 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT--PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAF 116 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc--cccchHHHhcceEEEecCCccCcCcHHHHHhh
Confidence 46789999999999999999999986 589999999973311 1223445677899999998765310
Q ss_pred ------cCCh-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 ------TLDI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 ------~~~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.... +..+.+.++++.+++ .+.. .+||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~ 193 (260)
T PRK10744 117 GVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD---EPCSALDPISTG 193 (260)
T ss_pred hHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc---CCCccCCHHHHH
Confidence 0111 122456777777764 2333 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 194 ~l 195 (260)
T PRK10744 194 RI 195 (260)
T ss_pred HH
Confidence 44
No 194
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=6.9e-29 Score=212.00 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=99.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCChh--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLDIQ-- 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~~~-- 74 (143)
+..++|+|||||||||++++|.+++.|++|+|.++|. ++.....+.+|.+||.|+|+|.||.. ..+.++
T Consensus 379 G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~----di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE----DIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc----cchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 4679999999999999999999999999999999996 67778889999999999999988731 112221
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
..+.++++.+..+. . .+..+||||||||+|||||+.+|++|||| |||+-||.+...
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD---EaTSaLD~~se~ 526 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD---EATSALDAESER 526 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec---CcccccCHHHHH
Confidence 13344444433221 1 23338999999999999999999999999 999999987654
No 195
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=9e-29 Score=198.60 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=103.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~--------- 70 (143)
++.+||||+||||||||.|+|+|+.+|++|+|.++|.+ . ++.....+..++.+-+|||++.- .|..+
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~-~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L-DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c-ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 56899999999999999999999999999999999964 1 23333456677889999999863 22211
Q ss_pred -----C-ChhhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -----L-DIQDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -----~-~~~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ..+..+++.++++++++ .++|+ +||||||||+|||||+.+|+++++| ||++.||..+|...
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~D---Ep~SaLDvsvqa~V 468 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD---EPVSALDVSVQAQV 468 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEec---CCccccCHHHHHHH
Confidence 1 12334568888999876 35665 7999999999999999999999999 99999999887643
No 196
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.96 E-value=9e-29 Score=202.93 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=102.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|+||++.+|.. ... . ..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~----~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~ 441 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV----DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDA 441 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE----EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 55667778888999999999988731 111 1 11
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++.+++. .+..+||||+||+++|||+..+|+++++| ||++.+|..+.+.++
T Consensus 442 ~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD---Epts~lD~~~~~~i~ 516 (576)
T TIGR02204 442 TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD---EATSALDAESEQLVQ 516 (576)
T ss_pred CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe---CcccccCHHHHHHHH
Confidence 234555666654321 12237999999999999999999999999 999999999877554
No 197
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.3e-29 Score=188.27 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc-ccHHHHHhhcchhccccc--cccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN-SACRKLTKELCDVIEDYS--LVNF---------- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~ig~V~Q~~~--l~~~---------- 68 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+...... .....+++.++|++|++. ++..
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 116 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP 116 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHH
Confidence 457899999999999999999999999999999999633210011 123456678999999863 2211
Q ss_pred c--cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 69 S--TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 69 ~--~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .... +..+.+.++++.+++. +..+ +||||+|||+|||||+.+|++|++| ||++.+|...++.+
T Consensus 117 ~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD---EPt~~LD~~~~~~l 189 (289)
T PRK13645 117 VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD---EPTGGLDPKGEEDF 189 (289)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHH
Confidence 0 0111 1124456677777652 3333 7999999999999999999999999 99999999888744
No 198
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.1e-29 Score=201.28 Aligned_cols=128 Identities=10% Similarity=0.043 Sum_probs=99.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +...+... .++.++||||++.+++..+
T Consensus 31 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN----YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRH 106 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE----CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccc
Confidence 46789999999999999999999999999999999963 33333332 3456999999976542110
Q ss_pred -----CC------hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -----LD------IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -----~~------~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++|+| ||++.+|...+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD---EPt~~LD~~~~~~ 183 (510)
T PRK09700 107 LTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMD---EPTSSLTNKEVDY 183 (510)
T ss_pred cccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHH
Confidence 00 12234677788888764 3333 7999999999999999999999999 9999999988875
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
+.
T Consensus 184 l~ 185 (510)
T PRK09700 184 LF 185 (510)
T ss_pred HH
Confidence 43
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-28 Score=181.48 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=92.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +........++.++|++|++.+++.. .. ...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~ 103 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD----VRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGA 103 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEE----hhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCC
Confidence 45789999999999999999999999999999999963 33334455677899999998765311 00 000
Q ss_pred hHHHH---------HHHHHHh--hh---hCC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESV---------AKLVKLI--DK---SNG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~---------~~~l~~l--~~---~~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+ .+.++.+ ++ .+. ..+|+||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP~~~LD~~~~~~l 177 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD---EATSALDTESERLV 177 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 11111 2222222 11 122 237999999999999999999999999 99999999887744
No 200
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.95 E-value=1.5e-28 Score=184.34 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhh-ccccHHHHHhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAV-HNSACRKLTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~-~~~~~~~~~~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||+++|+|+++|+ +|+|.++|..+.... .......+++.++|+||++.+++..+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 109 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLI 109 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHh
Confidence 4679999999999999999999999886 499999997332100 01123445677999999987653111
Q ss_pred ---------------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 71 ---------------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 ---------------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
...+....+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~ 186 (262)
T PRK09984 110 GALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD---EPIASLDPE 186 (262)
T ss_pred hhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec---CccccCCHH
Confidence 0112234677788888763 3333 7999999999999999999999999 999999998
Q ss_pred hhhhc
Q 032336 131 VQEKY 135 (143)
Q Consensus 131 ~~~~~ 135 (143)
.++.+
T Consensus 187 ~~~~l 191 (262)
T PRK09984 187 SARIV 191 (262)
T ss_pred HHHHH
Confidence 87744
No 201
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-28 Score=181.99 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=93.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++.......+++.++|++|++.+++.. .. ...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~ 102 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ----DIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDA 102 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE----EhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCC
Confidence 4678999999999999999999999999999999996 333344555677899999998765310 00 000
Q ss_pred hHHHHHHHHHHhhh--------------hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDK--------------SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~--------------~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++..++ .. ...+|+||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD---EP~~~LD~~~~~~l 176 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD---EATSALDTHTEREI 176 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 11112222222111 01 2247999999999999999999999999 99999999887643
No 202
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=1.3e-28 Score=183.80 Aligned_cols=131 Identities=11% Similarity=-0.027 Sum_probs=94.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh-hhccccHHH----HHhhcchhcccccccccc------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ-AVHNSACRK----LTKELCDVIEDYSLVNFS------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~----~~~~ig~V~Q~~~l~~~~------~ 70 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|..... ++...+... +++.++|++|++.+.... .
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 108 (253)
T TIGR02323 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN 108 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHH
Confidence 46789999999999999999999999999999999852000 022222222 235699999986421100 0
Q ss_pred -------C----ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 -------L----DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 -------~----~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. ..+..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++
T Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD---EP~~~LD~~~~~ 185 (253)
T TIGR02323 109 IGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD---EPTGGLDVSVQA 185 (253)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHH
Confidence 0 011234566777777652 2233 7999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 186 ~l 187 (253)
T TIGR02323 186 RL 187 (253)
T ss_pred HH
Confidence 44
No 203
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.6e-28 Score=178.55 Aligned_cols=124 Identities=14% Similarity=0.043 Sum_probs=95.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~ 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. ... . ..++.++|++|+..+++..+ .
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~----~~~--~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 100 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD----IDD--P-DVAEACHYLGHRNAMKPALTVAENLEFWAAF 100 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe----Ccc--h-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHh
Confidence 46789999999999999999999999999999999963 211 1 15677999998766542211 1
Q ss_pred ChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +.. .+||||+||++||||++.+|+++++| ||++.+|....+.+
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 166 (207)
T PRK13539 101 LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD---EPTAALDAAAVALF 166 (207)
T ss_pred cCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 111223467788887763 333 27999999999999999999999999 99999999887744
No 204
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.95 E-value=1.2e-28 Score=201.71 Aligned_cols=127 Identities=9% Similarity=0.075 Sum_probs=104.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----CChhhHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----LDIQDKE 77 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----~~~~~~~ 77 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|.... ......+
T Consensus 368 G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 443 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA----AVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443 (555)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----ECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence 4689999999999999999999999999999999997 4556677788899999999998873211 1112345
Q ss_pred HHHHHHHHhhhh-------CC----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 78 SVAKLVKLIDKS-------NG----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 78 ~~~~~l~~l~~~-------~~----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.++++.+++. .+ ..+|||||||++||||++.+|+++++| ||++.+|..+.+.+
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD---E~ts~LD~~~~~~i 509 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD---EWAADQDPAFKRFF 509 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence 567778777642 22 237999999999999999999999999 99999999988755
No 205
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-28 Score=200.28 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHH-HHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
++.++|+||||||||||+|+|+|+++| ++|+|.++|.. +...+.. ..++.++||||++.+++..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE----LQASNIRDTERAGIAIIHQELALVKELSVLENIFLG 106 (506)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence 467999999999999999999999986 89999999963 3333333 23567999999976553111
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++|+| ||++.+|...+..++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~ 183 (506)
T PRK13549 107 NEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD---EPTASLTESETAVLL 183 (506)
T ss_pred ccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 011 2234677888888763 3333 7999999999999999999999999 999999998877443
No 206
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.3e-29 Score=176.45 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=99.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+|||||||||+||+|++++.|++|.|+++|. +... .+...|++||+++.+..++..++
T Consensus 28 Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~----d~~~-~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 28 GEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV----DTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred ceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec----cccc-ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996 3222 34567888999997766652211
Q ss_pred ---CChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+-..+++++.+++++ .++.+ +|-|++|||.|||||+++|+++++| ||++.+|.-...++
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD---EP~sGLDi~~~r~~ 172 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD---EPTSGLDIRTRRKF 172 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc---CCCCCccHHHHHHH
Confidence 123345667777777765 34444 7999999999999999999999999 99999998776543
No 207
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=183.73 Aligned_cols=128 Identities=11% Similarity=0.078 Sum_probs=96.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++ .+
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~ 114 (258)
T PRK14268 38 NSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE--PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVA 114 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc--ccchHHHHhhhEEEEecCCccCc-ccHHHHHH
Confidence 457999999999999999999999975 79999999963321 11122345677999999987653 11
Q ss_pred -------CCh-hhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 -------LDI-QDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 -------~~~-~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... +..+.+.++++.+++. +... +||||+|||+|||||+.+|+++++| ||++.+|...++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~ 191 (258)
T PRK14268 115 YGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD---EPTSALDPISTA 191 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcccCHHHHH
Confidence 111 1123456677776541 2232 7999999999999999999999999 999999998887
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 192 ~l 193 (258)
T PRK14268 192 RI 193 (258)
T ss_pred HH
Confidence 44
No 208
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-28 Score=184.57 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=97.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++| ++|+|+++|..+.. .......+++.++|++|++.+++..
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 122 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD--PRLDVVELRARVGMVFQKPNPFPKSIYENVAY 122 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc--cccchHHHhhceEEEecCCCCCCCcHHHHHHH
Confidence 467899999999999999999999975 89999999963311 1123345677899999998765310
Q ss_pred -----cC--Ch-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 70 -----TL--DI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 70 -----~~--~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. .. +..+.+.++++.+++. +.. .+||||+|||+|||||+.+|+++++| ||++.+|....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~ 199 (267)
T PRK14235 123 GPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD---EPCSALDPIAT 199 (267)
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHH
Confidence 00 11 1234566777777652 222 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 200 ~~l 202 (267)
T PRK14235 200 AKV 202 (267)
T ss_pred HHH
Confidence 644
No 209
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.5e-28 Score=179.52 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=96.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ .. ...++.++|++|++.+++..+.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i----~~---~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA----TR---GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL 109 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc----cc---hhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence 467899999999999999999999999999999999632 21 1234569999998776532111
Q ss_pred -ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +|+||+|||++|||++.+|+++++| ||++.+|....+.+
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 176 (214)
T PRK13543 110 HGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD---EPYANLDLEGITLV 176 (214)
T ss_pred cCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 111234556777777753 3333 7999999999999999999999999 99999999887754
No 210
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=1.7e-28 Score=198.16 Aligned_cols=127 Identities=11% Similarity=0.091 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--c------cccC--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--N------FSTL-- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--~------~~~~-- 71 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|. ++...+...+++.++|++|++.+. . ..+.
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS----HITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCc----ccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 4578999999999999999999999999999999885 232333444566799999986431 0 0111
Q ss_pred ----ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+..+++.++++.+++. +..+ +||||||||+||+||+.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 174 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD---EPFDGLDVASRQQL 174 (490)
T ss_pred hcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHH
Confidence 112245677888888763 3443 7999999999999999999999999 99999999888743
No 211
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=199.39 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccc---ccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDY---SLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~---~l~~~~~------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|+++|..+ ..... ...++.++||||++ .+++..+
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI----SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC----CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 457899999999999999999999999999999999632 22222 34556799999973 3331100
Q ss_pred --------C-------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 71 --------L-------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 71 --------~-------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
. . ..+...+.++++.+++. +..+ +||||||||+|||||+.+|++|++| ||++.+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~~LD 441 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD---EPTRGID 441 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEEC---CCCCCcC
Confidence 0 0 12234567888888773 3333 7999999999999999999999999 9999999
Q ss_pred hhhhhhc
Q 032336 129 AEVQEKY 135 (143)
Q Consensus 129 ~~~~~~~ 135 (143)
...++.+
T Consensus 442 ~~~~~~l 448 (510)
T PRK09700 442 VGAKAEI 448 (510)
T ss_pred HHHHHHH
Confidence 9888744
No 212
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=2.9e-28 Score=181.68 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=96.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++ .+|+|.++|. ++.......+++.++|+||++.++...+
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~ 96 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQ----PLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCE----ecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc
Confidence 46789999999999999999999986 5899999996 3333445556677999999875432110
Q ss_pred -CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh-------cCCcccccCCccccchhhhhhhhhc
Q 032336 71 -LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.+.++++.+++. +..+ +|+||+|||+||||++. +|+++++| ||++.+|...++.+
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD---EPt~~LD~~~~~~l 172 (248)
T PRK03695 97 KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD---EPMNSLDVAQQAAL 172 (248)
T ss_pred CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 12234677888888763 3333 79999999999999998 67999999 99999999887643
No 213
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=1.6e-28 Score=181.82 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=94.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-cccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|... .. .....++.++|++ |.+.+++..+
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~----~~-~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~ 121 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP----WK-RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----cc-cchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999999632 11 1234556799998 4444432111
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+.+.++++.+++. +..+ +||||+||+++|+|++.+|+++++| ||++.+|...++.+
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~~l 192 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD---EPTIGLDVVAQENI 192 (236)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 111 1223456667776653 3333 7999999999999999999999999 99999999887754
No 214
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-28 Score=183.03 Aligned_cols=129 Identities=10% Similarity=0.008 Sum_probs=96.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++..++
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 107 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG--PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc--cccChHHHhcceEEEccccccCCCCcHHHHHH
Confidence 467899999999999999999999974 69999999963310 112234566789999999776532110
Q ss_pred ---------C-hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ---------D-IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ---------~-~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
. .+..+.+.++++.+++ .+..+ +||||+|||+||||++.+|+++++| ||++.+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~ 184 (258)
T PRK14241 108 AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD---EPCSALDPIST 184 (258)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence 1 1123456667777754 12332 7999999999999999999999999 99999998877
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 185 ~~l 187 (258)
T PRK14241 185 LAI 187 (258)
T ss_pred HHH
Confidence 643
No 215
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=2e-28 Score=179.89 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TL 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~ 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++........++.++|++|++.+++.. ..
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~ 115 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK----PISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSC 115 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC----chHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCC
Confidence 4578999999999999999999999999999999996 333334445667899999998765210 00
Q ss_pred Chhh-H-----HHHHHHHHHh--hhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQD-K-----ESVAKLVKLI--DKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~-~-----~~~~~~l~~l--~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.... . ..+.++++.+ ++. +.. .+||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~~LD~~~~~~l 189 (226)
T cd03248 116 SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD---EATSALDAESEQQV 189 (226)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0000 0 1134455555 332 222 27999999999999999999999999 99999999887744
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=184.92 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=94.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---c-----cc----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV---N-----FS---- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~---~-----~~---- 69 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ .. ...++.++|+||++.+. . ..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i----~~---~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~ 105 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT----RQ---ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGR 105 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh----HH---hhccceEEEeccccccccCCCcchhhheeccc
Confidence 467899999999999999999999999999999999632 11 11224599999986531 0 00
Q ss_pred -c-------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 -T-------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 -~-------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ......+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~~LD~~~~~~l 181 (272)
T PRK15056 106 YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD---EPFTGVDVKTEARI 181 (272)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 0 0112234567778887763 3443 7999999999999999999999999 99999999887744
No 217
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=185.72 Aligned_cols=128 Identities=11% Similarity=0.069 Sum_probs=97.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|++|++.+++. ++
T Consensus 65 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~ 141 (285)
T PRK14254 65 NQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD--ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVA 141 (285)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc--cccchHhhhccEEEEecCCccCcC-CHHHHHH
Confidence 45789999999999999999999987 689999999963311 112234566789999999876531 10
Q ss_pred --------ChhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 72 --------DIQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 72 --------~~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.....+.+.++++.+++ .+.. .+||||||||+|||||+.+|+++|+| ||++.+|...++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD---EPts~LD~~~~~~ 218 (285)
T PRK14254 142 YGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD---EPASALDPVATSK 218 (285)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCCCCHHHHHH
Confidence 11123456677777654 1333 37999999999999999999999999 9999999988764
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 219 l 219 (285)
T PRK14254 219 I 219 (285)
T ss_pred H
Confidence 4
No 218
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=1.9e-28 Score=179.83 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=95.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---HH-Hhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---KL-TKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~~-~~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.....++...+.. .. ++.++|++|++.+++..+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 113 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAE 113 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHH
Confidence 4578999999999999999999999999999999741000012222222 22 356999999987653211
Q ss_pred ------CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... ...+.+.++++.+++. +..+ +|+||+||++|||||+.+|+++++| ||++.+|...++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~~~l 188 (224)
T TIGR02324 114 PLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLD---EPTASLDAANRQVV 188 (224)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 111 2234567778877653 2223 7999999999999999999999999 99999999888754
No 219
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=1.8e-28 Score=185.33 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=98.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c-cCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S-TLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~-~~~~~~ 75 (143)
+..++|+||||||||||+++|+|+++ ++|+|+++|. ++.......+++.++|+||++.+|+. . ......
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~----~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~ 104 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGV----SWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS 104 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Confidence 46799999999999999999999997 7899999996 34445566778899999999987731 1 111112
Q ss_pred HHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 76 KESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 76 ~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.+.+.++++.+++. .. ..+|+||+||+++|||++.+|+++++| ||++.+|..+.+.
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD---Epts~LD~~~~~~ 176 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---EPSAHLDPITYQV 176 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CccccCCHHHHHH
Confidence 34566677776642 11 238999999999999999999999999 9999999987763
No 220
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=2.5e-28 Score=204.27 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=102.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-C-hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-D-IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~-~~ 74 (143)
+..++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|.. ... . ..
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~----~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~ 558 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV----DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGA 558 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCC
Confidence 4689999999999999999999999999999999997 56667778899999999999988731 111 1 12
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++..++. ....+||||+||+++|||++++|+++++| ||++.+|..+.+++.
T Consensus 559 ~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD---Epts~LD~~~~~~i~ 633 (694)
T TIGR01846 559 PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD---EATSALDYESEALIM 633 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHHH
Confidence 234455555554320 22337999999999999999999999999 999999998877543
No 221
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=2.3e-28 Score=200.57 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=100.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++|++|++.+|.. .... ..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 416 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI----PLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE----EHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 45556677888999999999988731 1111 11
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++.+++ . ....+||||+||+++|||++.+|+++++| ||++.+|....+++.
T Consensus 417 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD---Epts~LD~~~~~~i~ 491 (569)
T PRK10789 417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD---DALSAVDGRTEHQIL 491 (569)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CccccCCHHHHHHHH
Confidence 23344555554332 1 12237999999999999999999999999 999999998887554
No 222
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=4.5e-28 Score=183.00 Aligned_cols=128 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC--------CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI--------GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~--------~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--- 70 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|. ++.......+++.++|+||++.++...+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 102 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE----PLAAIDAPRLARLRAVLPQAAQPAFAFSARE 102 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE----EcccCCHHHHHhhcEEecccCCCCCCCcHHH
Confidence 4578999999999999999999999998 999999996 3333344556667899999865321000
Q ss_pred ---------------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh---------cCCcccccCCc
Q 032336 71 ---------------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR---------NVDWDYYRYPS 121 (143)
Q Consensus 71 ---------------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~---------~p~~llld~~~ 121 (143)
...+..+.+.++++.+++. +..+ +||||+|||+|||||+. +|+++++|
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLD--- 179 (272)
T PRK13547 103 IVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLD--- 179 (272)
T ss_pred HHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEc---
Confidence 0112334567788887763 3333 79999999999999994 99999999
Q ss_pred cccchhhhhhhhhcc
Q 032336 122 FHLFQSLAEVQEKYI 136 (143)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (143)
||++.+|...++.+.
T Consensus 180 EPt~~LD~~~~~~l~ 194 (272)
T PRK13547 180 EPTAALDLAHQHRLL 194 (272)
T ss_pred CccccCCHHHHHHHH
Confidence 999999998887543
No 223
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=2.3e-28 Score=180.91 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=91.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +........++.++|++|++.+++.. .. ...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~ 104 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD----IRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA 104 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe----hhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCC
Confidence 46789999999999999999999999999999999963 33333445566799999997765310 00 000
Q ss_pred hHHHHHHHHHHhh-----------h---hC--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLID-----------K---SN--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~-----------~---~~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++..+ + .+ ...+||||+|||.||||++.+|+++++| ||++.+|...++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~gLD~~~~~~l 178 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD---EATSALDAESEKLV 178 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 0111222222111 1 11 1237999999999999999999999999 99999999887743
No 224
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.6e-28 Score=178.13 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=90.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~ 78 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|.. +.... ...++.++|++|+..+++..++.+.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~----~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~---- 103 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP----YKEFA-EKYPGEIIYVSEEDVHFPTLTVRET---- 103 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE----Cccch-hhhcceEEEEecccccCCCCcHHHH----
Confidence 46789999999999999999999999 899999999963 22222 2455679999998776543332111
Q ss_pred HHHHHHHhhhhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 79 VAKLVKLIDKSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 79 ~~~~l~~l~~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+..... .. .+..+ +|+||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 104 l~~~~~-~~-~~~~~~~LS~Ge~qrl~laral~~~p~llllD---EPt~~LD~~~~~~~ 157 (202)
T cd03233 104 LDFALR-CK-GNEFVRGISGGERKRVSIAEALVSRASVLCWD---NSTRGLDSSTALEI 157 (202)
T ss_pred Hhhhhh-hc-cccchhhCCHHHHHHHHHHHHHhhCCCEEEEc---CCCccCCHHHHHHH
Confidence 111010 11 23333 7999999999999999999999999 99999999887744
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.6e-28 Score=198.77 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccH---HHHH-hhcchhccccc--ccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSAC---RKLT-KELCDVIEDYS--LVNFS- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~---~~~~-~~ig~V~Q~~~--l~~~~- 69 (143)
+..++|+||||||||||+|+|+|+++| ++|+|.++|..+ ...+. ...+ +.++||||++. +++..
T Consensus 35 Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i----~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 35 GETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL----LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec----ccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 467999999999999999999999986 799999999733 22222 2233 46999999964 22110
Q ss_pred -------------cCCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchh
Q 032336 70 -------------TLDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQS 127 (143)
Q Consensus 70 -------------~~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~ 127 (143)
.... +..+.+.++++.+++. +..+ +||||||||+|||||+.+|++|++| ||++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD---EPt~~L 187 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD---EPTTAL 187 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCcc
Confidence 1111 2345678888888773 3333 7999999999999999999999999 999999
Q ss_pred hhhhhhhc
Q 032336 128 LAEVQEKY 135 (143)
Q Consensus 128 ~~~~~~~~ 135 (143)
|...++.+
T Consensus 188 D~~~~~~l 195 (529)
T PRK15134 188 DVSVQAQI 195 (529)
T ss_pred CHHHHHHH
Confidence 99887644
No 226
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-28 Score=179.82 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=97.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|..+ ..... .++.++|++|++.+++..+.
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 98 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI----TNLPP--EKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----CcCCh--hHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence 467899999999999999999999999999999999633 22222 24679999999876632111
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+.+.++++.+++. ++.+ +|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD~~~~~~l 168 (235)
T cd03299 99 RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD---EPFSALDVRTKEKL 168 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCcccCCHHHHHHH
Confidence 0 11233456677777653 3333 7999999999999999999999999 99999999888744
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-28 Score=197.37 Aligned_cols=127 Identities=12% Similarity=0.066 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +..... ..+++.++|+||++.+++..+
T Consensus 24 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 99 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE----IDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRY 99 (491)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEE----CCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccc
Confidence 45789999999999999999999999999999999963 322222 334567999999976542110
Q ss_pred -C-----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -L-----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -~-----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .. +..+.+.++++.+++. +..+ +||||||||+|||||+.+|++|++| ||++.+|...++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD---EPt~~LD~~~~~~l 173 (491)
T PRK10982 100 PTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD---EPTSSLTEKEVNHL 173 (491)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCCHHHHHHH
Confidence 0 11 1234567788887763 3333 7999999999999999999999999 99999999887754
No 228
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=2e-28 Score=172.14 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=82.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccccCChhhHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|.. +...+. ...++.++|++|
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~----~~~~~~~~~~~~~i~~~~q------------------- 82 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE----VSFASPRDARRAGIAMVYQ------------------- 82 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE----CCcCCHHHHHhcCeEEEEe-------------------
Confidence 46789999999999999999999999999999999963 333333 234567999988
Q ss_pred HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||+||+++|||++.+|+++++| ||++.+|...++++
T Consensus 83 -------------LS~G~~qrl~laral~~~p~illlD---EP~~~LD~~~~~~l 121 (163)
T cd03216 83 -------------LSVGERQMVEIARALARNARLLILD---EPTAALTPAEVERL 121 (163)
T ss_pred -------------cCHHHHHHHHHHHHHhcCCCEEEEE---CCCcCCCHHHHHHH
Confidence 8999999999999999999999999 99999999887754
No 229
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=3.1e-28 Score=178.16 Aligned_cols=127 Identities=9% Similarity=0.068 Sum_probs=91.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc----HHHHHhhcchhcccccccccc-----cC-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA----CRKLTKELCDVIEDYSLVNFS-----TL- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~~~~~ig~V~Q~~~l~~~~-----~~- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +...+ ....++.++|++|++.++... ..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~ 102 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKN----ESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFG 102 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcc----cccccccccchhhcceEEEEcCCCccccccHHHHHhhc
Confidence 35789999999999999999999999999999999863 22211 123456799999998765211 00
Q ss_pred ChhhHHHHHHHHHHhhhh--------------CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS--------------NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~--------------~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+...++++.+++. .. ..+|+||+|||+||||++.+|+++|+| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l 179 (218)
T cd03290 103 SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLD---DPFSALDIHLSDHL 179 (218)
T ss_pred CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCccccCHHHHHHH
Confidence 011112233444444321 12 237999999999999999999999999 99999999876643
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-28 Score=197.28 Aligned_cols=128 Identities=14% Similarity=0.056 Sum_probs=99.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+ ...+ ...+++.++||+|++.+++..+
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i----~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 30 GQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM----RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC----CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 457899999999999999999999999999999999633 2222 2345677999999976553111
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+.+.++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l~ 180 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD---EPTSSLSAREIEQLF 180 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 01 12234677788888763 3333 7999999999999999999999999 999999998877543
No 231
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=2.8e-28 Score=215.88 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=103.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----------------------------------------------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----------------------------------------------------- 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----------------------------------------------------- 28 (143)
+..+||+||||||||||+++|.|+++|
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 467999999999999999999999998
Q ss_pred -CCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hhhHHHHHHHHHHhhh-------hC---
Q 032336 29 -IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQDKESVAKLVKLIDK-------SN--- 90 (143)
Q Consensus 29 -~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~~~~~~~~~l~~l~~-------~~--- 90 (143)
++|+|.++|. ++...+.+.+|+.|+||+|++.||.- ..+. ....+.++++++..++ .+
T Consensus 1274 ~~~G~I~idG~----di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~Gyd 1349 (1466)
T PTZ00265 1274 KNSGKILLDGV----DICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYD 1349 (1466)
T ss_pred CCCCeEEECCE----EHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccC
Confidence 6999999997 66778888999999999999999831 1111 1223456666665432 11
Q ss_pred ------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 91 ------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 91 ------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.-+|||||||++|||||+.+|++|+|| |||+.||.++.+.+.
T Consensus 1350 T~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD---EaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265 1350 TNVGPYGKSLSGGQKQRIAIARALLREPKILLLD---EATSSLDSNSEKLIE 1398 (1466)
T ss_pred CccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence 2237999999999999999999999999 999999998876543
No 232
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=2.4e-28 Score=179.26 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=95.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.. +... . ++.++|+||++.+++..+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~----~~~~---~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~ 97 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP----WTRK---D-LHKIGSLIESPPLYENLTARENLKVHTTL 97 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe----cccc---c-cccEEEEcCCCCccccCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999963 2211 1 2469999999876532211
Q ss_pred ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+...+.++++.+++. +..+ +|+||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD---EP~~~LD~~~~~~l 163 (223)
T TIGR03740 98 LGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD---EPTNGLDPIGIQEL 163 (223)
T ss_pred cCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccCCCHHHHHHH
Confidence 011234567778877763 3333 7999999999999999999999999 99999999887744
No 233
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.9e-28 Score=182.20 Aligned_cols=129 Identities=15% Similarity=0.076 Sum_probs=95.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~- 70 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|++|++.+++.. .
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 124 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD--SNINVVNLRREIGMVFQKPNPFPKSIYNNITH 124 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc--ccccHHHHhccEEEEecCCccCcccHHHHHHH
Confidence 45789999999999999999999864 689999999973321 1122334567899999998765310 0
Q ss_pred ---C-C----hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 ---L-D----IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ---~-~----~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. . ....+.+.++++.+++ .+... +||||+||++|||||+.+|+++|+| ||++.+|...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~~~ 201 (268)
T PRK14248 125 ALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD---EPASALDPISNA 201 (268)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc---CCCcccCHHHHH
Confidence 0 0 0112345556665543 22333 7999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 202 ~l 203 (268)
T PRK14248 202 KI 203 (268)
T ss_pred HH
Confidence 44
No 234
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=4.9e-28 Score=197.73 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CCh-h
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDI-Q 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~-~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|+.. . ... .
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 419 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGA----DLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENA 419 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----ehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCC
Confidence 4679999999999999999999999999999999997 455566677889999999999887311 0 111 1
Q ss_pred hHHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.+.+.++++..++ . ....+||||+||+++|||+..+|+++++| ||++.+|....+++.
T Consensus 420 ~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD---Epts~LD~~~~~~i~ 494 (544)
T TIGR01842 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD---EPNSNLDEEGEQALA 494 (544)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCccccCHHHHHHHH
Confidence 22333334433221 1 12237999999999999999999999999 999999998877554
No 235
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=3.5e-28 Score=181.64 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=91.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------CC-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------LD- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------~~- 72 (143)
+..++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++.+++... ..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---------------~~i~~v~q~~~~~~~l~~~~~~~~~~~~ 94 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------------LRIGYVPQKLYLDTTLPLTVNRFLRLRP 94 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc---------------cCEEEeccccccccccChhHHHHHhccc
Confidence 4679999999999999999999999999999988652 24899999876543211 00
Q ss_pred hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 95 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l 159 (251)
T PRK09544 95 GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD---EPTQGVDVNGQVAL 159 (251)
T ss_pred cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 11124566777777653 3333 7999999999999999999999999 99999999887754
No 236
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.3e-28 Score=179.83 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=95.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC---ccc--CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF---LSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~---~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+ ++| ++|+|.++|..+.. ........++.++|+||++.++.. +.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~-tv~~nl~ 105 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD--KGVQVDELRKNVGMVFQRPNPFPK-SIFENVA 105 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc--ccccHHHHhhheEEEecCCccCcc-cHHHHHH
Confidence 467999999999999999999997 454 58999999973321 111234566789999999876531 10
Q ss_pred --------C-h-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 --------D-I-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 --------~-~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
. . .....+.++++.+++. +.. .+||||+|||+|||||+.+|+++++| ||++.+|...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~ 182 (250)
T PRK14245 106 YGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD---EPASALDPIST 182 (250)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 0 1 1223466777777642 222 37999999999999999999999999 99999999888
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 183 ~~l 185 (250)
T PRK14245 183 AKV 185 (250)
T ss_pred HHH
Confidence 754
No 237
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.6e-28 Score=181.24 Aligned_cols=129 Identities=9% Similarity=0.001 Sum_probs=94.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~- 70 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. ........++.++|++|++.+++.. .
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 113 (264)
T PRK14243 36 NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA--PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAY 113 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc--cccChHHHhhhEEEEccCCccccccHHHHHHh
Confidence 46799999999999999999999976 479999999963311 1123345667899999997765310 0
Q ss_pred ------CChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+..+.+.++++.+++ .+... +||||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l 190 (264)
T PRK14243 114 GARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD---EPCSALDPISTLRI 190 (264)
T ss_pred hhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 011122344455555543 22232 7999999999999999999999999 99999999888744
No 238
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.95 E-value=7.2e-28 Score=177.14 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=94.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
++.++|+||||||||||+++|+|+++ |++|+|.++|..+ . ....++.++|+||++.+++..+.
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~----~---~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR----K---PDQFQKCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC----C---hHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence 46789999999999999999999999 9999999999632 2 23456779999999876532110
Q ss_pred ------C--h--hhHHHHHH-HHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ------D--I--QDKESVAK-LVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ------~--~--~~~~~~~~-~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. . .....+.+ .++.+++. +..+ +|+||+|||++|||++.+|+++++| ||++.+|...+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD---EP~~gLD~~~~~~~ 182 (226)
T cd03234 106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD---EPTSGLDSFTALNL 182 (226)
T ss_pred HHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe---CCCcCCCHHHHHHH
Confidence 0 0 11112333 56665542 3333 7999999999999999999999999 99999998877644
No 239
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=4.8e-28 Score=181.01 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=94.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-cccc-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-NFST----- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-~~~~----- 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|+++|..+ ... ...++.++||+|++. .+ +..+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i----~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~ 102 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV----APC--ALRGRKIATIMQNPRSAFNPLHTMHTHA 102 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec----ccc--ccccceEEEEecCCccccCccccHHHHH
Confidence 457999999999999999999999999 999999999632 211 122356999999974 22 1110
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ....+.+.++++.+++. +..+ +||||+|||+|||||+.+|++|++| ||++.+|...++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD---EPt~~LD~~~~~~l 179 (254)
T PRK10418 103 RETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD---EPTTDLDVVAQARI 179 (254)
T ss_pred HHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence 01 11234567778887753 2333 7999999999999999999999999 99999999876643
No 240
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=5.6e-28 Score=182.02 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~--------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+. .........+++.++|++|++. +++..+
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~ 116 (268)
T PRK10419 38 GETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA-KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL 116 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc-ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999996321 1111122345678999999973 221110
Q ss_pred -----CCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -----LDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -----~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +....+.++++.+++. +... +|+||+||++|||||+.+|+++|+| ||++.+|...++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD---EPt~~LD~~~~~~~ 190 (268)
T PRK10419 117 RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD---EAVSNLDLVLQAGV 190 (268)
T ss_pred HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHHHHH
Confidence 011 1223567778777652 2333 7999999999999999999999999 99999999877643
No 241
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.3e-28 Score=179.79 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=94.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|+||++.++...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~ 106 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD--PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAF 106 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc--chhhHHHhhhhEEEEecCCccCcccHHHHHHH
Confidence 457899999999999999999999874 89999999963211 1112234567899999998765310
Q ss_pred -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... . ...+.+.++++.+++ .+.. .+|+||+||++||||++.+|+++++| ||++.+|...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD---EP~~~LD~~~~~ 183 (250)
T PRK14262 107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD---EPTSALDPIATQ 183 (250)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe---CCccccCHHHHH
Confidence 000 1 112335556666554 2223 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 184 ~l 185 (250)
T PRK14262 184 RI 185 (250)
T ss_pred HH
Confidence 43
No 242
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=179.66 Aligned_cols=129 Identities=15% Similarity=0.092 Sum_probs=95.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. ........++.++|++|++.++...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~ 107 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG--SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAY 107 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc--ccchHHHhhccEEEEecCCccCCCcHHHHHHH
Confidence 45789999999999999999999997 479999999973211 1122344567799999998765310
Q ss_pred -----cCC-hh-hHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-IQ-DKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~~-~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... .+ ....+.++++.+++. +... +||||+||++||||++.+|+++++| ||++.+|...++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD---EP~~~LD~~~~~ 184 (251)
T PRK14251 108 GLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD---EPTSALDPISSS 184 (251)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCCccCCHHHHH
Confidence 000 11 123456667766651 2333 7999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 185 ~l 186 (251)
T PRK14251 185 EI 186 (251)
T ss_pred HH
Confidence 43
No 243
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.95 E-value=5.7e-28 Score=198.86 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~--~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|... ... ..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 436 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI----DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGA 436 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE----EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999996 455566777889999999999877311 111 11
Q ss_pred hHHHHHHHHHHhhh----------------hCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK----------------SNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~----------------~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++..++ .....+|||||||++|||||+.+|+++++| ||++.+|..+.+++.
T Consensus 437 ~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD---Epts~LD~~~~~~i~ 511 (585)
T TIGR01192 437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD---EATSALDVETEARVK 511 (585)
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHHH
Confidence 12233333333211 112337999999999999999999999999 999999998877553
No 244
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.3e-28 Score=180.39 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=95.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ | ++|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 115 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK--GKVDLVELRKNIGMVFQKGNPFPQSIFDNVAY 115 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc--cccCHHHHhhceEEEecCCcccccCHHHHHHh
Confidence 45789999999999999999999987 3 58999999973321 1123345667899999998765310
Q ss_pred --c-C---C-hhhHHHHHHHHHHhhhh-------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 --T-L---D-IQDKESVAKLVKLIDKS-------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 --~-~---~-~~~~~~~~~~l~~l~~~-------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. . . .+..+.+.++++.+++. +... +||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~~ 192 (259)
T PRK14274 116 GPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD---EPTSALDPVSTR 192 (259)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHH
Confidence 0 0 1 11123455667766542 2222 7999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 193 ~l 194 (259)
T PRK14274 193 KI 194 (259)
T ss_pred HH
Confidence 44
No 245
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=196.10 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=97.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccc---ccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDY---SLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~---~l~~~~~------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ...+. ..+++.++||+|++ .+++..+
T Consensus 278 Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV----VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEEC----CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 467899999999999999999999999999999999633 22222 23556799999985 2321100
Q ss_pred ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.. .+..+.+.++++.+++. ++.+ +||||||||+||||++.+|+++|+| ||++.+|...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLD---EPt~~LD~~~ 430 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILD---EPTRGVDVGA 430 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCCCHhH
Confidence 01 12234577888888763 3333 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 431 ~~~l 434 (501)
T PRK10762 431 KKEI 434 (501)
T ss_pred HHHH
Confidence 7744
No 246
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.5e-28 Score=179.36 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=95.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
++.++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~ 106 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK--SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY 106 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--cccchHHHhccEEEEecCCccCcccHHHHHHH
Confidence 457899999999999999999999763 68999999973321 11233456678999999987653100
Q ss_pred ------C-C-hhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 ------L-D-IQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ------~-~-~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. . .+..+.+.++++.+++ .+.. .+||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~ 183 (250)
T PRK14240 107 GPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD---EPTSALDPISTL 183 (250)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence 0 0 1123445566666543 1333 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
..
T Consensus 184 ~l 185 (250)
T PRK14240 184 KI 185 (250)
T ss_pred HH
Confidence 43
No 247
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=5.1e-28 Score=214.97 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=104.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~ 75 (143)
++++||+||||||||||+++|.|+++|++|+|.++|. ++...+...+|+++++|||++.+|.- ..+ ....
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~----di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s 1337 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC----DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCE----EhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC
Confidence 5789999999999999999999999999999999997 66777888999999999999998831 111 1223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++++.+++. .+.-+|||||||++||||+.++|++|+|| |||+.+|.++...+.
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD---EATSaLD~~Te~~Iq 1411 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD---EATASVDVRTDSLIQ 1411 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHHH
Confidence 44566777665431 12237999999999999999999999999 999999998876543
No 248
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.2e-28 Score=179.33 Aligned_cols=129 Identities=13% Similarity=0.063 Sum_probs=95.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 107 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS--PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAF 107 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc--cccChHHhhceEEEEecCCccCcCcHHHHHhh
Confidence 4578999999999999999999999987 6999999963311 1123345677899999998765320
Q ss_pred -----cCC-h-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-I-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... . ...+.+.++++.+++ .+... +|+||+|||+|||||+.+|+++++| ||++.+|...++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~ 184 (251)
T PRK14249 108 GPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMD---EPCSALDPVSTM 184 (251)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence 000 1 112334555555543 22333 7999999999999999999999999 999999988877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 185 ~l 186 (251)
T PRK14249 185 RI 186 (251)
T ss_pred HH
Confidence 43
No 249
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=5.6e-28 Score=179.72 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=94.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+++|+|++ +|++|+|.++|. ++...+.... ++.++|++|++.+++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~----~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 102 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK----DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 102 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCC----ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHh
Confidence 4578999999999999999999995 699999999996 3333333333 356999999976432100
Q ss_pred ------CCh-------hhHHHHHHHHHHhhhh----CC---CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 71 ------LDI-------QDKESVAKLVKLIDKS----NG---YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 ------~~~-------~~~~~~~~~l~~l~~~----~~---~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
... +..+.+.++++.+++. +. ..+||||+|||+||||++++|+++++| ||++.+|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD---EPt~~LD~~ 179 (248)
T PRK09580 103 LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD---ESDSGLDID 179 (248)
T ss_pred hhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHH
Confidence 000 0123445566665552 22 248999999999999999999999999 999999998
Q ss_pred hhhhcc
Q 032336 131 VQEKYI 136 (143)
Q Consensus 131 ~~~~~~ 136 (143)
.++.+.
T Consensus 180 ~~~~l~ 185 (248)
T PRK09580 180 ALKIVA 185 (248)
T ss_pred HHHHHH
Confidence 877543
No 250
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.1e-28 Score=200.90 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh------hhccccH---HHHH-hhcchhcccc--cccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ------AVHNSAC---RKLT-KELCDVIEDY--SLVNFS 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~~~~---~~~~-~~ig~V~Q~~--~l~~~~ 69 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+.. .+..... ..++ +.|+||+|++ .+++..
T Consensus 42 Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~ 121 (623)
T PRK10261 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF 121 (623)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC
Confidence 46799999999999999999999999999999998853210 1111121 2233 4699999987 343211
Q ss_pred c--------------CCh-hhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336 70 T--------------LDI-QDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 70 ~--------------~~~-~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
+ ... +..+++.++++.+++. +.++ +||||||||+|||||+.+|++||+| |||+.
T Consensus 122 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllD---EPt~~ 198 (623)
T PRK10261 122 TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD---EPTTA 198 (623)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEe---CCCCc
Confidence 1 111 2235677888888873 3444 7999999999999999999999999 99999
Q ss_pred hhhhhhhhc
Q 032336 127 SLAEVQEKY 135 (143)
Q Consensus 127 ~~~~~~~~~ 135 (143)
||...+..+
T Consensus 199 LD~~~~~~l 207 (623)
T PRK10261 199 LDVTIQAQI 207 (623)
T ss_pred cCHHHHHHH
Confidence 999987754
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=4.5e-28 Score=174.70 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=89.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~ 79 (143)
++.++|+||||||||||+++|+|++ +|++|+|.++|..+ .. ...++.++|++|++.+++..+.. ++ +
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~----~~---~~~~~~i~~~~q~~~~~~~~t~~-~~---i 103 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL----DK---RSFRKIIGYVPQDDILHPTLTVR-ET---L 103 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC----ch---HhhhheEEEccCcccCCCCCcHH-HH---H
Confidence 4578999999999999999999999 99999999999632 21 24567799999998765433221 11 1
Q ss_pred HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.- ...+ ..+|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 104 ~~-~~~~-----~~LS~G~~qrv~laral~~~p~illlD---EP~~~LD~~~~~~l 150 (194)
T cd03213 104 MF-AAKL-----RGLSGGERKRVSIALELVSNPSLLFLD---EPTSGLDSSSALQV 150 (194)
T ss_pred HH-HHHh-----ccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 10 0011 168999999999999999999999999 99999999887754
No 252
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=8.7e-28 Score=205.30 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=101.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~~--~~ 74 (143)
+.++||||||||||||++.+|-++|.|++|.|.+||. ++.+.+.+.+|+++|.|.|+|.||.. ..+. .-
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~----dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~v 1091 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV----DIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEV 1091 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc----ccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCC
Confidence 5789999999999999999999999999999999996 77889999999999999999999832 1111 12
Q ss_pred hHHHHHHHHHHhhh-------hCCC---------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 75 DKESVAKLVKLIDK-------SNGY---------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~~~~---------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
..+.+.++++..+. .++| -+|||||||++||||+..+|++|||| |.|+-||-+..
T Consensus 1092 s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD---EATSALDseSE 1162 (1228)
T KOG0055|consen 1092 SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD---EATSALDSESE 1162 (1228)
T ss_pred CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee---ccchhhhhhhH
Confidence 33455556555432 2222 27999999999999999999999999 99999987643
No 253
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=9.4e-28 Score=179.72 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~ 75 (143)
+..++|+|+||||||||+++|+|+++|++|+|.++|. ++...+....++.++|++|++.++... ... ...
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~----~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~ 122 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI----DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCT 122 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE----EhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCC
Confidence 4578999999999999999999999999999999996 333344456678899999998765311 011 001
Q ss_pred HHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.++++.+++ . ....+|+||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD~~~~~~l 195 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD---EATASIDMATENIL 195 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence 1223333333221 1 11237999999999999999999999999 99999999887644
No 254
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=178.60 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=96.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+.+| ++|+|.++|..+.. ........++.++|+||++.+++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~ 107 (251)
T PRK14270 30 NKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD--KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAY 107 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc--ccccHHHHHhheEEEecCCCcCCCcHHHHHHh
Confidence 467899999999999999999999875 78999999973321 1122345567899999998765310
Q ss_pred -----cC-Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TL-DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~-~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.. .. +....+.++++.+++ .+.. .+|+||+|||+||||++.+|+++++| ||++.+|...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~ 184 (251)
T PRK14270 108 GPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD---EPTSALDPISTL 184 (251)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence 00 11 112345667777653 2222 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 185 ~l 186 (251)
T PRK14270 185 KI 186 (251)
T ss_pred HH
Confidence 43
No 255
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.9e-28 Score=177.34 Aligned_cols=125 Identities=19% Similarity=0.160 Sum_probs=96.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|..+ ..... .++.++|++|++.++...+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~----~~~~~--~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~ 99 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI----TNLPP--HKRPVNTVFQNYALFPHLTVFENIAFGLRL 99 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc----CcCCh--hhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence 467999999999999999999999999999999999633 22221 24679999999876632111
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ...+.+.++++.+++. +..+ +|+||+|||+||||++.+|+++++| ||++.+|...++.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~gLD~~~~~~l 169 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD---EPLGALDLKLRKDM 169 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 1233556677777663 3333 7999999999999999999999999 99999999888754
No 256
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=7.4e-28 Score=173.56 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=92.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|. ++.... ++.++|++|++.++...+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~----~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 97 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC----NINNIA----KPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc----ccChhh----hhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999996 222211 24589999986543221110
Q ss_pred hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
....+.+.++++.+++. +... +|+||+||+++|||++.+|+++++| ||++.+|...++.
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD---EP~~~LD~~~~~~ 161 (195)
T PRK13541 98 YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD---EVETNLSKENRDL 161 (195)
T ss_pred cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 01223556667776652 3333 7999999999999999999999999 9999999888764
No 257
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=178.51 Aligned_cols=129 Identities=17% Similarity=0.092 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--cc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
++.++|+||||||||||+++|+|+. +| ++|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 108 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS--PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVY 108 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC--cccchHhhhhcEEEEecCCccCcCcHHHHHHH
Confidence 4679999999999999999999985 36 58999999963311 0112334567899999998765310
Q ss_pred -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... . ...+.+.++++.+++ .+.. .+|+||+|||+||||++.+|+++++| ||++.+|....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~~ 185 (252)
T PRK14239 109 GLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD---EPTSALDPISAG 185 (252)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHH
Confidence 001 1 112345556666653 2233 37999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 186 ~l 187 (252)
T PRK14239 186 KI 187 (252)
T ss_pred HH
Confidence 54
No 258
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=7.5e-28 Score=214.67 Aligned_cols=128 Identities=11% Similarity=0.055 Sum_probs=105.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~ 75 (143)
++++||+|+||||||||+++|.|+++|++|+|.++|. ++...+...+|+++++|||++.+|.- .. .....
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~----dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t 1340 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC----DISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCE----ecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCC
Confidence 5789999999999999999999999999999999997 66778889999999999999998831 11 11223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++++.+++. .+.-+|||||||++|||||..+|++|+|| |||+.+|.++...+.
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD---EATSaLD~~Te~~Iq 1414 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD---EATAAVDVRTDALIQ 1414 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCHHHHHHHH
Confidence 45567777765431 12237999999999999999999999999 999999998876543
No 259
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.8e-28 Score=195.63 Aligned_cols=128 Identities=6% Similarity=0.028 Sum_probs=98.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---cccccc------C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFST------L 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~~------~ 71 (143)
+..++|+||||||||||+|+|+|+++|++|+|+++|+.+ .... ....++.++|++|++. +++..+ .
T Consensus 279 Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~----~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI----DIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC----CCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 467999999999999999999999999999999999632 2222 2345567999999863 332110 0
Q ss_pred -------------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 72 -------------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 72 -------------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. ....+.+.++++.+++. +..+ +||||||||+||||++.+|++||+| |||+.+|...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLD---EPt~~LD~~~ 431 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLD---EPTRGIDVGA 431 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEc---CCCCCCCHhH
Confidence 0 11234567788888762 3333 7999999999999999999999999 9999999998
Q ss_pred hhhcc
Q 032336 132 QEKYI 136 (143)
Q Consensus 132 ~~~~~ 136 (143)
++.++
T Consensus 432 ~~~l~ 436 (501)
T PRK11288 432 KHEIY 436 (501)
T ss_pred HHHHH
Confidence 87554
No 260
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=178.64 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=96.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++ | ++|+|.++|..+.. .......+++.++|+||++.+++..+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 107 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD--RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI 107 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc--ccCChHHhhccEEEEecCCCCCCcCcHHHHHH
Confidence 45789999999999999999999986 4 68999999973311 11223356678999999987653211
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
... +..+.+.++++.+++. +.. .+|+||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~gLD~~~~ 184 (252)
T PRK14256 108 AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD---EPASALDPIST 184 (252)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHH
Confidence 011 1124466677776642 222 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 185 ~~l 187 (252)
T PRK14256 185 LKI 187 (252)
T ss_pred HHH
Confidence 643
No 261
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=180.06 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=95.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|+||++.+++..
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~ 123 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR--KEINVYEMRKHIGMVFQRPNPFAKSIYENITF 123 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc--ccCChHHHhcceEEEecCCccccccHHHHHHh
Confidence 45789999999999999999999986 589999999963311 1122345677899999998765310
Q ss_pred ---c--C-Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 ---T--L-DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 ---~--~-~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. . .. +..+.+.++++.+++ .+.. .+|+||+||++||||++.+|+++++| ||++.+|...++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~~LD~~~~~ 200 (267)
T PRK14237 124 ALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD---EPASALDPISTM 200 (267)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence 0 0 11 112345566666654 1222 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 201 ~l 202 (267)
T PRK14237 201 QL 202 (267)
T ss_pred HH
Confidence 44
No 262
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=179.66 Aligned_cols=130 Identities=9% Similarity=-0.020 Sum_probs=97.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------ 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|+||++.++....
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 111 (261)
T PRK14263 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG--KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAF 111 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc--cccchHhhhhceEEEecCCccccccHHHHHHH
Confidence 467999999999999999999999986 79999999973310 11122345677999999987652110
Q ss_pred ------CChhhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 ------LDIQDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ------~~~~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+..+.+.++++.+++. +.. .+|+||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPtsgLD~~~~~~l 188 (261)
T PRK14263 112 GLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD---EPCSALDPIATRRV 188 (261)
T ss_pred HHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHHHHH
Confidence 0112234566777776642 122 37999999999999999999999999 99999999887754
Q ss_pred c
Q 032336 136 I 136 (143)
Q Consensus 136 ~ 136 (143)
.
T Consensus 189 ~ 189 (261)
T PRK14263 189 E 189 (261)
T ss_pred H
Confidence 3
No 263
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=7.3e-28 Score=195.78 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=97.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc-ceeehhhhcccc---HHHHHhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS-NVFYLQAVHNSA---CRKLTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~-g~~~~~~~~~~~---~~~~~~~ig~V~Q~~~l~~~~~------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++ |.... ++.... ...+++.++|+||++.+++..+
T Consensus 310 Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~-~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 388 (520)
T TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWV-DMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE 388 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccc-cccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHH
Confidence 45789999999999999999999999999999995 52100 111111 1234567999999977653211
Q ss_pred -----CCh-hhHHHHHHHHHHhhhh--------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -----LDI-QDKESVAKLVKLIDKS--------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -----~~~-~~~~~~~~~l~~l~~~--------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
... ...+.+.++++.+++. +.++ +||||||||+|||||+.+|++||+| ||++.+|...++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD---EPt~~LD~~~~~~ 465 (520)
T TIGR03269 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD---EPTGTMDPITKVD 465 (520)
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 111 1234567788888773 2333 7999999999999999999999999 9999999988875
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
+.
T Consensus 466 l~ 467 (520)
T TIGR03269 466 VT 467 (520)
T ss_pred HH
Confidence 44
No 264
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=178.92 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=96.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+|+||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++ .+.
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~ 109 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD--PRININRLRRQIGMVFQRPNPFP-MSIYENVA 109 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc--cccchHhhhhheEEEecccccCC-ccHHHHHH
Confidence 467999999999999999999999985 48999999963311 11233456678999999987663 110
Q ss_pred ---------C-hhhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ---------D-IQDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ---------~-~~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
. .+..+.+.++++.+++ .+.. .+|+||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt~~LD~~~~ 186 (259)
T PRK14260 110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD---EPCSALDPIAT 186 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence 1 1122345566666653 2233 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 187 ~~l 189 (259)
T PRK14260 187 MKV 189 (259)
T ss_pred HHH
Confidence 744
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1e-27 Score=194.61 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH-HHHhhcchhcccc---ccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR-KLTKELCDVIEDY---SLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~V~Q~~---~l~~~~~------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +...+.. ..++.++|+||++ .+++..+
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE----INALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE----CCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 45789999999999999999999999999999999963 3223332 2445799999974 2332110
Q ss_pred -------C---ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -------L---DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -------~---~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. .....+.++++++.+++. +..+ +||||||||+||||++.+|++||+| ||++.+|...++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD---EPt~gLD~~~~~~ 441 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD---EPTRGVDVSARND 441 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC---CCCcCcChhHHHH
Confidence 0 111234567888888763 3333 7999999999999999999999999 9999999988874
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 442 l 442 (510)
T PRK15439 442 I 442 (510)
T ss_pred H
Confidence 4
No 266
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=179.93 Aligned_cols=128 Identities=12% Similarity=0.031 Sum_probs=94.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
++.++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|+||++.+++. ++
T Consensus 46 Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~ 122 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD--SQINSVKLRRQVGMVFQRPNPFPK-SIYENIA 122 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc--ccchhHHHhhcEEEEccCCccccc-cHHHHHH
Confidence 467899999999999999999999863 68999999963211 112223456789999999876531 10
Q ss_pred --------ChhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 72 --------DIQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 72 --------~~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.....+.+.++++.+++ .+..+ +||||+|||+|||||+.+|+++|+| ||++.+|...++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---EPt~~LD~~~~~~ 199 (274)
T PRK14265 123 FAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD---EPCSALDPISTRQ 199 (274)
T ss_pred hHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHH
Confidence 01112234455555543 23333 7999999999999999999999999 9999999988874
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 200 l 200 (274)
T PRK14265 200 V 200 (274)
T ss_pred H
Confidence 4
No 267
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=181.37 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+.+ |++|+|.++|..+.. .......+++.++|++|++.+++..
T Consensus 65 Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 142 (286)
T PRK14275 65 KYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG--KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAY 142 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh--cccchHHhhhcEEEECCCCCCCccCHHHHHHh
Confidence 46789999999999999999999864 499999999963211 0112234567899999998765310
Q ss_pred -----cCC-h-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-I-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... . ...+.+.++++.+++ .+... +||||+|||+|||||+.+|+++++| ||++.+|...++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---EPt~gLD~~~~~ 219 (286)
T PRK14275 143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD---EPTSALDPKATA 219 (286)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHH
Confidence 011 1 112345566666653 12332 7999999999999999999999999 999999998877
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 220 ~l 221 (286)
T PRK14275 220 KI 221 (286)
T ss_pred HH
Confidence 54
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=178.15 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=95.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+.+ |++|+|.++|..+. . .......+++.++|+||++.+++..
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~-~-~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~ 108 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY-S-VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAY 108 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH-h-cccchHHHhhhEEEEecCcccccCCHHHHHHH
Confidence 45789999999999999999999986 47999999996321 1 1112234567899999998765310
Q ss_pred -----cC--C-hhhHHHHHHHHHHhhhhC-------CC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 70 -----TL--D-IQDKESVAKLVKLIDKSN-------GY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 70 -----~~--~-~~~~~~~~~~l~~l~~~~-------~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. . .+..+.+.++++.+++.. .. .+||||+|||+||||++.+|+++++| ||++.+|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~ 185 (251)
T PRK14244 109 GPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD---EPCSALDPVAT 185 (251)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 00 0 112234566777776521 22 27999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 186 ~~l 188 (251)
T PRK14244 186 NVI 188 (251)
T ss_pred HHH
Confidence 744
No 269
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.4e-28 Score=179.17 Aligned_cols=115 Identities=13% Similarity=0.022 Sum_probs=88.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++..+...+..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------TVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence 4578999999999999999999999999999998872 378888876532111110
Q ss_pred -hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 -IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 -~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.++++.+++. +..+ +||||+|||+||+||+.+|+++++| ||++.||...++.+
T Consensus 89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD---EPt~~LD~~~~~~l 154 (246)
T cd03237 89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLD---EPSAYLDVEQRLMA 154 (246)
T ss_pred ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHH
Confidence 01112345677777653 3333 7999999999999999999999999 99999999887743
No 270
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=1.3e-27 Score=176.93 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=97.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|..+ .... ..++.++|+||++.+++..+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~----~~~~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 99 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA----TRVH--ARDRKIGFVFQHYALFKHLTVRDNIAFGLEI 99 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc----CcCC--hhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence 457899999999999999999999999999999999632 2222 235679999999876632110
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ....+.+.++++.+++. +.. .+|+||+||++||||++.+|+++++| ||++.+|...++.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~~LD~~~~~~~ 169 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD---EPFGALDAKVRKEL 169 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 1 11234556777777653 333 37999999999999999999999999 99999999888754
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=1.5e-27 Score=193.19 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=97.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|.. +...+... .++.++||||++.+++..+
T Consensus 27 Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 102 (500)
T TIGR02633 27 GECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP----LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG 102 (500)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhh
Confidence 467999999999999999999999987 79999999963 33333332 3467999999976542110
Q ss_pred ---------CC-hhhHHHHHHHHHHhhhhC----CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 ---------LD-IQDKESVAKLVKLIDKSN----GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ---------~~-~~~~~~~~~~l~~l~~~~----~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. .+..+.+.++++.+++.. ..+ +||||||||+|||||+.+|+++++| ||++.+|....+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD---EPt~~LD~~~~~~ 179 (500)
T TIGR02633 103 NEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD---EPSSSLTEKETEI 179 (500)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHH
Confidence 01 122345777888887642 222 7999999999999999999999999 9999999988775
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 180 l 180 (500)
T TIGR02633 180 L 180 (500)
T ss_pred H
Confidence 4
No 272
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-27 Score=176.77 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=94.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+. .......+++.++|+||++.+++..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~ 105 (249)
T PRK14253 29 RQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY---GNIDVADLRIKVGMVFQKPNPFPMSIYENVAY 105 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc---cccchHHHHhheeEEecCCCcCcccHHHHHHh
Confidence 457899999999999999999999986 5999999996321 1223445677899999998765310
Q ss_pred -----cCC-h-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLD-I-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~-~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
... . ...+.+.++++.+++ .+.. .+||||+|||+||||++.+|+++++| ||++.+|...++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~ 182 (249)
T PRK14253 106 GLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD---EPTSALDPIATH 182 (249)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHHH
Confidence 000 1 112334555655543 1222 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 183 ~l 184 (249)
T PRK14253 183 KI 184 (249)
T ss_pred HH
Confidence 43
No 273
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=176.64 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=93.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|..+.. .......+++.++|++|++.+++..+.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~ 107 (252)
T PRK14272 30 GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG--PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV 107 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc--CccCHHHhhceeEEEeccCccCcCCCHHHHHH
Confidence 3578999999999999999999999874 8999999963311 112233556779999999876532110
Q ss_pred ---------Ch-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ---------DI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ---------~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. +..+.+.++++.+++ .+..+ +||||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~ 184 (252)
T PRK14272 108 AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD---EPTSALDPAST 184 (252)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 01 112233444444432 12333 7999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 185 ~~l 187 (252)
T PRK14272 185 ARI 187 (252)
T ss_pred HHH
Confidence 744
No 274
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=189.21 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc------ccCC-hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF------STLD-IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~------~~~~-~~ 74 (143)
+..++||||||||||||.|+|.|..+|.+|.|++||. ++..|+.+.+.++|||+||+..||+- -.+. +.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga----~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA----DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccCCCcEEecch----hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 5689999999999999999999999999999999996 77889999999999999999999831 1112 23
Q ss_pred hHHHHHHHHHHhh-------hhC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 75 DKESVAKLVKLID-------KSN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 75 ~~~~~~~~l~~l~-------~~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
+.+.+.++.+..+ +.+ ...+|||||||+++|||+-.+|.+++|| ||-++||.+
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLD---EPNsNLD~~ 506 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD---EPNSNLDSE 506 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEec---CCCCCcchh
Confidence 3344444433322 122 2237999999999999999999999999 999999864
No 275
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=2e-27 Score=192.46 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=97.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccc-cHHHHHhhcchhcccc---cccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDY---SLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~---~l~~~~------- 69 (143)
+..++|+||||||||||||+|+|+++| ++|+|.++|..+ ... ....+++.++||+|++ .+++..
T Consensus 286 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV----DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC----CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 467999999999999999999999985 899999999633 211 2234567899999995 233210
Q ss_pred --c---C------C-hhhHHHHHHHHHHhhhh----CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 70 --T---L------D-IQDKESVAKLVKLIDKS----NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 70 --~---~------~-~~~~~~~~~~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. . . ....+.+.++++.+++. +.. .+||||||||+||||++.+|++|++| ||++.+|...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD---EPt~~LD~~~ 438 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD---EPTRGVDVGA 438 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCcCHhH
Confidence 0 0 1 11234577888888774 223 27999999999999999999999999 9999999998
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 439 ~~~l 442 (500)
T TIGR02633 439 KYEI 442 (500)
T ss_pred HHHH
Confidence 8754
No 276
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-27 Score=179.50 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=95.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccc-cHHHHHhhcchhcccccccccc-----c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDYSLVNFS-----T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~~l~~~~-----~ 70 (143)
++.++|+||||||||||+++|+|+++| ++|+|.++|..+ ... ....+++.++|++|++.+|+.. .
T Consensus 47 Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i----~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~ 122 (276)
T PRK14271 47 RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI----FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVL 122 (276)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc----cccchhHHHhhheEEeccCCccCCccHHHHHH
Confidence 467999999999999999999999985 699999999632 222 2235667899999998765310 0
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
... +....+.++++.+++. +.. .+||||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD---EPt~~LD~~~~ 199 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD---EPTSALDPTTT 199 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHH
Confidence 011 1122345566666552 222 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+++
T Consensus 200 ~~l 202 (276)
T PRK14271 200 EKI 202 (276)
T ss_pred HHH
Confidence 744
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-27 Score=171.86 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=88.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~ 79 (143)
+..++|+||||||||||+++|+|+. +|++|+|.++|.. +. ..+++.++|++|++.+++..+.. +... .
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~----~~----~~~~~~i~~~~q~~~~~~~~tv~-~~l~-~ 102 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP----LD----KNFQRSTGYVEQQDVHSPNLTVR-EALR-F 102 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe----hH----HHhhhceEEecccCccccCCcHH-HHHH-H
Confidence 4578999999999999999999986 4899999999963 22 34566799999988765432221 1111 0
Q ss_pred HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
...+ . .+||||+|||++|||++.+|+++++| ||++.+|...++.+.
T Consensus 103 ~~~~---~-----~LSgGe~qrv~la~al~~~p~vlllD---EP~~~LD~~~~~~l~ 148 (192)
T cd03232 103 SALL---R-----GLSVEQRKRLTIGVELAAKPSILFLD---EPTSGLDSQAAYNIV 148 (192)
T ss_pred HHHH---h-----cCCHHHhHHHHHHHHHhcCCcEEEEe---CCCcCCCHHHHHHHH
Confidence 0001 1 78999999999999999999999999 999999998887543
No 278
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-27 Score=178.61 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=94.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+|+||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|+||++.++...
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~ 127 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD--KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTY 127 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc--ccccHHHHhhhEEEEecCCccccccHHHHHHH
Confidence 46799999999999999999999987 699999999963321 1123345667899999998765310
Q ss_pred -----cCChh--hHHHHHHHHHHhh----h---hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -----TLDIQ--DKESVAKLVKLID----K---SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -----~~~~~--~~~~~~~~l~~l~----~---~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
....+ ....+.++++.++ + .+.. .+||||+|||+|||||+.+|+++++| ||++.+|....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD---EPt~~LD~~~~~ 204 (271)
T PRK14238 128 GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD---EPTSALDPISTL 204 (271)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCcCCHHHHH
Confidence 00011 1223344454432 1 1233 37999999999999999999999999 999999998877
Q ss_pred hcc
Q 032336 134 KYI 136 (143)
Q Consensus 134 ~~~ 136 (143)
.+.
T Consensus 205 ~l~ 207 (271)
T PRK14238 205 KVE 207 (271)
T ss_pred HHH
Confidence 543
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=1.1e-27 Score=173.42 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=88.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccCChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTLDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~~~~~~~~ 78 (143)
+..++|+||||||||||+++|+|+ ++|++|+|.++|. ++........ +..++|+||++.+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~----~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-------- 93 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE----DITDLPPEERARLGIFLAFQYPPEIPGVK-------- 93 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCE----ECCcCCHHHHhhCcEEEeecChhhccCcc--------
Confidence 457899999999999999999999 5799999999996 3333333333 445999999987653221
Q ss_pred HHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 79 VAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 79 ~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+.+.+. .....+|+||+|||++|||++.+|+++++| ||++.+|...++.+
T Consensus 94 ~~~~l~----~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~LD~~~~~~l 143 (200)
T cd03217 94 NADFLR----YVNEGFSGGEKKRNEILQLLLLEPDLAILD---EPDSGLDIDALRLV 143 (200)
T ss_pred HHHHHh----hccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHHHHH
Confidence 112221 112358999999999999999999999999 99999999887644
No 280
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-27 Score=176.45 Aligned_cols=129 Identities=15% Similarity=0.051 Sum_probs=95.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+.+ |++|+|.++|..+.. .......+++.++|+||++.+|...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~ 106 (250)
T PRK14266 29 NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD--PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAY 106 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc--ccccHHHHhhheEEEecCCccCcchHHHHHHh
Confidence 46789999999999999999999864 489999999963211 1122345677899999998766310
Q ss_pred ---cC---Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 ---TL---DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 ---~~---~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.. .. ...+.+.++++.+++ .+.. .+|+||+||++||||++.+|+++++| ||++.+|...++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EP~~gLD~~~~~ 183 (250)
T PRK14266 107 GLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD---EPCSALDPISTT 183 (250)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCCccCCHHHHH
Confidence 00 11 112345566666553 1222 37999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 184 ~l 185 (250)
T PRK14266 184 KI 185 (250)
T ss_pred HH
Confidence 44
No 281
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.94 E-value=1.5e-27 Score=177.79 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=94.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHHHh-hcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKLTK-ELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~V~Q~~~l~~~~~-------- 70 (143)
++.++|+||||||||||+++|+|+ ++|++|+|+++|.. +........++ .++|++|++.+++..+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~----~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGES----ILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEE----cccCChhhhheeeEEEEeccccccccccHHHHHHHh
Confidence 467999999999999999999998 57999999999963 33333333333 4789999876542110
Q ss_pred C---------Ch----hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 71 L---------DI----QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 ~---------~~----~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
. .. +..+.+.++++.+++. +.. .+||||+|||+||||++.+|+++++| ||++.+|..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~ 185 (252)
T CHL00131 109 YNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD---ETDSGLDID 185 (252)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHH
Confidence 0 00 1123456677777653 121 38999999999999999999999999 999999998
Q ss_pred hhhhc
Q 032336 131 VQEKY 135 (143)
Q Consensus 131 ~~~~~ 135 (143)
.++.+
T Consensus 186 ~~~~l 190 (252)
T CHL00131 186 ALKII 190 (252)
T ss_pred HHHHH
Confidence 87744
No 282
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.3e-27 Score=177.05 Aligned_cols=127 Identities=15% Similarity=0.059 Sum_probs=94.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccc--cHHHHHhhcchhccccccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYSLVNF------ 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~l~~~------ 68 (143)
+..++|+||||||||||+++|+|+.++ ++|+|.++|..+ ... .....++.++|++|++.+++.
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~----~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni 107 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI----MDSGADVVALRRKIGMVFQRPNPFPKSIYENV 107 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc----cccccchhhhhceEEEEecCCccCcccHHHHH
Confidence 457899999999999999999999753 489999999633 222 234556779999999876531
Q ss_pred --c-c---C-Ch-hhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 69 --S-T---L-DI-QDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 69 --~-~---~-~~-~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. . . .. +..+.+.++++.+++ .+... +|+||+|||+||||++.+|+++++| ||++.+|...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~~~ 184 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD---EPCSALDPIA 184 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHH
Confidence 0 0 0 11 112345566666554 12332 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 185 ~~~l 188 (253)
T PRK14261 185 TAKI 188 (253)
T ss_pred HHHH
Confidence 8744
No 283
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-27 Score=192.06 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=96.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcceeehhhhcccc-HHHHHhhcchhccccc---ccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYS---LVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~---l~~~~------- 69 (143)
+..++|+||||||||||+|+|+|+++ |++|+|.++|..+ .... ....++.++|++|++. +++..
T Consensus 288 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV----KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC----CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 45789999999999999999999998 5999999999633 2222 2334567999999852 33110
Q ss_pred -----cC------C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 70 -----TL------D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 70 -----~~------~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.. . .+..+.+.++++.+++. +..+ +||||||||+||||++.+|++|++| ||++.+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD---EPt~~LD~~~ 440 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD---EPTRGIDVGA 440 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc---CCCCCcCHhH
Confidence 00 1 11234577888888763 2333 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 441 ~~~l 444 (506)
T PRK13549 441 KYEI 444 (506)
T ss_pred HHHH
Confidence 8754
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=2e-27 Score=193.18 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=95.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcc-----------------------eeeh---hhhcc---ccHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSN-----------------------VFYL---QAVHN---SACR 50 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g-----------------------~~~~---~~~~~---~~~~ 50 (143)
+..++|+||||||||||+|+|+|++ +|++|+|.+++ ..+. .+... ....
T Consensus 26 Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 105 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR 105 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHH
Confidence 4678999999999999999999997 79999999872 1000 00101 0112
Q ss_pred HHHhhcchhccc-cccccccc-------------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh
Q 032336 51 KLTKELCDVIED-YSLVNFST-------------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR 110 (143)
Q Consensus 51 ~~~~~ig~V~Q~-~~l~~~~~-------------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~ 110 (143)
.+++.++|+||+ +.+++..+ .. .+..+++.++++.+++. +..+ +||||||||+|||||+.
T Consensus 106 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~ 185 (520)
T TIGR03269 106 RIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK 185 (520)
T ss_pred HhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhc
Confidence 345679999997 44442111 11 12235677888888763 3333 79999999999999999
Q ss_pred cCCcccccCCccccchhhhhhhhhc
Q 032336 111 NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 111 ~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|++||+| ||++.||...++.+
T Consensus 186 ~p~lllLD---EPt~~LD~~~~~~l 207 (520)
T TIGR03269 186 EPFLFLAD---EPTGTLDPQTAKLV 207 (520)
T ss_pred CCCEEEee---CCcccCCHHHHHHH
Confidence 99999999 99999999888754
No 285
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=2.4e-27 Score=210.98 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=105.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~ 75 (143)
++++||+|+||||||||+++|.|+++|++|+|.++|. ++...+...+|+++++|||++.+|.- .. .....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~----dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~s 1387 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL----NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS 1387 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE----EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCC
Confidence 5789999999999999999999999999999999997 66778889999999999999998831 11 11223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++++.+++. .+..+|||||||++||||+..+|++|++| |||+.+|.++...+.
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD---EaTSalD~~Te~~Iq 1461 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD---EATAAVDLETDNLIQ 1461 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence 44566677765431 12337999999999999999999999999 999999998876543
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.3e-27 Score=177.48 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=95.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++| ++|+|.++|..+.. .......+++.++|++|++.+++. +.
T Consensus 51 Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~ 127 (272)
T PRK14236 51 NRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD--KKVDVAELRRRVGMVFQRPNPFPK-SIYENVV 127 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc--cccCHHHHhccEEEEecCCccCcc-cHHHHHH
Confidence 467899999999999999999999874 89999999963321 112334567789999999876531 10
Q ss_pred ---------Ch-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ---------DI-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ---------~~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. ...+.+.++++.+++. +.. .+|+||+|||+||||++.+|+++++| ||++.+|...+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD---EPt~gLD~~~~ 204 (272)
T PRK14236 128 YGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD---EPTSALDPIST 204 (272)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHH
Confidence 01 1123456666665541 222 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
..+
T Consensus 205 ~~l 207 (272)
T PRK14236 205 LKI 207 (272)
T ss_pred HHH
Confidence 643
No 287
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-27 Score=176.47 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=96.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|..+.. .......+++.++|++|++.+++ .+.
T Consensus 33 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~--~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~ 109 (261)
T PRK14258 33 SKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVA 109 (261)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc--cccchHHhhccEEEEecCCccCc-ccHHHHHH
Confidence 4678999999999999999999999985 7999998863210 11223455677999999987653 111
Q ss_pred ---------Ch-hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 ---------DI-QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ---------~~-~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. +..+.+.++++.+++ .+.. .+||||+|||+|||+++.+|+++++| ||++.+|...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD---EP~~~LD~~~~ 186 (261)
T PRK14258 110 YGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD---EPCFGLDPIAS 186 (261)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHHH
Confidence 11 113445667777664 1233 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 187 ~~l 189 (261)
T PRK14258 187 MKV 189 (261)
T ss_pred HHH
Confidence 744
No 288
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-27 Score=175.88 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=97.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeeh--hhhccccHHHHHhhcchhccccccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYL--QAVHNSACRKLTKELCDVIEDYSLVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.... .++...+...+++.++|++|++.+++..+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 115 (257)
T PRK14246 36 NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPL 115 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHH
Confidence 4679999999999999999999999999988887774321 12333344556778999999987653211
Q ss_pred ----CC-h-hhHHHHHHHHHHhhhh-------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 ----LD-I-QDKESVAKLVKLIDKS-------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ----~~-~-~~~~~~~~~l~~l~~~-------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. . +....+.++++.+++. +.. .+|+||+||++||||++.+|+++++| ||++.+|...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllD---EPt~~LD~~~~~~ 191 (257)
T PRK14246 116 KSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD---EPTSMIDIVNSQA 191 (257)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCCccCCHHHHHH
Confidence 11 1 1124566777776652 222 27999999999999999999999999 9999999987663
No 289
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=180.41 Aligned_cols=129 Identities=13% Similarity=0.079 Sum_probs=96.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-------- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-------- 68 (143)
+..++|+||||||||||+++|+|+++ |++|+|.++|..+.. .......+++.++|++|++.+++.
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~--~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 148 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ--DGVNLVELRKRVGMVFQSPNPFPKSIRENISY 148 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--ccccHHHHhhceEEEccCCccccccHHHHHHh
Confidence 45789999999999999999999986 689999999963321 112334566789999999875421
Q ss_pred --cc--------------CC--hhhHHHHHHHHHHhhh-------hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCc
Q 032336 69 --ST--------------LD--IQDKESVAKLVKLIDK-------SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPS 121 (143)
Q Consensus 69 --~~--------------~~--~~~~~~~~~~l~~l~~-------~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~ 121 (143)
.. .. ....+.+.++++.+++ .+..+ +||||+|||+|||||+++|++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD--- 225 (305)
T PRK14264 149 GPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD--- 225 (305)
T ss_pred HHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 00 00 1113446666776654 12333 7999999999999999999999999
Q ss_pred cccchhhhhhhhhc
Q 032336 122 FHLFQSLAEVQEKY 135 (143)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (143)
||++.+|...+..+
T Consensus 226 EPtsgLD~~~~~~l 239 (305)
T PRK14264 226 EPASALDPIATSKI 239 (305)
T ss_pred CCcccCCHHHHHHH
Confidence 99999999887744
No 290
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=3.3e-27 Score=210.20 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=104.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----cc-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----ST-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~-~~~~~ 75 (143)
+.++||+|+||||||||+++|.|+++|++|+|.++|. ++...+.+.+|+.|++|||++.+|.- .. .....
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~----di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s 1411 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR----EIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS 1411 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----EcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCC
Confidence 5689999999999999999999999999999999997 66777888999999999999998831 11 11223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhc-CCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRN-VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~-p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.+.++++.+++. .+.-+|||||||++|||||..+ |++|+|| |||+.+|.++...+
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD---EATSaLD~~te~~I 1485 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD---EATANIDPALDRQI 1485 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe---CCCccCCHHHHHHH
Confidence 45677777776531 1233799999999999999995 8999999 99999998887654
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=3.7e-27 Score=192.04 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=96.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHHhhcchhccccc--cccccc------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLTKELCDVIEDYS--LVNFST------ 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~~~ig~V~Q~~~--l~~~~~------ 70 (143)
+..++|+||||||||||+|+|+|+++ ++|+|+++|..+ ...+. ..+++.++||||++. +++..+
T Consensus 312 Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i----~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~ 386 (529)
T PRK15134 312 GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPL----HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEc----cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHH
Confidence 45789999999999999999999995 899999999633 22222 234567999999963 332110
Q ss_pred ---------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 ---------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ---------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. .+..+.+.++++.+++. +..+ +||||||||+||||++.+|+++|+| ||++.+|...++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~~LD~~~~~~ 463 (529)
T PRK15134 387 EGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD---EPTSSLDKTVQAQ 463 (529)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee---CCccccCHHHHHH
Confidence 11 12235677888887763 3333 7999999999999999999999999 9999999998875
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
+.
T Consensus 464 l~ 465 (529)
T PRK15134 464 IL 465 (529)
T ss_pred HH
Confidence 43
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=1.8e-27 Score=169.40 Aligned_cols=86 Identities=17% Similarity=0.089 Sum_probs=76.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------------~i~~~~q~~~----------------- 71 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------------TPVYKPQYID----------------- 71 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------------EEEEEcccCC-----------------
Confidence 4678999999999999999999999999999999884 1677777542
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||+||+++|||++.+|+++++| ||++.+|...++.+
T Consensus 72 ------------LSgGq~qrv~laral~~~p~lllLD---EPts~LD~~~~~~l 110 (177)
T cd03222 72 ------------LSGGELQRVAIAAALLRNATFYLFD---EPSAYLDIEQRLNA 110 (177)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence 8999999999999999999999999 99999999887643
No 293
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=2.9e-27 Score=171.40 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=84.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~ 75 (143)
+..++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.. ... ...
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------------~i~~~~q~~~l~~~t~~enl~~~~~~~ 93 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------------SIAYVSQEPWIQNGTIRENILFGKPFD 93 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------------EEEEEecCchhccCcHHHHhccCCCcC
Confidence 357899999999999999999999999999999877 388999987765211 010 001
Q ss_pred HHHHHHHHHHhh------hh----------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLID------KS----------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~------~~----------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+...++++.++ .. ....+|+||+|||+||||++.+|+++++| ||++.+|...++..
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l 166 (204)
T cd03250 94 EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD---DPLSAVDAHVGRHI 166 (204)
T ss_pred HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCHHHHHHH
Confidence 112223333222 11 11237999999999999999999999999 99999999887643
No 294
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-27 Score=186.83 Aligned_cols=128 Identities=11% Similarity=0.083 Sum_probs=106.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----cccCC--hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----FSTLD--IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----~~~~~--~~ 74 (143)
++++||+|+||||||||+.+|.|.++|++|+|.++|. ++...+.+.++..+++++|...+|. +.... ..
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~----~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV----EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc----ChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 5789999999999999999999999999999999997 6677777889999999999999882 11111 12
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++++++. .+..+||||+||++|||+|.++.++++|| |||..||..+...++
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLD---EPTegLD~~TE~~vL 514 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD---EPTEGLDPITERQVL 514 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEec---CCcccCChhhHHHHH
Confidence 245677778877642 23347999999999999999999999999 999999998877543
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=189.16 Aligned_cols=127 Identities=10% Similarity=0.034 Sum_probs=96.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc---cccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS---LVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~---l~~~~~------- 70 (143)
+..++|+||||||||||+++|+|+.+|++|+|+++|.. +...+. ..+++.++|++|++. +++..+
T Consensus 274 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK----INNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred CcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE----CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 46799999999999999999999999999999999963 322232 234567999999843 222110
Q ss_pred ------------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 ------------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 ------------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.. ....+.+.++++.+++. +..+ +||||||||+||||++.+|++||+| |||+.+|...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLD---EPt~gLD~~~ 426 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD---EPTRGIDVGA 426 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEc---CCCcccChhH
Confidence 01 11234566777777663 2233 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 427 ~~~~ 430 (491)
T PRK10982 427 KFEI 430 (491)
T ss_pred HHHH
Confidence 8754
No 296
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=174.56 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=93.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--c---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--L---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
+..++|+||||||||||+++|+|+++ | ++|+|.++|..+.. ........++.++|++|++.+++. +.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~~~-tv~~nl~ 107 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA--PNEDVVQLRKQVGMVFQQPNPFPF-SIYENVI 107 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc--ccccHHHhcCeEEEEECCCccCCC-cHHHHHH
Confidence 35799999999999999999999875 4 58999999963321 112233456779999999876531 10
Q ss_pred --------Chhh--HHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 --------DIQD--KESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 --------~~~~--~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
...+ .+.+.++++.+++ .+.. .+|+||+|||+||||++.+|+++|+| ||++.+|...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---EPt~~LD~~~~ 184 (252)
T PRK14255 108 YGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD---EPTSALDPISS 184 (252)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHH
Confidence 1111 2234445555542 1233 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+.+
T Consensus 185 ~~l 187 (252)
T PRK14255 185 TQI 187 (252)
T ss_pred HHH
Confidence 744
No 297
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=5.4e-27 Score=184.98 Aligned_cols=128 Identities=14% Similarity=0.088 Sum_probs=101.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~~~--------- 71 (143)
++..||+|.||||||||+++|.|+++|++|+|+++|+ .+.-.++ ...+..||+|+|++.|++..++
T Consensus 30 GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~----~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 30 GEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK----EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred CcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCE----EeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 4678999999999999999999999999999999997 3333444 4456679999999998853321
Q ss_pred -------C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 -------D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 -------~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. ....+.+.++.++.++. +.++ +|-||||||+|-+||.+++++|+|| |||+-|-+.-.++++
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD---EPTaVLTP~E~~~lf 180 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD---EPTAVLTPQEADELF 180 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHHH
Confidence 1 23455677777777763 3443 6999999999999999999999999 999988776665544
No 298
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=180.91 Aligned_cols=129 Identities=14% Similarity=0.093 Sum_probs=95.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-----cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-----LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------- 69 (143)
+..++|+||||||||||+++|+|+.+ |++|+|.++|..+.. .......+++.++||||++.+|...
T Consensus 108 Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~--~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~ 185 (329)
T PRK14257 108 NKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS--KKISSLELRTRIGMVFQKPTPFEMSIFDNVAY 185 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc--cccchHhhhccEEEEecCCccCCCcHHHHHHh
Confidence 46799999999999999999999986 579999999974321 1223346778899999998876311
Q ss_pred -c----CChhh--HHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 70 -T----LDIQD--KESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 70 -~----~~~~~--~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. ...+. .+.+.++++.+++. ....+||||||||+||||++.+|+++|+| ||++.+|..+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD---EPts~LD~~~~~ 262 (329)
T PRK14257 186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD---EPTSALDPIATA 262 (329)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHH
Confidence 0 00111 12245556665431 22237999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 263 ~i 264 (329)
T PRK14257 263 KI 264 (329)
T ss_pred HH
Confidence 53
No 299
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.1e-27 Score=170.68 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=100.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc-----------c----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS-----------L---- 65 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~-----------l---- 65 (143)
++..+|+|||||||||||++++|.++|++|.+.+.|+..+ ..+. .++|++||+|.-... +
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G----~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG----KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSG 132 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeecc----CCcchHHHHHHhCccCHHHHhhcccccccceeeeec
Confidence 3567899999999999999999999999999999997433 2233 789999999863311 0
Q ss_pred -cc----cc-cCChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 66 -VN----FS-TLDIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 66 -~~----~~-~~~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
|. +. .+++++.+.+..+++.++. ++++. +|-||||||.|||||+.+|++|+|| ||+..+|....++
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD---EP~~GLDl~~re~ 209 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD---EPAQGLDLIAREQ 209 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec---CccccCChHHHHH
Confidence 00 11 2345667788888998875 35554 7999999999999999999999999 9999999988764
No 300
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.9e-27 Score=176.90 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=100.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-c----CCceEEEcceeehhhhccccHH---HHH-hhcchhccccc--ccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-L----IGSNICCSNVFYLQAVHNSACR---KLT-KELCDVIEDYS--LVNFS- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~----~~G~i~~~g~~~~~~~~~~~~~---~~~-~~ig~V~Q~~~--l~~~~- 69 (143)
++.+||+|.|||||||+.+.|+|+++ | .+|+|.|+|.+ +...+.+ ++| +.|+++||++. |.|..
T Consensus 31 GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~----l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~ 106 (316)
T COG0444 31 GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD----LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106 (316)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc----cccCCHHHHHhhcCceEEEEEcCchhhcCChhh
Confidence 46799999999999999999999997 3 57999999973 3333333 333 57999999975 22211
Q ss_pred -------------cC--ChhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336 70 -------------TL--DIQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 70 -------------~~--~~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
.. .++..+++.++|+.+++. +.|+ +|||++|||.||.|++.+|++|+.| |||+-
T Consensus 107 Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD---EPTTA 183 (316)
T COG0444 107 IGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD---EPTTA 183 (316)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC---CCcch
Confidence 11 223456788888888763 4555 7999999999999999999999999 99999
Q ss_pred hhhhhhhhcc
Q 032336 127 SLAEVQEKYI 136 (143)
Q Consensus 127 ~~~~~~~~~~ 136 (143)
||.-+|..++
T Consensus 184 LDvt~QaqIl 193 (316)
T COG0444 184 LDVTVQAQIL 193 (316)
T ss_pred hhHHHHHHHH
Confidence 9999998654
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=8.8e-27 Score=173.01 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=86.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+|+||||||||-|+|.|+++|++|+|+++|+ ++.... ..+..+++.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~----~i~~~~-----------------------~~~~~~~v~e 91 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK----DITKLS-----------------------KEERRERVLE 91 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc----chhhcc-----------------------hhHHHHHHHH
Confidence 4678999999999999999999999999999999996 322211 2234567888
Q ss_pred HHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 82 LVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 82 ~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
+|+.+++ ..+|+ +||||+||+.|||||+.+|++++.| ||++.+|..+|..
T Consensus 92 lL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~D---EpvSaLDvSiqaq 147 (268)
T COG4608 92 LLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD---EPVSALDVSVQAQ 147 (268)
T ss_pred HHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEec---CchhhcchhHHHH
Confidence 8998875 35555 7999999999999999999999999 9999999988864
No 302
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=6.4e-27 Score=189.06 Aligned_cols=129 Identities=9% Similarity=-0.027 Sum_probs=96.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccccHHHHHhhcchhccccccccc------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF------------ 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~------------ 68 (143)
+..++|+||||||||||+|+|+|+.++ ++|+|+++|..+. ........++.++|++|++.++..
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~---~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~ 362 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRG---SGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSG 362 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCC---CCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhc
Confidence 467899999999999999999998875 6999999996321 111223456789999998643210
Q ss_pred -c---c-C---ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 69 -S---T-L---DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 69 -~---~-~---~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. . . ..+..+.++++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|...++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~gLD~~~~~~ 439 (490)
T PRK10938 363 FFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD---EPLQGLDPLNRQL 439 (490)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHH
Confidence 0 0 0 112234677888888763 3333 7999999999999999999999999 9999999988775
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
+.
T Consensus 440 l~ 441 (490)
T PRK10938 440 VR 441 (490)
T ss_pred HH
Confidence 43
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.94 E-value=3.1e-27 Score=166.62 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=84.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|+|+++|++|+|.+++. +.++|++|++.++. . . +.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------~~i~~~~q~~~~~~-~--t------v~~ 82 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------EDLLFLPQRPYLPL-G--T------LRE 82 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------------ceEEEECCCCcccc-c--c------HHH
Confidence 4578999999999999999999999999999998762 45999999976431 1 1 111
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.. .....+|+||+||+++|||++.+|+++++| ||++.+|...++++.
T Consensus 83 nl~~---~~~~~LS~G~~~rv~laral~~~p~~lllD---EPt~~LD~~~~~~l~ 131 (166)
T cd03223 83 QLIY---PWDDVLSGGEQQRLAFARLLLHKPKFVFLD---EATSALDEESEDRLY 131 (166)
T ss_pred Hhhc---cCCCCCCHHHHHHHHHHHHHHcCCCEEEEE---CCccccCHHHHHHHH
Confidence 1111 023458999999999999999999999999 999999998887543
No 304
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=7.5e-27 Score=174.87 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=92.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHHHHH--hhcchhccccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACRKLT--KELCDVIEDYSLVNF 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~~~~--~~ig~V~Q~~~l~~~ 68 (143)
+..++|+|||||||||||++|+|+++|++|+|. ++|. ++........+ ..+++++|...+++.
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGS----ELQNYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCc----hhhhhhHHhhhcccceeeecchhccCch
Confidence 457999999999999999999999999999996 5564 22222111122 136788887665431
Q ss_pred c-------c-CChhhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 69 S-------T-LDIQDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 69 ~-------~-~~~~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. . ......+.+.++++.+++. +.. .+|+||+||+++|||++.+|+++++| ||++.+|...+.+
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPts~LD~~~~~~ 177 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD---EPSSYLDIKQRLN 177 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCCCCCHHHHHH
Confidence 0 0 1112345677888888763 233 27999999999999999999999999 9999999987653
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=181.89 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=103.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~--------- 70 (143)
+..++|+|.||||||||=..|.+++++. |+|.|.|+.+. ..+....+.+|+++-+|||||. |.|.++
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~-~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL 390 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID-GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc-ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence 4578999999999999999999999776 99999997432 2233334567788999999986 222111
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+ .+..+++.++|+.+|+. ++|+ +|||||||++||||++.+|+++++| ||++-||..+|.-+.
T Consensus 391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LD---EPTSALD~SVQaQvv 466 (534)
T COG4172 391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD---EPTSALDRSVQAQVL 466 (534)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEec---CCchHhhHHHHHHHH
Confidence 12 34457889999999873 6676 7999999999999999999999999 999999999987543
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=7.1e-27 Score=207.00 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc-ceeehhhhccccHHHHHhhcchhcccccccc--------cccCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS-NVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FSTLD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~-g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~~~~ 72 (143)
+..++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.+.+|+.|+||+|++.+|. +....
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~----~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH----NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc----chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCC
Confidence 46799999999999999999999999999999995 54 4555667778899999999998773 10000
Q ss_pred --------------------------------------------------------hhhHHHHHHHHHHhhh-------h
Q 032336 73 --------------------------------------------------------IQDKESVAKLVKLIDK-------S 89 (143)
Q Consensus 73 --------------------------------------------------------~~~~~~~~~~l~~l~~-------~ 89 (143)
....+.+.++++.+++ .
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 0112345566665542 1
Q ss_pred C---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 90 N---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 90 ~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+ ...+|||||||++||||++.+|++|+|| ||++.+|...++.+.
T Consensus 567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD---EpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD---EATSSLDNKSEYLVQ 619 (1466)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHH
Confidence 1 2237999999999999999999999999 999999998877543
No 307
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.8e-27 Score=174.87 Aligned_cols=130 Identities=10% Similarity=0.033 Sum_probs=94.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~----- 71 (143)
++.++|+||||||||||+++|+|+.+| ++|+|.++|..+...-.......+++.++|++|++.+++. +.
T Consensus 42 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~ 120 (265)
T PRK14252 42 KQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVA 120 (265)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHH
Confidence 467999999999999999999999875 7999999985221000112234566789999999876532 10
Q ss_pred --------Ch--hhHHHHHHHHHHhhh-------hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 --------DI--QDKESVAKLVKLIDK-------SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 --------~~--~~~~~~~~~l~~l~~-------~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. ...+.+.++++.+++ .+.. .+|+||+|||+||||++.+|+++++| ||++.+|....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~gLD~~~~ 197 (265)
T PRK14252 121 YGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD---EPTSALDPIAT 197 (265)
T ss_pred hHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCCccCCHHHH
Confidence 00 112345566665543 1222 37999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
+++
T Consensus 198 ~~l 200 (265)
T PRK14252 198 ASI 200 (265)
T ss_pred HHH
Confidence 754
No 308
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=185.24 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=101.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH-HHhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK-LTKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~ig~V~Q~~~l~~~~~---------- 70 (143)
++.+||+|.||||||||+|+|+|.++|++|+|.++|+ .....++.+ ....|+.|+|+..|++..+
T Consensus 34 GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~----~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 34 GEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK----PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred ceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE----EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 4678999999999999999999999999999999997 444445544 4456999999998874322
Q ss_pred -------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+ +...+.+.++|+.++.. +..+ +|.||||.|+||||+..++++++|| |||+.|...-++..
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD---EPTaaLt~~E~~~L 184 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD---EPTAALTVKETERL 184 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCHHHHHHH
Confidence 11 23456778888887762 3333 6999999999999999999999999 99999987666543
No 309
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=1.1e-26 Score=160.38 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=77.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|. +.++|++|
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~~i~~~~~-------------------- 70 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------VKIGYFEQ-------------------- 70 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------EEEEEEcc--------------------
Confidence 4678999999999999999999999999999999873 25888887
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+|+||+||++||||++.+|+++++| ||++.+|...++.+.
T Consensus 71 ------------lS~G~~~rv~laral~~~p~illlD---EP~~~LD~~~~~~l~ 110 (144)
T cd03221 71 ------------LSGGEKMRLALAKLLLENPNLLLLD---EPTNHLDLESIEALE 110 (144)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHH
Confidence 8999999999999999999999999 999999998877543
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=2e-26 Score=206.85 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=100.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|..+ .. ...+.++.+||+||++.+++..+
T Consensus 956 Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI----~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI----ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC----cc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999743 21 23456778999999987663221
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.++++++.+++. +..+ +||||||||+||+||+.+|+++++| ||++.+|...+..+
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD---EPTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD---EPTSGVDPYSRRSI 1100 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence 11 12235677888888763 3333 7999999999999999999999999 99999999887643
No 311
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=6.5e-26 Score=160.34 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=96.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc--c-----------cc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV--N-----------FS 69 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~--~-----------~~ 69 (143)
-.+||||.||||||||.|+|+|+++|++|+|.++|. .+...++..+.++|-++||+++-. | ..
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~----~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~ 115 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH----PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR 115 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCc----cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhh
Confidence 468999999999999999999999999999999996 455555666778899999998732 1 11
Q ss_pred ---cCCh-hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 70 ---TLDI-QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 70 ---~~~~-~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.... ...+++.+-|.++|+. +.++ ++-||+|||++||||+.+|++++-| |+...+|-..
T Consensus 116 l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD---eAl~~LD~sm 184 (267)
T COG4167 116 LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD---EALASLDMSM 184 (267)
T ss_pred hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh---hhhhhccHHH
Confidence 0122 2345677778888763 4444 6899999999999999999999999 7888777644
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-26 Score=188.47 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=89.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|. ..++|++|++.++...+.
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 91 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---------------ERLGKLRQDQFAFEEFTVLDTVIMGHTE 91 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEeccCCcCCCCcHHHHHHHhhHH
Confidence 4579999999999999999999999999999998762 237777777544321100
Q ss_pred ------------------------------------ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHh
Q 032336 72 ------------------------------------DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAV 109 (143)
Q Consensus 72 ------------------------------------~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~ 109 (143)
..+...++.++++.+++. +..+ +||||||||+|||||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 001123566778887763 2222 7999999999999999
Q ss_pred hcCCcccccCCccccchhhhhhhhhc
Q 032336 110 RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 110 ~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+|++||+| ||++.+|...++.+
T Consensus 172 ~~p~lLlLD---EPt~~LD~~~~~~l 194 (530)
T PRK15064 172 SNPDILLLD---EPTNNLDINTIRWL 194 (530)
T ss_pred cCCCEEEEc---CCCcccCHHHHHHH
Confidence 999999999 99999999887744
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=3.5e-26 Score=205.33 Aligned_cols=126 Identities=7% Similarity=-0.018 Sum_probs=100.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.++|+||||||||||+|+|+|+++|++|+|+++|..+ .. ...+.++.|||+||+..++...+
T Consensus 1965 GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i----~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI----LT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC----cc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence 467899999999999999999999999999999999743 21 23456678999999987653221
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+..+.++++++.+++. +..+ +||||||||++|+||+.+|++++|| ||++.+|...+..+
T Consensus 2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD---EPTsGLDp~sr~~l 2109 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD---EPTTGMDPQARRML 2109 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 11 12234567778888763 4444 7999999999999999999999999 99999999887743
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.93 E-value=4.8e-26 Score=189.31 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=99.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH----HHhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK----LTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~----~~~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|. ++...+.++ .++.++|+||++.+++..+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~----~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 109 (648)
T PRK10535 34 GEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQ----DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV 109 (648)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE----EcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence 4678999999999999999999999999999999996 333333332 2467999999988764221
Q ss_pred -------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+..+.+.++++.+++. +... +|+||+||++|||||+.+|+++++| ||+..+|...++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllD---EP~~gLD~~s~~~l 183 (648)
T PRK10535 110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD---EPTGALDSHSGEEV 183 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 1122344567778887763 2332 7999999999999999999999999 99999999988744
No 315
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=3.4e-26 Score=203.33 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=104.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c-cCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S-TLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~-~~~~~~ 75 (143)
+.++||+|+||||||||+++|.|+++ .+|+|.++|. ++...+...+|++++||||++.+|.- . ......
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~----di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~t 1319 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV----SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS 1319 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCC
Confidence 56899999999999999999999997 7999999997 56777888999999999999998831 1 111223
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++++.+++. .+..+|||||||++|||||..+|++|+|| |||+.+|.++..++.
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLD---EaTS~lD~~Te~~I~ 1393 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLD---EPSAHLDPVTLQIIR 1393 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEe---CCcccCCHHHHHHHH
Confidence 45677778776541 12237999999999999999999999999 999999998876553
No 316
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=2.7e-26 Score=184.33 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=101.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC----CceEEEcceeehhhhccccHHHHH-hhcchhccccc--ccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI----GSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYS--LVN------- 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~----~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~--l~~------- 67 (143)
++.+||+|.|||||||+.+.|.|++++. +|+|.++|.++. .+.....+.+| +.|+|+||++. +.|
T Consensus 35 GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~-~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Q 113 (539)
T COG1123 35 GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL-GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQ 113 (539)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh-cCCHHHHHHhccccEEEEecCchhhcCchhhHHHH
Confidence 5789999999999999999999999887 799999997332 12222223333 66999999975 211
Q ss_pred -------cccC-ChhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 68 -------FSTL-DIQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 68 -------~~~~-~~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+... ..+..+++.++|+++++. +.|+ +||||+|||.||+||+.+|++|+.| |||+.||..+|
T Consensus 114 i~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaD---EPTTaLDvt~q 190 (539)
T COG1123 114 IREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD---EPTTALDVTTQ 190 (539)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEEC---CCccccCHHHH
Confidence 1111 234566788888888763 2355 7999999999999999999999999 99999999998
Q ss_pred hhcc
Q 032336 133 EKYI 136 (143)
Q Consensus 133 ~~~~ 136 (143)
..+.
T Consensus 191 ~qIL 194 (539)
T COG1123 191 AQIL 194 (539)
T ss_pred HHHH
Confidence 7654
No 317
>PLN03211 ABC transporter G-25; Provisional
Probab=99.93 E-value=3.6e-26 Score=190.07 Aligned_cols=123 Identities=17% Similarity=0.071 Sum_probs=96.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC--CceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI--GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------- 70 (143)
++.++|+|||||||||||++|+|..+|+ +|+|.++|..+ . ...++.++||+|+..+++..+
T Consensus 94 Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~----~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a 165 (659)
T PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP----T----KQILKRTGFVTQDDILYPHLTVRETLVFCS 165 (659)
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC----c----hhhccceEEECcccccCCcCCHHHHHHHHH
Confidence 4679999999999999999999999885 89999999632 1 123456999999987653211
Q ss_pred -------CCh-hhHHHHHHHHHHhhhhC--------C--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 -------LDI-QDKESVAKLVKLIDKSN--------G--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 -------~~~-~~~~~~~~~l~~l~~~~--------~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
... +..+.++++++.+++.. . ..+||||||||+||++|+.+|+++++| ||++.||...+
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD---EPtsgLD~~~~ 242 (659)
T PLN03211 166 LLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD---EPTSGLDATAA 242 (659)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe---CCCCCcCHHHH
Confidence 011 22345778888887632 1 227999999999999999999999999 99999999887
Q ss_pred hhc
Q 032336 133 EKY 135 (143)
Q Consensus 133 ~~~ 135 (143)
...
T Consensus 243 ~~l 245 (659)
T PLN03211 243 YRL 245 (659)
T ss_pred HHH
Confidence 744
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.7e-26 Score=185.60 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=91.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc-------C-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST-------L- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~-------~- 71 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|++. ++...+ .
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------------ANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------------eEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 4578999999999999999999999999999998762 35899999863 221111 0
Q ss_pred -ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +||||||||+||||++.+|+++++| ||++.+|...++.+
T Consensus 410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 477 (530)
T PRK15064 410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD---EPTNHMDMESIESL 477 (530)
T ss_pred cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 112234577788887652 3443 7999999999999999999999999 99999999887744
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=3.8e-26 Score=187.10 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=88.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI-------- 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~-------- 73 (143)
+..++|+|||||||||||++|+|+++|++|+|.+++. ..++||+|++.+++..+..+
T Consensus 33 Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------------IKVGYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence 4578999999999999999999999999999987641 24899999876543211000
Q ss_pred -----------------h-------------------------hHHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHH
Q 032336 74 -----------------Q-------------------------DKESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKI 107 (143)
Q Consensus 74 -----------------~-------------------------~~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~a 107 (143)
. ....+.++++.+++. +..+ +||||||||+||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence 0 012344555555552 2233 79999999999999
Q ss_pred HhhcCCcccccCCccccchhhhhhhhhc
Q 032336 108 AVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 108 l~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
++.+|+++|+| ||++.||....+.+
T Consensus 178 l~~~p~vlLLD---EPt~~LD~~~~~~l 202 (556)
T PRK11819 178 LLEKPDMLLLD---EPTNHLDAESVAWL 202 (556)
T ss_pred HhCCCCEEEEc---CCCCcCChHHHHHH
Confidence 99999999999 99999999887743
No 320
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=9.7e-26 Score=162.50 Aligned_cols=129 Identities=18% Similarity=0.127 Sum_probs=99.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc--ccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL--VNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l--~~~~~--------- 70 (143)
+.++.|||.||||||||+++|+|-+.|++|+|.++|. ++.+++....+..++-|||+|.. ++..+
T Consensus 32 g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~----dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~ 107 (263)
T COG1101 32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV----DVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAE 107 (263)
T ss_pred CceEEEEcCCCccHHHHHHHhhCccccCCceEEECce----ecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHH
Confidence 3578899999999999999999999999999999997 66777777788889999999852 21111
Q ss_pred -------C----ChhhHHHHHHHHHHhhh--h---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 -------L----DIQDKESVAKLVKLIDK--S---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 -------~----~~~~~~~~~~~l~~l~~--~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+ .....+...+-+..+++ . ... .+||||||.+++++|-.+.|++|||| ||++.||+...
T Consensus 108 ~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD---EHTAALDPkta 184 (263)
T COG1101 108 SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD---EHTAALDPKTA 184 (263)
T ss_pred hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec---chhhcCCcchH
Confidence 1 11122333444454443 2 222 26999999999999999999999999 99999999888
Q ss_pred hhccC
Q 032336 133 EKYIK 137 (143)
Q Consensus 133 ~~~~~ 137 (143)
+-.|+
T Consensus 185 ~~vm~ 189 (263)
T COG1101 185 EFVME 189 (263)
T ss_pred HHHHH
Confidence 75543
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=9.6e-26 Score=171.06 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=84.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~ 75 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.. ... ...
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-----------------i~yv~q~~~l~~~tv~enl~~~~~~~ 125 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-----------------ISFSSQFSWIMPGTIKENIIFGVSYD 125 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-----------------EEEEeCcccccccCHHHHhhcccccC
Confidence 4578999999999999999999999999999998762 78888887655310 000 000
Q ss_pred HHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.++++.+++ .. ...+|+||+|||+|||||+.+|+++++| ||++.+|....+.+
T Consensus 126 ~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD---EPt~gLD~~~~~~l 198 (282)
T cd03291 126 EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVFTEKEI 198 (282)
T ss_pred HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHH
Confidence 1112223332221 01 1247999999999999999999999999 99999999887744
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=5.5e-26 Score=186.04 Aligned_cols=116 Identities=13% Similarity=0.034 Sum_probs=86.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
+..++|+|||||||||||++|+|+++|++|+|.+++. ..++||+|++.+++..+..
T Consensus 31 Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~ 95 (552)
T TIGR03719 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG---------------IKVGYLPQEPQLDPTKTVRENVEEGVAE 95 (552)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------CEEEEEeccCCCCCCCcHHHHHHHhhHH
Confidence 4578999999999999999999999999999987641 2489999987654321100
Q ss_pred ------------------hhh-----------------------HHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHH
Q 032336 73 ------------------IQD-----------------------KESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKI 107 (143)
Q Consensus 73 ------------------~~~-----------------------~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~a 107 (143)
..+ ...+.++++.+++. +..+ +||||||||+||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~a 175 (552)
T TIGR03719 96 IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence 000 01233344444442 2222 79999999999999
Q ss_pred HhhcCCcccccCCccccchhhhhhhhhc
Q 032336 108 AVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 108 l~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
|+.+|++||+| ||++.+|....+.+
T Consensus 176 l~~~p~lLLLD---EPt~~LD~~~~~~l 200 (552)
T TIGR03719 176 LLSKPDMLLLD---EPTNHLDAESVAWL 200 (552)
T ss_pred HhcCCCEEEEc---CCCCCCChHHHHHH
Confidence 99999999999 99999999888743
No 323
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=157.24 Aligned_cols=95 Identities=17% Similarity=0.160 Sum_probs=82.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+++|+|+++|++|+|+++|.. +.......+++.++|++|
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~----~~~~~~~~~~~~i~~~~q-------------------- 80 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD----IAKLPLEELRRRIGYVPQ-------------------- 80 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE----cccCCHHHHHhceEEEee--------------------
Confidence 35789999999999999999999999999999999963 333334456677999988
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||+||+++|++++.+|+++++| ||++.+|......+
T Consensus 81 ------------lS~G~~~r~~l~~~l~~~~~i~ilD---Ep~~~lD~~~~~~l 119 (157)
T cd00267 81 ------------LSGGQRQRVALARALLLNPDLLLLD---EPTSGLDPASRERL 119 (157)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 8999999999999999999999999 99999998777643
No 324
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=5.1e-26 Score=167.33 Aligned_cols=121 Identities=15% Similarity=0.029 Sum_probs=85.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----ccc-cccCCh-h
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----LVN-FSTLDI-Q 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l~~-~~~~~~-~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|+++|.... . .....++.+.... +.. ...... +
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~-----~~~~~~~~~~~tv~enl~~~~~~~~~~~~~ 118 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS----L-----LGLGGGFNPELTGRENIYLNGRLLGLSRKE 118 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch----h-----hcccccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 4678999999999999999999999999999999996321 0 1111222221100 000 001111 2
Q ss_pred hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
..+.+.++++.+++. +..+ +||||+|||+||||++.+|+++++| ||++.+|...+..
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~gLD~~~~~~ 180 (224)
T cd03220 119 IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID---EVLAVGDAAFQEK 180 (224)
T ss_pred HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHH
Confidence 234566777777653 3333 7999999999999999999999999 9999999987664
No 325
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.9e-25 Score=163.62 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=99.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+...+++|||||||||+||+|.|++.|++|+|.++|..+ + ...+.+|||+|.+..|++..+
T Consensus 28 G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~----~----~~~~~rIGyLPEERGLy~k~tv~dql~yla~L 99 (300)
T COG4152 28 GEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL----S----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL 99 (300)
T ss_pred CeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch----h----hhhhhhcccChhhhccCccCcHHHHHHHHHHh
Confidence 457899999999999999999999999999999999632 2 345677999999999875433
Q ss_pred --C-ChhhHHHHHHHHHHhhhhC---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 --L-DIQDKESVAKLVKLIDKSN---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 --~-~~~~~~~~~~~l~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. ..+....+..+|+++++.. ..+ +|-|.||.+.+-.+++++|++++|| |||+.||+-+++
T Consensus 100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD---EPFSGLDPVN~e 167 (300)
T COG4152 100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD---EPFSGLDPVNVE 167 (300)
T ss_pred cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec---CCccCCChhhHH
Confidence 1 2244567788899887642 222 7999999999999999999999999 999999997776
No 326
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=152.15 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=97.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
++.+.|.|||||||||||..+.|.+.+ .+|+++++++ ++... ..-++++|++||++-+|++..+
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~----~l~~l--Pa~qRq~GiLFQD~lLFphlsVg~Nl~fA 101 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ----RLDML--PAAQRQIGILFQDALLFPHLSVGQNLLFA 101 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe----ecccc--chhhhheeeeecccccccccccccceEEe
Confidence 467889999999999999999999976 4899999996 33332 2345779999999998865432
Q ss_pred ------ChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ------DIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ------~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
....+..+..+|++.++. .+.+ +|||||.||++.|+|..+|+.+++| ||++.+|..-..
T Consensus 102 lp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD---EPFS~LD~ALR~ 171 (213)
T COG4136 102 LPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD---EPFSRLDVALRD 171 (213)
T ss_pred cCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC---CchhHHHHHHHH
Confidence 123345677888888764 3333 7999999999999999999999999 999999876544
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=1.9e-25 Score=183.83 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=89.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||+|+|+|+++|++|+|.++ ..++|++|++.++...++.
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~ 427 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------------LKISYKPQYIKPDYDGTVEDLLRSITDD 427 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------------eeEEEecccccCCCCCcHHHHHHHHhhh
Confidence 45789999999999999999999999999999753 1388999987643211110
Q ss_pred hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.++++.+++. ++.+ +||||||||+|||||+.+|+++|+| ||++.||...+..+
T Consensus 428 ~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD---EPt~~LD~~~~~~l 492 (590)
T PRK13409 428 LGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD---EPSAHLDVEQRLAV 492 (590)
T ss_pred cChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence 01122456778877653 4444 7999999999999999999999999 99999999887743
No 328
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.92 E-value=3.5e-25 Score=183.36 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=98.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
+..++|+|||||||||||++|+|..++. +|+|.++|.. +. ...+++.++||+|++.+++..++
T Consensus 51 Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~----~~---~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~ 123 (617)
T TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP----ID---AKEMRAISAYVQQDDLFIPTLTVREHLMFQ 123 (617)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE----CC---HHHHhhhceeeccccccCccCcHHHHHHHH
Confidence 4679999999999999999999998875 7999999963 22 24567789999999876643211
Q ss_pred ---------C-hhhHHHHHHHHHHhhhh---CC--------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 72 ---------D-IQDKESVAKLVKLIDKS---NG--------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 72 ---------~-~~~~~~~~~~l~~l~~~---~~--------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
. .+..+.++++++.+++. +. ..+||||||||+||++|+.+|+++++| ||++.||..
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD---EPtsgLD~~ 200 (617)
T TIGR00955 124 AHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD---EPTSGLDSF 200 (617)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee---CCCcchhHH
Confidence 1 12335678888887753 11 237999999999999999999999999 999999998
Q ss_pred hhhhcc
Q 032336 131 VQEKYI 136 (143)
Q Consensus 131 ~~~~~~ 136 (143)
++..++
T Consensus 201 ~~~~l~ 206 (617)
T TIGR00955 201 MAYSVV 206 (617)
T ss_pred HHHHHH
Confidence 887654
No 329
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=1.5e-25 Score=186.67 Aligned_cols=116 Identities=9% Similarity=0.128 Sum_probs=91.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC-----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL----- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~----- 71 (143)
++.++|+||||||||||+++|+|+++|++|+|.+++ ++.++||+|++.+++.. ..
T Consensus 478 Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 478 GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 467899999999999999999999999999997542 34699999998765310 00
Q ss_pred ----ChhhHHHHHHHHHHhhhh---C-----------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 ----DIQDKESVAKLVKLIDKS---N-----------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 ----~~~~~~~~~~~l~~l~~~---~-----------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.....+.+.++++.+++. + ...+|||||||++||||++++|+++++| ||++.+|....+
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD---Epts~LD~~~~~ 619 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD---ECTSAVSVDVEG 619 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHH
Confidence 011234566777777652 1 1348999999999999999999999999 999999998876
Q ss_pred hc
Q 032336 134 KY 135 (143)
Q Consensus 134 ~~ 135 (143)
.+
T Consensus 620 ~l 621 (659)
T TIGR00954 620 YM 621 (659)
T ss_pred HH
Confidence 54
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=1.6e-25 Score=184.36 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=90.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHH--HHHhhcchhccccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACR--KLTKELCDVIEDYSLVNF 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~--~~~~~ig~V~Q~~~l~~~ 68 (143)
+..++|+||||||||||||+|+|+++|+.|+|. ++|. ++.....+ .....+++.+|....++.
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~----~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGT----ELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCCh----HHHHHHHHHhccCcceeecccchhhhhh
Confidence 357899999999999999999999999999997 7775 33221111 111234555554333221
Q ss_pred ---ccCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 69 ---STLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 69 ---~~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.++. .+....+.++++.+++. ++.+ +||||+|||+||+||+.+|+++|+| ||++.||....++.
T Consensus 175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLD---EPts~LD~~~~~~l 251 (590)
T PRK13409 175 VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD---EPTSYLDIRQRLNV 251 (590)
T ss_pred hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHH
Confidence 0110 12234677788888763 4444 7999999999999999999999999 99999999877643
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=2.4e-25 Score=182.23 Aligned_cols=116 Identities=17% Similarity=0.049 Sum_probs=89.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc--------C-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST--------L- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~--------~- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|++++. . .++|++|++. +++..+ .
T Consensus 348 Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-----~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 348 GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-----V----------KLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-----e----------EEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 4578999999999999999999999999999988431 1 4899999863 332111 0
Q ss_pred --C-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 --D-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 --~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ......+.++++.+++. +..+ +||||||||+||||++.+|+++|+| ||++.+|...++.+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 482 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD---EPTNDLDVETLRAL 482 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHHH
Confidence 0 01122355678887763 3333 7999999999999999999999999 99999999888754
No 332
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=6.3e-25 Score=165.24 Aligned_cols=125 Identities=17% Similarity=0.066 Sum_probs=80.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc-ccccCCh-hhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV-NFSTLDI-QDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~-~~~~~~~-~~~~~~ 79 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|.... ..... ...... .+.++..+. ....... +..+.+
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~---~~~~~-~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~ 124 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV---IAISA-GLSGQL-TGIENIEFKMLCMGFKRKEIKAMT 124 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE---Eeccc-CCCCCC-cHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578999999999999999999999999999999884100 00000 000000 001100000 0001111 222334
Q ss_pred HHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 80 AKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 80 ~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.++++.+++. +..+ +|+||+|||++|+|++.+|+++++| ||++.+|...++.
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD---EPt~gLD~~~~~~ 181 (264)
T PRK13546 125 PKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID---EALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHH
Confidence 5566665542 2333 7999999999999999999999999 9999999876653
No 333
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.1e-25 Score=154.52 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=95.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH----HHHhhcchhccccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR----KLTKELCDVIEDYSLVNF--------- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~----~~~~~ig~V~Q~~~l~~~--------- 68 (143)
++-++|-||||||||||||+|.+-|.|++|+|.+......-++....++ -.++.||||.|.....|.
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 5678999999999999999999999999999988543111133333332 245679999997543321
Q ss_pred -----ccCChhhHHHHHHHHHHhhhh------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 69 -----STLDIQDKESVAKLVKLIDKS------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 69 -----~~~~~~~~~~~~~~l~~l~~~------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
....+....++.+++.++++. ....+||||||||.|||.++.+-.+|||| ||++.||..+.
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLD---EPTasLDa~Nr 188 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLD---EPTASLDATNR 188 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEec---CCcccccccch
Confidence 111233456788888888763 22337999999999999999999999999 99999987554
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=3.1e-25 Score=181.76 Aligned_cols=116 Identities=15% Similarity=0.042 Sum_probs=89.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-ccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~~---------- 70 (143)
+..++|+||||||||||+++|+|+++|++|+|.+++. . .++|++|++ .+++..+
T Consensus 350 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----V----------KLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----e----------EEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 4578999999999999999999999999999988431 1 489999986 3332111
Q ss_pred -CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ......+.++++.+++. +..+ +||||||||+||||++.+|++|++| ||++.+|...++.+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l 484 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD---EPTNDLDVETLRAL 484 (556)
T ss_pred cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 00 01122345678887763 3333 7999999999999999999999999 99999999887744
No 335
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.9e-25 Score=159.02 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=97.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYSLVNFS----------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~~~~----------- 69 (143)
++--+|||||||||||++.+|+|--+|+.|+|+++|. .++..++..+++ ..||--||.|..|...
T Consensus 31 Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~---~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 31 GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGD---TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred CeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCc---hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence 3456899999999999999999999999999999993 255666555554 4599999999876211
Q ss_pred -----------cCChhhHHHHHHHHHHhhhhCC-----CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336 70 -----------TLDIQDKESVAKLVKLIDKSNG-----YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 70 -----------~~~~~~~~~~~~~l~~l~~~~~-----~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~ 129 (143)
....+...+++++|..+++.+. ..+|.||+||++|++.++++|++||+| ||++..-.
T Consensus 108 ~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD---EPvAGMTd 180 (249)
T COG4674 108 RDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD---EPVAGMTD 180 (249)
T ss_pred CCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec---CccCCCcH
Confidence 1234556789999999887532 227999999999999999999999999 88886544
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.9e-26 Score=187.72 Aligned_cols=130 Identities=14% Similarity=0.023 Sum_probs=89.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------ 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------ 69 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|.....-+........+..++||+|....+...
T Consensus 27 Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 106 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERND 106 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 45799999999999999999999999999999998741000000000000123456666543221100
Q ss_pred ------------cC-ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 70 ------------TL-DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 70 ------------~~-~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
.. ..+....+.++++.+++. +..+ +||||||||+||+||+.+|++|||| ||++.||..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD---EPtn~LD~~ 183 (638)
T PRK10636 107 GHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD---EPTNHLDLD 183 (638)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc---CCCCcCCHH
Confidence 00 011234677788888763 3333 7999999999999999999999999 999999998
Q ss_pred hhhh
Q 032336 131 VQEK 134 (143)
Q Consensus 131 ~~~~ 134 (143)
.++.
T Consensus 184 ~~~~ 187 (638)
T PRK10636 184 AVIW 187 (638)
T ss_pred HHHH
Confidence 8763
No 337
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=172.47 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=94.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCCh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLDI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~~ 73 (143)
+..+||+||||+||||++|++.+++...+|.|.++|+ ++.......+|+.||+||||..+|.. ..++.
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq----dIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~A 639 (790)
T KOG0056|consen 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ----DIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA 639 (790)
T ss_pred CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc----hHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCC
Confidence 4578999999999999999999999999999999997 66666777899999999999998732 11222
Q ss_pred hhH-----HHHHHHHHHh-hhhC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 74 QDK-----ESVAKLVKLI-DKSN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 74 ~~~-----~~~~~~l~~l-~~~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.++ .++.++-+++ .... +.-+||||||||+|||++..+|.++++| |+++-+|-.+.
T Consensus 640 sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLD---EATSALDT~tE 710 (790)
T KOG0056|consen 640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLD---EATSALDTNTE 710 (790)
T ss_pred ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEc---chhhhcCCccH
Confidence 111 1122222221 1111 2226999999999999999999999999 99998876443
No 338
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-24 Score=155.66 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=98.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCCceEEEcceeehhhhccccHHHHHh-hcchhcccccccc------ccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIGSNICCSNVFYLQAVHNSACRKLTK-ELCDVIEDYSLVN------FST-- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~V~Q~~~l~~------~~~-- 70 (143)
++..+|+||||||||||.++|+|.- ++++|+|.++|+ ++...++.++++ .+..-||.|.=++ |..
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge----dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE----DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc----ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 4678999999999999999999985 779999999997 556666665554 5788899986331 110
Q ss_pred ---------CChhhHHHHHHHHHHhhh----hCCCc---CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 ---------LDIQDKESVAKLVKLIDK----SNGYI---FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ---------~~~~~~~~~~~~l~~l~~----~~~~~---lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
...+-...+.++++.+++ .++++ +||||++|.+|+++++.+|++.+|| ||.|.+|.+.-+
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILD---E~DSGLDIdalk 181 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILD---EPDSGLDIDALK 181 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEec---CCCcCccHHHHH
Confidence 012334567777777765 36666 6999999999999999999999999 999999986543
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-25 Score=182.48 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=89.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccccc-------C-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNFST-------L- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~~~-------~- 71 (143)
+..++|+|||||||||||++|+|+++|++|+|.+++. ..++|++|+.. +....+ .
T Consensus 338 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~igy~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG---------------IKLGYFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------------EEEEEecCcchhhCCccchHHHHHHHhC
Confidence 4679999999999999999999999999999988641 14888888642 221100 1
Q ss_pred ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.......+.++++.+++. +..+ +||||||||+||++++.+|++|||| |||+.||....+.+
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD---EPt~~LD~~~~~~l 469 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD---EPTNHLDLDMRQAL 469 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 112234567788887762 2333 7999999999999999999999999 99999999887743
No 340
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=1.1e-24 Score=192.70 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=96.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc---cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS---LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+|||||||||||++|+|+.+ |++|+|.++|.. +. ..+++.++||+|+..+++..+
T Consensus 789 Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~----~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~ 860 (1394)
T TIGR00956 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP----LD----SSFQRSIGYVQQQDLHLPTSTVRESLRFS 860 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE----CC----hhhhcceeeecccccCCCCCCHHHHHHHH
Confidence 45789999999999999999999997 688999999963 22 235678999999866442111
Q ss_pred --------CCh-hhHHHHHHHHHHhhhh---CCC------cCCchhHHHHHHHHHHhhcCC-cccccCCccccchhhhhh
Q 032336 71 --------LDI-QDKESVAKLVKLIDKS---NGY------IFAGMDASAVEFSKIAVRNVD-WDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 --------~~~-~~~~~~~~~l~~l~~~---~~~------~lSgGe~qrv~ia~al~~~p~-~llld~~~~~~~~~~~~~ 131 (143)
... +..+.++++++.+++. +.. -+||||||||+||++|+.+|+ +|++| ||++.||...
T Consensus 861 a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLD---EPTsgLD~~~ 937 (1394)
T TIGR00956 861 AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD---EPTSGLDSQT 937 (1394)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEc---CCCCCCCHHH
Confidence 111 2235678888888763 322 379999999999999999997 99999 9999999988
Q ss_pred hhhcc
Q 032336 132 QEKYI 136 (143)
Q Consensus 132 ~~~~~ 136 (143)
+..++
T Consensus 938 ~~~i~ 942 (1394)
T TIGR00956 938 AWSIC 942 (1394)
T ss_pred HHHHH
Confidence 77543
No 341
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-24 Score=152.06 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=93.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----------ccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----------FST 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----------~~~ 70 (143)
++.+.|.||||||||||||+|+|+.+|++|+|+++|. .+.. ..+..++.+-|+-..+.+-. ...
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~----~i~~-~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGE----PIQN-VRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCC----CCcc-chhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 4678899999999999999999999999999999985 2221 12224566677765554311 110
Q ss_pred CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
....+...+.++++.+++. +-.+ +|.|||+||++||..+..+++-++| ||++.+|.+.+.
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD---EP~taLDk~g~a 167 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD---EPFTALDKEGVA 167 (209)
T ss_pred hCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec---CcccccCHHHHH
Confidence 1113346788899999875 3333 7999999999999999999999999 999999987654
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=1.2e-24 Score=182.20 Aligned_cols=116 Identities=14% Similarity=0.044 Sum_probs=89.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc---------ccc-cC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV---------NFS-TL 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~---------~~~-~~ 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.+++. ..++|++|++... .+. ..
T Consensus 535 Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---------------~~igyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 535 DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---------------VRMAVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------------eeEEEEeccccccCCcchhHHHHHHHhc
Confidence 4578999999999999999999999999999987541 2488999875210 000 01
Q ss_pred ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.....+.+.++++.+++. +..+ +||||||||+||||++.+|++|||| ||++.||....+.+
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD---EPT~~LD~~s~~~l 666 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD---EPSNHLDLDAVEAL 666 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 111234577788887763 3333 7999999999999999999999999 99999999877644
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.91 E-value=2.7e-24 Score=157.12 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=75.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-EcceeehhhhccccHHHHHhhcchhccccccccc-----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-CSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----------S 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----------~ 69 (143)
+..++|+||||||||||+++|+|+++|++|+|. ++|.... ++ +.+.+++. .
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------------~~---~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------------LG---ANSFILPGLTGEENARMMAS 75 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------------cc---cccccCCcCcHHHHHHHHHH
Confidence 457899999999999999999999999999997 6663210 11 11111110 0
Q ss_pred cCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 70 TLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 70 ~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.......+..+.+.+..++. +..+ +|+|||||+++|||++.+|+++++| ||++.+|...++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD---EP~~~lD~~~~~~ 142 (213)
T PRK15177 76 LYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD---GKLYTGDNATQLR 142 (213)
T ss_pred HcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHH
Confidence 00111111122222333332 3332 7999999999999999999999999 9999998877653
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=2.1e-24 Score=179.25 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=85.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----c------c----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----L------V---- 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l------~---- 66 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|......+.... .+..+++++|... + +
T Consensus 29 Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 105 (635)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDP---PRNVEGTVYDFVAEGIEEQAEYLKRYHDIS 105 (635)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCC---CCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999997731000000000 0111222222110 0 0
Q ss_pred ------------c--------ccc-CChhhHHHHHHHHHHhhhh-CCCc--CCchhHHHHHHHHHHhhcCCcccccCCcc
Q 032336 67 ------------N--------FST-LDIQDKESVAKLVKLIDKS-NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSF 122 (143)
Q Consensus 67 ------------~--------~~~-~~~~~~~~~~~~l~~l~~~-~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~ 122 (143)
. +.. ...+....+.++++.+++. +..+ +||||||||+|||||+.+|++||+| |
T Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLD---E 182 (635)
T PRK11147 106 HLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLD---E 182 (635)
T ss_pred HHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 0 000 0011234577788888774 3333 7999999999999999999999999 9
Q ss_pred ccchhhhhhhhh
Q 032336 123 HLFQSLAEVQEK 134 (143)
Q Consensus 123 ~~~~~~~~~~~~ 134 (143)
||+.||...++.
T Consensus 183 Pt~~LD~~~~~~ 194 (635)
T PRK11147 183 PTNHLDIETIEW 194 (635)
T ss_pred CCCccCHHHHHH
Confidence 999999988763
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=2e-24 Score=179.39 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=88.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------- 70 (143)
+..++|+|||||||||||++|+|+++|++|+|.+ |. .+ .++|++|++. +++..+
T Consensus 345 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~----~~----------~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT----KL----------EVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC----Cc----------EEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 3578999999999999999999999999999988 42 11 4899999753 332111
Q ss_pred -CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. ......+.++++.+++. +..+ +||||||||+||+|++.+|++|||| ||++.+|....+.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD---EPt~~LD~~~~~~l 479 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD---EPTNDLDVETLELL 479 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHH
Confidence 00 11123456677776542 3333 7999999999999999999999999 99999999887643
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.90 E-value=2.1e-24 Score=190.90 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=95.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc----ccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL----SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------- 70 (143)
++.++|+||||||||||||+|+|+. +|.+|+|.++|.. +.... ...++.++||+|+..+++..+
T Consensus 87 Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~----~~~~~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT----PEEIK-KHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEe----hHHHH-hhcCceeEEeccccccCCCCCHHHHHHH
Confidence 4679999999999999999999986 5789999999963 22111 234556999999876553211
Q ss_pred -------------CChhh-HHH-HHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336 71 -------------LDIQD-KES-VAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125 (143)
Q Consensus 71 -------------~~~~~-~~~-~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~ 125 (143)
...++ .+. ++++++.+++. +.. -+||||||||+||++|+.+|+++++| ||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD---EPTs 238 (1394)
T TIGR00956 162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD---NATR 238 (1394)
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe---CCCC
Confidence 11111 122 35578887764 222 27999999999999999999999999 9999
Q ss_pred hhhhhhhhhcc
Q 032336 126 QSLAEVQEKYI 136 (143)
Q Consensus 126 ~~~~~~~~~~~ 136 (143)
.||...+.+++
T Consensus 239 gLD~~~~~~i~ 249 (1394)
T TIGR00956 239 GLDSATALEFI 249 (1394)
T ss_pred CcCHHHHHHHH
Confidence 99998887544
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=5e-24 Score=188.76 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=96.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--------- 70 (143)
+..++|+|||||||||||++|+|..++ .+|+|.++|. +.. ....++.+|||+|+..+++..+
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~----~~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a 978 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF----PKK---QETFARISGYCEQNDIHSPQVTVRESLIYSA 978 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc----cCC---hHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence 457899999999999999999999763 6899999995 221 1235567999999976543211
Q ss_pred -------CC-hhhHHHHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 -------LD-IQDKESVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 -------~~-~~~~~~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.. .+..+.++++++.+++. +.. -+||||||||+||++|+.+|++|++| ||++.||...+
T Consensus 979 ~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD---EPTsgLD~~~a 1055 (1470)
T PLN03140 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD---EPTSGLDARAA 1055 (1470)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHH
Confidence 11 12234578888888763 332 37999999999999999999999999 99999999887
Q ss_pred hhcc
Q 032336 133 EKYI 136 (143)
Q Consensus 133 ~~~~ 136 (143)
..++
T Consensus 1056 ~~v~ 1059 (1470)
T PLN03140 1056 AIVM 1059 (1470)
T ss_pred HHHH
Confidence 7543
No 348
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=9e-24 Score=170.38 Aligned_cols=121 Identities=17% Similarity=0.011 Sum_probs=84.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc-----ccccc-cccCCh-h
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED-----YSLVN-FSTLDI-Q 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~-----~~l~~-~~~~~~-~ 74 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|.... ... ..++.++. ..+.. ...... +
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~~-------~~~l~~~lTV~EnL~l~~~~~~~~~~e 119 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IAI-------SSGLNGQLTGIENIELKGLMMGLTKEK 119 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EEe-------ccccCCCCcHHHHHHhhhhhcCCCHHH
Confidence 4678999999999999999999999999999999985210 000 01111110 00000 011111 2
Q ss_pred hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.++++.+++. +..+ +||||+|||+|||||+.+|+++++| ||++.+|......+
T Consensus 120 ~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD---EPTsgLD~~sr~~L 182 (549)
T PRK13545 120 IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID---EALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence 234566777777653 3333 7999999999999999999999999 99999999876643
No 349
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=155.96 Aligned_cols=126 Identities=10% Similarity=-0.029 Sum_probs=92.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-ccccccccccC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDYSLVNFSTL--------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~~l~~~~~~--------- 71 (143)
+..++++|||||||||+||+|+|++.|++|.|.++|.+. . ...++.-+++++|+ |...+.|....
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P---f--~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP---F--RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc---c--hhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 356899999999999999999999999999999999621 1 12233445677765 55555543221
Q ss_pred ----Ch-hhHHHHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ----DI-QDKESVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ----~~-~~~~~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +=.++.....+.+++. +.. -+|.|||.|+.+|.+|.+.|++|+|| |||-+||...+.++
T Consensus 125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLD---EpTvgLDV~aq~~i 195 (325)
T COG4586 125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD---EPTVGLDVNAQANI 195 (325)
T ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEec---CCccCcchhHHHHH
Confidence 11 1123444555555553 222 27999999999999999999999999 99999999888754
No 350
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=163.01 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=95.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCCh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLDI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~~ 73 (143)
+..++++||+|+||||+++++.+++.+.+|.|.++|+ +++...-..+|+.||.|||+..||.. .....
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q----dir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~a 364 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ----DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch----hHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccc
Confidence 4679999999999999999999999999999999996 66666667899999999999998831 11111
Q ss_pred hhHHHHHHHHHHhh-----------hh----CCC-cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 74 QDKESVAKLVKLID-----------KS----NGY-IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 74 ~~~~~~~~~l~~l~-----------~~----~~~-~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. .+.+..+.+... +. .++ .+||||||||+|||++..+|++|++| |+++-||-.+...
T Consensus 365 t-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~d---eatsaldt~te~~ 437 (497)
T COG5265 365 T-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD---EATSALDTHTEQA 437 (497)
T ss_pred c-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEe---hhhhHhhhhHHHH
Confidence 1 112222222221 11 122 26999999999999999999999999 9999998765543
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=7.4e-24 Score=189.32 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=89.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~ 74 (143)
+..++|+||+|||||||+++|.|.++|++ |+|.+. ..++||+|++.+|.- ... .+.
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-----------------~~Iayv~Q~p~LfngTIreNI~fg~~~ 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-----------------GTVAYVPQVSWIFNATVRDNILFGSPF 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-----------------CeEEEEcCccccCCCCHHHHHhCCCcc
Confidence 46799999999999999999999999999 899743 349999999998731 111 122
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.++..++++.+++ . .+..+||||||||+||||+..+|++++|| ||++.+|..+.++++
T Consensus 706 d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLD---EptSALD~~~~~~I~ 780 (1622)
T PLN03130 706 DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD---DPLSALDAHVGRQVF 780 (1622)
T ss_pred cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEC---CCccccCHHHHHHHH
Confidence 34455566655432 1 12237999999999999999999999999 999999998877654
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=9.8e-24 Score=150.09 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=76.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+|||||||||||+++. +++|++.+++. .... .+..++|++| .+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~-----~~~~----~~~~~~~~~q------------------~~ 69 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL----YASGKARLISF-----LPKF----SRNKLIFIDQ------------------LQ 69 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCc-----cccc----ccccEEEEhH------------------HH
Confidence 3578999999999999999985 37899998773 1111 1234667665 34
Q ss_pred HHHHhhhh----CCC--cCCchhHHHHHHHHHHhhc--CCcccccCCccccchhhhhhhhhc
Q 032336 82 LVKLIDKS----NGY--IFAGMDASAVEFSKIAVRN--VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 82 ~l~~l~~~----~~~--~lSgGe~qrv~ia~al~~~--p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+++.+++. +.. .+|+||+||+++|||++.+ |+++++| ||++.+|....+.+
T Consensus 70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlD---EPt~~LD~~~~~~l 128 (176)
T cd03238 70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILD---EPSTGLHQQDINQL 128 (176)
T ss_pred HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEe---CCcccCCHHHHHHH
Confidence 56666642 222 2799999999999999999 9999999 99999999887743
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=9.4e-24 Score=187.97 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=89.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC-Chhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL-DIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~-~~~~ 75 (143)
+..++|+||+|||||||+++|.|+++|++|.+. .+++.++||+|++.+|.- ... .+.+
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~ 706 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------------VIRGSVAYVPQVSWIFNATVRENILFGSDFE 706 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------------EecCcEEEEcCccccccccHHHHhhcCCccC
Confidence 467999999999999999999999999998763 134569999999998731 111 1223
Q ss_pred HHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.++..++++.+++ . .+..+|||||||++||||+..+|++++|| ||++.+|..+.++++
T Consensus 707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLD---EptSaLD~~t~~~I~ 780 (1495)
T PLN03232 707 SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD---DPLSALDAHVAHQVF 780 (1495)
T ss_pred HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHHHHH
Confidence 4455556655432 1 12237999999999999999999999999 999999998877554
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=2.3e-23 Score=185.70 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=87.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c-cCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S-TLD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~-~~~ 72 (143)
+..++|+||||||||||+++|+|+++|++|+|.++| .++||+|++.++.. . ...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~ 726 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-----------------SVAYVPQQAWIQNDSLRENILFGKALN 726 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------------EEEEEcCCccccCCcHHHHhhcCCccC
Confidence 457899999999999999999999999999999876 28999999887621 1 111
Q ss_pred hhhHHHHHHHH---HHhhhh----------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 73 IQDKESVAKLV---KLIDKS----------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 73 ~~~~~~~~~~l---~~l~~~----------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
++..+.+.++. +.++.. ....+||||||||+||||+..+|+++++| ||++.+|..+.+++++
T Consensus 727 ~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD---Ep~saLD~~~~~~i~~ 801 (1522)
T TIGR00957 727 EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVDAHVGKHIFE 801 (1522)
T ss_pred HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CCccccCHHHHHHHHH
Confidence 22222222221 222221 12237999999999999999999999999 9999999988876543
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=2.7e-23 Score=184.91 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=87.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cCC-hhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TLD-IQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~~-~~~ 75 (143)
+..++|+|||||||||||++|+|+++|++|+|.++|. ++||+|++.+++.. .+. ..+
T Consensus 452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~-----------------iayv~Q~~~l~~~Ti~eNI~~g~~~~ 514 (1490)
T TIGR01271 452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-----------------ISFSPQTSWIMPGTIKDNIIFGLSYD 514 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-----------------EEEEeCCCccCCccHHHHHHhccccc
Confidence 3578999999999999999999999999999998772 89999998876310 000 111
Q ss_pred HHHHHHHHHH------hhh---h-------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 76 KESVAKLVKL------IDK---S-------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 76 ~~~~~~~l~~------l~~---~-------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
.+...++++. ++. . ....+||||||||+||||++.+|+++||| ||++.+|..+.+++++
T Consensus 515 ~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD---ep~saLD~~~~~~i~~ 589 (1490)
T TIGR01271 515 EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFTHLDVVTEKEIFE 589 (1490)
T ss_pred hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHHH
Confidence 1112222222 111 1 12347999999999999999999999999 9999999998887654
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.1e-23 Score=186.48 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=94.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------- 71 (143)
+..++|+||||||||||||+|+|.++|+ +|+|.++|.. +.... .++.++||+|+..+++..++
T Consensus 191 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~----~~~~~---~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 191 SRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR----LNEFV---PRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe----chhhc---ccceeEEecccccCCCcCcHHHHHHHH
Confidence 4678999999999999999999999998 9999999963 22211 24679999998765432110
Q ss_pred ----------------Chhh-------------------------HHHHHHHHHHhhhhC--------CC--cCCchhHH
Q 032336 72 ----------------DIQD-------------------------KESVAKLVKLIDKSN--------GY--IFAGMDAS 100 (143)
Q Consensus 72 ----------------~~~~-------------------------~~~~~~~l~~l~~~~--------~~--~lSgGe~q 100 (143)
...+ ...++++++.+++.. .. -+||||||
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk 343 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK 343 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence 0000 012356777777642 22 27999999
Q ss_pred HHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 101 AVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 101 rv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
||.||++++.+|+++++| ||++.||...+..++
T Consensus 344 RVsia~aL~~~p~vlllD---EPTsGLDs~t~~~i~ 376 (1470)
T PLN03140 344 RVTTGEMIVGPTKTLFMD---EISTGLDSSTTYQIV 376 (1470)
T ss_pred eeeehhhhcCCCcEEEEe---CCCcCccHHHHHHHH
Confidence 999999999999999999 999999998887554
No 357
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=4.3e-24 Score=154.45 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=85.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCc---------eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGS---------NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ 74 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G---------~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~ 74 (143)
.++|+||||||||||+++|++++++..| ++.+.|. +... ...++.+++|||++..+ +. ..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~v~~vfq~~~~~-~~---~~ 92 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGS----ETRK---PANFAEVTLTFDNSDGR-YS---II 92 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCC----CCCC---CCceEEEEEEEEcCCCc-ee---EE
Confidence 5789999999999999999999866533 4555553 2111 12346799999998865 21 11
Q ss_pred hHHHHHHHHHHhhhhCCCc--CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKSNGYI--FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~~~~~--lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.++++..+..+..+ +|+||+||+++|++++ ..|+++++| ||++.+|...++.+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD---EP~~~LD~~~~~~l 156 (197)
T cd03278 93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD---EVDAALDDANVERF 156 (197)
T ss_pred ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe---CCcccCCHHHHHHH
Confidence 2345666666633333333 7999999999999997 456999999 99999998877754
No 358
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=3.9e-23 Score=170.72 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=98.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
++.+||+||+||||||||++|+|.... .+|+|.+||+ . ...+..++..|||.|+..+++..+
T Consensus 56 Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~----~---~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~ 128 (613)
T KOG0061|consen 56 GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR----P---RDSRSFRKISGYVQQDDVLLPTLTVRETLRFS 128 (613)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc----c---CchhhhhheeEEEcccccccccccHHHHHHHH
Confidence 467899999999999999999999864 6899999994 1 234567788999999988764322
Q ss_pred -----C---C-hhhHHHHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 -----L---D-IQDKESVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 -----~---~-~~~~~~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
. . .+..++++++++.+++. +.. -.|||||+||+||.-++.+|.+|++| |||+.||--.
T Consensus 129 A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD---EPTSGLDS~s 205 (613)
T KOG0061|consen 129 ALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD---EPTSGLDSFS 205 (613)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec---CCCCCcchhh
Confidence 1 1 34567899999998763 222 26999999999999999999999999 9999999766
Q ss_pred hh
Q 032336 132 QE 133 (143)
Q Consensus 132 ~~ 133 (143)
+.
T Consensus 206 A~ 207 (613)
T KOG0061|consen 206 AL 207 (613)
T ss_pred HH
Confidence 54
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=8.3e-23 Score=182.28 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=85.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~ 75 (143)
+..++|+|||||||||||++|+|+++|++|+|.+. +.++|++|++.++... . ....+
T Consensus 686 G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~ 748 (1560)
T PTZ00243 686 GKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------RSIAYVPQQAWIMNATVRGNILFFDEED 748 (1560)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------CeEEEEeCCCccCCCcHHHHHHcCChhh
Confidence 35789999999999999999999999999999742 3489999998875310 0 11112
Q ss_pred HHHHHHHHH---------Hh--hhh-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVK---------LI--DKS-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~---------~l--~~~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+...++++ .+ ++. ....+||||||||+||||++.+|++++|| ||++.+|..+.++++
T Consensus 749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD---EP~saLD~~~~~~i~ 822 (1560)
T PTZ00243 749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD---DPLSALDAHVGERVV 822 (1560)
T ss_pred HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCHHHHHHHH
Confidence 222223322 22 111 22337999999999999999999999999 999999988776544
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.88 E-value=6.2e-23 Score=166.47 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=84.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
+..+||||+||||||||||+|+|...|++|+|...+. -+++|++|++.+....++.
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------------LRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC---------------ceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 4578999999999999999999999999999986541 1378888887754211100
Q ss_pred -----------------------------------hhhHHHHHHHHHHhhhh--CCCc--CCchhHHHHHHHHHHhhcCC
Q 032336 73 -----------------------------------IQDKESVAKLVKLIDKS--NGYI--FAGMDASAVEFSKIAVRNVD 113 (143)
Q Consensus 73 -----------------------------------~~~~~~~~~~l~~l~~~--~~~~--lSgGe~qrv~ia~al~~~p~ 113 (143)
-+...++..++..++.. +..+ +|||||.||++|+||..+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pD 173 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD 173 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 00012333344444433 2233 79999999999999999999
Q ss_pred cccccCCccccchhhhhhhh
Q 032336 114 WDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 114 ~llld~~~~~~~~~~~~~~~ 133 (143)
+|||| |||-.||.+..+
T Consensus 174 lLLLD---EPTNHLD~~~i~ 190 (530)
T COG0488 174 LLLLD---EPTNHLDLESIE 190 (530)
T ss_pred EEEEc---CCCcccCHHHHH
Confidence 99999 999999997765
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.7e-22 Score=175.86 Aligned_cols=125 Identities=12% Similarity=0.113 Sum_probs=104.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc------cccCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN------FSTLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~------~~~~~~~~ 75 (143)
++++||+|..|||||||..+|-++..|.+|+|.+||. ++......++|++++++||+|.+|. ..+..+-.
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv----dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~s 1241 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV----DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYS 1241 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe----ecccccHHHHHhcCeeeCCCCceecCccccccCcccccC
Confidence 5789999999999999999999999999999999997 6677889999999999999999982 11222333
Q ss_pred HHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 76 KESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 76 ~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
++.+-++|+.+++. .+.-+|-||||.+++||||..++++|++| |+|+..|.++..
T Consensus 1242 D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLD---EATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1242 DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLD---EATASVDPETDA 1312 (1381)
T ss_pred HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEe---cccccCChHHHH
Confidence 45667777776541 12225889999999999999999999999 999999987654
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=1.3e-22 Score=157.56 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=99.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-----CCceEEEcceeehhhhccccHHH---HH-hhcchhccccc--cccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-----IGSNICCSNVFYLQAVHNSACRK---LT-KELCDVIEDYS--LVNF-- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~---~~-~~ig~V~Q~~~--l~~~-- 68 (143)
++.+||+|.||||||-..+.++++++. .+|+|.|+|. ++-..+.++ +| .+|+++||+|. |.|.
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~----dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE----DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh----hhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 578999999999999999999999854 3789999997 333334333 33 46999999986 2222
Q ss_pred ------------ccCC-hhhHHHHHHHHHHhhhh------CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchh
Q 032336 69 ------------STLD-IQDKESVAKLVKLIDKS------NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQS 127 (143)
Q Consensus 69 ------------~~~~-~~~~~~~~~~l~~l~~~------~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~ 127 (143)
...+ .+..+++.++|+.+++. +.|+ +||||+|||.||+||+.+|++|+-| |||+-|
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIAD---EPTTAL 188 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD---EPTTAL 188 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeec---CCcchh
Confidence 1222 34467788888888863 4444 7999999999999999999999999 999999
Q ss_pred hhhhhhhcc
Q 032336 128 LAEVQEKYI 136 (143)
Q Consensus 128 ~~~~~~~~~ 136 (143)
|.-+|-.+.
T Consensus 189 DVtvQaQIL 197 (534)
T COG4172 189 DVTVQAQIL 197 (534)
T ss_pred hhhhHHHHH
Confidence 998887553
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=3.2e-22 Score=167.72 Aligned_cols=131 Identities=13% Similarity=-0.017 Sum_probs=86.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc---ccCCceEEEcceeeh-hhhcc--------c-cHHHHHhhcchhccccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL---SLIGSNICCSNVFYL-QAVHN--------S-ACRKLTKELCDVIEDYSLVNF 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i~~~g~~~~-~~~~~--------~-~~~~~~~~ig~V~Q~~~l~~~ 68 (143)
+..+||+||||||||||||+|+|.. .|++|+|.+.++... .+... . ....++..+++++|++.+...
T Consensus 203 Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~ 282 (718)
T PLN03073 203 GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE 282 (718)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3579999999999999999999864 578899976443210 01000 0 011234558888887543210
Q ss_pred -----------ccCC-hhh-------------------HHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc
Q 032336 69 -----------STLD-IQD-------------------KESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN 111 (143)
Q Consensus 69 -----------~~~~-~~~-------------------~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~ 111 (143)
.... .+. ..++.+++..+++. +..+ +||||+|||+||+||+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~ 362 (718)
T PLN03073 283 TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIE 362 (718)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 0001 111 12334444444442 2333 799999999999999999
Q ss_pred CCcccccCCccccchhhhhhhhhc
Q 032336 112 VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 112 p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
|++|||| ||++.||....+.+
T Consensus 363 p~lLlLD---EPt~~LD~~~~~~l 383 (718)
T PLN03073 363 PDLLLLD---EPTNHLDLHAVLWL 383 (718)
T ss_pred CCEEEEE---CCCCCCCHHHHHHH
Confidence 9999999 99999999887644
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5e-22 Score=139.76 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=94.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceee-hhhh---ccccHHH-HHhhcchhccccc--cc----c---
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFY-LQAV---HNSACRK-LTKELCDVIEDYS--LV----N--- 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~-~~~~---~~~~~~~-~~~~ig~V~Q~~~--l~----~--- 67 (143)
++-++|+|.|||||||||+||++-+.|++|+|.+.-..- ..++ +....+. +|...|+|.|+|. +- .
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~N 111 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGN 111 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCc
Confidence 356899999999999999999999999999998743210 0012 2222222 3456999999975 11 0
Q ss_pred ----cccCCh----hhHHHHHHHHHHhhhh-----C-CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 68 ----FSTLDI----QDKESVAKLVKLIDKS-----N-GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 68 ----~~~~~~----~~~~~~~~~l~~l~~~-----~-~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.+.... +-.+.+.++|+++++. + ...+|||.|||+.|||-|+..|++.|+| ||+-.+|..+|-
T Consensus 112 iGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMD---EPTGGLDVSVQA 188 (258)
T COG4107 112 IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD---EPTGGLDVSVQA 188 (258)
T ss_pred cchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEec---CCCCCcchhhHH
Confidence 000111 2234567788888763 2 2237999999999999999999999999 999999999987
Q ss_pred hcc
Q 032336 134 KYI 136 (143)
Q Consensus 134 ~~~ 136 (143)
+..
T Consensus 189 RLL 191 (258)
T COG4107 189 RLL 191 (258)
T ss_pred HHH
Confidence 654
No 365
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=5.2e-22 Score=139.63 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=92.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cc-----ccccC---C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LV-----NFSTL---D 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~-----~~~~~---~ 72 (143)
++.+-+||||||||||||..++|+. |.+|+|.++|. ++..++..+++++.+|+.|+.. .| .+.+. .
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~----~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~ 99 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQ----PLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD 99 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCc----chhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch
Confidence 4567799999999999999999997 68899999996 7777888899999999988743 22 12222 2
Q ss_pred hhhHHHHHHHHHHhhhhCCC---c--CCchhHHHHHHHHHHhh-------cCCcccccCCccccchhhhhhh
Q 032336 73 IQDKESVAKLVKLIDKSNGY---I--FAGMDASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~~~~---~--lSgGe~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~~~~ 132 (143)
++....+.++...+++.+.. . +||||.|||.+|....+ ..++|++| ||++.+|..-+
T Consensus 100 ~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD---EP~~~LDvAQ~ 168 (248)
T COG4138 100 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD---EPMNSLDVAQQ 168 (248)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec---CCCcchhHHHH
Confidence 23334455555555553322 2 69999999999988876 33699999 99999987543
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.5e-20 Score=137.79 Aligned_cols=121 Identities=15% Similarity=0.032 Sum_probs=88.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc------ccccC-Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV------NFSTL-DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~------~~~~~-~~~ 74 (143)
+..++|||+||||||||||+|+|.++|++|+|.+.|..- . -+.-..|+-||-...- .+... .++
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~-----~----li~lg~Gf~pelTGreNi~l~~~~~G~~~~e 123 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA-----P----LIELGAGFDPELTGRENIYLRGLILGLTRKE 123 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe-----h----hhhcccCCCcccchHHHHHHHHHHhCccHHH
Confidence 467999999999999999999999999999999999521 0 0112245444433211 11122 235
Q ss_pred hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 75 DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
..+.++++.+..++. +.++ +|-|.+-|++++-|...+|++|++| |-++=-|...++|
T Consensus 124 i~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD---EvlavGD~~F~~K 185 (249)
T COG1134 124 IDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD---EVLAVGDAAFQEK 185 (249)
T ss_pred HHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe---hhhhcCCHHHHHH
Confidence 566778888776652 4444 6889999999999999999999999 8888777777764
No 367
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=2.9e-21 Score=143.22 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=78.3
Q ss_pred eeEEEECCCCCcHHHHHHHHh----------------CCcccCCc--------eEEEcceeehhhhccccHHHHHhhcch
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS----------------QFLSLIGS--------NICCSNVFYLQAVHNSACRKLTKELCD 58 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~----------------g~~~~~~G--------~i~~~g~~~~~~~~~~~~~~~~~~ig~ 58 (143)
..++|+||||||||||+++|+ +++.+.+| +|.+++..-...... ....+++.+++
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~-~~~~i~r~ig~ 102 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDK-EEVRLRRTIGL 102 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCC-CEEEEEEEEEC
Confidence 368899999999999999998 44555566 555544200000000 01123456888
Q ss_pred hcccccccccccCChhhHHHHHHHHHHhhh-----------------------h--CCCcCCchhHHHHHHHHHHhh---
Q 032336 59 VIEDYSLVNFSTLDIQDKESVAKLVKLIDK-----------------------S--NGYIFAGMDASAVEFSKIAVR--- 110 (143)
Q Consensus 59 V~Q~~~l~~~~~~~~~~~~~~~~~l~~l~~-----------------------~--~~~~lSgGe~qrv~ia~al~~--- 110 (143)
++|++.++... ... +.+..++..+++ . ....+||||+||++||+|++.
T Consensus 103 ~~~~~~l~~~~-~t~---~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~ 178 (243)
T cd03272 103 KKDEYFLDKKN-VTK---NDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKC 178 (243)
T ss_pred CCCEEEECCeE-cCH---HHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhcc
Confidence 88876654211 111 112222222221 1 112279999999999999974
Q ss_pred -cCCcccccCCccccchhhhhhhhhc
Q 032336 111 -NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 111 -~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+++++| ||++.+|....+.+
T Consensus 179 ~~~~illlD---Ep~~~ld~~~~~~~ 201 (243)
T cd03272 179 DPAPFYLFD---EIDAALDAQYRTAV 201 (243)
T ss_pred CCCCEEEEE---CCccCCCHHHHHHH
Confidence 58999999 99999999887754
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-20 Score=144.63 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=101.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--CChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST--LDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~--~~~~~~~~~ 79 (143)
++.+.|+|.|||||||+++++.|+++|++|+|+++|+ +++..+..+-|+-++-||-|..+|.... ......+.+
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~----pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i 424 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK----PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLI 424 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc----cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHH
Confidence 4678899999999999999999999999999999996 6677788888888999999999885321 122345678
Q ss_pred HHHHHHhhhh------CCCc----CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 80 AKLVKLIDKS------NGYI----FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 80 ~~~l~~l~~~------~~~~----lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+..|+++.++ ++.. +|-|||+|+++--|+..+-+++++| |=-+++|+...
T Consensus 425 ~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~D---EWAADQDPaFR 484 (546)
T COG4615 425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLD---EWAADQDPAFR 484 (546)
T ss_pred HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEee---hhhccCChHHH
Confidence 8888888764 2222 5899999999999999999999999 66677776554
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=2.1e-20 Score=151.81 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=88.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc-------CC-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST-------LD- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~-------~~- 72 (143)
+..+||+||||+|||||||+|+|...|.+|+|.+... -.+||+.|+.. +....+ ..
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~---------------v~igyf~Q~~~~l~~~~t~~d~l~~~~~ 412 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET---------------VKIGYFDQHRDELDPDKTVLEELSEGFP 412 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------------eEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence 3578999999999999999999999999999986531 13788888863 221111 11
Q ss_pred hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
......++..|..++.. ...+ +|||||.|+.+|+.+..+|.+|+|| |||-.||.+..+
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD---EPTNhLDi~s~~ 476 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD---EPTNHLDIESLE 476 (530)
T ss_pred cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc---CCCccCCHHHHH
Confidence 11145677788887652 2333 8999999999999999999999999 999999988766
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.82 E-value=3e-20 Score=159.02 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=97.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------------
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------------ 70 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------------ 70 (143)
+..+++|||||||||++++|.|..+|++|+++++|..+. ......+.++.+||.||+..++...+
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~---~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr 668 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDIT---VSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR 668 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccc---cccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc
Confidence 567899999999999999999999999999999886322 12233457788999999977653222
Q ss_pred -CChhh-HHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 71 -LDIQD-KESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 71 -~~~~~-~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
....+ .+.++.+++.+++. +..+ +|||+++|+.+|.|++.+|++++|| ||++..|+..+.
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD---EPstGmDP~arr 735 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD---EPSTGLDPKARR 735 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec---CCCCCCCHHHHH
Confidence 22222 34567778877763 3333 6999999999999999999999999 999999986554
No 371
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=1.1e-20 Score=141.04 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=87.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccc--cHHHHHhhcchhccccc---------ccc----
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNS--ACRKLTKELCDVIEDYS---------LVN---- 67 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~--~~~~~~~~ig~V~Q~~~---------l~~---- 67 (143)
.++|+||||||||||+++|++++.++ .|++++.+. .++-.. ........+++++|++. +.+
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~---~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL---QDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCH---HHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 47899999999999999999999876 568877664 111110 00112346889999842 110
Q ss_pred -----cc----c-C--ChhhHHHHHHHHHHhhhh-----------------------CCCc--CCchhHHHHHHHHHHh-
Q 032336 68 -----FS----T-L--DIQDKESVAKLVKLIDKS-----------------------NGYI--FAGMDASAVEFSKIAV- 109 (143)
Q Consensus 68 -----~~----~-~--~~~~~~~~~~~l~~l~~~-----------------------~~~~--lSgGe~qrv~ia~al~- 109 (143)
.. . . .....+.+.++++.+++. +.++ +|+||+||+++|+|++
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 00 0 1 112346777888888763 1222 6999999999999998
Q ss_pred ---hcCCcccccCCccccchhhhhhhhhcc
Q 032336 110 ---RNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 110 ---~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+|+++++| ||++.++...++.+.
T Consensus 184 ~~~~~~~illlD---EPt~~ld~~~~~~~~ 210 (251)
T cd03273 184 LLFKPAPMYILD---EVDAALDLSHTQNIG 210 (251)
T ss_pred hhccCCCEEEEe---CCCcCCCHHHHHHHH
Confidence 478999999 999999988777543
No 372
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.80 E-value=7.3e-20 Score=149.08 Aligned_cols=115 Identities=11% Similarity=0.182 Sum_probs=86.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccccC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFSTL 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~~~ 71 (143)
+..+-|.||||||||||+|+|+|+.+..+|+|.+-.. ..+-|+||.|.+- |....
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~---------------~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD---------------SALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC---------------CceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 4567899999999999999999999999999864310 1256778877642 11111
Q ss_pred ChhhHHHHHHHHHHhhhh---------C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 DIQDKESVAKLVKLIDKS---------N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~---------~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. -..+.+.++|.++++. + ..++|+|||||+++||.+.++|+++++| |.|+-+|.+.+-++
T Consensus 484 ~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD---EATsALDe~~e~~l 554 (604)
T COG4178 484 D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD---EATSALDEETEDRL 554 (604)
T ss_pred C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe---cchhccChHHHHHH
Confidence 1 2234567777777642 2 2237999999999999999999999999 99999998776543
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.78 E-value=1.2e-19 Score=132.62 Aligned_cols=123 Identities=15% Similarity=-0.007 Sum_probs=75.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc-ccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----ccccCChhhHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL-SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----NFSTLDIQDKE 77 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----~~~~~~~~~~~ 77 (143)
..++|+||||||||||+++|++.+ .+..+...... .............++++||+.... .......++..
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-----~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~ 103 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-----LRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFT 103 (213)
T ss_pred CEEEEECCCCCCHHHHHHHheeeEecCccccccchh-----HHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHH
Confidence 478999999999999999999643 33333333211 001111123345688888886532 11111212111
Q ss_pred HHHHHHHHh---hhhCCCc--CCchhHHHHHHHHHHhh----------cCCcccccCCccccchhhhhhhhh
Q 032336 78 SVAKLVKLI---DKSNGYI--FAGMDASAVEFSKIAVR----------NVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 78 ~~~~~l~~l---~~~~~~~--lSgGe~qrv~ia~al~~----------~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
... .++.. ...+... +|+||+||+++|+|++. +|+++++| ||++.+|....+.
T Consensus 104 ~~~-~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD---Ep~~~lD~~~~~~ 171 (213)
T cd03279 104 RIV-LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID---EGFGTLDPEALEA 171 (213)
T ss_pred Hhh-hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe---CCcccCCHHHHHH
Confidence 110 12222 1223333 79999999999999985 56899999 9999999877664
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=2.9e-19 Score=155.90 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC-Chhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL-DIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~-~~~~ 75 (143)
+..+||+||-|||||+||..|.|.++..+|+|.++|. ++||+|.+.++.-. .+ .+-+
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----------------iaYv~Q~pWI~ngTvreNILFG~~~d 609 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-----------------VAYVPQQPWIQNGTVRENILFGSPYD 609 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------------EEEeccccHhhCCcHHHhhhcCcccc
Confidence 4578999999999999999999999999999999883 89999999876210 01 1223
Q ss_pred HHHHHHHHHHhhh----h------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 76 KESVAKLVKLIDK----S------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 76 ~~~~~~~l~~l~~----~------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
.++-+++++.+.+ . .+.-+|||||||+++|||.-++.+++|||+ |++-+|.-+...+++
T Consensus 610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD---plSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD---PLSAVDAHVGKHIFE 684 (1381)
T ss_pred HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC---cchhhhHhhhHHHHH
Confidence 3344444444321 1 233379999999999999999999999994 567777766665554
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=7.2e-20 Score=134.91 Aligned_cols=53 Identities=4% Similarity=-0.041 Sum_probs=42.8
Q ss_pred HHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336 80 AKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 80 ~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.++.+++. +.++ +||||+|||++|||++.+| +++++| ||++.+|......+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllD---EPt~gLD~~~~~~l 178 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHPRDNDRL 178 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEe---CCccCCCHHHHHHH
Confidence 4567776653 2233 7999999999999999998 599999 99999999877644
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.75 E-value=3.7e-19 Score=129.34 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=76.0
Q ss_pred eEEEECCCCCcHHHHHHHHh----CCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-----ccccccCChh
Q 032336 4 GQVVIGPPGSGKTTYCNGMS----QFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-----LVNFSTLDIQ 74 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~----g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-----l~~~~~~~~~ 74 (143)
.++|+|||||||||||++|. |..+|+.|.+..+. +.... ...+..++++||+.. +....+...+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~-----~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~ 96 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP-----KLIRE--GEVRAQVKLAFENANGKKYTITRSLAILEN 96 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH-----HHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence 57899999999999999994 88888887765111 11111 123356888999872 1110010000
Q ss_pred ----hHHHHHHHHHHhhhhCCCcCCchhHHH------HHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 75 ----DKESVAKLVKLIDKSNGYIFAGMDASA------VEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 75 ----~~~~~~~~l~~l~~~~~~~lSgGe~qr------v~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
....+.+.+ + .....+|+||+|| +++|+|++.+|+++++| ||++.+|....+
T Consensus 97 ~~~~~~~~~~~~~---~-~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD---EP~~~LD~~~~~ 158 (204)
T cd03240 97 VIFCHQGESNWPL---L-DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD---EPTTNLDEENIE 158 (204)
T ss_pred eeeechHHHHHHH---h-cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc---CCccccCHHHHH
Confidence 011122112 1 1233479999996 78999999999999999 999999987766
No 377
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=1.9e-18 Score=128.77 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=78.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEccee-ehhh--hccccHHHHHhhcchhcccccc--cc---------cc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVF-YLQA--VHNSACRKLTKELCDVIEDYSL--VN---------FS 69 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~-~~~~--~~~~~~~~~~~~ig~V~Q~~~l--~~---------~~ 69 (143)
.++|+||||||||||+.+|++++.+..|++...+.. +... ....+.....-.+.+..|+... +. +.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 478999999999999999999998777777644310 0000 0000001111122333333221 10 00
Q ss_pred -cCChhhHHHHHHHHHHhhhhC-------------------------C--CcCCchhHHHHHHHHHHhhc----CCcccc
Q 032336 70 -TLDIQDKESVAKLVKLIDKSN-------------------------G--YIFAGMDASAVEFSKIAVRN----VDWDYY 117 (143)
Q Consensus 70 -~~~~~~~~~~~~~l~~l~~~~-------------------------~--~~lSgGe~qrv~ia~al~~~----p~~lll 117 (143)
.-.......++++++.+++.. . ..+|+||+||++||++++.+ |+++++
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 001122344567777766520 0 22699999999999999975 899999
Q ss_pred cCCccccchhhhhhhhhc
Q 032336 118 RYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 118 d~~~~~~~~~~~~~~~~~ 135 (143)
| ||++.+|...++.+
T Consensus 184 D---EPt~~LD~~~~~~l 198 (247)
T cd03275 184 D---EVDAALDNTNVGKV 198 (247)
T ss_pred e---cccccCCHHHHHHH
Confidence 9 99999998766643
No 378
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=1.9e-18 Score=125.02 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=76.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEc--ceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS--NVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL 82 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~--g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~ 82 (143)
.+|+||||||||||+..|.-.+ .|+.... |..+ .++... ..-...+.+++|+..++.. .........++++
T Consensus 24 ~~i~G~NGsGKStll~ai~~~l---~~~~~~~~r~~~~-~~~i~~--~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~ 96 (198)
T cd03276 24 NFIVGNNGSGKSAILTALTIGL---GGKASDTNRGSSL-KDLIKD--GESSAKITVTLKNQGLDAN-PLCVLSQDMARSF 96 (198)
T ss_pred EEEECCCCCcHHHHHHHHHHHh---cCCcccccccccH-HHHhhC--CCCeEEEEEEEEcCCccCC-cCCHHHHHHHHHH
Confidence 5899999999999999887433 2332211 2100 011000 0112346677777665542 1122223566677
Q ss_pred HHHhhhhCCCc--CCchhHHHHHHHHHH----hhcCCcccccCCccccchhhhhhhhhc
Q 032336 83 VKLIDKSNGYI--FAGMDASAVEFSKIA----VRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 83 l~~l~~~~~~~--lSgGe~qrv~ia~al----~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
++.-+.....+ +|+||+||++||+|+ +.+|+++++| ||++.+|...+..+
T Consensus 97 l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD---EP~~glD~~~~~~~ 152 (198)
T cd03276 97 LTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD---EFDVFMDMVNRKIS 152 (198)
T ss_pred hccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEec---CcccccCHHHHHHH
Confidence 76622233333 799999999999999 5899999999 99999998876543
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=4.8e-18 Score=135.83 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=81.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--c--ccCC-hhhHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--F--STLD-IQDKES 78 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--~--~~~~-~~~~~~ 78 (143)
-+++|||||||||||||++.|.+.|..|.|.-.-. .......++.+..- +....+ + ..+. ....+.
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------~~~~~y~Qh~~e~l-dl~~s~le~~~~~~~~~~~~e~ 488 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------NKLPRYNQHLAEQL-DLDKSSLEFMMPKFPDEKELEE 488 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhcccccccccccccc--------ccchhhhhhhHhhc-CcchhHHHHHHHhccccchHHH
Confidence 47999999999999999999999999999974321 11111122222100 011100 0 0112 344567
Q ss_pred HHHHHHHhhhh-C---CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 79 VAKLVKLIDKS-N---GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 79 ~~~~l~~l~~~-~---~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
+..++.++++. + ... +|.|||.||.+|+++...|.+|+|| |||..+|.....
T Consensus 489 ~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD---EPtnhLDi~tid 546 (614)
T KOG0927|consen 489 MRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD---EPTNHLDIETID 546 (614)
T ss_pred HHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec---CCCcCCCchhHH
Confidence 88899998874 2 111 6999999999999999999999999 999999876544
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=1.5e-18 Score=126.87 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=70.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-------------
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------------- 70 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------------- 70 (143)
.++|+|||||||||++++|. ++.|. +.. ...++.+++++|+..+.+..+
T Consensus 27 i~~ivGpNGaGKSTll~~i~----------~~~G~----~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSML----------FVFGF----RAS----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIID 88 (212)
T ss_pred eEEEECCCCCCHHHHHHHHH----------HHhcc----CHH----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence 58999999999999999997 22332 111 111245888888765432110
Q ss_pred --------CChhhHH---HHHHHHHHhhhh---CCC--cCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhh
Q 032336 71 --------LDIQDKE---SVAKLVKLIDKS---NGY--IFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 --------~~~~~~~---~~~~~l~~l~~~---~~~--~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~ 130 (143)
....... ...++++.+++. +.. .+|+||+||+++|+|++. .|+++++| ||++.+|..
T Consensus 89 ~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD---EPt~gLD~~ 165 (212)
T cd03274 89 KPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD---EIDAALDFR 165 (212)
T ss_pred HHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc---CCCcCCCHH
Confidence 0000000 012333333432 222 279999999999999974 47999999 999999988
Q ss_pred hhhhc
Q 032336 131 VQEKY 135 (143)
Q Consensus 131 ~~~~~ 135 (143)
..+.+
T Consensus 166 ~~~~l 170 (212)
T cd03274 166 NVSIV 170 (212)
T ss_pred HHHHH
Confidence 77643
No 381
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.68 E-value=6.7e-17 Score=129.31 Aligned_cols=113 Identities=10% Similarity=0.175 Sum_probs=79.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccc---
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFS--- 69 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~--- 69 (143)
-++-|+||||||||+|+|+|.|+.+...|...+-- ..++-|+||.|..- |..
T Consensus 509 ~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~---------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 509 MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR---------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred ceEEEECCCCccHHHHHHHHhccCcccCCeeecCC---------------CcceEeccCCCccCcCcccceeecCCcHHH
Confidence 35679999999999999999999998888775311 12389999988642 110
Q ss_pred ----cCChhhHHHHHHHHHHhhh---h----------C-CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 70 ----TLDIQDKESVAKLVKLIDK---S----------N-GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 70 ----~~~~~~~~~~~~~l~~l~~---~----------~-~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.+.+++ .+.+|..+++ . + ..++|||||||+++||.+-+.|+.-+|| |-++-.-.++
T Consensus 574 ~~~kg~~d~d---L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD---EcTsAvsidv 647 (728)
T KOG0064|consen 574 MKRKGYTDQD---LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD---ECTSAVSIDV 647 (728)
T ss_pred HHhcCCCHHH---HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh---hhhcccccch
Confidence 122222 3334444332 1 1 2237999999999999999999999999 8887666555
Q ss_pred hhhcc
Q 032336 132 QEKYI 136 (143)
Q Consensus 132 ~~~~~ 136 (143)
.-+++
T Consensus 648 E~~i~ 652 (728)
T KOG0064|consen 648 EGKIF 652 (728)
T ss_pred HHHHH
Confidence 54544
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.2e-17 Score=142.56 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=90.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcc--cCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
.+||+|+|||||||||++|+|-.. ..+|+|.++|. +... ...+|.+|||-|+....+..+
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~----p~~q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~L 891 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF----PKDQ---ETFARVSGYVEQQDIHSPELTVRESLRFSAAL 891 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe----eCch---hhhccccceeecccccCcccchHHHHHHHHHH
Confidence 489999999999999999999642 24688899996 2221 446788999999764322111
Q ss_pred -----CCh-hhHHHHHHHHHHhhhh---------CCCcCCchhHHHHHHHHHHhhcC-CcccccCCccccchhhhhhh
Q 032336 71 -----LDI-QDKESVAKLVKLIDKS---------NGYIFAGMDASAVEFSKIAVRNV-DWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 -----~~~-~~~~~~~~~l~~l~~~---------~~~~lSgGe~qrv~ia~al~~~p-~~llld~~~~~~~~~~~~~~ 132 (143)
+.. +..+.++++++.+++. .+.-+|..||+|+.||--|+.+| -+|+|| ||++.||-...
T Consensus 892 Rlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD---EPTSGLDsqaA 966 (1391)
T KOG0065|consen 892 RLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD---EPTSGLDSQAA 966 (1391)
T ss_pred cCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec---CCCCCccHHHH
Confidence 222 3347789999988763 23337899999999999999999 899999 99999997654
No 383
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.9e-17 Score=127.45 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=81.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cc------cc--ccCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LV------NF--STLD 72 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~------~~--~~~~ 72 (143)
--+||+||||.||||||++|.|-+.|..|+.+-+. |-+||+.-|+.. |. .+ ..+.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh---------------rL~iG~FdQh~~E~L~~Eetp~EyLqr~FN 678 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH---------------RLRIGWFDQHANEALNGEETPVEYLQRKFN 678 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc---------------eeeeechhhhhHHhhccccCHHHHHHHhcC
Confidence 35899999999999999999999999999876332 123666555432 11 00 0011
Q ss_pred hhhHHHHHHHHHHhhhhCCC------cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 73 IQDKESVAKLVKLIDKSNGY------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~~~~------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
-..+.++..|-.+++.... -+||||+.||++|...+..|++|+|| ||+-+|+.+.
T Consensus 679 -lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD---EPTNNLDIES 739 (807)
T KOG0066|consen 679 -LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD---EPTNNLDIES 739 (807)
T ss_pred -CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec---CCCCCcchhh
Confidence 1234567778888875322 17999999999999999999999999 9999998754
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.65 E-value=3.7e-16 Score=123.34 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=70.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC---------C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------D 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------~ 72 (143)
++.++++||||-||||++++|+|.++|++|. . .+ + +++|=||-...-...++ .
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~------~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-ED------L----------KVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC-C-cc------c----------eEeecceeecCCCCCcHHHHHHHhhhh
Confidence 4678999999999999999999999999997 1 11 1 14444443211000000 0
Q ss_pred -hhhHHHHHHHHHHhh---hhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 73 -IQDKESVAKLVKLID---KSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 73 -~~~~~~~~~~l~~l~---~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
-.+.-.-.++++-+. +.++.+ +||||-|||+||.+|..++++.++| ||.+-||.+
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD---EPSA~LDvE 489 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD---EPSAYLDVE 489 (591)
T ss_pred hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec---CchhhccHH
Confidence 000011122222232 234444 7999999999999999999999999 888877764
No 385
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.65 E-value=4e-16 Score=125.74 Aligned_cols=115 Identities=10% Similarity=0.191 Sum_probs=82.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc----------ccccC--
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV----------NFSTL-- 71 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~----------~~~~~-- 71 (143)
.+-|.||||||||+|||+++|+.+..+|++..-.. ..+ +.+-||||.|... |....
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-------~~~-----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~ 530 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------GGP-----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDM 530 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-------CCC-----CceEEecCCCCccccchhheeeccCccccc
Confidence 46689999999999999999999999999974321 000 3478999987632 21110
Q ss_pred -C-hhhHHHHHHHHHHhhhh---------C-------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 72 -D-IQDKESVAKLVKLIDKS---------N-------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 72 -~-~~~~~~~~~~l~~l~~~---------~-------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
. -.+.+.+.+.|+.+.+. + ..++|+|||||+++||.+-++|++-+|| |-|+-+.-++..
T Consensus 531 ~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD---E~TSAv~~dvE~ 607 (659)
T KOG0060|consen 531 DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD---ECTSAVTEDVEG 607 (659)
T ss_pred cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee---chhhhccHHHHH
Confidence 0 11234566666665431 2 1237999999999999999999999999 999888766544
No 386
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=5e-16 Score=116.67 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc---CCcccccCCccccchhhhhhhhhc
Q 032336 78 SVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN---VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 78 ~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~---p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.++++.+++. ++.. +||||+||+.+|++|+.+ |+++++| ||++.|+....+++
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD---EPtsgLD~~~~~~l 211 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD---EPTTGLHFHDVKKL 211 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE---CCCCCCCHHHHHHH
Confidence 455566666653 2322 799999999999999996 7999999 99999998887744
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.57 E-value=4e-15 Score=119.30 Aligned_cols=128 Identities=15% Similarity=0.050 Sum_probs=74.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc--ceeehh-hhc-----cccHHHHHhhcchhcccccccc-------
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS--NVFYLQ-AVH-----NSACRKLTKELCDVIEDYSLVN------- 67 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~--g~~~~~-~~~-----~~~~~~~~~~ig~V~Q~~~l~~------- 67 (143)
...+|||||||||||+|++|.|-..|..-++-+- ...+.. ... -+.....+.++.+...+.....
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~ 181 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDE 181 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhH
Confidence 4679999999999999999999998876665331 110000 000 0001112222333222211110
Q ss_pred c------cc-C-ChhhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 68 F------ST-L-DIQDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 68 ~------~~-~-~~~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
+ .. . ...-..++.++|..++- ....+ +|||++.|+++||+|.++|++||+| |||.-||.+...
T Consensus 182 l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD---EPtnhLDleA~~ 258 (614)
T KOG0927|consen 182 LDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD---EPTNHLDLEAIV 258 (614)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec---CCccCCCHHHHH
Confidence 0 00 0 00111223333333321 23333 7999999999999999999999999 999999987654
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=9.9e-15 Score=116.46 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=69.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-------hhcchhcccccccccccCChhh
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-------KELCDVIEDYSLVNFSTLDIQD 75 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-------~~ig~V~Q~~~l~~~~~~~~~~ 75 (143)
+..+|+|+||+|||||||+|+. |.|...... +.+.......+. ...-++.++..+.. ..+-
T Consensus 107 rRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--qE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~----~~~l 174 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--QEVRGDDTEALQSVLESDTERLDFLAEEKELLA----GLTL 174 (582)
T ss_pred cccceeCCCCCcHHHHHHHHHh------cCcCccCch--hheeccchHHHhhhhhccHHHHHHHHhhhhhhc----cchH
Confidence 4568999999999999999987 444322210 001000000000 00122333322210 0011
Q ss_pred HHHHHHHHHHhhh----h--CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 76 KESVAKLVKLIDK----S--NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 76 ~~~~~~~l~~l~~----~--~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.+...++|.-++. . ....+|||=|-|+++|||+-.+|++|||| ||+-.||.-..
T Consensus 175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD---EPTNhLDv~av 234 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD---EPTNHLDVVAV 234 (582)
T ss_pred HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec---CCcccchhHHH
Confidence 2233336666653 2 33337999999999999999999999999 99999987654
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.6e-14 Score=113.99 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhccccc---ccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYS---LVN---------- 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~---l~~---------- 67 (143)
++.++|.|-=|||+|=|+++|.|..++.+|+|.++|+. +...++ ..++..++|||.+.. ++.
T Consensus 285 GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~----v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l 360 (500)
T COG1129 285 GEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP----VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL 360 (500)
T ss_pred CcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE----ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence 57899999999999999999999999999999999973 333333 456778999998843 221
Q ss_pred -----cc---cCC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 68 -----FS---TLD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 68 -----~~---~~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+. .+. ....+.++++.+.+++. ++.+ +|||.||+|.|||.|+.+|++|++| |||-..|...-
T Consensus 361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD---EPTRGIDVGAK 437 (500)
T COG1129 361 ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILD---EPTRGIDVGAK 437 (500)
T ss_pred HhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEEC---CCCcCcccchH
Confidence 00 111 23344566777777663 2222 7999999999999999999999999 99998886543
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.48 E-value=1e-14 Score=115.29 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=73.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHh-hcc--------------hhcccccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTK-ELC--------------DVIEDYSLVN 67 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig--------------~V~Q~~~l~~ 67 (143)
.-++|+||||-||||.+|+|+|.+.|.=|+-. +. +-+..-.+..|. .+. .=+|-..+.|
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~p----p~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE--DP----PSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CC----CCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 45899999999999999999999999877642 10 001000111110 000 0011111111
Q ss_pred c---ccC----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 68 F---STL----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 68 ~---~~~----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
. .++ .+ ...-..+++.+++++. ++.+ +||||-|||+||.++.++.+++++| ||.+-||..
T Consensus 175 k~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FD---EpsSyLDi~ 247 (591)
T COG1245 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFD---EPSSYLDIR 247 (591)
T ss_pred HHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEc---CCcccccHH
Confidence 0 000 01 1113456666776653 4444 7999999999999999999999999 888877754
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.48 E-value=1.8e-14 Score=102.74 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=35.0
Q ss_pred CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||+||+++|++++ .+|+++++| ||++.++....+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilD---Ep~~~LD~~~~~~i 137 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLD---EIDAALDPTNRRRV 137 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence 7999999999999997 589999999 99999998877643
No 392
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.47 E-value=6.6e-14 Score=101.32 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=58.9
Q ss_pred eEEEECCCCCcHHHHHHHHh-CCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMS-QFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~-g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
.++|.||||||||||||+|+ ..+.+..| .+.... ...++|+.|....+ ..+ +.+.+
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~---------------~~~~~~~~~~~~~l-----g~~--~~l~~ 87 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE---------------GSSLPVFENIFADI-----GDE--QSIEQ 87 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc---------------cccCcCccEEEEec-----Cch--hhhhc
Confidence 48999999999999999998 22222222 111000 01244444443211 111 11111
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
-+ ..+|+|++|++.+++++ .+|+++++| ||++.++.....
T Consensus 88 ~~--------s~fs~g~~~~~~i~~~~-~~p~llllD---Ep~~glD~~~~~ 127 (200)
T cd03280 88 SL--------STFSSHMKNIARILQHA-DPDSLVLLD---ELGSGTDPVEGA 127 (200)
T ss_pred Cc--------chHHHHHHHHHHHHHhC-CCCcEEEEc---CCCCCCCHHHHH
Confidence 11 12468999999999885 799999999 999999987654
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=4.4e-14 Score=102.55 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=88.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc----CCceEEEcceeehhhhccccHHHHH----hhcchhccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL----IGSNICCSNVFYLQAVHNSACRKLT----KELCDVIEDYSLV------- 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~----~~ig~V~Q~~~l~------- 66 (143)
++.-+++|.||||||-+.|.|+|..+- +.....|++. ++-..++++.| +.|+++||+|.-.
T Consensus 33 GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i----dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i 108 (330)
T COG4170 33 GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI----DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc----hhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence 456789999999999999999998753 4555666665 33344444444 4578999998621
Q ss_pred --------cccc--------CChhhHHHHHHHHHHhhhh--------CCCcCCchhHHHHHHHHHHhhcCCcccccCCcc
Q 032336 67 --------NFST--------LDIQDKESVAKLVKLIDKS--------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSF 122 (143)
Q Consensus 67 --------~~~~--------~~~~~~~~~~~~l~~l~~~--------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~ 122 (143)
++.+ +.- ...++.++|.++|+. ..|.+..||.|.|.||.|+|..|++|+-| |
T Consensus 109 G~QlIq~IP~wTfkgrWWq~F~W-rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD---E 184 (330)
T COG4170 109 GRQLIQNIPAWTYKGRWWQRFGW-RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD---E 184 (330)
T ss_pred HHHHHhhCccccccchHhhhhch-hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc---C
Confidence 1111 111 234677788888763 23336789999999999999999999999 8
Q ss_pred ccchhhhhhhh
Q 032336 123 HLFQSLAEVQE 133 (143)
Q Consensus 123 ~~~~~~~~~~~ 133 (143)
|+-..+.-++-
T Consensus 185 PTN~~e~~Tq~ 195 (330)
T COG4170 185 PTNSMEPTTQA 195 (330)
T ss_pred CCcccCccHHH
Confidence 88877766654
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.44 E-value=1.2e-13 Score=99.80 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=79.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-----ccc--HHHHHhhcchhc---cccccc-cc--ccC
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-----NSA--CRKLTKELCDVI---EDYSLV-NF--STL 71 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~~~--~~~~~~~ig~V~---Q~~~l~-~~--~~~ 71 (143)
.-++|.||||||||||+|+|-.-...|.|.+.|.....+.. ... -.++.+..++-- =+..+- .. ..+
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 45899999999999999999887788999998863221100 000 012333222211 111100 00 011
Q ss_pred ChhhHHHHHHHHHHhhhhCCCc---CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 72 DIQDKESVAKLVKLIDKSNGYI---FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~~~~~---lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.-.+.++-++++..+++..++- .|-||++||.||+-|..--++|||| |-+-+||.-..
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLD---EVTVDLDVlAR 183 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLD---EVTVDLDVLAR 183 (291)
T ss_pred cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEee---eeEeehHHHHH
Confidence 1223355566777777655444 4899999999999999999999999 88888876443
No 395
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.43 E-value=8.1e-13 Score=99.77 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=46.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-cHHHHHhhcchhcccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-ACRKLTKELCDVIEDY 63 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ig~V~Q~~ 63 (143)
..++|+||||||||||+++|+|+++|++|+|.++|+.+ ... ...+++..+++++|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v----~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV----GIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe----ecchhHHHHHHHhccccccc
Confidence 46899999999999999999999999999999999743 222 2356666788888854
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.5e-13 Score=107.73 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=83.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc--------cc--cCCh
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--------FS--TLDI 73 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--------~~--~~~~ 73 (143)
.++++|+||+||||++|++.+-+.|..|.+.+.+ |.+++|.+|...-+. ++ ...-
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG 456 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPG 456 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeecc---------------cceecchhHhhhhHHHHHhHHHHHHHHhCCC
Confidence 3679999999999999999999999999886554 234777777643110 00 0101
Q ss_pred hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 74 QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
...+.++..+..+|+. .+.. +||||+-||++|.....+|-+|+|| ||+--||.+...
T Consensus 457 ~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLD---EPTNhLD~dsl~ 519 (582)
T KOG0062|consen 457 KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLD---EPTNHLDRDSLG 519 (582)
T ss_pred CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEec---CCCccccHHHHH
Confidence 1234567778888763 3333 7999999999999999999999999 999999887654
No 397
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.39 E-value=1.4e-13 Score=96.61 Aligned_cols=92 Identities=14% Similarity=-0.001 Sum_probs=61.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccCChhhHHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTLDIQDKESVAKL 82 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~~~~~~~~~~~~ 82 (143)
.+.|+|||||||||+++.+....-...|.+.... .. +.+ +++.....+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-----~~----------~~g~~~~~~~~~~---------------- 71 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-----GV----------KAGCIVAAVSAEL---------------- 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-----cc----------cCCCcceeeEEEE----------------
Confidence 6789999999999999998776655544443211 00 111 122111000
Q ss_pred HHHhhhhCCCcCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhh
Q 032336 83 VKLIDKSNGYIFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 83 l~~l~~~~~~~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
+....-+|+||+||+.+|++++. +|+++++| ||+..++......
T Consensus 72 -----i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllD---Ep~~gld~~~~~~ 119 (162)
T cd03227 72 -----IFTRLQLSGGEKELSALALILALASLKPRPLYILD---EIDRGLDPRDGQA 119 (162)
T ss_pred -----ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEe---CCCCCCCHHHHHH
Confidence 00001178999999999999997 78999999 9999988876553
No 398
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=2.4e-12 Score=93.83 Aligned_cols=38 Identities=5% Similarity=-0.010 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHhhcCCcccccCCcccc-----chhhhhhhhhcc
Q 032336 96 GMDASAVEFSKIAVRNVDWDYYRYPSFHL-----FQSLAEVQEKYI 136 (143)
Q Consensus 96 gGe~qrv~ia~al~~~p~~llld~~~~~~-----~~~~~~~~~~~~ 136 (143)
|-+++++.||++++.+|+++++| ||+ +.++...++.+.
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ld---Ep~~~~~~~~ld~~~~~~~~ 197 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVG---APALAPEEIQIDPELVAQAE 197 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecC---CcccCCCccccCHHHHHHHH
Confidence 34889999999999999999999 999 999988877543
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.36 E-value=4.1e-12 Score=101.20 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=97.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhccccc---cc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDYS---LV----------- 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~---l~----------- 66 (143)
++.++|.|-.|-|-+.|+..|+|+.++.+|+|.++|.++ +...+..+++ ..++|||++.. +.
T Consensus 284 GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v---~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL 360 (501)
T COG3845 284 GEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV---LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVL 360 (501)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec---cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhh
Confidence 578999999999999999999999999999999999732 2344555555 45999999853 11
Q ss_pred ------cccc---CC-hhhHHHHHHHHHHhhhhC------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 67 ------NFST---LD-IQDKESVAKLVKLIDKSN------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 67 ------~~~~---~~-~~~~~~~~~~l~~l~~~~------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
++.. .. ..-...+.++++.++... ...+|||++|++-+||-+..+|++|+.. .|+..+|..
T Consensus 361 ~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~---qPTrGLDvg 437 (501)
T COG3845 361 GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAA---QPTRGLDVG 437 (501)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEc---CCCccccHH
Confidence 0111 11 123456777888887641 2227999999999999999999999999 899999988
Q ss_pred hhhh
Q 032336 131 VQEK 134 (143)
Q Consensus 131 ~~~~ 134 (143)
..+.
T Consensus 438 A~~~ 441 (501)
T COG3845 438 AIEF 441 (501)
T ss_pred HHHH
Confidence 7763
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.35 E-value=2e-12 Score=116.15 Aligned_cols=53 Identities=4% Similarity=-0.056 Sum_probs=41.9
Q ss_pred HHHHHhhhh----CCCc--CCchhHHHHHHHHHHh---hcCCcccccCCccccchhhhhhhhhcc
Q 032336 81 KLVKLIDKS----NGYI--FAGMDASAVEFSKIAV---RNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 81 ~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~---~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
++++.+++. ++.. +||||+|||+||++|+ .+|+++++| ||++.|+....++++
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD---EPTsGLD~~~~~~Ll 852 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD---EPTTGLHTHDIKALI 852 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 355555552 2233 7999999999999998 699999999 999999988876543
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=2.5e-13 Score=99.41 Aligned_cols=40 Identities=8% Similarity=-0.099 Sum_probs=33.5
Q ss_pred cCCchhHHHHHHHHHH----hhcCCcccccCCccccchhhhhhhhhc
Q 032336 93 IFAGMDASAVEFSKIA----VRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 93 ~lSgGe~qrv~ia~al----~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+|+||||++.+++++ +.+|+++++| ||++.++......+
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllD---EP~~~LD~~~~~~i 169 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVD---EINQGMDPTNERKV 169 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEe---cccccCCHHHHHHH
Confidence 3799999998877655 4799999999 99999998877643
No 402
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.34 E-value=2.8e-12 Score=110.39 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+||+.||++|+.+| +++++| ||++.|+...++++
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILD---EPtsGLD~~~~~~L 872 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILD---EPTTGLHFEDIRKL 872 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEE---CCCCCCCHHHHHHH
Confidence 7999999999999999999 999999 99999999887754
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.33 E-value=1.3e-12 Score=102.74 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=80.2
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCc--------ccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-------c
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFL--------SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-------L 65 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-------l 65 (143)
++.-++|+|+|||||||+|++|+|.. +|++|.|.+--.. + -+.+|-+.. +
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----~-----------~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----V-----------SALIPGEYEPEFGEVTI 472 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----h-----------hhccCcccccccCchhH
Confidence 35678999999999999999999974 6888888653210 1 112222111 0
Q ss_pred cccccCChhhHHHHHHHHHHhhhhCCCc-------CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 66 VNFSTLDIQDKESVAKLVKLIDKSNGYI-------FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
..+.....-|...+.++|.++++.+... +|-||+-|+.||.+++..|.+++-| |-.+-||..+..+
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD---EF~AhLD~~TA~r 545 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID---EFAAHLDELTAVR 545 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh---hhhhhcCHHHHHH
Confidence 0111111234456778888888754322 6999999999999999999999999 8888888776653
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.8e-12 Score=98.23 Aligned_cols=39 Identities=15% Similarity=-0.029 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+||+++|++++. +|+++++| ||++.++...+..+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllD---Ep~~~Ld~~~~~~l 213 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFD---EIDTGISGEVAQAV 213 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEE---CCccCCCHHHHHHH
Confidence 69999999999987654 99999999 99999999887754
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=1.6e-12 Score=113.07 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=90.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..+-++||.||||||||+.++|-.+- ..|+|.++|. +...... ++.++|.+|+...++.++
T Consensus 141 g~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~----~~~e~~~---~~~~aY~~e~DvH~p~lTVreTldFa 213 (1391)
T KOG0065|consen 141 GEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGH----DLKEFVP---KKTVAYNSEQDVHFPELTVRETLDFA 213 (1391)
T ss_pred CceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCC----ccccccc---CceEEeccccccccceeEEeehhhHH
Confidence 356779999999999999999998743 3569999996 3332222 567999999866553221
Q ss_pred ---------CC-hhhHH----HHHHHHHHhhhh---CCC-------cCCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336 71 ---------LD-IQDKE----SVAKLVKLIDKS---NGY-------IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 71 ---------~~-~~~~~----~~~~~l~~l~~~---~~~-------~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
+. .+..+ ..+.+++.+|+. +.. -.|||||+||.+|.+++..+.++++| |++..
T Consensus 214 ~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D---e~t~G 290 (1391)
T KOG0065|consen 214 ARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD---EITRG 290 (1391)
T ss_pred HhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee---ccccc
Confidence 11 11112 456778888763 211 15999999999999999999999999 99999
Q ss_pred hhhhhhhhc
Q 032336 127 SLAEVQEKY 135 (143)
Q Consensus 127 ~~~~~~~~~ 135 (143)
||-.+.-.+
T Consensus 291 LDSsTal~i 299 (1391)
T KOG0065|consen 291 LDSSTAFQI 299 (1391)
T ss_pred ccHHHHHHH
Confidence 998776543
No 406
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.26 E-value=3.6e-12 Score=83.48 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=40.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED 62 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~ 62 (143)
+..++|+||||||||||++++. +|++.++|. ++...+....++.+++++|+
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~----di~~~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI------KRKHRLVGD----DNVEIREDSKDELIGRNPEL 65 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeE----eHHHhhhhhcCCEEEEechh
Confidence 3678999999999999999986 789999986 44444555566667888887
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.25 E-value=3.6e-12 Score=92.36 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+||||||||||+|+|++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 467899999999999999998754
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=7.5e-12 Score=92.11 Aligned_cols=93 Identities=15% Similarity=0.003 Sum_probs=62.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccCChhhHHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
..++|.||||+|||||+++++-. ..-.++| +||.+...++ .+++
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~-------------------------~~la~~g~~vpa~~~~~~----------~~~~ 75 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVI-------------------------VLMAQIGCFVPCDSADIP----------IVDC 75 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHH-------------------------HHHHHhCCCcCcccEEEe----------ccce
Confidence 35789999999999999999821 0112233 6665533211 1122
Q ss_pred HHHHhhhhC--CCcCCchhHHHHHHHHHH--hhcCCcccccCCccc---cchhhhhhhh
Q 032336 82 LVKLIDKSN--GYIFAGMDASAVEFSKIA--VRNVDWDYYRYPSFH---LFQSLAEVQE 133 (143)
Q Consensus 82 ~l~~l~~~~--~~~lSgGe~qrv~ia~al--~~~p~~llld~~~~~---~~~~~~~~~~ 133 (143)
++..++..+ ...+|.++++++.+++++ +.+|+++|+| || |+.+|+....
T Consensus 76 il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLD---Ep~~gT~~lD~~~~~ 131 (222)
T cd03285 76 ILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIID---ELGRGTSTYDGFGLA 131 (222)
T ss_pred eEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEe---cCcCCCChHHHHHHH
Confidence 233333321 123588999999999999 8999999999 99 8888876544
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.1e-11 Score=92.09 Aligned_cols=39 Identities=5% Similarity=-0.233 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHh---------hcCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAV---------RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~---------~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||+|++.+|++++ .+|+++++| ||++.+|...++..
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlD---Ep~a~LD~~~~~~l 231 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLD---DVLAELDLGRQAAL 231 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEc---CcchhcCHHHHHHH
Confidence 5999999999999986 699999999 99999999887743
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.22 E-value=1.7e-12 Score=94.01 Aligned_cols=97 Identities=9% Similarity=-0.080 Sum_probs=57.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc-ccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL-SLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
..++|.|||||||||||++|++.. .+..|.... ..+..+++..|....+. ... .+.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~---------------~~~~~i~~~dqi~~~~~---~~d----~i~~ 87 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP---------------AESASIPLVDRIFTRIG---AED----SISD 87 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc---------------ccccccCCcCEEEEEec---Ccc----cccC
Confidence 358999999999999999999543 233333210 01123555444332211 110 0000
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
.+.. + .++.+++..+.+++.+|+++++| ||++.++.....
T Consensus 88 ~~s~--------~-~~e~~~l~~i~~~~~~~~llllD---Ep~~gld~~~~~ 127 (202)
T cd03243 88 GRST--------F-MAELLELKEILSLATPRSLVLID---ELGRGTSTAEGL 127 (202)
T ss_pred Ccee--------H-HHHHHHHHHHHHhccCCeEEEEe---cCCCCCCHHHHH
Confidence 0111 1 34556677777888999999999 998888876544
No 411
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.21 E-value=3.4e-11 Score=95.01 Aligned_cols=108 Identities=17% Similarity=0.083 Sum_probs=67.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhccccc---------ccccccC-
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYS---------LVNFSTL- 71 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~---------l~~~~~~- 71 (143)
+.+..+|.||.||||++++++|.++|+.| +|..-. ++|=||... ++.....
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln------------------VSykpqkispK~~~tvR~ll~~kIr~ 429 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN------------------VSYKPQKISPKREGTVRQLLHTKIRD 429 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc------------------eeccccccCccccchHHHHHHHHhHh
Confidence 35678999999999999999999999876 332211 222222211 0000000
Q ss_pred ChhhHHHHHHHHHHhhh---hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 72 DIQDKESVAKLVKLIDK---SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~---~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
.-.+..-+.++++-+.+ .++.+ +||||+|||++|.+|-..+++.+-| ||-+-+|.+-
T Consensus 430 ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD---EpsAylDSeQ 491 (592)
T KOG0063|consen 430 AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID---EPSAYLDSEQ 491 (592)
T ss_pred hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec---CchhhcChHH
Confidence 00112233444444332 23444 6999999999999999999999999 7777666543
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=6.3e-11 Score=102.00 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHhh---cCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVR---NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~---~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+||+.||++|+. +|++++|| ||++.++....+.+
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILD---EPtsgLD~~~~~~L 870 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILD---EPTTGLHFDDIKKL 870 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence 79999999999999997 59999999 99999999887754
No 413
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.13 E-value=6.3e-11 Score=95.00 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=40.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYS 64 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~ 64 (143)
++.++|+|||||||||||+ +++..|++| +|.++|..+.. ........+| +|||++.
T Consensus 32 GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~-~~~~ai~~LR----~VFQ~fn 88 (504)
T TIGR03238 32 SSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS-PNKNAMETLD----EIFDGFN 88 (504)
T ss_pred CCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC-CCHHHHHHHH----HHHHhhh
Confidence 4679999999999999999 777788888 79999974321 1222223333 8999864
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.10 E-value=5.3e-11 Score=87.08 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=58.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhC--CcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
..++|.||||+|||||||.+.. ++ +..|.+..... -.++|..|...-+ ... +.+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~---------------~~~~~~d~i~~~l-----~~~--~si~ 86 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS---------------ATIGLVDKIFTRM-----SSR--ESVS 86 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC---------------cEEeeeeeeeeee-----CCc--cChh
Confidence 3578999999999999999983 33 45565543210 1245555543211 111 1111
Q ss_pred HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhh
Q 032336 81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~ 129 (143)
+.+..+ .-|-||+.++++++.+|.++++| ||+..++.
T Consensus 87 ~~~S~f---------~~el~~l~~~l~~~~~~slvllD---E~~~gtd~ 123 (213)
T cd03281 87 SGQSAF---------MIDLYQVSKALRLATRRSLVLID---EFGKGTDT 123 (213)
T ss_pred hccchH---------HHHHHHHHHHHHhCCCCcEEEec---cccCCCCH
Confidence 111111 24789999999999999999999 99888764
No 415
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.03 E-value=2.6e-10 Score=81.60 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=39.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY 63 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~ 63 (143)
|+..++|+||||||||||+++|++...+ .+.+.+..+ ...........+++++|++
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYI----TRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEEC----CCccchhHHhheeEcHHHH
Confidence 6788999999999999999999998765 466665422 2222223445567777764
No 416
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.99 E-value=3.2e-10 Score=82.81 Aligned_cols=40 Identities=8% Similarity=-0.024 Sum_probs=30.7
Q ss_pred cCCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336 93 IFAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 93 ~lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+||||+.++++|..+|. ..+++++| |+++.+|...+.++
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilD---Evd~~LD~~~~~~l 179 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILD---EVDAALDEQNRKRL 179 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEE---STTTTS-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccc---cccccccccccccc
Confidence 689999999999877764 56899999 89999999887754
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.8e-10 Score=89.76 Aligned_cols=53 Identities=6% Similarity=-0.095 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 77 ESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 77 ~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.+++.+|.-++. .++.. +|||=|-||.+||||-.+|-+|+|| ||+--|+...+
T Consensus 390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLD---EPTNHLDLNAV 448 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLD---EPTNHLDLNAV 448 (807)
T ss_pred hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeec---CCcccccccee
Confidence 455666665553 24444 7999999999999999999999999 99988876543
No 418
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.93 E-value=1.1e-09 Score=78.45 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+||||||||||+++|+++++|+.|.|.+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 4568999999999999999999999999999998764
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.83 E-value=2.6e-09 Score=90.93 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC-cccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF-LSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~-~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
..++|.||||+|||||||++++. +.+..| .|.... ...++|+.|.... .. +.+.+.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~---------------~~~~~~~d~i~~~-----i~--~~~si~ 380 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE---------------HSEIPYFEEIFAD-----IG--DEQSIE 380 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc---------------cccccchhheeee-----cC--hHhHHh
Confidence 46889999999999999999987 455555 222110 0113333332211 11 112222
Q ss_pred HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+-+.. +|+++++++.+++++ .+|.++|+| ||.+..+....
T Consensus 381 ~~LSt--------fS~~m~~~~~il~~~-~~~sLvLlD---E~g~GtD~~eg 420 (771)
T TIGR01069 381 QNLST--------FSGHMKNISAILSKT-TENSLVLFD---ELGAGTDPDEG 420 (771)
T ss_pred hhhhH--------HHHHHHHHHHHHHhc-CCCcEEEec---CCCCCCCHHHH
Confidence 22222 468888988887776 689999999 88888775443
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.83 E-value=2.7e-09 Score=76.36 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHh-CCcccCCce
Q 032336 5 QVVIGPPGSGKTTYCNGMS-QFLSLIGSN 32 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~-g~~~~~~G~ 32 (143)
+.|.||||+||||++|.++ ..+-+..|.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~ 30 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGS 30 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999999997 333334443
No 421
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.81 E-value=1e-08 Score=76.67 Aligned_cols=112 Identities=9% Similarity=0.106 Sum_probs=61.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE--EcceeehhhhccccHHHHHhhc--chhcccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC--CSNVFYLQAVHNSACRKLTKEL--CDVIEDYSLVNFS-------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~--~~g~~~~~~~~~~~~~~~~~~i--g~V~Q~~~l~~~~-------- 69 (143)
+..++|+||+|+|||||++.+.+......+++. +... .-...+..++.+.+ .+|......-+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI----~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLI----DERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEc----cCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 356899999999999999999998876543332 2110 00112333443333 1111111100000
Q ss_pred ----------c----CChhhHHHHHHHHHHhhhhCCCcCCchh--------HHHHHHHHHHhhcCCcccc
Q 032336 70 ----------T----LDIQDKESVAKLVKLIDKSNGYIFAGMD--------ASAVEFSKIAVRNVDWDYY 117 (143)
Q Consensus 70 ----------~----~~~~~~~~~~~~l~~l~~~~~~~lSgGe--------~qrv~ia~al~~~p~~lll 117 (143)
. .-.++..+..++.+.+....+...|||+ +||+++||++..++.+.++
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 0 0001122233333333334445569999 9999999998788998888
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.78 E-value=5.3e-09 Score=76.71 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|+|||||||||+||++++..
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999998643
No 423
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.78 E-value=4.6e-09 Score=77.50 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=29.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI 33 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i 33 (143)
.+.++|.||||||||||++.|++++++.+|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 46799999999999999999999999999983
No 424
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.76 E-value=5.7e-09 Score=75.81 Aligned_cols=27 Identities=30% Similarity=0.202 Sum_probs=24.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
++.++|+||||||||||++.|++++++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467999999999999999999999876
No 425
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=1.5e-08 Score=73.40 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=39.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS 64 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~ 64 (143)
+.++|+||+|||||||++.+.+.+++..+-..+.+ +........+....++++|+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~~ 58 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITN-----DIYTQEDAEFLVKNSALPPERI 58 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeC-----CcCChhHHHHHHHcCCCCcCce
Confidence 57899999999999999999998877655333332 2222233445566788888654
No 426
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.76 E-value=1.2e-08 Score=72.51 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
++.++|+|||||||||++++|++++.+ +.++|.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd 35 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA----KFIDGD 35 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCc
Confidence 457899999999999999999999876 477774
No 427
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.75 E-value=9.1e-09 Score=78.52 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=31.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~~g~ 38 (143)
.+.+||.|||||||||++++|.+++. |++|+|.+.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~ 100 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITT 100 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEec
Confidence 47899999999999999999999987 77888776443
No 428
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=7.2e-09 Score=83.02 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=44.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc---H-HHHHhhcchhccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA---C-RKLTKELCDVIEDYS 64 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---~-~~~~~~ig~V~Q~~~ 64 (143)
+..++|+||||||||||+++|+++.+|+.|.|.+.|.. +.++.... . ..+++.+++|+|...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGer-grev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGER-GREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccC-CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 35789999999999999999999999999988876420 01222111 1 123457999999755
No 429
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.73 E-value=1.7e-08 Score=76.50 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
++|.|+||||||||++.|++++++..+.+...+
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D 34 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD 34 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECc
Confidence 799999999999999999999988877665433
No 430
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=1.4e-08 Score=73.86 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.||||+||||++++++++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998763
No 431
>PLN02796 D-glycerate 3-kinase
Probab=98.70 E-value=4.9e-08 Score=75.94 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~ 38 (143)
+.++|+|+||||||||++.|.+++++. .|.|.++|.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 459999999999999999999999874 578888885
No 432
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.69 E-value=2.6e-08 Score=71.74 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
.++|.||||||||||.++|.+++ ..+.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 37999999999999999999988 345554444
No 433
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.66 E-value=2.7e-08 Score=71.88 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
+..++|+||||||||||+++|++.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999999875
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.65 E-value=4.6e-08 Score=77.64 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=69.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHH-hhcchhcccc--------------cccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLT-KELCDVIEDY--------------SLVN 67 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~--------------~l~~ 67 (143)
.-.+++|-||-||||-+++++|-++|.-|.-- ++ +.+..-....| ..+---|+.. ...+
T Consensus 101 ~vlglvgtngigkstAlkilagk~kpnlg~~~-~p-----p~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 101 QVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred hhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 34689999999999999999999999877542 11 00000000000 0000001111 0000
Q ss_pred c---cc----C-ChhhHHHHHHHHHHhhh---h--CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 68 F---ST----L-DIQDKESVAKLVKLIDK---S--NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 68 ~---~~----~-~~~~~~~~~~~l~~l~~---~--~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
. .. . ...+.....++++.+++ . +...+||||-||.+||++.++..++.++| ||-+-||....
T Consensus 175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFD---EpSsYLDVKQR 249 (592)
T KOG0063|consen 175 RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFD---EPSSYLDVKQR 249 (592)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEec---CCcccchHHHh
Confidence 0 00 0 11122233344444433 2 33447999999999999999999999999 77677766443
No 435
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=3.1e-07 Score=60.74 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=28.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g 37 (143)
...+.|+||+|+||||+++.++..+.... +-++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence 35688999999999999999999887654 4555544
No 436
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.58 E-value=1.5e-07 Score=74.89 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=32.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~ 38 (143)
+.+||.|++|||||||++.|.+++++. .|.|.+++.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 678999999999999999999998776 678888885
No 437
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.57 E-value=8.6e-08 Score=66.93 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=30.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC----cccCCc----eEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF----LSLIGS----NICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~----~~~~~G----~i~~~g~ 38 (143)
+.++|+||||||||||++.+.+. ..|+.| .+.++|.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF 58 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence 57999999999999999999997 567888 7777664
No 438
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.56 E-value=4.2e-08 Score=72.13 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCccc--CCceEEE
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICC 35 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~ 35 (143)
.+||.||||||||||++.|.+.+.+ .++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 3799999999999999999999875 4566654
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.54 E-value=5.8e-08 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIG 30 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~ 30 (143)
.+.|.||||||||||+..|.-++-+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 588999999999999999887766554
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=98.54 E-value=8.1e-08 Score=75.38 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=43.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
..++|+|+||+|||||++.|+|...+..|+|.+++. ... . ....+.+.+++|...++
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~----~g~--~-tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS----KGR--H-TTTHRELHPLPSGGLLI 252 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC----CCc--c-hhhhccEEEecCCCeec
Confidence 468999999999999999999999999999998763 111 1 12345577777765443
No 441
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.53 E-value=6.6e-08 Score=74.79 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+.++|+||||+||||++..|++.+.+..++|.+.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 578999999999999999999999988889987664
No 442
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.53 E-value=8.6e-08 Score=79.07 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=32.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|.||||||||||++.|++++ |..|.|.++|.
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy 100 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNY 100 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcce
Confidence 4689999999999999999999997 57889998884
No 443
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.51 E-value=1.1e-07 Score=68.58 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=28.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
+..++|+|+||+|||||++.|.|...++.|.+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~ 34 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT 34 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence 4679999999999999999999987777665543
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.50 E-value=1.4e-07 Score=72.67 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=32.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+..++|.||+|||||||+++|++++++..+.+.+++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 357899999999999999999999999999888764
No 445
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=5.7e-07 Score=72.06 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=32.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++|+|+||+|||||+++|++..+++.|.|.+.|+
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe 192 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE 192 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC
Confidence 468999999999999999999999999998877664
No 446
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.44 E-value=2e-07 Score=65.96 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=25.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..++|+||||||||||++.|+..+.+. |.+.+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 457899999999999999999987554 54443
No 447
>PRK07429 phosphoribulokinase; Provisional
Probab=98.44 E-value=3.1e-07 Score=71.34 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=28.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
++.++|.|+|||||||+++.|++++.+..+.+.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi 40 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVI 40 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence 468999999999999999999999988766554
No 448
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.43 E-value=2.6e-07 Score=66.70 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=30.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~ 38 (143)
..++|+|+||||||||.+.|.+.+.+. .|.+.++|.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 578999999999999999999977554 467888874
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.43 E-value=1.1e-07 Score=67.52 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=28.0
Q ss_pred eeEEEECCCCCcHHHHHHHHh---CCcccCCceEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC 34 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~ 34 (143)
..++|+||+||||||+++.|+ |+..++.|++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 468999999999999999999 88778887764
No 450
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=2.2e-07 Score=74.69 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=43.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc-----cccHHHHHhhcchhccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH-----NSACRKLTKELCDVIED 62 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~~~~~~~~~~ig~V~Q~ 62 (143)
+..++|+|+||+|||||+++|+++.+|+.|.|.+.|+.- .++. ......+++.+.++.+.
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg-~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG-REVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC-ccHHHHHHhhcChhhhcCeEEEEECC
Confidence 357899999999999999999999999999998865311 1111 12233466778888654
No 451
>PRK13695 putative NTPase; Provisional
Probab=98.41 E-value=6e-08 Score=68.56 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=52.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKLV 83 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~l 83 (143)
.++|.|+||||||||++.+.+.+.+ .| +.+.|. ..++. ....+..++...+ +. . .. ...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~-~~~~~-----~~~~~~~~~~~~~--~~-----~-~~----~~~l 61 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGF-YTEEV-----REGGKRIGFKIID--LD-----T-GE----EGIL 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEE-EcHHH-----HhcCCccceEEEE--cC-----C-CC----eEEc
Confidence 5789999999999999998887655 45 333332 11111 0011112221111 00 0 00 0001
Q ss_pred HHhhh-----hCC--CcCCchhHHHHHHHHHHhhcCCccccc
Q 032336 84 KLIDK-----SNG--YIFAGMDASAVEFSKIAVRNVDWDYYR 118 (143)
Q Consensus 84 ~~l~~-----~~~--~~lSgGe~qrv~ia~al~~~p~~llld 118 (143)
...+. ... ..+|++++-++.+++....+|+++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllD 103 (174)
T PRK13695 62 ARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIID 103 (174)
T ss_pred cccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEE
Confidence 11111 011 125789999999888888899999999
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.41 E-value=7.2e-07 Score=61.12 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=28.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+.|.||||+||||+++.+++...+..+.+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999998877777776544
No 453
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.40 E-value=1.8e-07 Score=73.44 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
-.+.|.||+||||||++++|++.+.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999884
No 454
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.40 E-value=2e-07 Score=68.48 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=29.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHh---CCcccCCceEE
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC 34 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~ 34 (143)
|...++|.||+||||||+++.|+ |+..+++|.++
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~ 37 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence 66789999999999999999999 55557888774
No 455
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.39 E-value=4.4e-07 Score=64.38 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=29.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g 37 (143)
...++|+|++|||||||++.|.+.+.+.. |.|...+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 34789999999999999999999887643 7887755
No 456
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=3.1e-07 Score=82.47 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=29.5
Q ss_pred eEEEECCCCCcHHHHHHHH----hCCcccC-CceEEEcc
Q 032336 4 GQVVIGPPGSGKTTYCNGM----SQFLSLI-GSNICCSN 37 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l----~g~~~~~-~G~i~~~g 37 (143)
.++|+|||||||||++.+| .|..+|. .|.+++.+
T Consensus 30 ~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~ 68 (1311)
T TIGR00606 30 LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHD 68 (1311)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecC
Confidence 5789999999999999999 5998885 78877765
No 457
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.39 E-value=1.5e-07 Score=66.04 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.8
Q ss_pred ECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 8 IGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 8 iGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+|+|||||||+++.|++.+ |.+.+++
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeC
Confidence 5999999999999999887 5677777
No 458
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.39 E-value=7.8e-07 Score=65.84 Aligned_cols=35 Identities=20% Similarity=0.013 Sum_probs=27.9
Q ss_pred eeEEEECCCCCcHHHH-HHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTY-CNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTL-l~~l~g~~~~~~G~i~~~g 37 (143)
..+.|.|||||||||| ++.+.+..++....+++..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4688999999999999 6899988766655566543
No 459
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.38 E-value=5.1e-07 Score=76.33 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||.|||-+|.-|.... -+++|| ||++.|--...++.
T Consensus 823 LSGGEaQRvKLA~EL~k~~tg~TlYiLD---EPTTGLH~~Di~kL 864 (935)
T COG0178 823 LSGGEAQRVKLAKELSKRSTGKTLYILD---EPTTGLHFDDIKKL 864 (935)
T ss_pred ccchHHHHHHHHHHHhhccCCCeEEEeC---CCCCCCCHHHHHHH
Confidence 7999999999999999877 799999 99999876665543
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.37 E-value=2.7e-07 Score=73.93 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=26.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS 31 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G 31 (143)
+..++|+||||||||||+++|+|+.+++.+
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 357899999999999999999999988754
No 461
>PRK08149 ATP synthase SpaL; Validated
Probab=98.36 E-value=2.5e-07 Score=73.95 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=31.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~ 38 (143)
+..++|+|+||+|||||+++|+++..++. |.|...|.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ 190 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGR 190 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCc
Confidence 35789999999999999999999988876 77777775
No 462
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=3.6e-07 Score=79.22 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=35.8
Q ss_pred CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+|||.||++|+.+| ++++|| ||++.|+....++.
T Consensus 488 LSGGE~QRv~LA~aL~~~~~~~llILD---EPtagLD~~~~~~L 528 (924)
T TIGR00630 488 LSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHQRDNERL 528 (924)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEc---CCccCCCHHHHHHH
Confidence 7999999999999999986 899999 99999999887654
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.34 E-value=4.2e-07 Score=64.25 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..++|+||||||||||++.|++..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4689999999999999999999763
No 464
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.33 E-value=4.2e-07 Score=61.76 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 032336 5 QVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~ 25 (143)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999997
No 465
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.33 E-value=5.1e-07 Score=65.52 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|.|+||||||||.+.|.+.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999999987
No 466
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.29 E-value=9.6e-07 Score=62.70 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC--------CcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ--------FLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g--------~~~~~~G~i~~~g~ 38 (143)
.+.++|+|++|||||||++.+.+ ...|..+++.+++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNI 63 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCE
Confidence 35789999999999999999987 34456677777664
No 467
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=3.3e-07 Score=73.61 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=33.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC---ceEEEcceee
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG---SNICCSNVFY 40 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~---G~i~~~g~~~ 40 (143)
+..++|+|+||+|||||+++|+++.+|+. |.|.+.|..+
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV 216 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence 35689999999999999999999999885 7787777643
No 468
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=6.1e-07 Score=68.48 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..++++|+||+|||||++.|.|...+..|+|..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 357899999999999999999999999999875
No 469
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=7.7e-07 Score=68.27 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=30.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..++++|+||+|||||++.|.|...+..|+|..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 468899999999999999999999999999975
No 470
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.29 E-value=5.1e-07 Score=61.90 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHh--CCcccCCce
Q 032336 5 QVVIGPPGSGKTTYCNGMS--QFLSLIGSN 32 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~--g~~~~~~G~ 32 (143)
++|+|++|||||||++.|. +..++.+++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence 6899999999999999999 676666665
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.29 E-value=8.4e-07 Score=67.66 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=31.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
.+.+.|+|+||||||||++.+.+.++...+.+.+.|
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~g 139 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEG 139 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECC
Confidence 367899999999999999999998877777777777
No 472
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.25 E-value=9.3e-07 Score=60.38 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCccc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
++|+||+|||||||++.|+..+++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 689999999999999999998654
No 473
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.25 E-value=1.1e-06 Score=79.40 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=32.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
.++|+|+|||||||+|++|++++.|..|.+.|++.
T Consensus 29 ~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~ 63 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (1486)
T ss_pred eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCc
Confidence 57899999999999999999999999999988864
No 474
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.25 E-value=1.1e-06 Score=71.73 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=33.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
++.+.|+||||||||||++.|.|+++|.+|++.++..
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~ 246 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESA 246 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecc
Confidence 4678999999999999999999999999999887764
No 475
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.24 E-value=4.4e-06 Score=57.49 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.||||.|||||||++.|.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 57799999999999999999976
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.24 E-value=1.1e-06 Score=63.52 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSN 37 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g 37 (143)
.+.|.||+||||||+++.+.+.+.+ ..|.|....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 4789999999999999998888764 356665433
No 477
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.24 E-value=7.9e-07 Score=77.27 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhcc
Q 032336 94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+||||+|||+||++|+.+| ++++|| ||++.|+....++++
T Consensus 490 LSgGE~QRv~LA~aL~~~~~~~llILD---EPtagLd~~~~~~L~ 531 (943)
T PRK00349 490 LSGGEAQRIRLATQIGSGLTGVLYVLD---EPSIGLHQRDNDRLI 531 (943)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEec---CCccCCCHHHHHHHH
Confidence 6999999999999999997 999999 999999998877543
No 478
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.20 E-value=1.1e-06 Score=75.16 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=28.4
Q ss_pred CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
+|+++++++.|++++ .+|.++|+| ||++..+..
T Consensus 391 fS~~m~~~~~Il~~~-~~~sLvLlD---E~~~GtDp~ 423 (782)
T PRK00409 391 FSGHMTNIVRILEKA-DKNSLVLFD---ELGAGTDPD 423 (782)
T ss_pred HHHHHHHHHHHHHhC-CcCcEEEec---CCCCCCCHH
Confidence 468999999999988 789999999 888887754
No 479
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.20 E-value=1.3e-06 Score=65.12 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC--cccCCceEEE
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICC 35 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~ 35 (143)
.++|+|++||||||+++.|+|+ .+...|.+..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~ 61 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 61 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc
Confidence 5899999999999999999998 5556777653
No 480
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.20 E-value=1.7e-06 Score=67.09 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=31.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+..++|+|+||+|||||+++|++...|+.|.+..-|
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iG 104 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIG 104 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEe
Confidence 357899999999999999999999999988776655
No 481
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=2e-06 Score=68.79 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=32.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++|+|+||+|||||+++|++..+|+.|.|.+.|.
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGe 176 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGE 176 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEee
Confidence 468999999999999999999999999998887774
No 482
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.17 E-value=2.3e-06 Score=66.89 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|.||+||||||+++.|++.+++..+.+.+.+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 45789999999999999999999999888888765
No 483
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.17 E-value=1.9e-06 Score=60.50 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=22.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
..++++|+||+|||||++.|.+-..-..|+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 35789999999999999999998766667664
No 484
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.16 E-value=2e-06 Score=61.19 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHh-CCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMS-QFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~-g~~ 26 (143)
|+.++|+|+||+|||||++.+. |..
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC
Confidence 6789999999999999999997 443
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.14 E-value=1.1e-06 Score=71.45 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=26.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~ 32 (143)
..++++||||+||||++..|++.+....|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999988777664
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.14 E-value=1.8e-06 Score=60.16 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+.|+||+||||||+.+.|.+.+ |.+.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l----~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL----GAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc----CCeEEeC
Confidence 4689999999999999999876 3555655
No 487
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.14 E-value=2.4e-06 Score=69.85 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
++.+.|+||||+|||||++.|.++++|.+|++.++..
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~ 247 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETA 247 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecc
Confidence 3578999999999999999999999999998887764
No 488
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.13 E-value=1.8e-06 Score=57.04 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.||+||||||+.+.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998754
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.11 E-value=2.6e-06 Score=68.31 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=32.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+|+||+|||||+++|+++.+++.|.+.+.|.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 3578999999999999999999999999987776663
No 490
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.09 E-value=3.6e-06 Score=67.51 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=31.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..++|+|+||+|||||+++|++..+|+.|.+...|
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG 180 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARGASADVNVIALIG 180 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEc
Confidence 56899999999999999999999999998887755
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=98.08 E-value=4.5e-06 Score=65.20 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=32.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..+.|.|++||||||+++.++++++|..+.+.+++.
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~ 214 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDA 214 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCc
Confidence 467899999999999999999999999999988764
No 492
>PRK05922 type III secretion system ATPase; Validated
Probab=98.08 E-value=4.3e-06 Score=67.09 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=31.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+..++|+||||+|||||+++|++..+++.|.+..-|
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liG 192 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIG 192 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeC
Confidence 356899999999999999999999999988886655
No 493
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.08 E-value=4.1e-06 Score=67.39 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=33.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+|+||+|||||++++++...++.|.+.+.|+
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 3568999999999999999999999999998887774
No 494
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.08 E-value=4.2e-06 Score=67.40 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=31.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+..++|+|+||+|||||+++|++..+++.|.+...|
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG 198 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIG 198 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEe
Confidence 357899999999999999999999999888776655
No 495
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.07 E-value=4.6e-06 Score=60.36 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc-ccCCceEE
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL-SLIGSNIC 34 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~-~~~~G~i~ 34 (143)
-+||+|++|+|||||++.|++.. ....+++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~ 33 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELE 33 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEE
Confidence 37899999999999999999984 44566664
No 496
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.07 E-value=3.2e-06 Score=59.71 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=29.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g 37 (143)
.+.+.+.|++||||||+.+.|...+. +..|.+.+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 35789999999999999999988764 4566777765
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.07 E-value=3e-06 Score=55.73 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 032336 5 QVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~ 25 (143)
++|+|+.|+|||||++.|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 498
>PRK07261 topology modulation protein; Provisional
Probab=98.06 E-value=2.8e-06 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|+|++|||||||.+.|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998664
No 499
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.05 E-value=2.7e-06 Score=62.72 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=27.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhC-CcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ-FLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g-~~~~~~G~i~~ 35 (143)
..++|.||||+||||+++++++ .+.+..|....
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4678999999999999999999 56677776543
No 500
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.05 E-value=3.1e-06 Score=66.00 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
-++.|.|+||+|||||+|++++++++..|.+.
T Consensus 26 g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~ 57 (337)
T TIGR02030 26 GGVMVMGDRGTGKSTAVRALAALLPEIKAVAG 57 (337)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHhhcccccccC
Confidence 35789999999999999999999988777663
Done!