Query 032336
Match_columns 143
No_of_seqs 230 out of 2081
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-36 1.4E-40 233.2 9.3 131 2-136 54-203 (366)
2 3tif_A Uncharacterized ABC tra 100.0 2.1E-35 7.3E-40 217.6 9.8 128 2-136 31-185 (235)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-35 5.8E-40 229.4 7.7 130 2-136 30-178 (359)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.3E-35 1.1E-39 221.0 8.8 130 2-136 34-183 (275)
5 4g1u_C Hemin import ATP-bindin 100.0 1.5E-34 5E-39 216.6 10.7 128 2-136 37-187 (266)
6 3rlf_A Maltose/maltodextrin im 100.0 5.6E-35 1.9E-39 227.9 8.2 125 2-135 29-172 (381)
7 2pcj_A ABC transporter, lipopr 100.0 1.8E-34 6.3E-39 211.2 9.2 128 2-136 30-180 (224)
8 2olj_A Amino acid ABC transpor 100.0 2.6E-34 8.9E-39 214.9 10.2 130 2-136 50-199 (263)
9 1b0u_A Histidine permease; ABC 100.0 3.6E-34 1.2E-38 214.0 9.4 131 2-135 32-192 (262)
10 1ji0_A ABC transporter; ATP bi 100.0 7.9E-34 2.7E-38 209.7 10.5 128 2-136 32-179 (240)
11 2it1_A 362AA long hypothetical 100.0 3.4E-34 1.2E-38 222.5 8.7 125 2-135 29-172 (362)
12 1z47_A CYSA, putative ABC-tran 100.0 2.7E-34 9.2E-39 222.5 8.0 125 2-135 41-184 (355)
13 1vpl_A ABC transporter, ATP-bi 100.0 6E-34 2.1E-38 212.2 9.4 127 2-136 41-186 (256)
14 1g6h_A High-affinity branched- 100.0 1.3E-33 4.4E-38 210.5 10.7 127 2-135 33-192 (257)
15 2yyz_A Sugar ABC transporter, 100.0 2.7E-34 9.4E-39 222.9 7.0 125 2-135 29-172 (359)
16 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-34 2.7E-38 213.9 9.2 128 2-136 47-201 (279)
17 1v43_A Sugar-binding transport 100.0 4.5E-34 1.5E-38 222.6 8.1 125 2-135 37-180 (372)
18 1g29_1 MALK, maltose transport 100.0 5.4E-34 1.8E-38 222.2 8.3 129 2-135 29-178 (372)
19 2ff7_A Alpha-hemolysin translo 100.0 9E-34 3.1E-38 210.3 8.6 128 2-136 35-185 (247)
20 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-34 6.6E-39 223.4 5.0 130 2-135 31-179 (353)
21 3d31_A Sulfate/molybdate ABC t 100.0 8E-34 2.7E-38 219.5 8.3 124 2-135 26-166 (348)
22 2onk_A Molybdate/tungstate ABC 100.0 4.9E-34 1.7E-38 210.9 6.4 125 3-136 25-166 (240)
23 3nh6_A ATP-binding cassette SU 100.0 1.2E-33 4E-38 215.3 7.5 128 2-136 80-230 (306)
24 2qi9_C Vitamin B12 import ATP- 100.0 2.9E-33 9.9E-38 207.8 9.1 126 2-135 26-172 (249)
25 1mv5_A LMRA, multidrug resista 100.0 1.5E-33 5E-38 208.6 6.2 127 2-135 28-178 (243)
26 3gd7_A Fusion complex of cysti 100.0 4.7E-33 1.6E-37 218.0 8.6 126 2-135 47-194 (390)
27 1sgw_A Putative ABC transporte 100.0 4.5E-33 1.5E-37 202.6 7.7 122 2-135 35-172 (214)
28 2ixe_A Antigen peptide transpo 100.0 1E-32 3.4E-37 207.1 9.6 128 2-136 45-196 (271)
29 2yz2_A Putative ABC transporte 100.0 1.1E-32 3.8E-37 206.3 8.8 125 2-136 33-178 (266)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 2.8E-32 9.6E-37 202.5 9.3 127 2-135 29-182 (250)
31 2ghi_A Transport protein; mult 100.0 2.9E-32 9.8E-37 203.5 8.6 126 2-135 46-194 (260)
32 2zu0_C Probable ATP-dependent 100.0 6.6E-32 2.3E-36 202.3 9.6 127 2-135 46-203 (267)
33 2pjz_A Hypothetical protein ST 100.0 1.3E-31 4.4E-36 200.3 6.6 121 3-136 31-168 (263)
34 2nq2_C Hypothetical ABC transp 100.0 1.8E-31 6.1E-36 198.6 7.0 114 2-135 31-167 (253)
35 3b5x_A Lipid A export ATP-bind 100.0 5.7E-31 1.9E-35 215.2 9.7 128 2-136 369-520 (582)
36 3b60_A Lipid A export ATP-bind 100.0 4.8E-31 1.6E-35 215.7 9.2 128 2-136 369-520 (582)
37 2yl4_A ATP-binding cassette SU 100.0 5.9E-31 2E-35 215.6 8.2 128 2-136 370-523 (595)
38 4a82_A Cystic fibrosis transme 100.0 8.8E-31 3E-35 214.0 8.8 127 2-135 367-516 (578)
39 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-30 5.7E-35 212.7 9.2 128 2-136 369-519 (587)
40 2pze_A Cystic fibrosis transme 100.0 1.3E-30 4.4E-35 191.3 7.5 115 2-137 34-171 (229)
41 2cbz_A Multidrug resistance-as 100.0 1.7E-30 5.8E-35 191.6 7.6 114 2-135 31-166 (237)
42 3qf4_B Uncharacterized ABC tra 100.0 1.9E-30 6.4E-35 212.8 6.8 127 2-135 381-530 (598)
43 2bbs_A Cystic fibrosis transme 100.0 6.5E-30 2.2E-34 193.5 5.0 114 2-136 64-199 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.7E-29 9.3E-34 220.2 9.1 127 2-135 1105-1256(1321)
45 4f4c_A Multidrug resistance pr 99.9 3.8E-28 1.3E-32 213.0 9.2 125 2-133 444-591 (1321)
46 3g5u_A MCG1178, multidrug resi 99.9 4.9E-28 1.7E-32 211.8 9.1 126 2-134 416-564 (1284)
47 3g5u_A MCG1178, multidrug resi 99.9 6.6E-28 2.2E-32 211.0 8.9 127 2-135 1059-1210(1284)
48 3ozx_A RNAse L inhibitor; ATP 99.9 2E-27 7E-32 192.7 5.5 115 2-135 294-424 (538)
49 3bk7_A ABC transporter ATP-bin 99.9 5.1E-27 1.7E-31 192.6 6.0 114 2-135 382-510 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.9 3.2E-27 1.1E-31 191.6 4.0 126 2-134 47-196 (538)
51 3bk7_A ABC transporter ATP-bin 99.9 4.4E-27 1.5E-31 193.0 4.1 127 2-135 117-267 (607)
52 1yqt_A RNAse L inhibitor; ATP- 99.9 6.5E-27 2.2E-31 189.8 4.3 115 2-136 312-441 (538)
53 3ozx_A RNAse L inhibitor; ATP 99.9 1.6E-26 5.4E-31 187.5 4.4 126 2-135 25-177 (538)
54 3j16_B RLI1P; ribosome recycli 99.9 5.7E-26 2E-30 186.3 5.1 126 2-134 103-259 (608)
55 3j16_B RLI1P; ribosome recycli 99.9 1.6E-25 5.4E-30 183.7 6.4 113 3-135 379-506 (608)
56 2iw3_A Elongation factor 3A; a 99.9 1.7E-24 5.9E-29 184.3 4.7 56 77-135 878-940 (986)
57 3b85_A Phosphate starvation-in 99.9 6.1E-26 2.1E-30 164.3 -5.6 105 2-126 22-134 (208)
58 3ux8_A Excinuclease ABC, A sub 99.9 2.9E-23 9.9E-28 172.0 6.7 124 2-136 44-244 (670)
59 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-24 4.7E-29 173.2 -4.7 113 2-130 138-276 (460)
60 1ye8_A Protein THEP1, hypothet 99.9 8.2E-23 2.8E-27 144.5 1.3 108 4-133 2-120 (178)
61 2iw3_A Elongation factor 3A; a 99.8 1E-21 3.5E-26 167.4 5.4 112 2-135 461-587 (986)
62 4aby_A DNA repair protein RECN 99.8 1.4E-21 4.9E-26 153.1 4.1 39 94-135 296-336 (415)
63 3sop_A Neuronal-specific septi 99.8 8.1E-23 2.8E-27 153.1 -4.6 124 2-135 2-137 (270)
64 3ux8_A Excinuclease ABC, A sub 99.8 5E-21 1.7E-25 158.6 4.5 56 78-136 522-586 (670)
65 4gp7_A Metallophosphoesterase; 99.8 5.2E-21 1.8E-25 134.0 2.9 104 2-132 9-119 (171)
66 1tq4_A IIGP1, interferon-induc 99.8 3.8E-21 1.3E-25 151.5 1.9 114 4-134 71-204 (413)
67 3aez_A Pantothenate kinase; tr 99.8 3E-21 1E-25 147.2 -2.0 103 2-128 90-208 (312)
68 1e69_A Chromosome segregation 99.8 1.5E-18 5.3E-23 132.5 7.4 39 94-135 220-262 (322)
69 1z6g_A Guanylate kinase; struc 99.7 1.2E-21 4.2E-26 142.3 -9.7 120 2-132 23-163 (218)
70 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.5E-19 8.5E-24 137.6 2.1 81 2-125 171-251 (330)
71 2f1r_A Molybdopterin-guanine d 99.7 1.6E-20 5.3E-25 132.1 -5.5 113 1-115 1-125 (171)
72 3b9q_A Chloroplast SRP recepto 99.7 1.9E-19 6.7E-24 136.7 -0.3 121 2-133 100-239 (302)
73 2vf7_A UVRA2, excinuclease ABC 99.7 2.1E-18 7.3E-23 145.6 3.4 56 77-135 708-772 (842)
74 2r6f_A Excinuclease ABC subuni 99.7 5E-18 1.7E-22 144.3 5.7 55 79-136 825-888 (972)
75 2og2_A Putative signal recogni 99.7 1.2E-18 4.3E-23 135.0 0.8 121 2-133 157-296 (359)
76 3pih_A Uvrabc system protein A 99.7 9E-18 3.1E-22 142.8 5.4 57 77-136 783-848 (916)
77 2v9p_A Replication protein E1; 99.7 2.6E-18 8.9E-23 130.6 1.0 99 2-135 126-232 (305)
78 2ygr_A Uvrabc system protein A 99.7 4E-17 1.4E-21 139.2 6.8 55 79-136 843-906 (993)
79 1rj9_A FTSY, signal recognitio 99.7 4.3E-18 1.5E-22 129.4 0.6 112 3-118 103-229 (304)
80 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 3.7E-16 1.3E-20 121.4 7.4 39 94-135 280-324 (365)
81 2eyu_A Twitching motility prot 99.6 2E-16 6.9E-21 117.8 2.9 83 2-124 25-108 (261)
82 3asz_A Uridine kinase; cytidin 99.6 5.2E-17 1.8E-21 116.4 -2.3 109 2-126 6-123 (211)
83 3szr_A Interferon-induced GTP- 99.6 1.3E-17 4.5E-22 137.0 -7.0 117 4-132 47-170 (608)
84 1znw_A Guanylate kinase, GMP k 99.6 3.9E-17 1.3E-21 117.2 -4.6 57 2-66 20-76 (207)
85 1pui_A ENGB, probable GTP-bind 99.6 5.2E-15 1.8E-19 105.3 6.5 129 2-134 26-188 (210)
86 2i3b_A HCR-ntpase, human cance 99.5 4.4E-17 1.5E-21 116.1 -5.1 109 3-129 2-122 (189)
87 2jeo_A Uridine-cytidine kinase 99.5 3.8E-16 1.3E-20 114.8 -2.7 104 2-128 25-147 (245)
88 1lw7_A Transcriptional regulat 99.5 3.6E-16 1.2E-20 121.1 -3.1 115 2-118 170-326 (365)
89 2ehv_A Hypothetical protein PH 99.5 7.9E-15 2.7E-19 106.9 4.2 118 2-128 30-149 (251)
90 2dpy_A FLII, flagellum-specifi 99.5 9.8E-15 3.3E-19 115.8 4.8 104 2-114 157-275 (438)
91 1p9r_A General secretion pathw 99.5 9.6E-17 3.3E-21 126.7 -6.7 114 3-118 168-316 (418)
92 2rcn_A Probable GTPase ENGC; Y 99.5 2.9E-15 9.9E-20 116.0 1.4 102 3-113 216-333 (358)
93 1cr0_A DNA primase/helicase; R 99.5 1.7E-14 5.8E-19 108.4 3.6 114 2-126 35-159 (296)
94 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.9E-20 115.8 -3.9 113 2-129 18-143 (301)
95 1zp6_A Hypothetical protein AT 99.4 3.4E-14 1.1E-18 100.0 2.5 105 2-116 9-132 (191)
96 2yv5_A YJEQ protein; hydrolase 99.4 7.6E-15 2.6E-19 111.3 -1.9 99 2-106 165-300 (302)
97 4a74_A DNA repair and recombin 99.4 1.2E-13 4.3E-18 99.3 4.0 101 2-129 25-140 (231)
98 3c8u_A Fructokinase; YP_612366 99.4 6.6E-15 2.3E-19 105.6 -2.8 103 2-118 22-137 (208)
99 3e70_C DPA, signal recognition 99.4 6.4E-14 2.2E-18 107.4 2.4 65 2-66 129-195 (328)
100 1tf7_A KAIC; homohexamer, hexa 99.4 2.6E-13 8.9E-18 109.6 5.4 99 2-130 281-386 (525)
101 1ewq_A DNA mismatch repair pro 99.4 1.1E-13 3.8E-18 116.1 3.3 93 3-131 577-675 (765)
102 1tf7_A KAIC; homohexamer, hexa 99.4 2.5E-14 8.4E-19 115.6 -0.9 58 2-64 39-98 (525)
103 2gza_A Type IV secretion syste 99.4 1.4E-13 4.6E-18 106.7 2.7 56 2-63 175-231 (361)
104 1u0l_A Probable GTPase ENGC; p 99.4 6.6E-14 2.2E-18 106.0 0.8 60 2-65 169-231 (301)
105 3qkt_A DNA double-strand break 99.4 3.4E-12 1.2E-16 97.9 9.9 38 94-134 249-292 (339)
106 3jvv_A Twitching mobility prot 99.4 1E-13 3.5E-18 107.4 1.3 82 3-124 124-206 (356)
107 2ewv_A Twitching motility prot 99.4 1.3E-13 4.5E-18 107.2 2.0 83 2-124 136-219 (372)
108 2bbw_A Adenylate kinase 4, AK4 99.4 3.6E-14 1.2E-18 104.1 -1.2 35 3-37 28-65 (246)
109 2obl_A ESCN; ATPase, hydrolase 99.3 6.5E-13 2.2E-17 102.5 4.6 37 2-38 71-107 (347)
110 1pzn_A RAD51, DNA repair and r 99.3 4.3E-13 1.5E-17 103.5 2.6 103 2-130 131-247 (349)
111 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.4E-12 4.6E-17 93.7 5.0 111 3-127 24-136 (235)
112 1htw_A HI0065; nucleotide-bind 99.3 4.5E-13 1.6E-17 92.7 2.3 55 2-66 33-87 (158)
113 1lvg_A Guanylate kinase, GMP k 99.3 3.7E-14 1.3E-18 101.2 -3.7 55 2-65 4-71 (198)
114 2x8a_A Nuclear valosin-contain 99.3 1.2E-13 4.1E-18 103.3 -1.5 99 3-115 45-159 (274)
115 2qm8_A GTPase/ATPase; G protei 99.3 5.4E-13 1.8E-17 102.5 2.0 66 2-67 55-120 (337)
116 1nij_A Hypothetical protein YJ 99.3 9.7E-14 3.3E-18 105.8 -2.7 112 3-115 5-163 (318)
117 1vma_A Cell division protein F 99.3 5.2E-12 1.8E-16 96.0 6.4 89 2-120 104-195 (306)
118 2yhs_A FTSY, cell division pro 99.3 1.5E-12 5.1E-17 104.4 3.2 65 2-66 293-359 (503)
119 1s96_A Guanylate kinase, GMP k 99.3 2.4E-13 8.2E-18 98.7 -1.3 57 2-66 16-74 (219)
120 2qag_C Septin-7; cell cycle, c 99.2 4.7E-13 1.6E-17 105.6 -1.4 107 3-124 32-149 (418)
121 1oix_A RAS-related protein RAB 99.2 2.4E-12 8.3E-17 90.7 2.0 37 3-39 30-77 (191)
122 1odf_A YGR205W, hypothetical 3 99.2 5.7E-13 2E-17 100.5 -2.2 118 2-130 31-168 (290)
123 1qhl_A Protein (cell division 99.2 1.9E-13 6.6E-18 99.8 -4.9 58 5-62 30-91 (227)
124 2o8b_B DNA mismatch repair pro 99.2 4.3E-12 1.5E-16 109.4 2.5 90 2-130 789-884 (1022)
125 3tr0_A Guanylate kinase, GMP k 99.2 1.7E-12 5.8E-17 92.0 0.0 57 2-66 7-63 (205)
126 1iy2_A ATP-dependent metallopr 99.2 5.5E-13 1.9E-17 99.4 -2.7 97 4-114 75-190 (278)
127 1sq5_A Pantothenate kinase; P- 99.2 1E-11 3.5E-16 94.1 3.9 56 2-66 80-140 (308)
128 1ixz_A ATP-dependent metallopr 99.2 1E-12 3.6E-17 96.5 -1.6 97 4-114 51-166 (254)
129 3euj_A Chromosome partition pr 99.2 5.3E-12 1.8E-16 101.1 1.6 37 3-39 30-66 (483)
130 1nlf_A Regulatory protein REPA 99.2 3.6E-11 1.2E-15 89.6 5.7 95 3-125 31-144 (279)
131 4e22_A Cytidylate kinase; P-lo 99.1 7E-12 2.4E-16 92.5 1.3 58 3-63 28-96 (252)
132 3thx_A DNA mismatch repair pro 99.1 9.7E-12 3.3E-16 106.3 2.0 36 94-132 722-759 (934)
133 3thx_B DNA mismatch repair pro 99.1 2.7E-12 9.3E-17 109.4 -1.4 36 94-133 736-771 (918)
134 2f9l_A RAB11B, member RAS onco 99.1 5.7E-11 2E-15 83.9 4.6 37 3-39 6-53 (199)
135 1sxj_E Activator 1 40 kDa subu 99.1 7.6E-11 2.6E-15 90.0 4.7 108 5-133 39-152 (354)
136 1n0w_A DNA repair protein RAD5 99.0 2.3E-10 8E-15 82.7 5.7 57 2-61 24-87 (243)
137 3a00_A Guanylate kinase, GMP k 99.0 9.6E-11 3.3E-15 82.4 3.3 25 3-27 2-26 (186)
138 1t9h_A YLOQ, probable GTPase E 99.0 1.2E-11 3.9E-16 94.1 -1.8 61 3-68 174-237 (307)
139 2bdt_A BH3686; alpha-beta prot 99.0 1.5E-10 5E-15 81.3 4.0 35 1-38 1-35 (189)
140 3pih_A Uvrabc system protein A 99.0 6.4E-11 2.2E-15 101.0 1.9 111 17-135 383-505 (916)
141 4eun_A Thermoresistant glucoki 99.0 1.9E-10 6.5E-15 81.7 3.9 54 3-65 30-83 (200)
142 2cvh_A DNA repair and recombin 99.0 3.9E-10 1.3E-14 80.4 5.5 98 2-129 20-120 (220)
143 1udx_A The GTP-binding protein 98.9 1.4E-11 4.9E-16 97.1 -4.4 25 94-118 253-277 (416)
144 2oap_1 GSPE-2, type II secreti 98.9 4.5E-10 1.5E-14 90.6 3.9 37 2-38 260-296 (511)
145 2vp4_A Deoxynucleoside kinase; 98.9 5.2E-10 1.8E-14 81.2 3.1 60 2-65 20-85 (230)
146 1cke_A CK, MSSA, protein (cyti 98.9 1.2E-10 4.3E-15 83.6 -0.7 58 2-63 5-74 (227)
147 2vf7_A UVRA2, excinuclease ABC 98.9 1E-09 3.5E-14 93.0 4.5 119 12-135 272-420 (842)
148 2qag_B Septin-6, protein NEDD5 98.9 1.9E-10 6.4E-15 90.9 -0.4 51 4-66 44-94 (427)
149 1wb9_A DNA mismatch repair pro 98.9 5.1E-10 1.7E-14 94.5 2.1 24 3-26 608-631 (800)
150 3lnc_A Guanylate kinase, GMP k 98.9 6.5E-10 2.2E-14 80.5 2.3 25 2-26 27-52 (231)
151 3lda_A DNA repair protein RAD5 98.9 2.8E-09 9.5E-14 83.7 5.6 57 2-61 178-241 (400)
152 1kgd_A CASK, peripheral plasma 98.8 1.1E-09 3.6E-14 76.7 2.1 33 2-34 5-38 (180)
153 3cr8_A Sulfate adenylyltranfer 98.8 8.6E-10 2.9E-14 89.7 1.1 86 2-87 369-468 (552)
154 1ls1_A Signal recognition part 98.8 1.4E-08 4.6E-13 76.6 7.4 37 2-38 98-134 (295)
155 3uie_A Adenylyl-sulfate kinase 98.8 1.6E-09 5.6E-14 76.8 1.8 36 2-38 25-62 (200)
156 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 2.3E-09 8E-14 73.2 2.1 39 94-135 58-102 (148)
157 1rz3_A Hypothetical protein rb 98.7 3.2E-09 1.1E-13 75.4 2.4 37 2-38 22-58 (201)
158 3tqc_A Pantothenate kinase; bi 98.7 5E-09 1.7E-13 80.0 3.4 34 2-35 92-127 (321)
159 2j41_A Guanylate kinase; GMP, 98.7 5.1E-09 1.7E-13 73.9 3.1 30 2-31 6-35 (207)
160 1knq_A Gluconate kinase; ALFA/ 98.7 1E-08 3.5E-13 70.8 4.1 33 2-38 8-40 (175)
161 3ney_A 55 kDa erythrocyte memb 98.7 8.8E-09 3E-13 73.6 3.5 26 2-27 19-44 (197)
162 1in4_A RUVB, holliday junction 98.7 1.2E-09 4E-14 83.5 -1.9 35 3-37 52-90 (334)
163 1kag_A SKI, shikimate kinase I 98.7 8.3E-09 2.8E-13 71.0 2.5 28 1-28 3-30 (173)
164 3kta_A Chromosome segregation 98.6 8.7E-09 3E-13 71.6 2.4 30 4-33 28-57 (182)
165 2kjq_A DNAA-related protein; s 98.6 9.5E-09 3.2E-13 70.1 2.0 35 3-38 37-73 (149)
166 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2E-08 6.7E-13 78.6 3.9 36 2-37 20-67 (392)
167 2dhr_A FTSH; AAA+ protein, hex 98.6 5.4E-09 1.8E-13 84.1 0.7 97 4-114 66-181 (499)
168 3tau_A Guanylate kinase, GMP k 98.6 2.6E-08 8.9E-13 71.1 3.2 27 2-28 8-34 (208)
169 3ec2_A DNA replication protein 98.6 1E-08 3.5E-13 71.3 0.9 30 3-32 39-68 (180)
170 3kta_B Chromosome segregation 98.5 1.5E-08 5E-13 71.0 1.3 39 94-135 65-107 (173)
171 1zu4_A FTSY; GTPase, signal re 98.5 4.2E-08 1.4E-12 74.8 2.3 36 3-38 106-141 (320)
172 1jjv_A Dephospho-COA kinase; P 98.5 9.7E-08 3.3E-12 67.6 3.8 25 1-25 1-25 (206)
173 2www_A Methylmalonic aciduria 98.5 5.9E-08 2E-12 74.7 2.7 37 2-38 74-110 (349)
174 2o5v_A DNA replication and rep 98.4 9.6E-08 3.3E-12 73.9 2.1 40 94-136 266-314 (359)
175 2px0_A Flagellar biosynthesis 98.4 1.1E-07 3.8E-12 71.7 2.1 35 3-37 106-141 (296)
176 2pez_A Bifunctional 3'-phospho 98.4 1.6E-07 5.5E-12 65.1 2.6 35 2-37 5-41 (179)
177 1svm_A Large T antigen; AAA+ f 98.4 1.9E-07 6.4E-12 72.7 3.2 52 2-65 169-220 (377)
178 1w1w_A Structural maintenance 98.3 1.5E-07 5.2E-12 74.1 2.4 39 94-135 334-376 (430)
179 2r6f_A Excinuclease ABC subuni 98.3 2.9E-07 1E-11 78.8 4.1 52 82-136 487-546 (972)
180 4ad8_A DNA repair protein RECN 98.3 1.5E-07 5.2E-12 75.8 2.2 38 95-135 399-438 (517)
181 1mky_A Probable GTP-binding pr 98.3 5E-07 1.7E-11 71.3 5.1 36 3-38 181-228 (439)
182 2r6a_A DNAB helicase, replicat 98.3 5.1E-07 1.7E-11 71.6 5.1 107 3-121 204-323 (454)
183 2ygr_A Uvrabc system protein A 98.3 3.7E-07 1.3E-11 78.4 4.4 50 83-135 505-562 (993)
184 2qt1_A Nicotinamide riboside k 98.3 3.7E-07 1.3E-11 64.7 3.6 25 2-26 21-45 (207)
185 3m6a_A ATP-dependent protease 98.3 1.6E-07 5.4E-12 76.2 1.8 36 3-38 109-144 (543)
186 2if2_A Dephospho-COA kinase; a 98.3 2.8E-07 9.5E-12 65.0 2.7 22 3-24 2-23 (204)
187 1m7g_A Adenylylsulfate kinase; 98.3 2.1E-07 7.2E-12 66.3 2.0 36 2-37 25-62 (211)
188 2zej_A Dardarin, leucine-rich 98.3 4.2E-07 1.4E-11 63.0 3.4 25 2-26 2-26 (184)
189 3t61_A Gluconokinase; PSI-biol 98.3 4.1E-07 1.4E-11 64.2 3.2 30 4-37 20-49 (202)
190 2dr3_A UPF0273 protein PH0284; 98.3 3.7E-07 1.3E-11 65.7 2.8 55 3-62 24-79 (247)
191 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 5.3E-07 1.8E-11 61.3 3.1 21 4-24 25-45 (149)
192 2wjg_A FEOB, ferrous iron tran 98.2 9.4E-07 3.2E-11 61.0 4.2 23 3-25 8-30 (188)
193 2o5v_A DNA replication and rep 98.2 7E-07 2.4E-11 69.1 3.8 21 4-24 28-48 (359)
194 2dy1_A Elongation factor G; tr 98.2 5.1E-07 1.8E-11 74.9 2.8 59 3-66 10-70 (665)
195 2yvu_A Probable adenylyl-sulfa 98.2 6.8E-07 2.3E-11 62.2 3.0 33 2-34 13-45 (186)
196 2wji_A Ferrous iron transport 98.2 1.2E-06 4E-11 59.7 4.1 25 2-26 3-27 (165)
197 2qtf_A Protein HFLX, GTP-bindi 98.2 1.1E-06 3.7E-11 68.1 4.2 34 5-38 182-226 (364)
198 2p67_A LAO/AO transport system 98.2 5.5E-07 1.9E-11 69.0 2.5 35 3-37 57-91 (341)
199 2ohf_A Protein OLA1, GTP-bindi 98.2 1E-06 3.4E-11 69.0 3.9 36 2-37 22-68 (396)
200 1np6_A Molybdopterin-guanine d 98.2 5.9E-07 2E-11 62.8 2.3 37 1-37 5-44 (174)
201 3k1j_A LON protease, ATP-depen 98.1 1.5E-06 5.1E-11 71.2 4.1 35 3-37 61-96 (604)
202 2gj8_A MNME, tRNA modification 98.1 1.6E-06 5.5E-11 59.6 3.2 25 2-26 4-28 (172)
203 2zr9_A Protein RECA, recombina 98.1 3.6E-06 1.2E-10 64.8 5.4 33 3-35 62-94 (349)
204 3hr8_A Protein RECA; alpha and 98.1 1.2E-06 4.3E-11 67.6 2.6 56 3-65 62-118 (356)
205 3nwj_A ATSK2; P loop, shikimat 98.1 1.4E-06 4.8E-11 64.2 2.6 25 2-26 48-72 (250)
206 1jal_A YCHF protein; nucleotid 98.1 2.8E-06 9.4E-11 65.8 4.3 37 1-37 1-48 (363)
207 4ag6_A VIRB4 ATPase, type IV s 98.1 1.7E-06 6E-11 67.1 3.2 35 3-37 36-70 (392)
208 4eaq_A DTMP kinase, thymidylat 98.1 2.1E-06 7.3E-11 62.2 3.5 33 2-35 26-58 (229)
209 2ffh_A Protein (FFH); SRP54, s 98.1 1.8E-06 6E-11 68.2 3.2 36 3-38 99-134 (425)
210 2qor_A Guanylate kinase; phosp 98.1 2E-06 6.8E-11 60.9 3.0 24 3-26 13-36 (204)
211 3cm0_A Adenylate kinase; ATP-b 98.1 1.6E-06 5.6E-11 60.0 2.5 23 2-24 4-26 (186)
212 3vaa_A Shikimate kinase, SK; s 98.1 1.9E-06 6.6E-11 60.7 2.8 24 3-26 26-49 (199)
213 3qks_A DNA double-strand break 98.0 2.5E-06 8.5E-11 60.7 3.2 20 4-23 25-44 (203)
214 3r20_A Cytidylate kinase; stru 98.0 1.3E-06 4.6E-11 63.7 1.7 31 3-33 10-43 (233)
215 1ly1_A Polynucleotide kinase; 98.0 3.2E-06 1.1E-10 57.9 3.6 24 1-24 1-24 (181)
216 4ad8_A DNA repair protein RECN 98.0 7.7E-07 2.6E-11 71.7 0.4 22 4-25 62-83 (517)
217 3lxx_A GTPase IMAP family memb 98.0 4E-06 1.4E-10 60.6 4.1 29 3-31 30-58 (239)
218 1j8m_F SRP54, signal recogniti 98.0 1.7E-06 5.8E-11 65.2 2.1 36 3-38 99-134 (297)
219 1w1w_A Structural maintenance 98.0 1.6E-06 5.5E-11 68.2 2.0 28 3-30 27-54 (430)
220 1qhx_A CPT, protein (chloramph 98.0 3.5E-06 1.2E-10 57.9 3.3 26 1-26 2-27 (178)
221 3t34_A Dynamin-related protein 98.0 3.6E-06 1.2E-10 64.7 3.3 32 4-35 36-69 (360)
222 3kb2_A SPBC2 prophage-derived 98.0 3.8E-06 1.3E-10 57.2 3.1 23 4-26 3-25 (173)
223 1q3t_A Cytidylate kinase; nucl 97.9 2.5E-06 8.5E-11 61.7 1.7 32 2-33 16-50 (236)
224 2qag_A Septin-2, protein NEDD5 97.9 4.8E-06 1.6E-10 64.3 3.2 26 3-28 38-63 (361)
225 1ex7_A Guanylate kinase; subst 97.9 5.4E-06 1.8E-10 58.5 3.1 20 5-24 4-23 (186)
226 3auy_A DNA double-strand break 97.9 3.1E-06 1.1E-10 65.4 2.0 39 94-135 281-326 (371)
227 1gtv_A TMK, thymidylate kinase 97.9 1.3E-06 4.6E-11 61.7 -0.2 26 4-29 2-27 (214)
228 1ega_A Protein (GTP-binding pr 97.9 6.4E-06 2.2E-10 62.0 3.5 24 3-26 9-32 (301)
229 1f6b_A SAR1; gtpases, N-termin 97.9 9.6E-06 3.3E-10 56.9 4.2 36 3-38 26-69 (198)
230 2p5t_B PEZT; postsegregational 97.9 4.5E-06 1.5E-10 61.1 2.5 33 3-37 33-65 (253)
231 1sxj_C Activator 1 40 kDa subu 97.9 3E-06 1E-10 64.4 1.6 31 5-35 49-79 (340)
232 3ihw_A Centg3; RAS, centaurin, 97.9 1.6E-05 5.6E-10 55.0 5.2 37 2-38 20-65 (184)
233 3k53_A Ferrous iron transport 97.9 6.2E-06 2.1E-10 60.9 3.2 25 3-27 4-28 (271)
234 1vht_A Dephospho-COA kinase; s 97.9 7.8E-06 2.7E-10 58.2 3.6 23 2-24 4-26 (218)
235 3lw7_A Adenylate kinase relate 97.9 7.1E-06 2.4E-10 55.6 3.0 19 4-22 3-21 (179)
236 2jaq_A Deoxyguanosine kinase; 97.9 8.1E-06 2.8E-10 57.0 3.2 23 4-26 2-24 (205)
237 3ake_A Cytidylate kinase; CMP 97.9 8.2E-06 2.8E-10 57.2 3.2 26 1-26 1-26 (208)
238 1ypw_A Transitional endoplasmi 97.9 4.2E-06 1.4E-10 70.8 1.9 33 3-37 239-271 (806)
239 1via_A Shikimate kinase; struc 97.9 7.9E-06 2.7E-10 56.2 3.0 23 4-26 6-28 (175)
240 1uf9_A TT1252 protein; P-loop, 97.9 8.4E-06 2.9E-10 57.0 3.2 30 3-37 9-38 (203)
241 1m2o_B GTP-binding protein SAR 97.9 9.7E-06 3.3E-10 56.4 3.5 35 3-37 24-66 (190)
242 3kl4_A SRP54, signal recogniti 97.8 6.8E-06 2.3E-10 65.0 2.7 36 3-38 98-133 (433)
243 3trf_A Shikimate kinase, SK; a 97.8 9.7E-06 3.3E-10 56.0 3.1 24 3-26 6-29 (185)
244 1e6c_A Shikimate kinase; phosp 97.8 1.1E-05 3.8E-10 55.0 3.2 25 1-25 1-25 (173)
245 2rhm_A Putative kinase; P-loop 97.8 1.2E-05 4E-10 55.8 3.3 25 2-26 5-29 (193)
246 1kht_A Adenylate kinase; phosp 97.8 1.2E-05 4.2E-10 55.5 3.2 24 3-26 4-27 (192)
247 2iyv_A Shikimate kinase, SK; t 97.8 1.1E-05 3.8E-10 55.7 3.0 25 1-25 1-25 (184)
248 2ze6_A Isopentenyl transferase 97.8 1.2E-05 4E-10 59.0 3.2 23 4-26 3-25 (253)
249 3b1v_A Ferrous iron uptake tra 97.8 1.5E-05 5.1E-10 59.3 3.6 25 2-26 3-27 (272)
250 3q72_A GTP-binding protein RAD 97.8 1.1E-05 3.9E-10 54.1 2.7 24 3-26 3-26 (166)
251 1qf9_A UMP/CMP kinase, protein 97.8 1.4E-05 4.8E-10 55.2 3.3 25 1-25 5-29 (194)
252 1lv7_A FTSH; alpha/beta domain 97.8 1.2E-05 3.9E-10 58.7 2.9 33 4-38 47-79 (257)
253 2ce2_X GTPase HRAS; signaling 97.8 1.3E-05 4.6E-10 53.4 2.9 23 3-25 4-26 (166)
254 2erx_A GTP-binding protein DI- 97.8 1.9E-05 6.4E-10 53.1 3.6 24 2-25 3-26 (172)
255 3q85_A GTP-binding protein REM 97.8 1.9E-05 6.6E-10 53.2 3.6 25 2-26 2-26 (169)
256 2nzj_A GTP-binding protein REM 97.8 1.9E-05 6.4E-10 53.4 3.5 25 2-26 4-28 (175)
257 1fzq_A ADP-ribosylation factor 97.7 1.5E-05 5.2E-10 54.9 3.0 30 2-31 16-49 (181)
258 1z2a_A RAS-related protein RAB 97.7 1.7E-05 5.8E-10 53.2 3.1 24 2-25 5-28 (168)
259 1tev_A UMP-CMP kinase; ploop, 97.7 1.9E-05 6.5E-10 54.6 3.4 23 2-24 3-25 (196)
260 1xjc_A MOBB protein homolog; s 97.7 1.3E-05 4.5E-10 55.7 2.6 27 3-29 5-31 (169)
261 2ged_A SR-beta, signal recogni 97.7 1.5E-05 5.2E-10 55.1 2.8 24 3-26 49-72 (193)
262 1nks_A Adenylate kinase; therm 97.7 1.7E-05 5.8E-10 54.8 2.9 24 4-27 3-26 (194)
263 1y63_A LMAJ004144AAA protein; 97.7 1.8E-05 6.2E-10 55.0 3.1 23 3-25 11-33 (184)
264 3tw8_B RAS-related protein RAB 97.7 2.1E-05 7.1E-10 53.4 3.3 24 3-26 10-33 (181)
265 3iij_A Coilin-interacting nucl 97.7 1.9E-05 6.6E-10 54.4 3.1 22 3-24 12-33 (180)
266 1kao_A RAP2A; GTP-binding prot 97.7 1.9E-05 6.6E-10 52.7 3.1 23 3-25 4-26 (167)
267 2bwj_A Adenylate kinase 5; pho 97.7 1.4E-05 4.8E-10 55.6 2.3 25 2-26 12-36 (199)
268 2dyk_A GTP-binding protein; GT 97.7 2.2E-05 7.4E-10 52.4 3.1 24 3-26 2-25 (161)
269 1gvn_B Zeta; postsegregational 97.7 2.1E-05 7.2E-10 58.8 3.2 33 3-37 34-66 (287)
270 1u8z_A RAS-related protein RAL 97.7 2.2E-05 7.5E-10 52.5 3.0 24 2-25 4-27 (168)
271 1z08_A RAS-related protein RAB 97.7 2.4E-05 8.1E-10 52.7 3.2 24 2-25 6-29 (170)
272 1c1y_A RAS-related protein RAP 97.7 2.4E-05 8E-10 52.4 3.1 23 3-25 4-26 (167)
273 2z0h_A DTMP kinase, thymidylat 97.7 2.3E-05 8E-10 54.4 3.2 23 4-26 2-24 (197)
274 2plr_A DTMP kinase, probable t 97.7 2.8E-05 9.5E-10 54.5 3.6 27 2-28 4-30 (213)
275 1z0j_A RAB-22, RAS-related pro 97.7 2.3E-05 8E-10 52.6 3.1 24 3-26 7-30 (170)
276 3t1o_A Gliding protein MGLA; G 97.7 2.6E-05 8.8E-10 53.7 3.3 26 2-27 14-39 (198)
277 1ek0_A Protein (GTP-binding pr 97.7 2.5E-05 8.6E-10 52.4 3.1 23 3-25 4-26 (170)
278 2lkc_A Translation initiation 97.7 2.7E-05 9.2E-10 52.9 3.3 24 2-25 8-31 (178)
279 1wms_A RAB-9, RAB9, RAS-relate 97.7 2.4E-05 8.2E-10 53.1 3.1 23 3-25 8-30 (177)
280 1ky3_A GTP-binding protein YPT 97.7 2.4E-05 8.2E-10 53.1 3.1 24 2-25 8-31 (182)
281 1moz_A ARL1, ADP-ribosylation 97.7 1.7E-05 5.7E-10 54.2 2.2 23 2-24 18-40 (183)
282 2v54_A DTMP kinase, thymidylat 97.7 2.5E-05 8.7E-10 54.6 3.2 24 3-26 5-28 (204)
283 4dsu_A GTPase KRAS, isoform 2B 97.7 2.7E-05 9.3E-10 53.3 3.2 24 2-25 4-27 (189)
284 1g16_A RAS-related protein SEC 97.7 2.4E-05 8.2E-10 52.6 2.8 24 2-25 3-26 (170)
285 2wwf_A Thymidilate kinase, put 97.7 2.4E-05 8.3E-10 55.0 3.0 25 2-26 10-34 (212)
286 3fb4_A Adenylate kinase; psych 97.7 2.7E-05 9.1E-10 55.2 3.2 22 4-25 2-23 (216)
287 1r2q_A RAS-related protein RAB 97.7 2.8E-05 9.6E-10 52.1 3.1 23 2-24 6-28 (170)
288 2hxs_A RAB-26, RAS-related pro 97.6 3.4E-05 1.2E-09 52.4 3.5 24 2-25 6-29 (178)
289 3i8s_A Ferrous iron transport 97.6 2.9E-05 9.9E-10 57.5 3.4 25 2-26 3-27 (274)
290 2cxx_A Probable GTP-binding pr 97.6 2.3E-05 8E-10 53.7 2.7 24 3-26 2-25 (190)
291 3pqc_A Probable GTP-binding pr 97.6 2.2E-05 7.6E-10 54.0 2.6 25 2-26 23-47 (195)
292 4fcw_A Chaperone protein CLPB; 97.6 2.4E-05 8.4E-10 58.2 2.9 32 3-34 48-79 (311)
293 2fn4_A P23, RAS-related protei 97.6 2.7E-05 9.2E-10 52.8 2.9 24 2-25 9-32 (181)
294 1svi_A GTP-binding protein YSX 97.6 2.5E-05 8.5E-10 54.0 2.7 23 3-25 24-46 (195)
295 3cbq_A GTP-binding protein REM 97.6 2.9E-05 9.8E-10 54.3 3.1 24 2-25 23-46 (195)
296 2oil_A CATX-8, RAS-related pro 97.6 2.9E-05 9.9E-10 53.7 3.0 23 3-25 26-48 (193)
297 1ltq_A Polynucleotide kinase; 97.6 3.5E-05 1.2E-09 57.3 3.6 24 1-24 1-24 (301)
298 3clv_A RAB5 protein, putative; 97.6 3E-05 1E-09 53.4 3.1 23 3-25 8-30 (208)
299 3dl0_A Adenylate kinase; phosp 97.6 3.1E-05 1.1E-09 54.9 3.2 22 4-25 2-23 (216)
300 2c95_A Adenylate kinase 1; tra 97.6 2.9E-05 1E-09 53.9 2.9 24 3-26 10-33 (196)
301 1upt_A ARL1, ADP-ribosylation 97.6 3.3E-05 1.1E-09 52.0 3.0 23 2-24 7-29 (171)
302 3t5d_A Septin-7; GTP-binding p 97.6 3.1E-05 1.1E-09 57.2 3.1 24 2-25 8-31 (274)
303 2e87_A Hypothetical protein PH 97.6 2.9E-05 1E-09 59.6 3.0 24 3-26 168-191 (357)
304 3bc1_A RAS-related protein RAB 97.6 3.4E-05 1.2E-09 52.8 3.0 23 3-25 12-34 (195)
305 2w58_A DNAI, primosome compone 97.6 3.2E-05 1.1E-09 54.2 2.9 32 3-34 55-86 (202)
306 3lxw_A GTPase IMAP family memb 97.6 4.1E-05 1.4E-09 55.8 3.5 24 3-26 22-45 (247)
307 2a9k_A RAS-related protein RAL 97.6 3.6E-05 1.2E-09 52.5 3.0 23 3-25 19-41 (187)
308 1z0f_A RAB14, member RAS oncog 97.6 3.9E-05 1.3E-09 51.9 3.1 24 3-26 16-39 (179)
309 2pbr_A DTMP kinase, thymidylat 97.6 3.9E-05 1.3E-09 53.0 3.2 23 4-26 2-24 (195)
310 3con_A GTPase NRAS; structural 97.6 3.9E-05 1.3E-09 52.8 3.1 23 3-25 22-44 (190)
311 3auy_A DNA double-strand break 97.6 3.2E-05 1.1E-09 59.7 2.9 20 4-23 27-46 (371)
312 2y8e_A RAB-protein 6, GH09086P 97.6 3.6E-05 1.2E-09 52.1 2.8 23 3-25 15-37 (179)
313 2g6b_A RAS-related protein RAB 97.6 3.9E-05 1.3E-09 52.1 3.0 23 3-25 11-33 (180)
314 1ksh_A ARF-like protein 2; sma 97.6 4.7E-05 1.6E-09 52.2 3.4 24 3-26 19-42 (186)
315 2cdn_A Adenylate kinase; phosp 97.6 4.3E-05 1.5E-09 53.6 3.3 24 3-26 21-44 (201)
316 1r8s_A ADP-ribosylation factor 97.6 3.6E-05 1.2E-09 51.5 2.8 22 3-24 1-22 (164)
317 2pt5_A Shikimate kinase, SK; a 97.6 4.5E-05 1.5E-09 51.8 3.2 23 4-26 2-24 (168)
318 1ukz_A Uridylate kinase; trans 97.6 4.6E-05 1.6E-09 53.4 3.4 23 3-25 16-38 (203)
319 2cjw_A GTP-binding protein GEM 97.6 4.1E-05 1.4E-09 53.4 3.0 23 2-24 6-28 (192)
320 2grj_A Dephospho-COA kinase; T 97.6 4.8E-05 1.6E-09 53.7 3.4 23 3-25 13-35 (192)
321 2bme_A RAB4A, RAS-related prot 97.6 3.9E-05 1.3E-09 52.5 2.8 23 3-25 11-33 (186)
322 1zak_A Adenylate kinase; ATP:A 97.6 3.6E-05 1.2E-09 54.9 2.7 24 3-26 6-29 (222)
323 1uj2_A Uridine-cytidine kinase 97.6 4.7E-05 1.6E-09 55.5 3.4 23 3-25 23-45 (252)
324 2efe_B Small GTP-binding prote 97.5 4.7E-05 1.6E-09 51.8 3.2 23 3-25 13-35 (181)
325 1m7b_A RND3/RHOE small GTP-bin 97.5 4.1E-05 1.4E-09 52.7 2.8 24 2-25 7-30 (184)
326 1zd8_A GTP:AMP phosphotransfer 97.5 4E-05 1.4E-09 54.8 2.9 23 3-25 8-30 (227)
327 3kkq_A RAS-related protein M-R 97.5 4.4E-05 1.5E-09 52.2 3.0 24 2-25 18-41 (183)
328 3a1s_A Iron(II) transport prot 97.5 5.4E-05 1.8E-09 55.7 3.6 25 2-26 5-29 (258)
329 1zbd_A Rabphilin-3A; G protein 97.5 5.7E-05 1.9E-09 52.6 3.6 25 2-26 8-32 (203)
330 2gf9_A RAS-related protein RAB 97.5 4.6E-05 1.6E-09 52.5 3.0 24 3-26 23-46 (189)
331 4bas_A ADP-ribosylation factor 97.5 5.6E-05 1.9E-09 52.2 3.5 24 2-25 17-40 (199)
332 1vg8_A RAS-related protein RAB 97.5 4.8E-05 1.6E-09 53.0 3.1 25 2-26 8-32 (207)
333 3tkl_A RAS-related protein RAB 97.5 5E-05 1.7E-09 52.4 3.1 24 3-26 17-40 (196)
334 2dby_A GTP-binding protein; GD 97.5 3.5E-05 1.2E-09 59.7 2.6 23 3-25 2-24 (368)
335 3cf0_A Transitional endoplasmi 97.5 4.4E-05 1.5E-09 57.2 3.0 33 3-37 50-82 (301)
336 1nrj_B SR-beta, signal recogni 97.5 4.2E-05 1.4E-09 53.9 2.8 24 3-26 13-36 (218)
337 2bov_A RAla, RAS-related prote 97.5 4.7E-05 1.6E-09 52.9 3.0 23 3-25 15-37 (206)
338 2ius_A DNA translocase FTSK; n 97.5 4.3E-05 1.5E-09 61.6 3.1 36 3-38 168-205 (512)
339 2il1_A RAB12; G-protein, GDP, 97.5 5.7E-05 2E-09 52.4 3.4 25 2-26 26-50 (192)
340 2h57_A ADP-ribosylation factor 97.5 4.4E-05 1.5E-09 52.7 2.8 25 2-26 21-45 (190)
341 3iby_A Ferrous iron transport 97.5 4.4E-05 1.5E-09 56.1 2.9 24 3-26 2-25 (256)
342 3llu_A RAS-related GTP-binding 97.5 5.7E-05 2E-09 52.5 3.3 25 2-26 20-44 (196)
343 2gf0_A GTP-binding protein DI- 97.5 4.5E-05 1.5E-09 52.7 2.8 22 3-24 9-30 (199)
344 2ga8_A Hypothetical 39.9 kDa p 97.5 3.4E-05 1.2E-09 59.6 2.3 25 3-27 25-49 (359)
345 1nn5_A Similar to deoxythymidy 97.5 4.6E-05 1.6E-09 53.6 2.8 24 3-26 10-33 (215)
346 2xau_A PRE-mRNA-splicing facto 97.5 2.4E-05 8E-10 66.0 1.5 32 94-128 191-223 (773)
347 3dz8_A RAS-related protein RAB 97.5 4.5E-05 1.5E-09 52.7 2.7 23 3-25 24-46 (191)
348 2fg5_A RAB-22B, RAS-related pr 97.5 4.7E-05 1.6E-09 52.8 2.8 23 3-25 24-46 (192)
349 2a5j_A RAS-related protein RAB 97.5 5.4E-05 1.8E-09 52.3 3.0 23 3-25 22-44 (191)
350 1z06_A RAS-related protein RAB 97.5 5.6E-05 1.9E-09 52.1 3.1 23 3-25 21-43 (189)
351 1mh1_A RAC1; GTP-binding, GTPa 97.5 5.6E-05 1.9E-09 51.5 3.0 23 2-24 5-27 (186)
352 1zj6_A ADP-ribosylation factor 97.5 6.1E-05 2.1E-09 51.8 3.2 24 2-25 16-39 (187)
353 2xb4_A Adenylate kinase; ATP-b 97.5 5.9E-05 2E-09 54.0 3.2 23 4-26 2-24 (223)
354 3d3q_A TRNA delta(2)-isopenten 97.5 6.5E-05 2.2E-09 57.7 3.5 26 1-26 6-31 (340)
355 2o52_A RAS-related protein RAB 97.5 6.1E-05 2.1E-09 52.6 3.2 23 3-25 26-48 (200)
356 2f6r_A COA synthase, bifunctio 97.5 5.6E-05 1.9E-09 56.2 3.1 22 3-24 76-97 (281)
357 2ew1_A RAS-related protein RAB 97.5 5E-05 1.7E-09 53.5 2.7 23 3-25 27-49 (201)
358 2vli_A Antibiotic resistance p 97.5 4.1E-05 1.4E-09 52.6 2.2 22 4-25 7-28 (183)
359 3t5g_A GTP-binding protein RHE 97.5 6.4E-05 2.2E-09 51.2 3.2 23 2-24 6-28 (181)
360 1zd9_A ADP-ribosylation factor 97.5 6.2E-05 2.1E-09 52.0 3.1 24 2-25 22-45 (188)
361 3reg_A RHO-like small GTPase; 97.5 6.2E-05 2.1E-09 52.1 3.1 23 3-25 24-46 (194)
362 1aky_A Adenylate kinase; ATP:A 97.5 6.3E-05 2.1E-09 53.5 3.2 24 3-26 5-28 (220)
363 3oes_A GTPase rhebl1; small GT 97.5 5.5E-05 1.9E-09 52.8 2.8 25 2-26 24-48 (201)
364 2qu8_A Putative nucleolar GTP- 97.5 6.8E-05 2.3E-09 53.5 3.4 25 2-26 29-53 (228)
365 2h17_A ADP-ribosylation factor 97.5 5.8E-05 2E-09 51.8 2.7 24 2-25 21-44 (181)
366 1x3s_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 51.5 3.1 23 3-25 16-38 (195)
367 2fv8_A H6, RHO-related GTP-bin 97.5 6.1E-05 2.1E-09 52.9 2.9 24 2-25 25-48 (207)
368 2iwr_A Centaurin gamma 1; ANK 97.5 4.8E-05 1.6E-09 51.8 2.3 24 2-25 7-30 (178)
369 4djt_A GTP-binding nuclear pro 97.5 3.9E-05 1.4E-09 54.1 1.9 24 2-25 11-34 (218)
370 3tlx_A Adenylate kinase 2; str 97.5 7.4E-05 2.5E-09 54.3 3.4 22 3-24 30-51 (243)
371 2xtp_A GTPase IMAP family memb 97.5 6.8E-05 2.3E-09 54.6 3.2 24 3-26 23-46 (260)
372 2q3h_A RAS homolog gene family 97.5 8.2E-05 2.8E-09 51.7 3.5 24 2-25 20-43 (201)
373 1e4v_A Adenylate kinase; trans 97.5 6.2E-05 2.1E-09 53.4 2.9 22 5-26 3-24 (214)
374 2f7s_A C25KG, RAS-related prot 97.5 8.3E-05 2.8E-09 52.3 3.5 23 3-25 26-48 (217)
375 1a7j_A Phosphoribulokinase; tr 97.5 3E-05 1E-09 58.1 1.3 24 3-26 6-29 (290)
376 2bcg_Y Protein YP2, GTP-bindin 97.5 5.9E-05 2E-09 52.7 2.7 23 3-25 9-31 (206)
377 2atv_A RERG, RAS-like estrogen 97.5 7E-05 2.4E-09 52.0 3.1 23 3-25 29-51 (196)
378 1wf3_A GTP-binding protein; GT 97.5 7E-05 2.4E-09 56.3 3.3 22 4-25 9-30 (301)
379 2p5s_A RAS and EF-hand domain 97.5 6.9E-05 2.4E-09 52.2 3.0 23 3-25 29-51 (199)
380 3bos_A Putative DNA replicatio 97.4 5.6E-05 1.9E-09 53.7 2.6 25 3-27 53-77 (242)
381 3crm_A TRNA delta(2)-isopenten 97.4 8.2E-05 2.8E-09 56.7 3.6 26 1-26 4-29 (323)
382 3bwd_D RAC-like GTP-binding pr 97.4 6.5E-05 2.2E-09 51.1 2.8 23 3-25 9-31 (182)
383 2j1l_A RHO-related GTP-binding 97.4 8.1E-05 2.8E-09 52.6 3.4 23 3-25 35-57 (214)
384 1gwn_A RHO-related GTP-binding 97.4 6.6E-05 2.2E-09 53.0 2.8 24 2-25 28-51 (205)
385 3cph_A RAS-related protein SEC 97.4 7.2E-05 2.5E-09 52.3 3.0 23 3-25 21-43 (213)
386 2b6h_A ADP-ribosylation factor 97.4 7.4E-05 2.5E-09 51.9 3.0 24 2-25 29-52 (192)
387 2fu5_C RAS-related protein RAB 97.4 5.1E-05 1.7E-09 51.8 2.1 24 2-25 8-31 (183)
388 4dhe_A Probable GTP-binding pr 97.4 3.2E-05 1.1E-09 54.7 1.1 24 3-26 30-53 (223)
389 3c5c_A RAS-like protein 12; GD 97.4 8.1E-05 2.8E-09 51.4 3.2 24 2-25 21-44 (187)
390 2g3y_A GTP-binding protein GEM 97.4 9.5E-05 3.3E-09 52.7 3.5 23 3-25 38-60 (211)
391 2gco_A H9, RHO-related GTP-bin 97.4 7.2E-05 2.5E-09 52.2 2.8 24 2-25 25-48 (201)
392 1zuh_A Shikimate kinase; alpha 97.4 9.3E-05 3.2E-09 50.3 3.2 22 4-25 9-30 (168)
393 1fnn_A CDC6P, cell division co 97.4 8.3E-05 2.8E-09 56.7 3.3 33 4-36 46-80 (389)
394 2qby_A CDC6 homolog 1, cell di 97.4 5.6E-05 1.9E-09 57.4 2.2 27 3-29 46-72 (386)
395 3iev_A GTP-binding protein ERA 97.4 8.7E-05 3E-09 55.9 3.3 24 3-26 11-34 (308)
396 2fh5_B SR-beta, signal recogni 97.4 7.7E-05 2.6E-09 52.4 2.8 24 2-25 7-30 (214)
397 3b9p_A CG5977-PA, isoform A; A 97.4 7.5E-05 2.6E-09 55.3 2.8 24 3-26 55-78 (297)
398 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 9.2E-05 3.1E-09 54.3 3.1 23 3-25 5-27 (260)
399 1l8q_A Chromosomal replication 97.4 6.8E-05 2.3E-09 56.4 2.3 29 4-32 39-67 (324)
400 2atx_A Small GTP binding prote 97.3 0.0001 3.6E-09 50.8 2.9 23 3-25 19-41 (194)
401 3cnl_A YLQF, putative uncharac 97.3 0.00011 3.9E-09 54.2 3.2 26 3-28 100-125 (262)
402 2wsm_A Hydrogenase expression/ 97.3 9.8E-05 3.4E-09 52.2 2.8 24 3-26 31-54 (221)
403 2hup_A RAS-related protein RAB 97.3 0.00011 3.7E-09 51.5 2.9 24 2-25 29-52 (201)
404 2x77_A ADP-ribosylation factor 97.3 8.1E-05 2.8E-09 51.2 2.2 23 2-24 22-44 (189)
405 3q3j_B RHO-related GTP-binding 97.3 0.00011 3.9E-09 51.9 3.0 24 2-25 27-50 (214)
406 1jbk_A CLPB protein; beta barr 97.3 0.00013 4.5E-09 49.6 3.2 24 3-26 44-67 (195)
407 3be4_A Adenylate kinase; malar 97.3 0.00012 4E-09 52.2 2.9 23 4-26 7-29 (217)
408 1h65_A Chloroplast outer envel 97.3 0.00013 4.4E-09 53.7 3.2 24 3-26 40-63 (270)
409 1jwy_B Dynamin A GTPase domain 97.3 0.00012 4E-09 54.7 2.9 24 3-26 25-48 (315)
410 3def_A T7I23.11 protein; chlor 97.3 0.00014 4.8E-09 53.3 3.2 24 3-26 37-60 (262)
411 3sr0_A Adenylate kinase; phosp 97.3 0.00014 4.6E-09 51.9 3.0 22 5-26 3-24 (206)
412 2ce7_A Cell division protein F 97.3 0.00012 4E-09 58.6 2.9 24 3-26 50-73 (476)
413 2yc2_C IFT27, small RAB-relate 97.3 5.7E-05 1.9E-09 52.5 1.0 24 2-25 20-43 (208)
414 3cpj_B GTP-binding protein YPT 97.3 0.00014 4.9E-09 51.6 3.1 23 3-25 14-36 (223)
415 4hlc_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 51.3 3.4 27 1-27 1-27 (205)
416 4gzl_A RAS-related C3 botulinu 97.3 0.00013 4.5E-09 51.1 2.7 22 3-24 31-52 (204)
417 2hf9_A Probable hydrogenase ni 97.3 0.00015 5.2E-09 51.4 3.1 24 3-26 39-62 (226)
418 2aka_B Dynamin-1; fusion prote 97.3 0.00012 4.3E-09 54.0 2.7 24 3-26 27-50 (299)
419 3umf_A Adenylate kinase; rossm 97.3 0.00019 6.4E-09 51.7 3.5 22 4-25 31-52 (217)
420 1ak2_A Adenylate kinase isoenz 97.3 0.00017 5.7E-09 51.9 3.2 24 3-26 17-40 (233)
421 2h92_A Cytidylate kinase; ross 97.3 0.00016 5.4E-09 51.2 3.1 23 3-25 4-26 (219)
422 3llm_A ATP-dependent RNA helic 97.2 0.00017 5.8E-09 51.9 3.1 21 3-23 77-97 (235)
423 3r7w_A Gtpase1, GTP-binding pr 97.2 0.00022 7.6E-09 53.6 3.7 24 2-25 3-26 (307)
424 4dcu_A GTP-binding protein ENG 97.2 0.00014 4.7E-09 57.6 2.6 23 3-25 24-46 (456)
425 2j0v_A RAC-like GTP-binding pr 97.2 0.00017 5.9E-09 50.5 2.8 24 2-25 9-32 (212)
426 3foz_A TRNA delta(2)-isopenten 97.2 0.00024 8.1E-09 53.9 3.6 24 3-26 11-34 (316)
427 1njg_A DNA polymerase III subu 97.2 0.00022 7.4E-09 50.2 3.2 23 4-26 47-69 (250)
428 3gj0_A GTP-binding nuclear pro 97.2 0.00013 4.6E-09 51.5 2.0 23 2-24 15-38 (221)
429 2p65_A Hypothetical protein PF 97.2 0.00016 5.4E-09 49.2 2.3 25 3-27 44-68 (187)
430 2z4s_A Chromosomal replication 97.2 0.00018 6E-09 56.8 2.6 23 4-26 132-154 (440)
431 3h4m_A Proteasome-activating n 97.2 0.00023 8E-09 52.2 3.1 24 3-26 52-75 (285)
432 3tqf_A HPR(Ser) kinase; transf 97.1 0.00025 8.5E-09 49.6 2.9 23 2-24 16-38 (181)
433 1ko7_A HPR kinase/phosphatase; 97.1 0.00025 8.7E-09 53.8 3.2 23 2-24 144-166 (314)
434 3exa_A TRNA delta(2)-isopenten 97.1 0.00031 1.1E-08 53.4 3.6 24 3-26 4-27 (322)
435 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00029 9.8E-09 50.9 3.2 23 4-26 41-63 (262)
436 3l0i_B RAS-related protein RAB 97.1 6.1E-05 2.1E-09 52.5 -0.4 24 3-26 34-57 (199)
437 2qmh_A HPR kinase/phosphorylas 97.1 0.00028 9.6E-09 50.3 3.0 23 3-25 35-57 (205)
438 4a1f_A DNAB helicase, replicat 97.1 0.0011 3.9E-08 50.7 6.6 34 3-36 47-80 (338)
439 3ice_A Transcription terminati 97.1 0.00022 7.7E-09 55.8 2.6 26 2-27 174-199 (422)
440 3zvl_A Bifunctional polynucleo 97.1 0.00027 9.1E-09 55.4 3.0 23 3-25 259-281 (416)
441 3p32_A Probable GTPase RV1496/ 97.1 0.00029 1E-08 54.0 3.1 25 2-26 79-103 (355)
442 2hjg_A GTP-binding protein ENG 97.1 0.00024 8.3E-09 55.9 2.7 24 2-25 3-26 (436)
443 4edh_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 49.8 3.4 27 2-28 6-32 (213)
444 3a8t_A Adenylate isopentenyltr 97.1 0.00044 1.5E-08 53.0 3.9 24 3-26 41-64 (339)
445 4i1u_A Dephospho-COA kinase; s 97.0 0.00036 1.2E-08 50.0 3.1 22 3-24 10-31 (210)
446 1wxq_A GTP-binding protein; st 97.0 0.00031 1E-08 54.9 3.0 24 3-26 1-24 (397)
447 1sxj_D Activator 1 41 kDa subu 97.0 0.00028 9.7E-09 53.1 2.7 24 4-27 60-83 (353)
448 3gmt_A Adenylate kinase; ssgci 97.0 0.00036 1.2E-08 50.7 3.1 21 5-25 11-31 (230)
449 3n70_A Transport activator; si 97.0 0.00047 1.6E-08 46.0 3.3 29 4-32 26-54 (145)
450 3th5_A RAS-related C3 botulinu 96.1 0.0001 3.5E-09 51.5 0.0 22 3-24 31-52 (204)
451 3dm5_A SRP54, signal recogniti 97.0 0.00038 1.3E-08 55.2 3.1 33 3-35 101-133 (443)
452 3v9p_A DTMP kinase, thymidylat 97.0 0.00031 1E-08 50.9 2.4 25 3-27 26-50 (227)
453 2chg_A Replication factor C sm 97.0 0.00043 1.5E-08 48.1 3.0 23 4-26 40-62 (226)
454 3geh_A MNME, tRNA modification 97.0 0.00035 1.2E-08 55.6 2.8 23 3-25 225-247 (462)
455 2v3c_C SRP54, signal recogniti 97.0 0.00016 5.6E-09 57.1 0.9 33 3-35 100-132 (432)
456 2q6t_A DNAB replication FORK h 97.0 0.0026 8.8E-08 50.1 7.7 110 3-121 201-320 (444)
457 2ocp_A DGK, deoxyguanosine kin 97.0 0.00046 1.6E-08 49.8 3.2 24 3-26 3-26 (241)
458 3lv8_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 50.4 3.0 26 3-28 28-53 (236)
459 2r62_A Cell division protease 97.0 0.00019 6.6E-09 52.3 1.1 22 4-25 46-67 (268)
460 1p5z_B DCK, deoxycytidine kina 97.0 0.00032 1.1E-08 51.3 2.3 24 3-26 25-48 (263)
461 1puj_A YLQF, conserved hypothe 96.9 0.00062 2.1E-08 50.7 3.5 24 3-26 121-144 (282)
462 4tmk_A Protein (thymidylate ki 96.9 0.00052 1.8E-08 49.1 2.9 27 2-28 3-29 (213)
463 1d2n_A N-ethylmaleimide-sensit 96.9 0.00063 2.2E-08 49.8 3.4 23 3-25 65-87 (272)
464 3t15_A Ribulose bisphosphate c 96.9 0.00052 1.8E-08 51.2 2.9 23 4-26 38-60 (293)
465 3dpu_A RAB family protein; roc 96.9 0.00068 2.3E-08 54.6 3.6 25 2-26 41-65 (535)
466 3gee_A MNME, tRNA modification 96.9 0.00049 1.7E-08 55.0 2.7 23 3-25 234-256 (476)
467 2x2e_A Dynamin-1; nitration, h 96.9 0.00043 1.5E-08 53.0 2.3 24 3-26 32-55 (353)
468 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.00066 2.3E-08 51.3 3.1 24 3-26 46-69 (322)
469 2v1u_A Cell division control p 96.8 0.00053 1.8E-08 52.0 2.6 24 4-27 46-69 (387)
470 4dkx_A RAS-related protein RAB 96.8 0.00082 2.8E-08 48.1 3.4 22 2-23 13-34 (216)
471 3ld9_A DTMP kinase, thymidylat 96.8 0.00089 3E-08 48.3 3.5 26 3-28 22-47 (223)
472 3pvs_A Replication-associated 96.8 0.00051 1.7E-08 54.4 2.4 25 4-28 52-76 (447)
473 3syl_A Protein CBBX; photosynt 96.8 0.00065 2.2E-08 50.4 2.9 23 4-26 69-91 (309)
474 3tmk_A Thymidylate kinase; pho 96.8 0.00066 2.3E-08 48.7 2.8 27 2-28 5-31 (216)
475 3c5h_A Glucocorticoid receptor 96.8 0.00079 2.7E-08 49.1 3.3 22 3-24 20-50 (255)
476 1ofh_A ATP-dependent HSL prote 96.8 0.00071 2.4E-08 49.9 3.1 23 4-26 52-74 (310)
477 2j69_A Bacterial dynamin-like 96.8 0.00078 2.7E-08 56.2 3.5 25 2-26 69-93 (695)
478 3o47_A ADP-ribosylation factor 96.8 0.00062 2.1E-08 51.7 2.7 23 3-25 166-188 (329)
479 3sjy_A Translation initiation 96.8 0.00076 2.6E-08 52.5 3.2 24 3-26 9-32 (403)
480 3eph_A TRNA isopentenyltransfe 96.8 0.00075 2.6E-08 52.9 3.1 24 3-26 3-26 (409)
481 1sky_E F1-ATPase, F1-ATP synth 96.8 0.00039 1.3E-08 55.5 1.5 33 3-35 152-184 (473)
482 3eie_A Vacuolar protein sortin 96.8 0.00078 2.7E-08 50.7 3.1 24 3-26 52-75 (322)
483 3hws_A ATP-dependent CLP prote 96.8 0.00077 2.6E-08 51.5 3.1 24 3-26 52-75 (363)
484 3uk6_A RUVB-like 2; hexameric 96.8 0.00074 2.5E-08 51.3 2.9 34 3-36 71-104 (368)
485 3d8b_A Fidgetin-like protein 1 96.7 0.00088 3E-08 51.3 3.2 24 3-26 118-141 (357)
486 1v5w_A DMC1, meiotic recombina 96.7 0.00098 3.4E-08 50.9 3.4 23 3-25 123-145 (343)
487 2bjv_A PSP operon transcriptio 96.7 0.0014 4.8E-08 47.7 4.0 25 4-28 31-55 (265)
488 2hjg_A GTP-binding protein ENG 96.7 0.001 3.6E-08 52.2 3.5 24 3-26 176-199 (436)
489 4b4t_K 26S protease regulatory 96.7 0.00087 3E-08 52.9 2.9 24 3-26 207-230 (428)
490 1lnz_A SPO0B-associated GTP-bi 96.7 0.00065 2.2E-08 52.0 2.1 22 4-25 160-181 (342)
491 2qp9_X Vacuolar protein sortin 96.7 0.00097 3.3E-08 51.1 3.0 24 3-26 85-108 (355)
492 1bif_A 6-phosphofructo-2-kinas 96.7 0.0012 4.1E-08 52.4 3.6 24 3-26 40-63 (469)
493 1g41_A Heat shock protein HSLU 96.7 0.00079 2.7E-08 53.4 2.5 26 3-28 51-76 (444)
494 1ypw_A Transitional endoplasmi 96.6 0.0004 1.4E-08 58.8 0.8 33 3-37 512-544 (806)
495 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0011 3.9E-08 51.1 3.3 21 3-23 34-54 (362)
496 3pfi_A Holliday junction ATP-d 96.6 0.001 3.6E-08 50.0 3.0 23 4-26 57-79 (338)
497 3co5_A Putative two-component 96.6 0.00069 2.4E-08 45.1 1.8 24 4-27 29-52 (143)
498 2qgz_A Helicase loader, putati 96.6 0.0011 3.9E-08 49.8 3.2 25 3-27 153-177 (308)
499 2qpt_A EH domain-containing pr 96.6 0.00091 3.1E-08 54.3 2.7 24 3-26 66-89 (550)
500 1yrb_A ATP(GTP)binding protein 96.6 0.0014 4.8E-08 47.4 3.4 26 2-27 14-39 (262)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-36 Score=233.24 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=104.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|+.+. .......+..|+.||||||++.+++..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~-~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT-TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS-SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999997432 1122223345678999999998764322
Q ss_pred --CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+++.++|+.+++. +.++ +||||||||+|||||+.+|++||+| |||+.||...+..++
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD---EPTs~LD~~~~~~i~ 203 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---QATSALDPATTRSIL 203 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCHHHHHHHH
Confidence 11 23456788899998863 4555 7999999999999999999999999 999999998887654
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.1e-35 Score=217.56 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=100.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHH---H-HHhhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACR---K-LTKELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~-~~~~ig~V~Q~~~l~~~~~------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ ...+.. . .++.++||||++.+++..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT----NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEc----ccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 467899999999999999999999999999999999743 333332 2 2456999999988764211
Q ss_pred ---------CC-hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 ---------LD-IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ---------~~-~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
.. .+..+.+.++++.+++. +.++ +||||||||+|||||+++|++||+| ||++.||...++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD---EPts~LD~~~~~~ 183 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD---QPTWALDSKTGEK 183 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHH
Confidence 11 23345677788888763 3444 7999999999999999999999999 9999999988875
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
++
T Consensus 184 i~ 185 (235)
T 3tif_A 184 IM 185 (235)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-35 Score=229.42 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=103.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.++|+||||||||||||+|+|+++|++|+|.++|+.+.. ........++.+|||||++.+|+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~--~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS--KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEES--SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcc--cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975421 00111224567999999998875432
Q ss_pred ---CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ---LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ---~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
...+..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+.
T Consensus 108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD---EPts~LD~~~r~~l~ 178 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD---EPFSALDEQLRRQIR 178 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 1234456788999998863 5555 7999999999999999999999999 999999998877543
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.3e-35 Score=221.02 Aligned_cols=130 Identities=14% Similarity=0.022 Sum_probs=102.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc--cccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS--LVNF----------- 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~--l~~~----------- 68 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+. ........+++.+|||||++. ++..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~--~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~ 111 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID--YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV 111 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC--cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHH
Confidence 4578999999999999999999999999999999997431 122334567788999999873 3310
Q ss_pred -ccCC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 69 -STLD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 69 -~~~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.... .+..+++.++++.+++. ++++ +||||||||+|||||+.+|++||+| ||++.||...+..++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD---EPts~LD~~~~~~i~ 183 (275)
T 3gfo_A 112 NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD---EPTAGLDPMGVSEIM 183 (275)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHHH
Confidence 0111 23346788889988763 4444 7999999999999999999999999 999999998877543
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-34 Score=216.62 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=105.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
++.++|+||||||||||+|+|+|+++|++|+|.++|. ++...+.+.+++.++|++|++.+++..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ----NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTE----ETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----ECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 4678999999999999999999999999999999997 4555566677788999999987642111
Q ss_pred -CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhh------cCCcccccCCccccchhhhhhhhhcc
Q 032336 71 -LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVR------NVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 -~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~------~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
...+..+.++++++.+++. ++++ +||||||||+|||||++ +|++||+| ||++.||...+..++
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD---EPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD---EPTSALDLYHQQHTL 187 (266)
T ss_dssp SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC---CCCSSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---CccccCCHHHHHHHH
Confidence 1234456788899998863 3443 79999999999999999 99999999 999999998877543
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.6e-35 Score=227.94 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=102.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
++.++|+||||||||||||+|+|+++|++|+|.++|+.+ ...+. .++.||||||++.+|+..++
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~----~~~~~--~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~ 102 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDTPP--AERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTCCG--GGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC----CCCCH--HHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999743 22222 23579999999988754321
Q ss_pred ---C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD---EPts~LD~~~~~~l 172 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLDAALRVQM 172 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCCHHHHHHH
Confidence 1 23346788889988763 5555 7999999999999999999999999 99999999877654
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.8e-34 Score=211.18 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=100.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH---HHHH-hhcchhccccccccccc-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC---RKLT-KELCDVIEDYSLVNFST------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~~~-~~ig~V~Q~~~l~~~~~------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ ...+. ..++ +.++||||++.+++..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV----DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC----CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 357899999999999999999999999999999999733 22222 2333 67999999987664221
Q ss_pred ------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. .+..+.+.++++.+++. +.++ +||||||||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~~~ 180 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD---EPTGNLDSANTKRVM 180 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 11 12345678888888764 3444 7999999999999999999999999 999999998877543
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-34 Score=214.93 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=102.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+. ........+++.++||||++.+++..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~--~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~ 127 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK 127 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS--STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC--CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999997431 112334556778999999987653211
Q ss_pred ---CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 ---LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 ---~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. ++++ +||||||||+|||||+.+|+++|+| ||++.||...++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD---EPts~LD~~~~~~~~ 199 (263)
T 2olj_A 128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD---EPTSALDPEMVGEVL 199 (263)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe---CCcccCCHHHHHHHH
Confidence 111 2245678888888763 4444 7999999999999999999999999 999999998887543
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-34 Score=214.01 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=101.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehh---------hhccccHHHHHhhcchhccccccccccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQ---------AVHNSACRKLTKELCDVIEDYSLVNFST-- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~---------~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+.. .........+++.++||||++.+++..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 111 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 111 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHH
Confidence 45789999999999999999999999999999999974310 0111112345678999999987653211
Q ss_pred ------------CCh-hhHHHHHHHHHHhhh----hCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhh
Q 032336 71 ------------LDI-QDKESVAKLVKLIDK----SNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEV 131 (143)
Q Consensus 71 ------------~~~-~~~~~~~~~l~~l~~----~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~ 131 (143)
... +..+.+.++++.+++ .+.++ +||||||||+|||||+.+|++||+| ||++.||...
T Consensus 112 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~ 188 (262)
T 1b0u_A 112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD---EPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTSCHHH
T ss_pred HHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHH
Confidence 111 224567888888875 45555 7999999999999999999999999 9999999988
Q ss_pred hhhc
Q 032336 132 QEKY 135 (143)
Q Consensus 132 ~~~~ 135 (143)
++.+
T Consensus 189 ~~~~ 192 (262)
T 1b0u_A 189 VGEV 192 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-34 Score=209.71 Aligned_cols=128 Identities=12% Similarity=0.052 Sum_probs=100.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST---------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~---------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|.. +...+...+ ++.++||||++.+++..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD----ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE----CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE----CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 45789999999999999999999999999999999973 333333333 455999999987653211
Q ss_pred --C-ChhhHHHHHHHHHHhh-hh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --L-DIQDKESVAKLVKLID-KS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~-~~~~~~~~~~~l~~l~-~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. ..+..+.++++++.++ +. ++++ +||||||||+|||||+.+|+++|+| ||++.+|...++.+.
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPSLGLAPILVSEVF 179 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCCHHHHHHHH
Confidence 1 1223456778888884 63 3333 7999999999999999999999999 999999998877543
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.4e-34 Score=222.52 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=101.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|..+ ...+. .++.++||||++.+|++.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV----TELPP--KDRNVGLVFQNWALYPHMTVYKNIAFPLEL 102 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGTTEEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC----CcCCH--hHCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 357899999999999999999999999999999999743 22222 24679999999988754321
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..++++++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l 172 (362)
T 2it1_A 103 RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD---EPLSNLDALLRLEV 172 (362)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---SGGGGSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence 11 2245678889988874 4554 7999999999999999999999999 99999999887754
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.7e-34 Score=222.54 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=101.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|..+. ..+ ..++.++||||++.+|+..++
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~----~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~ 114 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT----DLP--PQKRNVGLVFQNYALFQHMTVYDNVSFGLRE 114 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT----TCC--GGGSSEEEECGGGCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECC----cCC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999997432 222 134679999999888754321
Q ss_pred ---Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 ---DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 ---~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l 184 (355)
T 1z47_A 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD---EPFAAIDTQIRREL 184 (355)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTCCSSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 11 2345788889988763 5555 7999999999999999999999999 99999999887754
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-34 Score=212.22 Aligned_cols=127 Identities=11% Similarity=-0.014 Sum_probs=101.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ .. ....+++.++||||++.+++..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~----~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 115 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV----VE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF 115 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET----TT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----Cc-cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH
Confidence 457899999999999999999999999999999999733 22 23456778999999987653211
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
... +..+.+.++++.+++. ++.+ +||||||||+|||||+.+|+++|+| ||++.+|...++.+.
T Consensus 116 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~ 186 (256)
T 1vpl_A 116 YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSGLDVLNAREVR 186 (256)
T ss_dssp HCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccccCHHHHHHHH
Confidence 111 1234677888888763 4444 7999999999999999999999999 999999998877543
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-33 Score=210.46 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=100.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccH-HHHHhhcchhcccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSAC-RKLTKELCDVIEDYSLVNFS----------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~ig~V~Q~~~l~~~~----------- 69 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ ...+. ...++.++||||++.+++..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 108 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI----TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI 108 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHh
Confidence 457899999999999999999999999999999999733 32222 33466799999998765311
Q ss_pred c---------------CC-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 70 T---------------LD-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 70 ~---------------~~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
. .. .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD---EPts~LD 185 (257)
T 1g6h_A 109 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD---EPIAGVA 185 (257)
T ss_dssp STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTCC
T ss_pred hhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCC
Confidence 0 11 12345678889988763 4444 7999999999999999999999999 9999999
Q ss_pred hhhhhhc
Q 032336 129 AEVQEKY 135 (143)
Q Consensus 129 ~~~~~~~ 135 (143)
...++.+
T Consensus 186 ~~~~~~l 192 (257)
T 1g6h_A 186 PGLAHDI 192 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-34 Score=222.85 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=100.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|..+ ...+. .++.+|||||++.+|++.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV----NDIPP--KYREVGMVFQNYALYPHMTVFENIAFPLRA 102 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC----CCCCh--hhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999743 22222 24679999999888753221
Q ss_pred -C---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -D---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. .+..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l 172 (359)
T 2yyz_A 103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD---EPLSNLDANLRMIM 172 (359)
T ss_dssp SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHH
Confidence 1 11235688889998763 4555 7999999999999999999999999 99999999887754
No 16
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-34 Score=213.92 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=100.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhc--cccHHHHHhhcchhcccccccccc--c-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVH--NSACRKLTKELCDVIEDYSLVNFS--T------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~~~ig~V~Q~~~l~~~~--~------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|. ++. ..+...+++.++||||++.++... +
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~ 122 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK----MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB----CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE----EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence 4578999999999999999999999999999999996 333 334456778899999986532100 0
Q ss_pred -----------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 -----------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 -----------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
...+..+.+.++++.+++. ++++ +||||||||+|||||+.+|++||+| ||++.||...++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLD---EPts~LD~~~~~~ 199 (279)
T 2ihy_A 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD---EPAAGLDFIARES 199 (279)
T ss_dssp TC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---STTTTCCHHHHHH
T ss_pred hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCccccCHHHHHH
Confidence 1122345678888888763 4444 7999999999999999999999999 9999999988875
Q ss_pred cc
Q 032336 135 YI 136 (143)
Q Consensus 135 ~~ 136 (143)
++
T Consensus 200 l~ 201 (279)
T 2ihy_A 200 LL 201 (279)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.5e-34 Score=222.55 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=96.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|+.+ ...+. .++.++||||++.+|++.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLPP--KDRNISMVFQSYAVWPHMTVYENIAFPLKI 110 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSCG--GGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CCCCh--hhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999743 22222 2467999999988775322
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l 180 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSNLDAKLRVAM 180 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCCHHHHHHH
Confidence 111 2245688889988763 4554 7999999999999999999999999 99999999887754
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.4e-34 Score=222.22 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=101.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc--ccHHHHHhhcchhcccccccccccC--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN--SACRKLTKELCDVIEDYSLVNFSTL-------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~~~~~~~ig~V~Q~~~l~~~~~~-------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|..+...... .+. .++.+|||||++.+|++.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999744210000 111 24679999999988754321
Q ss_pred -----Ch-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -----DI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -----~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. +..++++++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD~~~r~~l 178 (372)
T 1g29_1 107 KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---EPLSNLDAKLRVRM 178 (372)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHHH
Confidence 11 2245678889988763 5555 7999999999999999999999999 99999999887754
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9e-34 Score=210.26 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=100.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|. ++...+...+++.++||||++.+++.. .. ...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH----DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE----EhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCC
Confidence 4578999999999999999999999999999999997 344445556778899999998776310 01 111
Q ss_pred hHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++.+++. .. ..+||||||||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD---EPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD---EATSALDYESEHVIM 185 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC---CCCSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 234566667666542 11 247999999999999999999999999 999999998877543
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-34 Score=223.43 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=101.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|+.+... ........++.++||||++.+|+..+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN-GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET-TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccc-ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999744210 00001123567999999988875322
Q ss_pred --CCh-hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 --LDI-QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 --~~~-~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +..+++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~r~~l 179 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---EPFSNLDARMRDSA 179 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCGGGHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHH
Confidence 111 2345788899998763 4555 7999999999999999999999999 99999999887754
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8e-34 Score=219.51 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=101.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|+.+ .... ..++.++||||++.+|++.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i----~~~~--~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV----TDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--HHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC----CCCc--hhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999999999999999743 2222 2356799999999887643211
Q ss_pred ---hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 ---IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ---~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
... +++.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 100 ~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~~~~l 166 (348)
T 3d31_A 100 KKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPRTQENA 166 (348)
T ss_dssp HCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHHHHHHH
T ss_pred cCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence 112 5678889988763 4554 7999999999999999999999999 99999999887754
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-34 Score=210.92 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=99.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc----------C-
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------L- 71 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------~- 71 (143)
..++|+||||||||||+|+|+|+++|++|+|.++|..+. ... ..++.++||||++.+++..+ .
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~----~~~--~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT----PLP--PERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT----TSC--TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC----cCc--hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 368999999999999999999999999999999997432 111 23467999999987764221 0
Q ss_pred C-hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 D-IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ~-~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. ..+.+.++++++.+++. ++++ +||||||||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD---EPts~LD~~~~~~~~ 166 (240)
T 2onk_A 99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDLKTKGVLM 166 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHHH
Confidence 1 12245677888888763 4444 7999999999999999999999999 999999998877543
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-33 Score=215.30 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=100.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.|+||||++.+|... .+ ...
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~----~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ----DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA 155 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE----ETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE----EcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccC
Confidence 4679999999999999999999999999999999997 556677788899999999999887311 01 111
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++.+++. ...-+||||||||+|||||+.+|++|||| ||++.+|...+..++
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD---EPts~LD~~~~~~i~ 230 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD---EATSALDTSNERAIQ 230 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHHHH
Confidence 123444555544321 11237999999999999999999999999 999999998877543
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.9e-33 Score=207.80 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=101.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc------C---C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST------L---D 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~------~---~ 72 (143)
+..++|+||||||||||+|+|+|+++|+ |+|.++|. ++...+...+++.++||||++.+++..+ . .
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQ----PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTE----EGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCE----ECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 4578999999999999999999999999 99999997 3444455667788999999987653211 0 0
Q ss_pred hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCC-------cccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVD-------WDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~-------~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++++.+++. +..+ +||||||||+|||||+.+|+ ++|+| ||++.+|...++.+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD---EPts~LD~~~~~~l 172 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---EPMNSLDVAQQSAL 172 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---STTTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE---CCcccCCHHHHHHH
Confidence 01145678889988763 3433 79999999999999999999 99999 99999999887754
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.98 E-value=1.5e-33 Score=208.60 Aligned_cols=127 Identities=14% Similarity=0.088 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC---Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL---DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~---~~ 73 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ ...+...+++.++||||++.+|+. ... ..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~ 103 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI----DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD 103 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES----TTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCC
Confidence 467999999999999999999999999999999999743 222223356779999999877631 001 11
Q ss_pred hhHHHHHHHHHHhhhh---CC-------------CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 74 QDKESVAKLVKLIDKS---NG-------------YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~---~~-------------~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.+.++++.+++. +. ..+||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD---EPts~LD~~~~~~i 178 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD---EATASLDSESESMV 178 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCSCSSCSSSCCHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence 2234567777777652 11 247999999999999999999999999 99999998877644
No 26
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.98 E-value=4.7e-33 Score=217.95 Aligned_cols=126 Identities=9% Similarity=0.037 Sum_probs=102.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----c-CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----T-LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~-~~~~~ 75 (143)
++.++|+||||||||||||+|+|+++ ++|+|.++|+ ++...+...+++.++||||++.+|+.. . .....
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~----~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~ 121 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV----SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS 121 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC----BTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSC
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE----ECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccC
Confidence 46789999999999999999999998 8999999997 555566677788999999999887421 0 12223
Q ss_pred HHHHHHHHHHhhh---hCCCc-------------CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKLIDK---SNGYI-------------FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~l~~---~~~~~-------------lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+.+.++++.+++ .++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLD---EPts~LD~~~~~~l 194 (390)
T 3gd7_A 122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD---EPSAHLDPVTYQII 194 (390)
T ss_dssp HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEE---SHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHH
Confidence 4567788888765 23332 8999999999999999999999999 99999998877643
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.98 E-value=4.5e-33 Score=202.62 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=98.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~---------- 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|.. +. ..++.++||||++.+++..++
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~----~~-----~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 105 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP----IT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASL 105 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE----GG-----GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE----hh-----hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999999999999999963 22 145779999999876532110
Q ss_pred -C-hhhHHHHHHHHHHhhhhC--CCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 72 -D-IQDKESVAKLVKLIDKSN--GYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 72 -~-~~~~~~~~~~l~~l~~~~--~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
. ..+.+.+.++++.+++.. ..+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD---EPts~LD~~~~~~l 172 (214)
T 1sgw_A 106 YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSKHKV 172 (214)
T ss_dssp TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTHHHH
T ss_pred cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHH
Confidence 0 112456788888887643 333 7999999999999999999999999 99999999887754
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.98 E-value=1e-32 Score=207.11 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TL 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~ 71 (143)
+..++|+||||||||||||+|+|+++|++|+|.++|. ++...+...+++.++||||++.+|+.. ..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~----~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 120 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE----PLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT 120 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE----EGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE----EcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccC
Confidence 3578999999999999999999999999999999997 344444556778899999998776310 01
Q ss_pred Ch-hhH------HHHHHHHHHh--hhh---CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 DI-QDK------ESVAKLVKLI--DKS---NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ~~-~~~------~~~~~~l~~l--~~~---~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.. +.. ..+.++++.+ ++. +.+ .+||||+|||+|||||+.+|++||+| ||++.||...++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i~ 196 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD---NATSALDAGNQLRVQ 196 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHHH
Confidence 11 110 1123445555 332 222 37999999999999999999999999 999999998887543
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.98 E-value=1.1e-32 Score=206.35 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=98.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-cccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFS----------- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~----------- 69 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|..+ ... .+++.++||||++ .++...
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~----~~~---~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK----KGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----CHH---HHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC----chH---HhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 357899999999999999999999999999999999633 211 4667899999985 222110
Q ss_pred c-CC-hhhHHHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 70 T-LD-IQDKESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 70 ~-~~-~~~~~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
. .. .+..+.+.++++.+++. +..+ +||||||||+|||||+.+|+++++| ||++.+|...+..+.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~ 178 (266)
T 2yz2_A 106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD---EPLVGLDREGKTDLL 178 (266)
T ss_dssp TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CccccCCHHHHHHHH
Confidence 0 11 12345678889988764 3444 7999999999999999999999999 999999998877543
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=2.8e-32 Score=202.49 Aligned_cols=127 Identities=16% Similarity=0.074 Sum_probs=94.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-HhhcchhcccccccccccC-------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFSTL------- 71 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~~------- 71 (143)
+..++|+||||||||||+|+|+|+ ++|++|+|.++|.. +...+.... +..++||||++.+++..+.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~----~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN----ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE----CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE----CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 457899999999999999999998 88999999999973 333333333 3458999999876532110
Q ss_pred ---------C-hhhHHHHHHHHHHhhh-h---CCC--c-CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 72 ---------D-IQDKESVAKLVKLIDK-S---NGY--I-FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 72 ---------~-~~~~~~~~~~l~~l~~-~---~~~--~-lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. .+..+.+.++++.+++ . +++ . +||||||||+|||||+.+|+++|+| ||++.+|...++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD---EPts~LD~~~~~~ 181 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD---ETDSGLDIDALKV 181 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE---CGGGTTCHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe---CCCcCCCHHHHHH
Confidence 1 1223457778888876 2 333 3 8999999999999999999999999 9999999988775
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 182 l 182 (250)
T 2d2e_A 182 V 182 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=2.9e-32 Score=203.53 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=96.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+|+|+|+++| +|+|.++|. ++...+...+++.++||||++.+|+.. .+ ...
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~----~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 120 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGK----NVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTE----EGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCE----EhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCC
Confidence 357899999999999999999999987 899999997 344445566778899999998876310 01 011
Q ss_pred hHHHHHHHHHHhhhh--------------CC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKS--------------NG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~--------------~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.++++.+++. .. ..+||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i 194 (260)
T 2ghi_A 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD---EATSSLDSKTEYLF 194 (260)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE---CCCCTTCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence 223455556554421 11 237999999999999999999999999 99999999887754
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=6.6e-32 Score=202.26 Aligned_cols=127 Identities=12% Similarity=0.059 Sum_probs=98.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC--cccCCceEEEcceeehhhhccccHHHH-Hhhcchhccccccccccc--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF--LSLIGSNICCSNVFYLQAVHNSACRKL-TKELCDVIEDYSLVNFST-------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~ig~V~Q~~~l~~~~~-------- 70 (143)
+..++|+||||||||||+|+|+|+ ++|++|+|.++|.. +...+...+ ++.++||||++.+++..+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~----i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD----LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE----GGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE----CCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence 457899999999999999999999 57899999999973 333333333 345999999987653110
Q ss_pred ------------CCh-hhHHHHHHHHHHhhhh----CCC---cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 71 ------------LDI-QDKESVAKLVKLIDKS----NGY---IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 71 ------------~~~-~~~~~~~~~l~~l~~~----~~~---~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
... +..+.+.++++.+++. +.+ .+||||||||+|||||+.+|++||+| ||++.+|..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD---EPts~LD~~ 198 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD---ESDSGLDID 198 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTCCHH
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe---CCCCCCCHH
Confidence 011 1234677888888763 333 28999999999999999999999999 999999998
Q ss_pred hhhhc
Q 032336 131 VQEKY 135 (143)
Q Consensus 131 ~~~~~ 135 (143)
.++.+
T Consensus 199 ~~~~l 203 (267)
T 2zu0_C 199 ALKVV 203 (267)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88744
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.3e-31 Score=200.35 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=96.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccccccC----------
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVNFSTL---------- 71 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~~~~~---------- 71 (143)
..++|+||||||||||+|+|+|++ |++|+|.++|..+ ... .. ++.++ ||||++.+ . .+.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~----~~~--~~-~~~i~~~v~Q~~~l-~-~tv~enl~~~~~~ 100 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV----RKI--RN-YIRYSTNLPEAYEI-G-VTVNDIVYLYEEL 100 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG----GGC--SC-CTTEEECCGGGSCT-T-SBHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC----cch--HH-hhheEEEeCCCCcc-C-CcHHHHHHHhhhh
Confidence 568999999999999999999999 9999999999743 222 22 56799 99999865 2 111
Q ss_pred ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 72 DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 72 ~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.....+.+.++++.+++. ++.+ +||||||||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 101 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 101 KGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD---EPFENVDAARRHVIS 168 (263)
T ss_dssp TCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCccccCHHHHHHHH
Confidence 012245677888888764 3333 7999999999999999999999999 999999998887543
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.8e-31 Score=198.56 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=92.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
+..++|+||||||||||+|+|+|+++|++|+|.+ ++.++||||++.+++..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 93 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------------YQSIGFVPQFFSSPFAYSVLDIVLMGRST 93 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------------CSCEEEECSCCCCSSCCBHHHHHHGGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------------eccEEEEcCCCccCCCCCHHHHHHHhhhh
Confidence 3578999999999999999999999999999961 245899999887652110
Q ss_pred -------CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 -------LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 -------~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...++.+.++++++.+++. ++.+ +||||||||+|||||+.+|+++++| ||++.+|...++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~~~~~l 167 (253)
T 2nq2_C 94 HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD---EPTSALDLANQDIV 167 (253)
T ss_dssp GSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES---SSSTTSCHHHHHHH
T ss_pred hcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 0123345678889988763 4444 7999999999999999999999999 99999999887754
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=5.7e-31 Score=215.24 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=102.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC---Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL---DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~---~~ 73 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||||++.+|+.. .. ..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 444 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH----DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE 444 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE----EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCC
Confidence 4679999999999999999999999999999999997 444556677888999999999877320 01 11
Q ss_pred hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++.+++. ....+|||||||++||||++.+|+++++| ||++.+|...++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD---Epts~LD~~~~~~i~ 520 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD---EATSALDTESERAIQ 520 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHHH
Confidence 2345567777766531 11347999999999999999999999999 999999998877543
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=4.8e-31 Score=215.69 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=102.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC---Ch
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL---DI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~---~~ 73 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||||++.+|+.. .. ..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 444 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH----DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE 444 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE----ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE----EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCC
Confidence 4679999999999999999999999999999999997 455566677888999999999877310 01 11
Q ss_pred hhHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 QDKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++.+++. ....+|||||||++||||++.+|+++++| ||++.+|...++++.
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD---Epts~LD~~~~~~i~ 520 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD---EATSALDTESERAIQ 520 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE---TTTSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---CccccCCHHHHHHHH
Confidence 2344566677665431 12347999999999999999999999999 999999998877543
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=5.9e-31 Score=215.60 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------ccCC-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------STLD- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~~~~- 72 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|+. ....
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~----~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH----DIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 445 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE----ETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE----EhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCc
Confidence 4679999999999999999999999999999999997 45556667788899999999987631 0111
Q ss_pred -hhhHHHHHHHHHHhhhh----------C------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 -IQDKESVAKLVKLIDKS----------N------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 -~~~~~~~~~~l~~l~~~----------~------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.+.++++.+++. + ..-+||||||||+||||++.+|+++++| ||++.+|...++.+
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD---Epts~LD~~~~~~i 522 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD---EATSALDAENEYLV 522 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE---CCCSSCCHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CcccCCCHHHHHHH
Confidence 12345677777776531 1 1337999999999999999999999999 99999999887754
Q ss_pred c
Q 032336 136 I 136 (143)
Q Consensus 136 ~ 136 (143)
.
T Consensus 523 ~ 523 (595)
T 2yl4_A 523 Q 523 (595)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=8.8e-31 Score=214.01 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------cCChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------TLDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------~~~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||+|++.+|+.. .....
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 442 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH----NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 442 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE----EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE----EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 556667778899999999999887321 01112
Q ss_pred hHHHHHHHHHHhhhh----------------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDKS----------------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~----------------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.++++.+++. ....+||||||||+||||++.+|+++++| ||++.+|...+..+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD---Epts~LD~~~~~~i 516 (578)
T 4a82_A 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD---EATSALDLESESII 516 (578)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHHHHHH
Confidence 234455555554321 11237999999999999999999999999 99999999876644
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.7e-30 Score=212.71 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=100.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
++.++|+||||||||||+++|+|+++|++|+|.++|. ++...+...++++++||||++.+|.. ... ...
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL----DVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA 444 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS----BGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE----EcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCC
Confidence 4679999999999999999999999999999999997 56667778889999999999988731 011 111
Q ss_pred hHHHHHHHHHHhhh-----------h-----CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 75 DKESVAKLVKLIDK-----------S-----NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-----------~-----~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.+.++++..++ . ...-+|||||||++||||++.+|+++++| ||++.+|..+++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlD---Epts~LD~~~~~~i~ 519 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD---DCTSSVDPITEKRIL 519 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEE---SCCTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHHHH
Confidence 22334444443321 1 12337999999999999999999999999 999999998877554
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=1.3e-30 Score=191.30 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=87.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccC------C-hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTL------D-IQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~------~-~~ 74 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.+++. ++ . ..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------------~i~~v~q~~~~~~~-tv~enl~~~~~~ 95 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RISFCSQFSWIMPG-TIKENIIFGVSY 95 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------------CEEEECSSCCCCSB-CHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------------EEEEEecCCcccCC-CHHHHhhccCCc
Confidence 357899999999999999999999999999999887 28999999877642 11 0 00
Q ss_pred hHHHHHHHHHHhhhh---C-------------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhccC
Q 032336 75 DKESVAKLVKLIDKS---N-------------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYIK 137 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~---~-------------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~~ 137 (143)
......++++.+++. . ...+||||||||+|||||+.+|+++++| ||++.+|...++.+++
T Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD---EPts~LD~~~~~~i~~ 171 (229)
T 2pze_A 96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLTEKEIFE 171 (229)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE---STTTTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CcccCCCHHHHHHHHH
Confidence 111223333333210 0 1347999999999999999999999999 9999999998885543
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=191.55 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=85.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c-cCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S-TLD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~-~~~ 72 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++|. ++||||++.++.. . ...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~-----------------i~~v~Q~~~~~~~tv~enl~~~~~~~ 93 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-----------------VAYVPQQAWIQNDSLRENILFGCQLE 93 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC-----------------EEEECSSCCCCSEEHHHHHHTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-----------------EEEEcCCCcCCCcCHHHHhhCccccC
Confidence 3578999999999999999999999999999999872 8999999765311 0 011
Q ss_pred hhhHHHHHHH---HHHhhh--------hCC--CcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKL---VKLIDK--------SNG--YIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~---l~~l~~--------~~~--~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.+..+.+.++ ++.++. .+. ..+||||||||+|||||+.+|+++++| ||++.+|...+..+
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i 166 (237)
T 2cbz_A 94 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVDAHVGKHI 166 (237)
T ss_dssp TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHH
Confidence 1212222222 122221 122 237999999999999999999999999 99999999887744
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.9e-30 Score=212.81 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=99.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----cC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----TL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----~~--~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+++.++||||++.+|... .. ...
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~----~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI----DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA 456 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE----EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE----EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 556667778899999999999887311 00 111
Q ss_pred hHHHHHHHHHHhhh-------hC---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 75 DKESVAKLVKLIDK-------SN---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+.+.+.++++.+++ .+ ..-+||||||||+||||++.+|+++++| ||++.+|...+..+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD---Epts~LD~~~~~~i 530 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD---EATSNVDTKTEKSI 530 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC---CCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHH
Confidence 12234445444322 11 1247999999999999999999999999 99999999887654
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=6.5e-30 Score=193.47 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=87.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh------hh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI------QD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~------~~ 75 (143)
+..++|+||||||||||+|+|+|+++|++|+|.++| .++||||++.+++. ++.+ ..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------------~i~~v~Q~~~l~~~-tv~enl~~~~~~ 125 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RISFCSQNSWIMPG-TIKENIIGVSYD 125 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------------CEEEECSSCCCCSS-BHHHHHHTTCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------------EEEEEeCCCccCcc-cHHHHhhCcccc
Confidence 357899999999999999999999999999999876 28999999877642 1100 01
Q ss_pred HHHHHHHHHHhhhh-------C---------CCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 76 KESVAKLVKLIDKS-------N---------GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 76 ~~~~~~~l~~l~~~-------~---------~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
...+.++++.+++. . ...+||||||||+|||||+.+|+++++| ||++.+|...++.+.
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~~~~~i~ 199 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVLTEKEIF 199 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEE---CCcccCCHHHHHHHH
Confidence 11223333333221 0 1347999999999999999999999999 999999999888554
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=2.7e-29 Score=220.21 Aligned_cols=127 Identities=15% Similarity=0.178 Sum_probs=105.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc-----c---cc-CC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN-----F---ST-LD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~-----~---~~-~~ 72 (143)
+.++||+||||||||||+++|.|+++|++|+|.++|. ++...+...+|+++++|||++.+|. + .. ..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~----di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS----EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE----ETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE----EhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence 5689999999999999999999999999999999997 6778889999999999999999883 1 11 11
Q ss_pred hhhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++++..++ . .+.-+|||||||++||||+..+|++|+|| |||+.+|.++...+
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLD---EaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLD---EATSALDTESEKVV 1256 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEE---SCCCSTTSHHHHHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEe---CccccCCHHHHHHH
Confidence 2234567777777653 1 12237999999999999999999999999 99999998876544
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=3.8e-28 Score=213.02 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=102.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----ccC--Chh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----STL--DIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~~~--~~~ 74 (143)
+..++|+||||||||||+++|.|+++|++|+|.++|. ++...+.+.+|++|+||+|++.+|.- ..+ ...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~----~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~ 519 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV----DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGI 519 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc----cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccc
Confidence 4679999999999999999999999999999999997 67778889999999999999998831 111 112
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
+.+.+.++++..++ . .+.-+|||||||++||||+..+|++++|| ||++.+|..+..
T Consensus 520 ~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLD---E~tSaLD~~te~ 591 (1321)
T 4f4c_A 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD---EATSALDAESEG 591 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSCTTTHH
T ss_pred hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEe---cccccCCHHHHH
Confidence 34556666666432 1 22337999999999999999999999999 999999987643
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=4.9e-28 Score=211.83 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=98.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-------cCChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-------TLDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-------~~~~~ 74 (143)
+..++|+||||||||||+++|+|+++|++|+|.++|. ++...+...+|+.++||+|++.+|... .....
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~----~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~ 491 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ----DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE----EGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE----EHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCC
Confidence 4679999999999999999999999999999999997 556677888999999999999887320 00111
Q ss_pred hHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 75 DKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 75 ~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
..+.+.++++..+. . ...-+||||||||+||||++.+|++|+|| ||++.+|..+...
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLD---Epts~LD~~~~~~ 564 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD---EATSALDTESEAV 564 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEE---STTCSSCHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCHHHHHH
Confidence 12334444443221 1 12237999999999999999999999999 9999999887653
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=6.6e-28 Score=211.05 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=100.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc-----c---cC-C
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-----S---TL-D 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-----~---~~-~ 72 (143)
++.+||+||||||||||+++|.|+++|++|+|.++|. ++...+.+.+|+.++||||++.+|.. . .. .
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK----EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS----CTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE----EcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCC
Confidence 4689999999999999999999999999999999997 56667778889999999999987631 0 00 1
Q ss_pred hhhHHHHHHHHHHhhh-------h---------CCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDK-------S---------NGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~-------~---------~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
....+.+.++++..++ . ....+||||||||+|||||+.+|++|++| |||+.+|....+.+
T Consensus 1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLD---EpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD---EATSALDTESEKVV 1210 (1284)
T ss_dssp CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEE---SCSSSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHHHHHH
Confidence 1123344555554432 1 12347999999999999999999999999 99999999876643
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2e-27 Score=192.71 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=87.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc-----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS-----------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~-----------~ 70 (143)
++.++|+||||||||||+|+|+|+++|++|+|.+++. .++|++|+....... .
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------~i~~~~q~~~~~~~~tv~~~l~~~~~~ 357 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ----------------ILSYKPQRIFPNYDGTVQQYLENASKD 357 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC----------------CEEEECSSCCCCCSSBHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe----------------eeEeechhcccccCCCHHHHHHHhhhh
Confidence 4578999999999999999999999999999987653 256777764321100 0
Q ss_pred CChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 LDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
........++++++.+++. ++++ +||||||||+|||||+++|++||+| |||+.||...+..+
T Consensus 358 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i 424 (538)
T 3ozx_A 358 ALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD---QPSSYLDVEERYIV 424 (538)
T ss_dssp TTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred ccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHH
Confidence 1011223466777777763 4444 7999999999999999999999999 99999999877643
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=5.1e-27 Score=192.65 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=89.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC---------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD--------- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~--------- 72 (143)
++.++|+||||||||||+|+|+|+++|++|+|.+. ..++|+||++.+.+..++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-----------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 444 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-----------------LTVAYKPQYIKAEYEGTVYELLSKIDSS 444 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-----------------CCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-----------------eEEEEEecCccCCCCCcHHHHHHhhhcc
Confidence 45799999999999999999999999999999641 2489999987653221110
Q ss_pred -hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 -IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 -~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.+.+.++++.+++. ++.+ +||||||||+|||||+++|++|||| ||++.||...++.+
T Consensus 445 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD---EPt~~LD~~~~~~l 510 (607)
T 3bk7_A 445 KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAV 510 (607)
T ss_dssp HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCccCCCHHHHHHH
Confidence 01123466778887763 3333 7999999999999999999999999 99999999887644
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=3.2e-27 Score=191.60 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=89.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceE---------EEcceeehhhhccccHHHH--Hhhcchhccccccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI---------CCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFST 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i---------~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~~ 70 (143)
++.++|+||||||||||+|+|+|+++|++|++ .++|. .+........ +..+++++|...+++...
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN----ELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTS----THHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCc----cHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 46789999999999999999999999999995 23442 1111100111 124678888755433211
Q ss_pred C-Ch-------hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 71 L-DI-------QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 71 ~-~~-------~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
. .. +..+.+.++++.+++. ++++ +||||||||+|||||+.+|++|||| |||+.||...++.
T Consensus 123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD---EPTs~LD~~~~~~ 196 (538)
T 1yqt_A 123 KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD---EPSSYLDIRQRLN 196 (538)
T ss_dssp CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHH
T ss_pred hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHH
Confidence 0 10 1113567888888864 3444 7999999999999999999999999 9999999987664
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=4.4e-27 Score=192.99 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceE---------EEcceeehhhhccccHHHH--Hhhcchhcccccccccc-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI---------CCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFS- 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i---------~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~- 69 (143)
+..++|+||||||||||||+|+|+++|++|++ .++|. .+........ +..+++++|...+++..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN----ELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTS----THHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCE----ehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 45789999999999999999999999999996 33443 2211111111 23467778865433211
Q ss_pred --cCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 70 --TLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 70 --~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
++. .+..+.+.++++.+++. ++++ +||||||||+|||||+++|++|||| ||++.||...++.+
T Consensus 193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD---EPTs~LD~~~~~~l 267 (607)
T 3bk7_A 193 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD---EPSSYLDIRQRLKV 267 (607)
T ss_dssp CSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---CTTTTCCHHHHHHH
T ss_pred cccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCcccCCHHHHHHH
Confidence 100 01123567888888763 4444 7999999999999999999999999 99999999876643
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=6.5e-27 Score=189.81 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=88.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCCh--------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDI-------- 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~-------- 73 (143)
++.++|+||||||||||+|+|+|+++|++|+|.+. ..++||||++...+..++..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-----------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~ 374 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-----------------LTVAYKPQYIKADYEGTVYELLSKIDAS 374 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-----------------CCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-----------------ceEEEEecCCcCCCCCcHHHHHHhhhcc
Confidence 46799999999999999999999999999999641 24899999876532211100
Q ss_pred --hhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhcc
Q 032336 74 --QDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 74 --~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.+.++++.+++. ++.+ +||||||||+|||||+.+|++|++| |||+.+|...++.+.
T Consensus 375 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD---EPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 375 KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHH
Confidence 1123455566666553 3443 7999999999999999999999999 999999998877543
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.6e-26 Score=187.49 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=84.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceE-----------EEcceeehhhhccccHHHHHhh------cchhccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI-----------CCSNVFYLQAVHNSACRKLTKE------LCDVIEDYS 64 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i-----------~~~g~~~~~~~~~~~~~~~~~~------ig~V~Q~~~ 64 (143)
+..+||+||||||||||+|+|+|+++|++|+| .+.|. ++........... +.++.+.+.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK----EIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTS----TTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCe----eHHHHHHHHhhcccchhhccchhhhhhh
Confidence 46799999999999999999999999999998 34442 1111100111111 222222222
Q ss_pred ccccccCC-----hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 65 LVNFSTLD-----IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 65 l~~~~~~~-----~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
++. .+.. .+..+.++++++.+++. ++.+ +||||||||+|||||+.+|++|+|| ||++.||...++.
T Consensus 101 ~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD---EPts~LD~~~~~~ 176 (538)
T 3ozx_A 101 FLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD---QPSSYLDVRERMN 176 (538)
T ss_dssp TCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHH
T ss_pred hcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCCHHHHHH
Confidence 111 0000 01123467778887763 4444 7999999999999999999999999 9999999987664
Q ss_pred c
Q 032336 135 Y 135 (143)
Q Consensus 135 ~ 135 (143)
+
T Consensus 177 l 177 (538)
T 3ozx_A 177 M 177 (538)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-26 Score=186.34 Aligned_cols=126 Identities=11% Similarity=0.018 Sum_probs=84.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE-----------EcceeehhhhccccHHHHHhhcch--hccccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC-----------CSNVFYLQAVHNSACRKLTKELCD--VIEDYSLVNF 68 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~~~~~~~~~~ig~--V~Q~~~l~~~ 68 (143)
+..++|+||||||||||||+|+|+++|++|+|. +.|. .+.........+.+.. .+|....++.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS----ELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTS----THHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecCh----hhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 457899999999999999999999999999983 2221 1111111112222221 1222111100
Q ss_pred c-------------cCChhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 69 S-------------TLDIQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 69 ~-------------~~~~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
. .......+.+.++++.+++. ++.+ +||||||||+|||||+.+|++|+|| ||++.||..
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllD---EPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFD---EPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEE---CTTTTCCHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEE---CcccCCCHH
Confidence 0 00112235688889888763 3443 7999999999999999999999999 999999987
Q ss_pred hhhh
Q 032336 131 VQEK 134 (143)
Q Consensus 131 ~~~~ 134 (143)
.+..
T Consensus 256 ~~~~ 259 (608)
T 3j16_B 256 QRLN 259 (608)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-25 Score=183.72 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=85.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----------cCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----------TLD 72 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----------~~~ 72 (143)
+.++|+||||||||||+|+|+|+++|++|+.. . +..++|++|+....... ...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~----------------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P----------------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C----------------SCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c----------------CCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 46899999999999999999999999999731 1 12478888875432100 001
Q ss_pred hhhHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+...+.++++.+++. ++++ +||||||||+|||||+++|++||+| |||+.||...+..+
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i 506 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID---EPSAYLDSEQRIIC 506 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC---CTTTTCCHHHHHHH
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCCCCCHHHHHHH
Confidence 12234567788888763 4444 7999999999999999999999999 99999998776543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=1.7e-24 Score=184.34 Aligned_cols=56 Identities=4% Similarity=-0.064 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhh-----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 77 ESVAKLVKLIDKS-----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 77 ~~~~~~l~~l~~~-----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+.++++++.+++. +..+ +||||||||+|||||+.+|++|+|| |||+.||......+
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLD---EPT~gLD~~s~~~L 940 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD---EPTNYLDRDSLGAL 940 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEE---CGGGTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEE---CCccCCCHHHHHHH
Confidence 4577888888762 2333 7999999999999999999999999 99999999877644
No 57
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=6.1e-26 Score=164.31 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=72.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc--cccccc-----c-CCh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY--SLVNFS-----T-LDI 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~--~l~~~~-----~-~~~ 73 (143)
+..++|+||||||||||+++|+|+ +|++|+|.. ..+ .. .....++.++||||++ .+..+. . ...
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~----~~-~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~ 93 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IIL----TR-PAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDM 93 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEE----EE-CSCCTTCCCCSSCC------CTTTHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEe----cC-CchhhhcceEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999 999999942 111 11 1112456799999986 221110 0 000
Q ss_pred hhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccch
Q 032336 74 QDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 74 ~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
.+.+.+.++++. + .||||||+|||||+.+|+++|+| ||++.
T Consensus 94 ~~~~~~~~~l~~-g--------lGq~qrv~lAraL~~~p~lllLD---EPts~ 134 (208)
T 3b85_A 94 VEPEVIPKLMEA-G--------IVEVAPLAYMRGRTLNDAFVILD---EAQNT 134 (208)
T ss_dssp SCTTHHHHHHHT-T--------SEEEEEGGGGTTCCBCSEEEEEC---SGGGC
T ss_pred ccHHHHHHHHHh-C--------CchHHHHHHHHHHhcCCCEEEEe---CCccc
Confidence 112234444443 3 39999999999999999999999 99998
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=2.9e-23 Score=172.02 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=71.9
Q ss_pred eeeEEEECCCCCcHHHHH---------------------HHHhCCcccCCceE-------EEcceeehhhhccccHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYC---------------------NGMSQFLSLIGSNI-------CCSNVFYLQAVHNSACRKLT 53 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl---------------------~~l~g~~~~~~G~i-------~~~g~~~~~~~~~~~~~~~~ 53 (143)
+..++|+||||||||||+ +++.++.+|+.|.| .+++.. . ....+
T Consensus 44 Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~----~----~~~~~ 115 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT----T----SRNPR 115 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-------------C
T ss_pred CCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch----h----hccch
Confidence 457899999999999998 89999999985554 444421 1 11223
Q ss_pred hhcchhcccccccc-------------------cccC------------Chhh----HH------HHHHHHHHhhhh---
Q 032336 54 KELCDVIEDYSLVN-------------------FSTL------------DIQD----KE------SVAKLVKLIDKS--- 89 (143)
Q Consensus 54 ~~ig~V~Q~~~l~~-------------------~~~~------------~~~~----~~------~~~~~l~~l~~~--- 89 (143)
+.+++|+|.+.++. ..++ .... .. ...++++.+++.
T Consensus 116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 195 (670)
T 3ux8_A 116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT 195 (670)
T ss_dssp CBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCC
T ss_pred hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 45666666543210 0000 0000 00 011235555543
Q ss_pred -CCCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhhhcc
Q 032336 90 -NGYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 90 -~~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~~~~ 136 (143)
++++ +||||||||+|||||+++|+ +||+| ||++.||...++.++
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLD---EPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLI 244 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEE---CTTTTCCGGGHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEE---CCccCCCHHHHHHHH
Confidence 3444 79999999999999999998 99999 999999998877543
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-24 Score=173.24 Aligned_cols=113 Identities=11% Similarity=-0.057 Sum_probs=84.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc-e-EEEcceeehhhhccccHHHHHhhcchhcccccccccc---cCC----
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-N-ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS---TLD---- 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~---~~~---- 72 (143)
+..++|+||||||||||+|+|+|+++|++| + |+++|. .++.++++||+..++++. +..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-------------~~~~i~~vpq~~~l~~~~~~~tv~eni~ 204 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-------------PQQPIFTVPGCISATPISDILDAQLPTW 204 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-------------TTSCSSSCSSCCEEEECCSCCCTTCTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-------------ccCCeeeeccchhhcccccccchhhhhc
Confidence 457899999999999999999999999999 9 998872 245699999997654321 100
Q ss_pred -------hhhHHHHHHHHHHhhhh---CCCcCCchhHHHHHHHHH--HhhcCCc----ccccCCcc-ccchhhhh
Q 032336 73 -------IQDKESVAKLVKLIDKS---NGYIFAGMDASAVEFSKI--AVRNVDW----DYYRYPSF-HLFQSLAE 130 (143)
Q Consensus 73 -------~~~~~~~~~~l~~l~~~---~~~~lSgGe~qrv~ia~a--l~~~p~~----llld~~~~-~~~~~~~~ 130 (143)
....+.+.++++.+++. +...+||||+|||++||| |+.+|++ +|+| | |++.+|..
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD---EpPts~LD~~ 276 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD---TPSISQLDEN 276 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE---CCCGGGSCSS
T ss_pred ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe---CCcccccChh
Confidence 00112233344444442 222379999999999999 9999999 9999 9 99998765
No 60
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=8.2e-23 Score=144.52 Aligned_cols=108 Identities=13% Similarity=0.016 Sum_probs=71.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--ccCChhhHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--STLDIQDKESVAK 81 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~~~~~~~~~~~~ 81 (143)
.++|+||||||||||+++|+|++. |.++|... ........++.++|++|+...... ........
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~----~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~----- 67 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWT----EEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK----- 67 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEE----EEEC------CCEEEEEETTCCEEEEEETTCCCS-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEh----hhhccccccceeEEEeecCcHHHHHHHhhcCCcc-----
Confidence 478999999999999999999985 45556421 111111345679999997621100 00000000
Q ss_pred HHHHhhhhCCCc--CCchhHHHHHHHHH-----HhhcCCcccccCCcc--ccchhhhhhhh
Q 032336 82 LVKLIDKSNGYI--FAGMDASAVEFSKI-----AVRNVDWDYYRYPSF--HLFQSLAEVQE 133 (143)
Q Consensus 82 ~l~~l~~~~~~~--lSgGe~qrv~ia~a-----l~~~p~~llld~~~~--~~~~~~~~~~~ 133 (143)
.....+. +||||+||+++|+| ++.+|+++++| | |++.++...++
T Consensus 68 -----~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilD---Eigp~~~ld~~~~~ 120 (178)
T 1ye8_A 68 -----KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID---EIGKMELFSKKFRD 120 (178)
T ss_dssp -----SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC---CCSTTGGGCHHHHH
T ss_pred -----ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEe---CCCCcccCCHHHHH
Confidence 1222333 69999999999996 99999999999 9 99999887766
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.84 E-value=1e-21 Score=167.39 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=80.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-ccccccc--------CC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVNFST--------LD 72 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~~~~--------~~ 72 (143)
+..++|+||||||||||+|+|+| |+| +|. +... ..+++|++|++ .+++..+ ..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~----~~~~------~~~~~~v~q~~~~~~~~ltv~e~l~~~~~ 522 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN------GQV--DGF----PTQE------ECRTVYVEHDIDGTHSDTSVLDFVFESGV 522 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH------TCS--TTC----CCTT------TSCEEETTCCCCCCCTTSBHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC------CCc--CCC----cccc------ceeEEEEcccccccccCCcHHHHHHHhhc
Confidence 35789999999999999999995 443 332 1100 01367888764 2221111 00
Q ss_pred hhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 73 IQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 73 ~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
.. .+.+.++++.+++. ++++ +||||||||+|||||+.+|++|||| ||++.||...++.+
T Consensus 523 ~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD---EPTs~LD~~~~~~l 587 (986)
T 2iw3_A 523 GT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD---EPTNHLDTVNVAWL 587 (986)
T ss_dssp SC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE---STTTTCCHHHHHHH
T ss_pred CH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---CCccCCCHHHHHHH
Confidence 01 45678889888762 4444 7999999999999999999999999 99999999887744
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.4e-21 Score=153.13 Aligned_cols=39 Identities=10% Similarity=-0.152 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||||||+||++|+.+| ++|||| ||++.||...++.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLD---Ept~~LD~~~~~~l 336 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFD---EVDAGIGGAAAIAV 336 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEES---STTTTCCHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence 6999999999999999999 999999 99999999887744
No 63
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=8.1e-23 Score=153.13 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=70.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-----------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST----------- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~----------- 70 (143)
-|.++|+||||||||||+|+|+|+..|++|+|.++|.. +... ..++.+++++|+..+++..+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~----i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK----IPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC----------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc----cCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhc
Confidence 37899999999999999999999999999999999863 2111 13456999999877542211
Q ss_pred CChhhHHHHHHHHH-HhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 71 LDIQDKESVAKLVK-LIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 71 ~~~~~~~~~~~~l~-~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
......+.+.+.++ .+.......+||||+|||++|||++. ++++|.+.+++..++..+..++
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence 01111123333332 11111222379999999999999885 9999966566666665544443
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.82 E-value=5e-21 Score=158.63 Aligned_cols=56 Identities=7% Similarity=-0.049 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336 78 SVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 78 ~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.+.+.++.+++. ++++ +||||||||+|||||+++| ++||+| ||++.||...+..++
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllD---EPt~~LD~~~~~~i~ 586 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLL 586 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEE---STTTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEe---CCCCCCCHHHHHHHH
Confidence 445566666653 3333 7999999999999999987 499999 999999988877543
No 65
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=5.2e-21 Score=134.03 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=67.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||++++.+ |...+.. ..+ .++++|++.-.... ....+....
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~------------d~~---~g~~~~~~~~~~~~---~~~~~~~~~ 64 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK------PTEVISS------------DFC---RGLMSDDENDQTVT---GAAFDVLHY 64 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC------GGGEEEH------------HHH---HHHHCSSTTCGGGH---HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHcc------CCeEEcc------------HHH---HHHhcCcccchhhH---HHHHHHHHH
Confidence 46789999999999999998553 2222211 112 27788876421111 111111111
Q ss_pred H---HHHhhh----hCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhh
Q 032336 82 L---VKLIDK----SNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 82 ~---l~~l~~----~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
. ....+. ......|+|++|||+||||++.+|+++++| ||++.+|..++
T Consensus 65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllD---EPt~~Ld~~~~ 119 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFN---LPEKVCQERNK 119 (171)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEEC---CCHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEe---CCHHHHHHHHh
Confidence 1 111222 133446899999999999999999999999 99999998865
No 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=3.8e-21 Score=151.49 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=84.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCCh-hhHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDI-QDKES 78 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~-~~~~~ 78 (143)
.++|+||||||||||+|+|+|+++|++|+|.++|. +.. + .++++|++. ++.. ...- .....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~----~~t--------~-~~~v~q~~~-~~~ltv~D~~g~~~~~~~ 136 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV----EVT--------M-ERHPYKHPN-IPNVVFWDLPGIGSTNFP 136 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-CCEEEECSS-CTTEEEEECCCGGGSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe----ecc--------e-eEEeccccc-cCCeeehHhhcccchHHH
Confidence 78999999999999999999999999999998874 221 1 278888753 2111 1110 11235
Q ss_pred HHHHHHHhhhhCC---CcCCch--hHHHHHHHHHHhh----------cCCcccccCCccccchhhhhhhhh
Q 032336 79 VAKLVKLIDKSNG---YIFAGM--DASAVEFSKIAVR----------NVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 79 ~~~~l~~l~~~~~---~~lSgG--e~qrv~ia~al~~----------~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
+.++++.+++... ..+|+| |+||+.+|++++. +|+++++| ||++.+|...+++
T Consensus 137 ~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD---EPtsgLD~~~~~~ 204 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN---EADGEPQTFDKEK 204 (413)
T ss_dssp HHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH---HHTTCCTTCCHHH
T ss_pred HHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC---cccccCCHHHHHH
Confidence 6778888876431 126888 9999999999999 99999999 9999988776553
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=3e-21 Score=147.25 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=72.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc------------cc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN------------FS 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~------------~~ 69 (143)
++.++|+||||||||||+++|+|+++|..|. +.+++|+|+..+++ ..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~---------------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHH---------------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTC---------------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCC---------------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 4689999999999999999999999997663 11233333322211 01
Q ss_pred cCChhhHHHHHHHHHHhhhhC--CC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 70 TLDIQDKESVAKLVKLIDKSN--GY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 70 ~~~~~~~~~~~~~l~~l~~~~--~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
.....+.+.+.+.++.++... .. .+|+||+|||++|++++.+|+++++| ||+..++
T Consensus 149 ~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlD---ep~~~~d 208 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILE---GLNVLQT 208 (312)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEE---CTTTTCC
T ss_pred CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEEC---CccccCC
Confidence 111233456777888876211 11 27999999999999999999999999 8877653
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=1.5e-18 Score=132.47 Aligned_cols=39 Identities=8% Similarity=-0.005 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHh----hcCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAV----RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~----~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|+||||||+||++|+ .+|+++++| ||++.||...++.+
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllD---Ep~~~LD~~~~~~l 262 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLD---EVDSPLDDYNAERF 262 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEE---SCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEe---CCCCCCCHHHHHHH
Confidence 6999999999999998 478999999 99999999877644
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=1.2e-21 Score=142.27 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=81.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcccc-HHHHHhhcchhcccccccccc----------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSA-CRKLTKELCDVIEDYSLVNFS----------T 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~~ig~V~Q~~~l~~~~----------~ 70 (143)
+..++|+||||||||||+++|+|++ | |+|.+ |..+. ... ....++.++|+||++.+|+.. .
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 94 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT----TRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE----CSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc----CCCCCcccccCCeEEECCHHHHHHhhhccchhhhhh
Confidence 4578999999999999999999998 5 99998 65321 111 011345689999987654211 0
Q ss_pred CC----hhhHHHHHHHHHHhhhh-CCCcCCchhHHHHHH-----HHHHhhcCCcccccCCccccchhhhhhh
Q 032336 71 LD----IQDKESVAKLVKLIDKS-NGYIFAGMDASAVEF-----SKIAVRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 71 ~~----~~~~~~~~~~l~~l~~~-~~~~lSgGe~qrv~i-----a~al~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
+. ......++++++..... ....+||||+||+++ +++++..|+++++| ||++.++....
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld---e~~~~~d~~~~ 163 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLL---SRLLTRNTENQ 163 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH---HHHHHTCCCCH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH---HHHHhcCCCCH
Confidence 00 01123455556543321 112249999999999 88999999999999 99988876543
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=2.5e-19 Score=137.58 Aligned_cols=81 Identities=19% Similarity=0.074 Sum_probs=63.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|+|+++|++|.|.++|.. .+ .....++.+++++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~---e~---~~~~~~~~i~~~~--------------------- 223 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE---EI---VFKHHKNYTQLFF--------------------- 223 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC---CC---CCSSCSSEEEEEC---------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee---cc---ccccchhEEEEEe---------------------
Confidence 35789999999999999999999999999999998841 11 0000111222221
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~ 125 (143)
.|||+||++||+||..+|+++++| ||++
T Consensus 224 -------------ggg~~~r~~la~aL~~~p~ilild---E~~~ 251 (330)
T 2pt7_A 224 -------------GGNITSADCLKSCLRMRPDRIILG---ELRS 251 (330)
T ss_dssp -------------BTTBCHHHHHHHHTTSCCSEEEEC---CCCS
T ss_pred -------------CCChhHHHHHHHHhhhCCCEEEEc---CCCh
Confidence 179999999999999999999999 8887
No 71
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.73 E-value=1.6e-20 Score=132.12 Aligned_cols=113 Identities=10% Similarity=-0.033 Sum_probs=70.2
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcceeehhhhccccHHHHH-hhcc----hhcccccccccccCC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSNVFYLQAVHNSACRKLT-KELC----DVIEDYSLVNFSTLD 72 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~-~~ig----~V~Q~~~l~~~~~~~ 72 (143)
|...++|+|+||||||||+++|+|+++|+ .|.|.++|..+. ++.......++ +.++ +++|+..+|... ..
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~-~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~-~~ 78 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF-EIDKEGKDSWKIYNSGADVVIASPVKLAFIRR-VS 78 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEEEEEEE-CC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc-cCCccchhHHHHHhcCCceEEECCCcEEEEec-CC
Confidence 55789999999999999999999999998 899999986321 11100123444 4678 788877665211 11
Q ss_pred hhhHHHHHHHHHH-hh-h--hCCCcCCchhHHHHHHHHHHhhcCCcc
Q 032336 73 IQDKESVAKLVKL-ID-K--SNGYIFAGMDASAVEFSKIAVRNVDWD 115 (143)
Q Consensus 73 ~~~~~~~~~~l~~-l~-~--~~~~~lSgGe~qrv~ia~al~~~p~~l 115 (143)
.+....+.+.++. +. + ....-+||||+||++||||+..+|++.
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred hhhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccC
Confidence 1111134455554 32 1 111127999999999999999999874
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=1.9e-19 Score=136.69 Aligned_cols=121 Identities=13% Similarity=0.031 Sum_probs=76.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--Hhhcchhccccc-ccccccCChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYS-LVNFSTLDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~-l~~~~~~~~~~~~~ 78 (143)
++.++|+||||||||||+++|+|+++|++|+|.+.|.+....-.....+.+ +..++|++|++. +++.... .+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v----~e~ 175 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL----SKA 175 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH----HHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH----HHH
Confidence 467899999999999999999999999999999998632110000011223 346999999876 5432211 011
Q ss_pred HHHHH---------HHhhhhC---CCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhh
Q 032336 79 VAKLV---------KLIDKSN---GYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 79 ~~~~l---------~~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~ 133 (143)
+.... +.+++.. .++ +| +||++||||++.+|+ +|++| |++.++...+.
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----ptsglD~~~~~ 239 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQA 239 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE----GGGGGGGHHHH
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe----CCCCcCHHHHH
Confidence 11111 0011110 000 23 899999999999999 99999 46777765554
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.71 E-value=2.1e-18 Score=145.56 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhc---CCcccccCCccccchhhhhhhhhc
Q 032336 77 ESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRN---VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 77 ~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~---p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
..+.++++.+++. .+.+ +||||||||.||++|+.+ |++|+|| |||+.||....+++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l 772 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLD---EPTTGLHPADVERL 772 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEE---CTTTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHH
Confidence 3456777777763 2333 799999999999999996 7999999 99999998887754
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.71 E-value=5e-18 Score=144.25 Aligned_cols=55 Identities=7% Similarity=-0.060 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhC----CCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336 79 VAKLVKLIDKSN----GYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 79 ~~~~l~~l~~~~----~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.++++.+++.. +.+ +||||||||+||++|+.+| ++++|| |||+.||......+.
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~ 888 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLL 888 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEE---CTTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEE---CCCCCCCHHHHHHHH
Confidence 456677777632 333 7999999999999999865 999999 999999998877543
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=1.2e-18 Score=135.01 Aligned_cols=121 Identities=13% Similarity=0.033 Sum_probs=77.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--Hhhcchhccccc-ccccccCChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYS-LVNFSTLDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~-l~~~~~~~~~~~~~ 78 (143)
++.++|+||||||||||++.|+|+++|++|+|.+.|.+....-.....+.+ +..++|++|++. +++.... .+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv----~e~ 232 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL----SKA 232 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH----HHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH----HHH
Confidence 357899999999999999999999999999999998632110000011222 356999999876 5432211 011
Q ss_pred HHHHHH---------HhhhhC---CCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhh
Q 032336 79 VAKLVK---------LIDKSN---GYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 79 ~~~~l~---------~l~~~~---~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~ 133 (143)
+..... .+++.. ..+ +| +||++||||++.+|+ +|++| |++.++...+.
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----pttglD~~~~~ 296 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQA 296 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE----GGGGGGGHHHH
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc----CCCCCCHHHHH
Confidence 111110 011100 000 23 899999999999999 99999 56777766554
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=9e-18 Score=142.78 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336 77 ESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 77 ~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
..+.++|+.+++. .+.. +||||+|||+|||||+.+| ++|+|| |||+.||...++++.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD---EPTsGLD~~~~~~L~ 848 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD---EPTVGLHFEDVRKLV 848 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE---STTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE---CCCCCCCHHHHHHHH
Confidence 3456677777763 2333 7999999999999999865 799999 999999998877543
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.69 E-value=2.6e-18 Score=130.60 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=64.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------cCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------TLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------~~~~~~ 75 (143)
+..++|+||||||||||+++|+|++ +|+|... ++|++.+|... .+....
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~----------------------v~q~~~lf~~ti~~~ni~~~~~~ 180 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF----------------------ANHKSHFWLASLADTRAALVDDA 180 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG----------------------GGTTSGGGGGGGTTCSCEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE----------------------ecCccccccccHHHHhhccCccc
Confidence 4579999999999999999999998 7888532 33333322100 000000
Q ss_pred HHHHHHHHHH-hh-hhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 76 KESVAKLVKL-ID-KSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 76 ~~~~~~~l~~-l~-~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
...+.+.++. +. ..+...+||||||| |||++.+|++|| ++.+|.....++
T Consensus 181 ~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl-------Ts~LD~~~~~~i 232 (305)
T 2v9p_A 181 THACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV-------TSNIDVQAEDRY 232 (305)
T ss_dssp CHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE-------EESSCSTTCGGG
T ss_pred cHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE-------ECCCCHHHHHHH
Confidence 1134444554 31 12244589999999 999999999999 346777665544
No 78
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=4e-17 Score=139.16 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhC----CCc--CCchhHHHHHHHHHHhhcC---CcccccCCccccchhhhhhhhhcc
Q 032336 79 VAKLVKLIDKSN----GYI--FAGMDASAVEFSKIAVRNV---DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 79 ~~~~l~~l~~~~----~~~--lSgGe~qrv~ia~al~~~p---~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+.++++.+++.. +.+ +||||||||+||++|+.+| ++|+|| |||+.||....+++.
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~ 906 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILD---EPTTGLHFDDIRKLL 906 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEE---STTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHHH
Confidence 456677777642 333 7999999999999999865 999999 999999998877543
No 79
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=4.3e-18 Score=129.38 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=71.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHH--HhhcchhcccccccccccCChhhHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKL--TKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
..++|+||||||||||+++|+|+++|++|+|.+.|.+....-.......+ +..+++++|++.+++.... .+.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v----~~~v~ 178 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALA----YDAVQ 178 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHH----HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHH----HHHHH
Confidence 57899999999999999999999999999999998633211001112222 3568999998876432211 11111
Q ss_pred HHHH-Hhh-----hhCCC-----cCCchhHHHHHHHHHHhhcCC--ccccc
Q 032336 81 KLVK-LID-----KSNGY-----IFAGMDASAVEFSKIAVRNVD--WDYYR 118 (143)
Q Consensus 81 ~~l~-~l~-----~~~~~-----~lSgGe~qrv~ia~al~~~p~--~llld 118 (143)
.... ..+ ..... ..+..++||+++|||++.+|+ ++.+|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD 229 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 1111 111 11111 024567899999999999999 55566
No 80
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.63 E-value=3.7e-16 Score=121.36 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=35.9
Q ss_pred CCchhHHHHHHHHHHh------hcCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAV------RNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~------~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+|||+||+||+ .+|+++|+| ||++.||...++.+
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllD---Ept~~LD~~~~~~~ 324 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFID---EGFSSLDTENKEKI 324 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEE---SCCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEe---CCCccCCHHHHHHH
Confidence 7999999999999999 699999999 99999999887643
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.60 E-value=2e-16 Score=117.80 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=58.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.++|. + +.|++|....+... .
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~----~------------i~~~~~~~~~~v~q----~------ 78 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED----P------------IEYVFKHKKSIVNQ----R------ 78 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES----S------------CCSCCCCSSSEEEE----E------
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC----c------------ceeecCCcceeeeH----H------
Confidence 3578999999999999999999999998 999998874 2 23444432111000 0
Q ss_pred HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336 81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL 124 (143)
Q Consensus 81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~ 124 (143)
.+++.. ..-|++||++|+++|+++++| ||+
T Consensus 79 ----~~gl~~-------~~l~~~la~aL~~~p~illlD---Ep~ 108 (261)
T 2eyu_A 79 ----EVGEDT-------KSFADALRAALREDPDVIFVG---EMR 108 (261)
T ss_dssp ----EBTTTB-------SCHHHHHHHHHHHCCSEEEES---CCC
T ss_pred ----HhCCCH-------HHHHHHHHHHHhhCCCEEEeC---CCC
Confidence 111110 122899999999999999999 886
No 82
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.58 E-value=5.2e-17 Score=116.38 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=64.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
++.++|+||||||||||+++|+|++.|.-+-|.-+.. . ......+... ...+.+.. ....+.+.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~-~-~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~ 72 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY-Y-KDLGHLPLEE---RLRVNYDH--------PDAFDLALYLE 72 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC-B-CCCTTSCHHH---HHHSCTTS--------GGGBCHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc-c-cCcccccHHH---hcCCCCCC--------hhhhhHHHHHH
Confidence 4679999999999999999999998751111111110 0 0001111111 11111110 11123445667
Q ss_pred HHHHhhhh-----CCCcCCchh----HHHHHHHHHHhhcCCcccccCCccccch
Q 032336 82 LVKLIDKS-----NGYIFAGMD----ASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 82 ~l~~l~~~-----~~~~lSgGe----~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
+++.++.. ..+.+|+|+ +||++++++++.+|.++++| ||++.
T Consensus 73 ~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~d---e~~~~ 123 (211)
T 3asz_A 73 HAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYP---KELRD 123 (211)
T ss_dssp HHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSS---HHHHT
T ss_pred HHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccC---HHHHH
Confidence 77776653 222357775 47889999999999999999 88876
No 83
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=1.3e-17 Score=136.97 Aligned_cols=117 Identities=12% Similarity=0.078 Sum_probs=63.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCccc-CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSL-IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL 82 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~ 82 (143)
.++|+|||||||||||++|+|+..| ++|.|.++|..+.. ........+++.++|+||++.++++.++ .+.+...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv----~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL-KKLVNEDKWRGKVSYQDYEIEISDASEV----EKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE-EECSSSSCCEEEESCC---CCCCCHHHH----HTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE-ecCCccccceeEEeeecccccCCCHHHH----HHHHHHH
Confidence 4899999999999999999999988 79999999974310 1111122456789999999877644322 1122222
Q ss_pred HHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccc------cchhhhhhh
Q 032336 83 VKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFH------LFQSLAEVQ 132 (143)
Q Consensus 83 l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~------~~~~~~~~~ 132 (143)
...++... .+...+.+.++.+....|+++++| || ++.++...+
T Consensus 122 ~~~~~~~~----~~~s~~~i~l~i~~~~~p~LlLlD---ePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 122 QNAIAGEG----MGISHELITLEISSRDVPDLTLID---LPGITRVAVGNQPADIG 170 (608)
T ss_dssp HHHHHCSS----SCCCSCCEEEEEEESSSCCEEEEE---CCC------CCSSCSHH
T ss_pred HHHhcCCc----cccchHHHHHHhcCCCCCceeEee---CCCccccccCCCCHHHH
Confidence 22222111 111122333333444578888888 77 776665554
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.56 E-value=3.9e-17 Score=117.23 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=38.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
+..++|+||||||||||+|+|+|+++ .+.+++..... ... ...++.++|+||++.+|
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~--~~~--~~~~~~i~~~~q~~~~~ 76 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTR--APR--PGEVDGVDYHFIDPTRF 76 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESS--CCC--TTCCBTTTBEECCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC----ceEEccccccc--CCc--ccccCCCeeEecCHHHH
Confidence 46789999999999999999999985 34444321110 000 11245699999987654
No 85
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=5.2e-15 Score=105.27 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=73.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc-----ccCCceEEEcc-------eeehhhhccc--------cHHHHHhhcchhcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL-----SLIGSNICCSN-------VFYLQAVHNS--------ACRKLTKELCDVIE 61 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~-----~~~~G~i~~~g-------~~~~~~~~~~--------~~~~~~~~ig~V~Q 61 (143)
++.++|+|+||||||||++.|+|.. .|+.|++.+.+ ..+. +.... ....+++.+++++|
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 104 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLE 104 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-ECCCCC------CCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999998 78888775422 1110 11111 11234455666666
Q ss_pred ccccc-----c-cccC-ChhhHHHHHHHHHHhhhh-----CCC-cCCchhHHH-HHHHHHHhhcCCcccccCCccccchh
Q 032336 62 DYSLV-----N-FSTL-DIQDKESVAKLVKLIDKS-----NGY-IFAGMDASA-VEFSKIAVRNVDWDYYRYPSFHLFQS 127 (143)
Q Consensus 62 ~~~l~-----~-~~~~-~~~~~~~~~~~l~~l~~~-----~~~-~lSgGe~qr-v~ia~al~~~p~~llld~~~~~~~~~ 127 (143)
..... . .... .......+.++++..++. +.. .+|+||+|+ +..+++++.+|.++++| ||++.+
T Consensus 105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sal 181 (210)
T 1pui_A 105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV---ETFSSL 181 (210)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE---EECBTT
T ss_pred hhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce---EEEeec
Confidence 43211 0 0111 111122344445444431 221 258999999 89999999999988888 999998
Q ss_pred hhhhhhh
Q 032336 128 LAEVQEK 134 (143)
Q Consensus 128 ~~~~~~~ 134 (143)
+....++
T Consensus 182 ~~~~~~~ 188 (210)
T 1pui_A 182 KKQGVDK 188 (210)
T ss_dssp TTBSHHH
T ss_pred CCCCHHH
Confidence 8866554
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.54 E-value=4.4e-17 Score=116.11 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=68.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc----cccccCChhhHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL----VNFSTLDIQDKES 78 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l----~~~~~~~~~~~~~ 78 (143)
..++|+||||||||||+++|+|+++ ++| |.++|... ... ..+++.++|++|+..- +........+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~----~~~--~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT----EEV--RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC----CEE--ETTSSEEEEEEEETTSCEEEEEECCCCCCSSSC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec----chh--HhhhceEEEEEEecccceehhhcccccCCcccc
Confidence 5689999999999999999999999 999 99888532 111 1246779999997521 0000000000000
Q ss_pred HHHHHHHhhhhCCC--cCCchhHHHH-HHHH---HHhhcCCcccccCCcc--ccchhhh
Q 032336 79 VAKLVKLIDKSNGY--IFAGMDASAV-EFSK---IAVRNVDWDYYRYPSF--HLFQSLA 129 (143)
Q Consensus 79 ~~~~l~~l~~~~~~--~lSgGe~qrv-~ia~---al~~~p~~llld~~~~--~~~~~~~ 129 (143)
-.....+ .+|+||++++ ++++ |++.+|+++++| | |+-..+.
T Consensus 74 -------~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilD---E~g~~~~~~~ 122 (189)
T 2i3b_A 74 -------ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVID---EIGKMELFSQ 122 (189)
T ss_dssp -------CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEEC---CCSTTTTTCS
T ss_pred -------ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEe---CCCccccccH
Confidence 0000111 1467888777 3344 578999999999 6 6644443
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.51 E-value=3.8e-16 Score=114.81 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=64.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc------------
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS------------ 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~------------ 69 (143)
++.+||+||||||||||+++|+|++ |.+.++ ..++.+++++|+. ++...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------------ccCCceEEEeCCc-CccccCHhHhhhhhccC
Confidence 4679999999999999999999976 443221 1234466666663 22100
Q ss_pred -cCC---hhhHHHHHHHHHHhhh-hCCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 70 -TLD---IQDKESVAKLVKLIDK-SNGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 70 -~~~---~~~~~~~~~~l~~l~~-~~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
.+. ..+.+.+.+.++.+.- .... .+|+|++||+.+ ++++.+|+++++| +|+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD---g~~~~~~ 147 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE---GILVFYS 147 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE---CTTTTTS
T ss_pred CCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEe---Ccccccc
Confidence 000 1123344555554421 1222 268999999987 5888899999999 6654433
No 88
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.51 E-value=3.6e-16 Score=121.15 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCC----ceEEEcceeehhhhccccHHHHHhhcchhccccccccc--------c
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIG----SNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--------S 69 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~----G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--------~ 69 (143)
+..++|+||||||||||+++|+|+++|++ |++++++.....+. ......+ ..|++++|++.++.. .
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 46789999999999999999999999999 88876421000111 1222233 458888887654311 0
Q ss_pred cCChhhH------------HHHHHHHHH--hhh--hC----CC-----cCCchhHHHHHHHHHH---hh--cCCccccc
Q 032336 70 TLDIQDK------------ESVAKLVKL--IDK--SN----GY-----IFAGMDASAVEFSKIA---VR--NVDWDYYR 118 (143)
Q Consensus 70 ~~~~~~~------------~~~~~~l~~--l~~--~~----~~-----~lSgGe~qrv~ia~al---~~--~p~~llld 118 (143)
.....+. ..+..++.. .++ .+ .+ -+|+|++||.++++++ .. ++.++++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild 326 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE 326 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 0111010 011111111 111 01 11 1478999999999999 66 89999999
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=7.9e-15 Score=106.85 Aligned_cols=118 Identities=11% Similarity=-0.083 Sum_probs=65.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHh--CCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMS--QFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~--g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~ 79 (143)
+..++|+||||||||||+++|+ ++.++..|.+++.+.. .........+.+++++|+.................
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-----RARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-----CHHHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC-----CHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 3578999999999999999999 6656777878776631 11223344567899888753221111000000000
Q ss_pred HHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhh
Q 032336 80 AKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSL 128 (143)
Q Consensus 80 ~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~ 128 (143)
........ ......+..+........+-+.+|+++++| ||++.++
T Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~p~~lilD---ep~~~ld 149 (251)
T 2ehv_A 105 GLPSEEKF-VLEDRFNVDNFLRYIYRVVKAINAKRLVID---SIPSIAL 149 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEE---CHHHHHH
T ss_pred ccccccce-eccCcccHHHHHHHHHHHHHhhCCCEEEEc---cHHHHHh
Confidence 00000000 000011233334444445556899999999 9998886
No 90
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.50 E-value=9.8e-15 Score=115.83 Aligned_cols=104 Identities=7% Similarity=-0.055 Sum_probs=65.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccc-----cHHHHHhhcchhccc-ccccccccCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNS-----ACRKLTKELCDVIED-YSLVNFSTLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-----~~~~~~~~ig~V~Q~-~~l~~~~~~~~~~ 75 (143)
+..++|+||||||||||+++|+|+.+|+.|.|.+.|... .++... ....+++.++|++|+ ..++...+.. +
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~-~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~-~- 233 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG-REVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGA-A- 233 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-HHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHH-H-
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec-HHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHH-H-
Confidence 357899999999999999999999999999999998510 011111 123467789999995 3333222111 1
Q ss_pred HHHHHHHHHHhhhhCC---------CcCCchhHHHHHHHHHHhhcCCc
Q 032336 76 KESVAKLVKLIDKSNG---------YIFAGMDASAVEFSKIAVRNVDW 114 (143)
Q Consensus 76 ~~~~~~~l~~l~~~~~---------~~lSgGe~qrv~ia~al~~~p~~ 114 (143)
.+....+.+..... .-+|+|| |||++| +.+|++
T Consensus 234 --~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 234 --YATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp --HHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC
T ss_pred --HHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc
Confidence 11111121111111 1148898 999999 788876
No 91
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.50 E-value=9.6e-17 Score=126.65 Aligned_cols=114 Identities=15% Similarity=0.072 Sum_probs=68.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcch---------hcccccccccccC--
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCD---------VIEDYSLVNFSTL-- 71 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~---------V~Q~~~l~~~~~~-- 71 (143)
..++|+|||||||||||++|+|+++|++|+|.+.+..+...........++..+++ +.|++.++.....
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 46899999999999999999999999999999877422100000000011223443 5588775311110
Q ss_pred ---------------------ChhhHHHHHHHHHHhhhhC---CCcCCchhHHHHHHHHHHhhcCCccccc
Q 032336 72 ---------------------DIQDKESVAKLVKLIDKSN---GYIFAGMDASAVEFSKIAVRNVDWDYYR 118 (143)
Q Consensus 72 ---------------------~~~~~~~~~~~l~~l~~~~---~~~lSgGe~qrv~ia~al~~~p~~llld 118 (143)
...+...+.+.|..+++.. ...+|||++|| |||+++.+|++....
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~~~ 316 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPYEA 316 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEEEC
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccCCC
Confidence 0011111222333344321 11279999999 999999999987643
No 92
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=2.9e-15 Score=116.02 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=63.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEc-ceeehhhhccccHHHHHhhcchhcccccccccc--------cCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCS-NVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS--------TLD 72 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~--------~~~ 72 (143)
..++|+||||||||||+++|+|... |..|+|.+. |. ... ...+..+++++|+..++... ...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~----g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~ 287 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL----GQH----TTTAARLYHFPHGGDVIDSPGVREFGLWHLE 287 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------CCCEEEECTTSCEEEECHHHHTCCCCCCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCC----Ccc----ceEEEEEEEECCCCEecCcccHHHhhhcCCC
Confidence 4689999999999999999999999 999999876 53 111 12335689999987654211 111
Q ss_pred hh-hHHHHHHHHHHhhhh---CCCc--CCchhHHHHHHHHHHhhcCC
Q 032336 73 IQ-DKESVAKLVKLIDKS---NGYI--FAGMDASAVEFSKIAVRNVD 113 (143)
Q Consensus 73 ~~-~~~~~~~~l~~l~~~---~~~~--lSgGe~qrv~ia~al~~~p~ 113 (143)
.+ ....+.++++.+++. +..+ +| |++||+++|++++...+
T Consensus 288 ~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R 333 (358)
T 2rcn_A 288 PEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETR 333 (358)
T ss_dssp HHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHH
Confidence 21 123345556666542 2222 58 99999999999875444
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.47 E-value=1.7e-14 Score=108.41 Aligned_cols=114 Identities=8% Similarity=-0.052 Sum_probs=67.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhhcchhcccccccc--ccc---CChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN--FST---LDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~--~~~---~~~~~ 75 (143)
+..++|+||||||||||++.|++...|.+| .|.+.+. . .+..++++++..+++...+.. ... ...++
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~----e---~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML----E---ESVEETAEDLIGLHNRVRLRQSDSLKREIIENGK 107 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES----S---SCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC----c---CCHHHHHHHHHHHHcCCChhhccccccCCCCHHH
Confidence 357899999999999999999999999877 7755442 1 123345555555554433211 010 01111
Q ss_pred -HHHHHHHHHHhh--hhCC-CcCCchh-HHHHHHHHHHhhcCCcccccCCccccch
Q 032336 76 -KESVAKLVKLID--KSNG-YIFAGMD-ASAVEFSKIAVRNVDWDYYRYPSFHLFQ 126 (143)
Q Consensus 76 -~~~~~~~l~~l~--~~~~-~~lSgGe-~qrv~ia~al~~~p~~llld~~~~~~~~ 126 (143)
.+.+.++++... +.+. ...+.++ +|++. |++++.+|+++++| ||++.
T Consensus 108 ~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilD---ept~~ 159 (296)
T 1cr0_A 108 FDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILD---HISIV 159 (296)
T ss_dssp HHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEE---EEC--
T ss_pred HHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEc---Ccccc
Confidence 112222222112 2222 2246677 67777 99999999999999 77773
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=1.1e-15 Score=115.75 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=53.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC-cccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCCh---
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF-LSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDI--- 73 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~--- 73 (143)
-+.++|+||||||||||+++|.|. ..|++| +.++|.. ... . . ..+.+++++|...+.... +...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~----~~~-t-~-~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK----IER-T-V-QIEASTVEIEERGVKLRLTVVDTPGYGDA 89 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC-----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc----cCC-c-c-eEeeEEEEecCCCcccCcchhhhhhhhhh
Confidence 367899999999999999999998 888999 8777742 211 1 1 124578888875532111 1100
Q ss_pred -hhHHHHHHHHHHh-hhhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccch-hhh
Q 032336 74 -QDKESVAKLVKLI-DKSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQ-SLA 129 (143)
Q Consensus 74 -~~~~~~~~~l~~l-~~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~-~~~ 129 (143)
...+....+.+.+ ...+.+. +|||+|||+.+|||++ ++++| ||+.. ++.
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ld---ePt~~~Ld~ 143 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFI---SPFGHGLKP 143 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEE---CSSSSSCCH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeee---cCcccCCCH
Confidence 0001111111111 1112222 5899999999999886 88999 66653 444
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.43 E-value=3.4e-14 Score=99.97 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=61.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||+++|++. ++.|.|.+++. ++.... ..+..++|++|.... .......-......
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d----~~~~~~--~~~~~~~~~~~~~~~--~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSD----DLWGYI--KHGRIDPWLPQSHQQ--NRMIMQIAADVAGR 78 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTT----HHHHTC--CSSCCCTTSSSHHHH--HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEccc----chhhhh--hcccccCCccchhhh--hHHHHHHHHHHHHH
Confidence 357899999999999999999997 78899999874 221110 001235666664320 00000000000000
Q ss_pred H-----------------HHHhhhhCC--CcCCchhHHHHHHHHHHhhcCCccc
Q 032336 82 L-----------------VKLIDKSNG--YIFAGMDASAVEFSKIAVRNVDWDY 116 (143)
Q Consensus 82 ~-----------------l~~l~~~~~--~~lSgGe~qrv~ia~al~~~p~~ll 116 (143)
. ++.+..... ..+|+|++|++.++|++..+|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~ll 132 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLS 132 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCC
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccC
Confidence 0 000000011 2368999999999999999998763
No 96
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=7.6e-15 Score=111.27 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=61.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHH-hhcchhccccccc-----cccc--
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLT-KELCDVIEDYSLV-----NFST-- 70 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~-~~ig~V~Q~~~l~-----~~~~-- 70 (143)
+..++|+||||||||||+++|+ +.+|++|+|.+ +|+... ... ...+ +.++||+|.|.+. +..+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t----~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~e 238 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT----TGV-RLIPFGKGSFVGDTPGFSKVEATMFVKPR 238 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC----CCE-EEEEETTTEEEESSCCCSSCCGGGTSCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce----eeE-EEEEcCCCcEEEECcCcCcCcccccCCHH
Confidence 3568999999999999999999 99999999999 775322 111 0111 2589999887431 1110
Q ss_pred -----C---------------ChhhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHH
Q 032336 71 -----L---------------DIQDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSK 106 (143)
Q Consensus 71 -----~---------------~~~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~ 106 (143)
+ ..+....+.++++.+++. +.+. +||.+|++++|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 112234577778777663 2232 6888888888886
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.40 E-value=1.2e-13 Score=99.30 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=59.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-------CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-------IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~ 74 (143)
+..++|+||||||||||+++|+|...+ ..+.+++++. .. .. .+.+++++|...+++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~----~~--~~----~~~i~~~~~~~~~~~~------ 88 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE----NT--FR----PERIREIAQNRGLDPD------ 88 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS----SC--CC----HHHHHHHHHHTTSCHH------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC----CC--CC----HHHHHHHHHHcCCCHH------
Confidence 467999999999999999999995544 3446777663 11 11 1235666666544211
Q ss_pred hHHHHHHHHHHhhhhCCCcCCch-hHHHHHHHHHHhh-------cCCcccccCCccccchhhh
Q 032336 75 DKESVAKLVKLIDKSNGYIFAGM-DASAVEFSKIAVR-------NVDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~~~~~lSgG-e~qrv~ia~al~~-------~p~~llld~~~~~~~~~~~ 129 (143)
.+.+.+.+. ...+.+ +++.+..+++++. +|+++++| ||++.++.
T Consensus 89 ------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilD---e~~~~l~~ 140 (231)
T 4a74_A 89 ------EVLKHIYVA--RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD---SLTSHFRS 140 (231)
T ss_dssp ------HHHHTEEEE--ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEE---TSSHHHHH
T ss_pred ------HHhhcEEEE--ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEEC---ChHHHhcc
Confidence 111111111 111222 2333444555544 89999999 78877665
No 98
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.40 E-value=6.6e-15 Score=105.62 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=63.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc---CCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL---IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKES 78 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~ 78 (143)
++.++|+||||||||||+++|+|+++| ..|.|.++|... . ... ...++..... .. + ...+...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~----~---~~~-~~~~~~~~~~-~~-~----~~~~~~~ 87 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL----D---NRL-LEPRGLLPRK-GA-P----ETFDFEG 87 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC----C---HHH-HGGGTCGGGT-TS-G----GGBCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC----C---HHH-HHHhcccccC-CC-C----chhhHHH
Confidence 468999999999999999999999986 478888777421 1 111 1222221110 00 0 0011122
Q ss_pred HHHHHHHhhhh---------CCCcCCchhHHHHHHH-HHHhhcCCccccc
Q 032336 79 VAKLVKLIDKS---------NGYIFAGMDASAVEFS-KIAVRNVDWDYYR 118 (143)
Q Consensus 79 ~~~~l~~l~~~---------~~~~lSgGe~qrv~ia-~al~~~p~~llld 118 (143)
..+.+..+... .....|+||+|+++++ ++++.++.++++|
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~d 137 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFD 137 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBC
T ss_pred HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccC
Confidence 33334433211 1222488999999998 8899999988888
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=6.4e-14 Score=107.43 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc--hhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC--DVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig--~V~Q~~~l~ 66 (143)
.+.++|+|||||||||++++|+|+++|++|+|.+.|.+....-.....+.+++.++ +++|...++
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~ 195 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD 195 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCC
Confidence 36789999999999999999999999999999999863321101112233455555 777876654
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.39 E-value=2.6e-13 Score=109.65 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=63.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCce--EEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSN--ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESV 79 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~--i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~ 79 (143)
+..++|+||||||||||+++++|...+. |+ +++.++ + +...+..... ... ...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~e----e----~~~~l~~~~~----~~g------~~~------ 335 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYE----E----SRAQLLRNAY----SWG------MDF------ 335 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESS----S----CHHHHHHHHH----TTS------CCH------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEe----C----CHHHHHHHHH----HcC------CCH------
Confidence 3578999999999999999999998875 54 455442 1 1112221110 000 111
Q ss_pred HHHHHHhh---hhCCCc--CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 80 AKLVKLID---KSNGYI--FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 80 ~~~l~~l~---~~~~~~--lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
.++ ...+ +.+.++ +|+||+||+.+|++++.+|+++++| | ++.++..
T Consensus 336 ~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p---~~~Ld~~ 386 (525)
T 1tf7_A 336 EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-S---LSALARG 386 (525)
T ss_dssp HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-C---HHHHTSS
T ss_pred HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-C---hHHHHhh
Confidence 111 1222 223333 6999999999999999999999999 4 5566554
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.39 E-value=1.1e-13 Score=116.12 Aligned_cols=93 Identities=10% Similarity=-0.095 Sum_probs=66.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc-cCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS-LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
..++|+||||||||||||+++|+.. +..|.+... .+..+++++| ++...+. .+.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa---------------~~~~i~~v~~---i~~~~~~--~d~----- 631 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA---------------EEAHLPLFDG---IYTRIGA--SDD----- 631 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS---------------SEEEECCCSE---EEEECCC----------
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh---------------hccceeeHHH---hhccCCH--HHH-----
Confidence 5689999999999999999999874 677765310 1234788876 3322222 110
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHH--hhcCCcccccCCccc---cchhhhhh
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIA--VRNVDWDYYRYPSFH---LFQSLAEV 131 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al--~~~p~~llld~~~~~---~~~~~~~~ 131 (143)
+ ....|+++++++.+++++ +.+|+++|+| || |+.+|...
T Consensus 632 -l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLD---EpgrGTs~lD~~~ 675 (765)
T 1ewq_A 632 -L-------AGGKSTFMVEMEEVALILKEATENSLVLLD---EVGRGTSSLDGVA 675 (765)
T ss_dssp -----------CCSHHHHHHHHHHHHHHHCCTTEEEEEE---STTTTSCHHHHHH
T ss_pred -H-------HhcccHHHHHHHHHHHHHHhccCCCEEEEE---CCCCCCCCcCHHH
Confidence 0 012478899999999999 9999999999 99 99998754
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.38 E-value=2.5e-14 Score=115.63 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=47.2
Q ss_pred eeeEEEECCCCCcHHHHHHH--HhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNG--MSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS 64 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~--l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~ 64 (143)
+..++|+||||||||||+++ ++|+++|++|.|+++|.. ........++.+||++|++.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~-----~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-----TPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-----CHHHHHHHHGGGTCCHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC-----CHHHHHHHHHHcCCChHHhh
Confidence 35789999999999999999 789999999999999852 12233455677999999865
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.37 E-value=1.4e-13 Score=106.75 Aligned_cols=56 Identities=21% Similarity=0.129 Sum_probs=41.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhc-ccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVI-EDY 63 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~-Q~~ 63 (143)
+..++|+||||||||||+++|+|+++|++|.|.++|.. .+ .....++.+++++ |+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~---e~---~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP---EL---FLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS---CC---CCTTCSSEEEEECC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc---cc---CccccCCEEEEeecCcc
Confidence 45789999999999999999999999999999998741 11 1112345578887 654
No 104
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.37 E-value=6.6e-14 Score=105.99 Aligned_cols=60 Identities=17% Similarity=0.023 Sum_probs=37.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHHhhcchhcccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSL 65 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l 65 (143)
+..++|+||||||||||+++|+|+.+|++|+|.+ +|..+. ........+.+++|+|.+.+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t----~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT----TTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC----CSCCEEECTTSCEEESSCSS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce----eeeEEEEcCCCCEEEECcCC
Confidence 3568999999999999999999999999999998 775322 11100011358999999864
No 105
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.36 E-value=3.4e-12 Score=97.93 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=32.9
Q ss_pred CCchhHH------HHHHHHHHhhcCCcccccCCccccchhhhhhhhh
Q 032336 94 FAGMDAS------AVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQEK 134 (143)
Q Consensus 94 lSgGe~q------rv~ia~al~~~p~~llld~~~~~~~~~~~~~~~~ 134 (143)
+|||||| |+++|++++.+|+++++| ||++.||...+..
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllD---Ep~~~LD~~~~~~ 292 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILD---EPTPYLDEERRRK 292 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEE---CCCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE---CCCCCCCHHHHHH
Confidence 7999999 567778888899999999 9999999877653
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.36 E-value=1e-13 Score=107.35 Aligned_cols=82 Identities=18% Similarity=0.099 Sum_probs=53.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
..++|+||||||||||+++|+|+++|+ +|.|...+. +.. .. .....++++|....... ..-.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed----~~e-~~---~~~~~~~v~q~~~~~~~--~~~~------- 186 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED----PIE-FV---HESKKCLVNQREVHRDT--LGFS------- 186 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES----SCC-SC---CCCSSSEEEEEEBTTTB--SCHH-------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC----cHH-hh---hhccccceeeeeecccc--CCHH-------
Confidence 468999999999999999999999987 566654331 111 10 11123445543221000 0000
Q ss_pred HHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336 82 LVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL 124 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~ 124 (143)
-+||+||.++|+++++| ||+
T Consensus 187 --------------------~~La~aL~~~PdvillD---Ep~ 206 (356)
T 3jvv_A 187 --------------------EALRSALREDPDIILVG---EMR 206 (356)
T ss_dssp --------------------HHHHHHTTSCCSEEEES---CCC
T ss_pred --------------------HHHHHHhhhCcCEEecC---CCC
Confidence 08999999999999999 777
No 107
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.36 E-value=1.3e-13 Score=107.24 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=60.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-CceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-GSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVA 80 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~ 80 (143)
+..++|+||||||||||+++|+|+++|+ +|+|.+.+. ++. + ..+..+++|+|..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~----~~e-~---~~~~~~~~v~Q~~----------------- 190 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED----PIE-Y---VFKHKKSIVNQRE----------------- 190 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES----SCC-S---CCCCSSSEEEEEE-----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc----cHh-h---hhccCceEEEeee-----------------
Confidence 3568999999999999999999999998 899976653 221 1 1334578888741
Q ss_pred HHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCcccc
Q 032336 81 KLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHL 124 (143)
Q Consensus 81 ~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~ 124 (143)
++... ..+ +.+++++|.++|+++++| ||+
T Consensus 191 -----~g~~~-~~~------~~~l~~~L~~~pd~illd---E~~ 219 (372)
T 2ewv_A 191 -----VGEDT-KSF------ADALRAALREDPDVIFVG---EMR 219 (372)
T ss_dssp -----BTTTB-SCS------HHHHHHHTTSCCSEEEES---CCC
T ss_pred -----cCCCH-HHH------HHHHHHHhhhCcCEEEEC---CCC
Confidence 11100 111 468999999999999999 776
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.36 E-value=3.6e-14 Score=104.11 Aligned_cols=35 Identities=34% Similarity=0.670 Sum_probs=32.2
Q ss_pred eeEEEECCCCCcHHHHHHHHh---CCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~~~g 37 (143)
..++|+||||||||||+++|+ |+..|+.|+|.+++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 468999999999999999999 99999999998765
No 109
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.34 E-value=6.5e-13 Score=102.52 Aligned_cols=37 Identities=14% Similarity=-0.085 Sum_probs=34.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+||||||||||+++|+|+.+|+.|.|.+.|+
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4578999999999999999999999999999988874
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.32 E-value=4.3e-13 Score=103.55 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=71.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc--ccCC----ce-EEEcceeehhhhccccHHHHHhhcchhcccccccccccCChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL--SLIG----SN-ICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~ 74 (143)
+..++|+||||||||||++.+++.. +|+. |. |++++. +. . .++++++++|.+.++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e----~~--~----~~~~i~~i~q~~~~~~~------ 194 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE----NT--F----RPERIREIAQNRGLDPD------ 194 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS----SC--C----CHHHHHHHHHTTTCCHH------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC----CC--C----CHHHHHHHHHHcCCCHH------
Confidence 3578999999999999999999988 6666 67 788774 21 1 13457888887654311
Q ss_pred hHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHh-------hcCCcccccCCccccchhhhh
Q 032336 75 DKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAV-------RNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~-------~~p~~llld~~~~~~~~~~~~ 130 (143)
.+++.+.+.. ...+.++.|++.++++++ .+|+++++| ||++.++..
T Consensus 195 ------~v~~ni~~~~-~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD---s~ta~ld~~ 247 (349)
T 1pzn_A 195 ------EVLKHIYVAR-AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD---SLTSHFRSE 247 (349)
T ss_dssp ------HHGGGEEEEE-CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE---TSSTTHHHH
T ss_pred ------HHhhCEEEEe-cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEe---CchHhhhhh
Confidence 1111111111 112456788888888888 579999999 888888764
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.32 E-value=1.4e-12 Score=93.73 Aligned_cols=111 Identities=12% Similarity=-0.040 Sum_probs=65.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAKL 82 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~~ 82 (143)
..++|+||||||||||++.|++...+.+|.|.+.+. +............+++.+|.............. ..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 94 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT----EESRDSIIRQAKQFNWDFEEYIEKKLIIIDALM-KE---- 94 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES----SSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc----ccCHHHHHHHHHHhcchHHHHhhCCEEEEeccc-cc----
Confidence 568999999999999999999988888888877653 111111222223456655543211000000000 00
Q ss_pred HHHhhhhCCCcCCchhHHHHHHHHHHhhcCC--cccccCCccccchh
Q 032336 83 VKLIDKSNGYIFAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQS 127 (143)
Q Consensus 83 l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~ 127 (143)
... ...... .+.++.++...+.+...+|+ ++++| ||++.+
T Consensus 95 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~llilD---e~~~~~ 136 (235)
T 2w0m_A 95 KED-QWSLVN-LTPEELVNKVIEAKQKLGYGKARLVID---SVSALF 136 (235)
T ss_dssp --C-TTBCSS-CCHHHHHHHHHHHHHHHCSSCEEEEEE---TGGGGS
T ss_pred cCc-eeeecC-CCHHHHHHHHHHHHHhhCCCceEEEEE---CchHhh
Confidence 000 000111 26777777777777778999 99999 888665
No 112
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.31 E-value=4.5e-13 Score=92.74 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=42.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
+..++|+||||||||||+|+|+|++ |++|+|.++|..+. .... .+ .+++|++.++
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~---~~~~---~~---~~~~q~~~l~ 87 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV---EEYN---IA---GKMIYHFDLY 87 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE---EEEE---ET---TEEEEEEECT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee---eecc---CC---Ccceeccccc
Confidence 3578999999999999999999999 99999999885321 1111 11 2789988776
No 113
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.31 E-value=3.7e-14 Score=101.23 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=37.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc-------------cCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS-------------LIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l 65 (143)
+..++|+||||||||||+++|+|+++ |..|+ ++|. ++...+...+++.+ .|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~----~~~~~~~~~~~~~i---~~~~~l 71 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGK----DYYFVTREMMQRDI---AAGDFI 71 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTT----TBEECCHHHHHHHH---HHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCc----eEEEccHHHHHHHH---HcCCCE
Confidence 35789999999999999999999875 66776 3554 33334445555443 454443
No 114
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.2e-13 Score=103.30 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=63.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccc-cccc----ccc---CC-h
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDY-SLVN----FST---LD-I 73 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~-~l~~----~~~---~~-~ 73 (143)
.+++|+||||||||||+++|++...+ +.|.++|. ++......+..+.++++||.. ...+ +.. .. .
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~----~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~ 118 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGP----ELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR 118 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT----TTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH----HHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcc
Confidence 35899999999999999999998866 78888885 333333344556788888874 1111 000 00 0
Q ss_pred -hhH------HHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcc
Q 032336 74 -QDK------ESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWD 115 (143)
Q Consensus 74 -~~~------~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~l 115 (143)
... ....+.+.. +||||+|++.+++|++..|++|
T Consensus 119 r~~~~~~~~~~~~~~~l~~--------Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 119 RSDRETGASVRVVNQLLTE--------MDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp --------CTTHHHHHHHH--------HHTCCSTTCEEEEEEESCGGGS
T ss_pred cCCCcchHHHHHHHHHHHh--------hhcccccCCEEEEeecCChhhC
Confidence 000 011122222 4699999999999999999865
No 115
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=5.4e-13 Score=102.53 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=49.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVN 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~ 67 (143)
++.++|+||||||||||+++|+|++.|++|+|.+.+.+.............++++++++|++.++.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 467999999999999999999999999999999988643211000011224567999999987663
No 116
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.28 E-value=9.7e-14 Score=105.79 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=67.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc--------ccCCceEEEcceeehhhhccc------------cHHHHHhhcchh---
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL--------SLIGSNICCSNVFYLQAVHNS------------ACRKLTKELCDV--- 59 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~~~~------------~~~~~~~~ig~V--- 59 (143)
..++|+|+||||||||++.|.|+. .|+.|+|.++|..+.. .... ....+++.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~-~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD-RATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT-TSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC-CCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 568999999999999999999987 7899999999964421 1000 012455668877
Q ss_pred ccccccccc------ccCC-hhhH-HHH---HHHHHH---------hhhh---CCC-cCCchhHHHHHHHHHHhhcCCcc
Q 032336 60 IEDYSLVNF------STLD-IQDK-ESV---AKLVKL---------IDKS---NGY-IFAGMDASAVEFSKIAVRNVDWD 115 (143)
Q Consensus 60 ~Q~~~l~~~------~~~~-~~~~-~~~---~~~l~~---------l~~~---~~~-~lSgGe~qrv~ia~al~~~p~~l 115 (143)
+|+..+++. .... .... ... .+.-.. ++.. ... .+|+||+||+..+++++.+|+++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence 676553211 1111 1110 010 010011 1110 111 25899999998888888888866
No 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.27 E-value=5.2e-12 Score=95.95 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=63.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
...++|+|||||||||+++.|++.+.+.+|+|.+.+. +.... +. .+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~----D~~r~---------~a-----------------~eqL~~ 153 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA----DTFRA---------AA-----------------IEQLKI 153 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE----CTTCH---------HH-----------------HHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc----ccccH---------HH-----------------HHHHHH
Confidence 3578999999999999999999999999999988764 21110 00 011223
Q ss_pred HHHHhhhhCCCcCCchhHHHH---HHHHHHhhcCCcccccCC
Q 032336 82 LVKLIDKSNGYIFAGMDASAV---EFSKIAVRNVDWDYYRYP 120 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe~qrv---~ia~al~~~p~~llld~~ 120 (143)
+++.+++......++++.+++ ++++++..+++++++|.|
T Consensus 154 ~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 154 WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 344444432223478899998 889999999999999954
No 118
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.27 E-value=1.5e-12 Score=104.41 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=46.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHH--HHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRK--LTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~--~~~~ig~V~Q~~~l~ 66 (143)
+..++|+||||||||||+++|+|++++++|+|.+.+.+..........+. .++.++|++|+..++
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46789999999999999999999999999999997642211000001122 356799999987643
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.27 E-value=2.4e-13 Score=98.74 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=43.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
+..++|+||||||||||+++|+|+++| ..|.|.+.+. +... ..+..++|+||++.+|
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr----~~~~----~e~~gi~y~fq~~~~f 74 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR----QPRP----GEVHGEHYFFVNHDEF 74 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS----CCCT----TCCBTTTBEECCHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC----CCCc----ccccCceEEECCHHHH
Confidence 357899999999999999999999986 6888887664 1111 1235689999987654
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=4.7e-13 Score=105.61 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccc----cCChh----
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFS----TLDIQ---- 74 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~----~~~~~---- 74 (143)
+.++|+||||||||||+++|+|...+..|. ++.. .... .......+++++|+..++... +..-.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~----~~~~-~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~ 103 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEY---PGPS----HRIK-KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 103 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC----------CCEEEEEECC------CEEEEEEECC-------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCC---CCcc----cCCc-cceeeeeEEEEEecCCcccceeeeechhhhhhcc
Confidence 568999999999999999999998765551 2210 0000 000123478888876643211 11100
Q ss_pred hHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCC---cccccCCcccc
Q 032336 75 DKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVD---WDYYRYPSFHL 124 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~---~llld~~~~~~ 124 (143)
.......+.+.++. .++.+.+||++|||+++.+|+ ++++| ||+
T Consensus 104 ~~~~~~~i~~~i~~----~~~~~l~qr~~IaRal~~d~~~~vlL~ld---ePt 149 (418)
T 2qag_C 104 NSNCWQPVIDYIDS----KFEDYLNAESRVNRRQMPDNRVQCCLYFI---APS 149 (418)
T ss_dssp ----CHHHHHHHHH----HHHHHTTTSCC-CCCCCCCC-CCEEEEEC---CC-
T ss_pred chhhHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCCeeEEEEEe---cCc
Confidence 00011112221110 112456789999999999999 89999 666
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.22 E-value=2.4e-12 Score=90.71 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=32.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc-----------CCceEEEccee
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL-----------IGSNICCSNVF 39 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~-----------~~G~i~~~g~~ 39 (143)
+.++|+|+||||||||++.++|...+ ..|+|.++|..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 67999999999999999999998765 57888888853
No 122
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.20 E-value=5.7e-13 Score=100.52 Aligned_cols=118 Identities=12% Similarity=0.011 Sum_probs=67.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccC-----CceE-EEcceeehhhhccccHHHHHhhcchhccccccccc-ccCChh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLI-----GSNI-CCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF-STLDIQ 74 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~-----~G~i-~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~-~~~~~~ 74 (143)
++.++|.||+|||||||++.|.+++.+. ...+ ..++. -.+. ..+..+.+-..+..++.. ......
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f-------~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~ 102 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF-------YLTH-EDQLKLNEQFKNNKLLQGRGLPGTH 102 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG-------BCCH-HHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc-------cCCh-HHHHHHhccccccchhhhccCcchh
Confidence 4679999999999999999999999764 1223 32321 0111 122233321111111111 112223
Q ss_pred hHHHHHHHHHHhhhh-----------CCC--cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 75 DKESVAKLVKLIDKS-----------NGY--IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 75 ~~~~~~~~l~~l~~~-----------~~~--~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
+.+.+.+.++.+... ..+ .+||||+||+.+|++.+.+|+++++| ++++.++..
T Consensus 103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlE---G~~~~ld~~ 168 (290)
T 1odf_A 103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILE---GWFLGFNPI 168 (290)
T ss_dssp CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEE---ESSTTCCCC
T ss_pred HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEe---CccccCCcc
Confidence 344555666655321 111 25899999998873333389999999 777766653
No 123
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.19 E-value=1.9e-13 Score=99.83 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=36.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhcc----ccHHHHHhhcchhccc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHN----SACRKLTKELCDVIED 62 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~~~~~ig~V~Q~ 62 (143)
++|+|||||||||||++|+|++.|++|+|.++|..+...... .....++..++|++|+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 578999999999999999999999999999998643110000 0001124568899975
No 124
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.19 E-value=4.3e-12 Score=109.40 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=57.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcc-hhcccccccc-----cccCChhh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELC-DVIEDYSLVN-----FSTLDIQD 75 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~V~Q~~~l~~-----~~~~~~~~ 75 (143)
+..++|+||||||||||||++ |++.+ + .++| ||||+..-+. +..+...+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------------~-aqiG~~Vpq~~~~l~v~d~I~~rig~~d 843 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------------M-AQMGCYVPAEVCRLTPIDRVFTRLGASD 843 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH-----------------------H-HTTTCCEESSEEEECCCSBEEEECC---
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH-----------------------H-hheeEEeccCcCCCCHHHHHHHHcCCHH
Confidence 357899999999999999999 88753 1 2355 8888753110 01111111
Q ss_pred HHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhh
Q 032336 76 KESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAE 130 (143)
Q Consensus 76 ~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~ 130 (143)
.+.. ...-+++ +.+++++|++++.+|+++|+| ||++.++..
T Consensus 844 --~~~~--------~~stf~~-em~~~a~al~la~~~sLlLLD---Ep~~Gtd~~ 884 (1022)
T 2o8b_B 844 --RIMS--------GESTFFV-ELSETASILMHATAHSLVLVD---ELGRGTATF 884 (1022)
T ss_dssp ----------------CHHHH-HHHHHHHHHHHCCTTCEEEEE---CTTTTSCHH
T ss_pred --HHhh--------chhhhHH-HHHHHHHHHHhCCCCcEEEEE---CCCCCCChH
Confidence 0000 0011233 555699999999999999999 998777644
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.19 E-value=1.7e-12 Score=92.03 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=39.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
+..++|+||||||||||+++|+|+++ .+.+.+.... .......+..++|+||++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTT----RPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEEC----SCCCTTCCBTTTBEECCHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceecc----CCCchhHhcCceEEeccHHHH
Confidence 45789999999999999999999863 5666664322 111112245688999887654
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.19 E-value=5.5e-13 Score=99.36 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=61.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-cccccc---------C--
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFST---------L-- 71 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~~---------~-- 71 (143)
++.|+||||||||||+++|++... .|.|.+++. ++........++.++++||... ..+... .
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH----HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH----HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence 589999999999999999999875 788888774 2222212233455777777642 111000 0
Q ss_pred -------ChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336 72 -------DIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW 114 (143)
Q Consensus 72 -------~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~ 114 (143)
..+....+.+++.. +||||+|++.+++|++..|++
T Consensus 149 ~~~~~~~~~~~~~~~~~ll~~--------lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 149 GSGVGGGNDEREQTLNQLLVE--------MDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp -------CHHHHHHHHHHHHH--------HTTCCTTCCEEEEEEESCTTS
T ss_pred ccccCCcchHHHHHHHHHHHH--------HhCCCCCCCEEEEEecCCchh
Confidence 01112223333333 368899999999999999876
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.18 E-value=1e-11 Score=94.13 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=43.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEE---cceeehhhhccccHHHHHhhcchhccccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
++.++|+||||||||||+++|+|++. |++|+|.+ +|.. . . ...++.++++ |...++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~----~---~-~~~~~~~~~v-q~~~~~ 140 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL----H---P-NQVLKERGLM-KKKGFP 140 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB----C---C-HHHHHHHTCT-TCTTSG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc----C---c-HHHHHhCCEe-ecCCCC
Confidence 36799999999999999999999998 99999998 7642 1 1 1234568888 766543
No 128
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.18 E-value=1e-12 Score=96.46 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=61.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc-ccccc----------c--
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS-LVNFS----------T-- 70 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~-l~~~~----------~-- 70 (143)
++.|+||||||||||+++|++... .|.+.+++. ++........++.+++++|... ..+.. .
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH----HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH----HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence 589999999999999999999874 788888774 2222222233455677777642 11100 0
Q ss_pred ------CChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336 71 ------LDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW 114 (143)
Q Consensus 71 ------~~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~ 114 (143)
...+....+.+++..+ +|||+|++.+++|++..|++
T Consensus 125 ~~~~~~~~~~~~~~~~~ll~~l--------~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 125 GSGVGGGNDEREQTLNQLLVEM--------DGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp -------CHHHHHHHHHHHHHH--------HTCCTTCCEEEEEEESCGGG
T ss_pred CccccccchHHHHHHHHHHHHH--------hCCCCCCCEEEEEccCCchh
Confidence 0111122334444443 48899999999999998875
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=5.3e-12 Score=101.09 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=34.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEccee
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVF 39 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~ 39 (143)
..++|+|||||||||||++|+|+++|++|+|.++|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 3689999999999999999999999999999999963
No 130
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.16 E-value=3.6e-11 Score=89.58 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=55.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC----------CceE-EEcceeehhhhccccHHHHH---hhcchhccccccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI----------GSNI-CCSNVFYLQAVHNSACRKLT---KELCDVIEDYSLVNF 68 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~----------~G~i-~~~g~~~~~~~~~~~~~~~~---~~ig~V~Q~~~l~~~ 68 (143)
..++|+||||||||||++.+++..... .|.+ ++... .....+. ..+++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e--------~~~~~~~~r~~~~g~~~-------- 94 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE--------DPPTAIHHRLHALGAHL-------- 94 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS--------SCHHHHHHHHHHHHTTS--------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC--------CCHHHHHHHHHHHHhhc--------
Confidence 568999999999999999999865421 2222 22221 0111111 1111100
Q ss_pred ccCChhhHHHHHHHHHHhhhh---C--CCcCCchhHHHHHHHHHHhhcCCcccccCCccccc
Q 032336 69 STLDIQDKESVAKLVKLIDKS---N--GYIFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF 125 (143)
Q Consensus 69 ~~~~~~~~~~~~~~l~~l~~~---~--~~~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~ 125 (143)
. .....++++.+.+. + ...+|+|+.|+ +++++.+|+++++| ||++
T Consensus 95 ---~---~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~---i~~l~~~~~livlD---e~~~ 144 (279)
T 1nlf_A 95 ---S---AEERQAVADGLLIQPLIGSLPNIMAPEWFDG---LKRAAEGRRLMVLD---TLRR 144 (279)
T ss_dssp ---C---HHHHHHHHHHEEECCCTTSCCCTTSHHHHHH---HHHHHTTCSEEEEE---CGGG
T ss_pred ---C---hhhhhhccCceEEeecCCCCcccCCHHHHHH---HHHhcCCCCEEEEC---CHHH
Confidence 0 12234455665542 2 23368888776 46888899999999 6776
No 131
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.14 E-value=7e-12 Score=92.48 Aligned_cols=58 Identities=24% Similarity=0.219 Sum_probs=47.5
Q ss_pred eeEEEECCCCCcHHHHHHHHh---CCcccCCceEE--------EcceeehhhhccccHHHHHhhcchhcccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNIC--------CSNVFYLQAVHNSACRKLTKELCDVIEDY 63 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i~--------~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~ 63 (143)
..++|+|||||||||++++|+ |+..+++|.++ .+|..+. .......+++.+++++|..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS---TEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS---SSTTHHHHHHTCCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc---cHHHHHHHHHcCCEEEecC
Confidence 579999999999999999999 99999999998 7775221 2334567888899999764
No 132
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.14 E-value=9.7e-12 Score=106.27 Aligned_cols=36 Identities=8% Similarity=-0.192 Sum_probs=30.2
Q ss_pred CCchhHHHHHHHHHH--hhcCCcccccCCccccchhhhhhh
Q 032336 94 FAGMDASAVEFSKIA--VRNVDWDYYRYPSFHLFQSLAEVQ 132 (143)
Q Consensus 94 lSgGe~qrv~ia~al--~~~p~~llld~~~~~~~~~~~~~~ 132 (143)
.|+++++++.+|+++ +.+|+++|+| ||++.++....
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLD---Ep~~GlD~~~~ 759 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIID---ELGRGTSTYDG 759 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEE---SCSCSSCHHHH
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEe---CCCCCCCHHHH
Confidence 477888888888888 8999999999 99999887543
No 133
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.13 E-value=2.7e-12 Score=109.43 Aligned_cols=36 Identities=6% Similarity=-0.188 Sum_probs=31.0
Q ss_pred CCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
+|+|++|++.++++ +.+|+++|+| ||++.++.....
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLD---EP~~GlD~~~~~ 771 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILD---ELGRGTSTHDGI 771 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEE---STTTTSCHHHHH
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEe---CCCCCCCHHHHH
Confidence 46889999999988 8999999999 999999876443
No 134
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.10 E-value=5.7e-11 Score=83.86 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=30.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc-----c------CCceEEEccee
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS-----L------IGSNICCSNVF 39 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~-----~------~~G~i~~~g~~ 39 (143)
+.++|+|+||||||||++.++|... | ..|+|.++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 6799999999999999999999742 3 35788888853
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=7.6e-11 Score=89.99 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=53.9
Q ss_pred EEEECCCCCcHHHHHHHHhC-CcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccccc-CChhhHHHHHHH
Q 032336 5 QVVIGPPGSGKTTYCNGMSQ-FLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFST-LDIQDKESVAKL 82 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~-~~~~~~~~~~~~ 82 (143)
+.|.||||+||||+++++++ ++.|+.|.+.++|.. .... ...+..+++++|...+..... ....+...+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ----FVTA--SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQEL 112 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------CCEECSSEEEECCC----CCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee----eccc--ccccceeeeecccceEEecHhhcCCcchHHHHHH
Confidence 78999999999999999999 789999999998852 2111 112456888888765421110 011111124444
Q ss_pred HHHhhhhCCC----cCCchhHHHHHHHHHHhhcCCcccccCCccccchhhhhhhh
Q 032336 83 VKLIDKSNGY----IFAGMDASAVEFSKIAVRNVDWDYYRYPSFHLFQSLAEVQE 133 (143)
Q Consensus 83 l~~l~~~~~~----~lSgGe~qrv~ia~al~~~p~~llld~~~~~~~~~~~~~~~ 133 (143)
++.+...... .+|| +..+|+++++| ||++ ++...+.
T Consensus 113 i~~~~~~~~~~~~~~ls~-----------l~~~~~vlilD---E~~~-L~~~~~~ 152 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDG-----------LAHRYKCVIIN---EANS-LTKDAQA 152 (354)
T ss_dssp HHHHTTTTC-----------------------CCEEEEEE---CTTS-SCHHHHH
T ss_pred HHHHHHhccccccccccc-----------cCCCCeEEEEe---Cccc-cCHHHHH
Confidence 4433211000 0123 67899999999 7777 6665554
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.04 E-value=2.3e-10 Score=82.70 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=39.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC--Cccc-----CCceEEEcceeehhhhccccHHHHHhhcchhcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ--FLSL-----IGSNICCSNVFYLQAVHNSACRKLTKELCDVIE 61 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g--~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q 61 (143)
+..++|+||||||||||++.|++ ..+| ..|.+++++.. .........+.+.+++.+|
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---TFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---CCCHHHHHHHHHHTTCCHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---CcCHHHHHHHHHHcCCCHH
Confidence 35689999999999999999999 5655 57788887741 0111223344556777664
No 137
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=9.6e-11 Score=82.39 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=23.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..++|+||||||||||+++|+|+++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999987
No 138
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=1.2e-11 Score=94.07 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=32.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE---cceeehhhhccccHHHHHhhcchhccccccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC---SNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF 68 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~ 68 (143)
..++|+||||||||||+++|+|+.+|..|+|.+ .|+.. .... ...+..+++++|.+.+..+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t----t~~~-~~~~~~~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT----TRHV-ELIHTSGGLVADTPGFSSL 237 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-----------------------CCCC-CEEEETTEEEESSCSCSSC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc----ccHH-HHhhcCCEEEecCCCcccc
Confidence 468999999999999999999999999999998 66422 1111 0011127899999886543
No 139
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.03 E-value=1.5e-10 Score=81.29 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=31.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
|+..++|+||||||||||+++|++ +.+|.+++++.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d 35 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGD 35 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEccc
Confidence 778899999999999999999986 67899988873
No 140
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.01 E-value=6.4e-11 Score=100.99 Aligned_cols=111 Identities=7% Similarity=-0.015 Sum_probs=70.9
Q ss_pred HHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCC----hhhHHHHHHHHHHhhhh---
Q 032336 17 TYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLD----IQDKESVAKLVKLIDKS--- 89 (143)
Q Consensus 17 TLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~----~~~~~~~~~~l~~l~~~--- 89 (143)
|...|..+.++|..++|.++|+.+. ++...+ +...++++.+ ..+-...... ........+.|..+++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~-~~~~~~---v~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIH-EFTELS---ISEELEFLKN-LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHH-HHHHSB---HHHHHHHHHS-CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred cchhcccccCChHhcCcEECCccHH-HhhhCC---HHHHHHHHHh-ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 4456777888999999999997543 222222 3344555332 2211000000 01122334556666653
Q ss_pred -CCCc--CCchhHHHHHHHHHHhhcCC--cccccCCccccchhhhhhhhhc
Q 032336 90 -NGYI--FAGMDASAVEFSKIAVRNVD--WDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 90 -~~~~--lSgGe~qrv~ia~al~~~p~--~llld~~~~~~~~~~~~~~~~~ 135 (143)
++.+ +||||+|||+|||||+++|+ +|+|| ||++.|+...++++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLD---EPT~gLD~~~~~~l 505 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLD---EPTIGLHPRDTERL 505 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEE---CTTTTCCGGGHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEE---CCccCCCHHHHHHH
Confidence 3333 79999999999999999887 99999 99999998877644
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.01 E-value=1.9e-10 Score=81.68 Aligned_cols=54 Identities=26% Similarity=0.182 Sum_probs=39.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l 65 (143)
..++|+||||||||||+++|++.+ |.+.+++. ++.. .....+..+++++|+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d----~~~~-~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD----AFHS-PENIATMQRGIPLTDEDR 83 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG----GGSC-HHHHHHHHTTCCCCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc----cccc-HHHHHHHhcCCCCCCccc
Confidence 578999999999999999999976 88988874 2221 111223357888887554
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.01 E-value=3.9e-10 Score=80.39 Aligned_cols=98 Identities=14% Similarity=-0.045 Sum_probs=56.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccccccccCChhhHHHHHH
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNFSTLDIQDKESVAK 81 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~~~~~~~~~~~~~~ 81 (143)
+..++|+||||||||||++.+++ .+..+.++++.. ...+..++.+.. +... ... ++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~------~~~~~~~~~~~~----~~~~------~~~------~~ 75 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE------GGFSPERLVQMA----ETRG------LNP------EE 75 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS------CCCCHHHHHHHH----HTTT------CCH------HH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC------CCCCHHHHHHHH----HhcC------CCh------HH
Confidence 35689999999999999999999 444455555542 111222222211 1111 011 11
Q ss_pred HHHHhhhhCCCcCCchh--HHHHHHHHHHhhc-CCcccccCCccccchhhh
Q 032336 82 LVKLIDKSNGYIFAGMD--ASAVEFSKIAVRN-VDWDYYRYPSFHLFQSLA 129 (143)
Q Consensus 82 ~l~~l~~~~~~~lSgGe--~qrv~ia~al~~~-p~~llld~~~~~~~~~~~ 129 (143)
+++.+.+. ..++++ +++++.+++++.+ |+++++| ||++.++.
T Consensus 76 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~lliiD---~~~~~l~~ 120 (220)
T 2cvh_A 76 ALSRFILF---TPSDFKEQRRVIGSLKKTVDSNFALVVVD---SITAHYRA 120 (220)
T ss_dssp HHHHEEEE---CCTTTSHHHHHHHHHHHHCCTTEEEEEEE---CCCCCTTG
T ss_pred HhhcEEEE---ecCCHHHHHHHHHHHHHHhhcCCCEEEEc---CcHHHhhh
Confidence 22222111 123343 4678888888875 9999999 77776654
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.94 E-value=1.4e-11 Score=97.10 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=23.0
Q ss_pred CCchhHHHHHHHHHHhhcCCccccc
Q 032336 94 FAGMDASAVEFSKIAVRNVDWDYYR 118 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p~~llld 118 (143)
+|+|++|++.++++|+..|.++++-
T Consensus 253 ls~g~~el~~la~aL~~~P~ILVlN 277 (416)
T 1udx_A 253 LETLRKEVGAYDPALLRRPSLVALN 277 (416)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHHhHHhhcCCEEEEEE
Confidence 5789999999999999999999984
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=4.5e-10 Score=90.63 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=34.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+||||||||||+++|+|+++|+.|.|.++|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 3568999999999999999999999999999999885
No 145
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.91 E-value=5.2e-10 Score=81.18 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=40.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhh--ccccHHH----HHhhcchhcccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAV--HNSACRK----LTKELCDVIEDYSL 65 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~----~~~~ig~V~Q~~~l 65 (143)
+..++|.|+|||||||++++|+++ .|+|.+.+....... ....... .++.+++++|...+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l 85 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVT 85 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHH
Confidence 457899999999999999999997 788988875221100 0112221 13567888887554
No 146
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.89 E-value=1.2e-10 Score=83.62 Aligned_cols=58 Identities=28% Similarity=0.292 Sum_probs=43.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc---ccCCceEEE--------cceeehhhhc-cccHHHHHhhcchhcccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL---SLIGSNICC--------SNVFYLQAVH-NSACRKLTKELCDVIEDY 63 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~---~~~~G~i~~--------~g~~~~~~~~-~~~~~~~~~~ig~V~Q~~ 63 (143)
...++|+|||||||||++++|++.+ .++.|++.. .|. ++. ......+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHV----DVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTC----CTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCC----CccCHHHHHHHHHhCceeeecc
Confidence 3579999999999999999998766 778888875 343 221 233456777899998864
No 147
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.88 E-value=1e-09 Score=92.99 Aligned_cols=119 Identities=8% Similarity=-0.091 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHhCC---------cccCCceEEEcceeehhhhccccHHHHHhhcchhccccccccc--ccCCh-------
Q 032336 12 GSGKTTYCNGMSQF---------LSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLVNF--STLDI------- 73 (143)
Q Consensus 12 GaGKSTLl~~l~g~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~~~--~~~~~------- 73 (143)
-.||+|+.+.+... +.+..|+|.++|+.+. ++...+..++...+.-++|++..... .....
T Consensus 272 ~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~-~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 350 (842)
T 2vf7_A 272 ASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDIT-ELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ 350 (842)
T ss_dssp HHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHH-HHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred HHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHH-HHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence 35789988877663 3456788999997543 33345555554444444543321100 00111
Q ss_pred ----hhHHHHHHHHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336 74 ----QDKESVAKLVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 74 ----~~~~~~~~~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+...+++ .+..+++. ++.. +||||+|||+||++|+.+| .+++|| ||++.|+....++.
T Consensus 351 ~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILD---EPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 351 RMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLD---EPSAGLHPADTEAL 420 (842)
T ss_dssp HHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEE---CTTTTCCGGGHHHH
T ss_pred HHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEee---CccccCCHHHHHHH
Confidence 1112222 35555553 3333 7999999999999999999 599999 99999988776643
No 148
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.9e-10 Score=90.88 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=31.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
.++|+||||||||||+++|+|+. ++|.. +........++.++|++|+..++
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~--------l~g~~----~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK--------FEGEP----ATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC--------C-----------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEEECCCCCCHHHHHHHHhCcc--------ccCCc----CCCCCccceEeeEEEEeecCccc
Confidence 39999999999999999999984 22221 11000111234689999987654
No 149
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.87 E-value=5.1e-10 Score=94.48 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+||||||||||||+|+|+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999999999999974
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.86 E-value=6.5e-10 Score=80.47 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=16.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHh-CCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMS-QFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~-g~~ 26 (143)
+..++|+||||||||||+++|+ +++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578999999999999999999 998
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.85 E-value=2.8e-09 Score=83.65 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=38.9
Q ss_pred eeeEEEECCCCCcHHHHHH--HHhCCcccCCc-----eEEEcceeehhhhccccHHHHHhhcchhcc
Q 032336 2 VFGQVVIGPPGSGKTTYCN--GMSQFLSLIGS-----NICCSNVFYLQAVHNSACRKLTKELCDVIE 61 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~--~l~g~~~~~~G-----~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q 61 (143)
+..++|+||||||||||++ ++.++.+++.| .+++++.. .......+.+++++++.+|
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---TFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---CCCHHHHHHHHHHTTCCHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---ccCHHHHHHHHHHcCCChH
Confidence 3568999999999999999 44677776444 78887741 1122233445667887766
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.82 E-value=1.1e-09 Score=76.66 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=27.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc-CCceEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL-IGSNIC 34 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~-~~G~i~ 34 (143)
+..++|+||||||||||++.|.+.+++ ..|.|.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 567899999999999999999998763 445553
No 153
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.80 E-value=8.6e-10 Score=89.72 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=53.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc-eEE-Ecceeehhhh------ccccHHHHHhhcchhccccccc-----c-
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NIC-CSNVFYLQAV------HNSACRKLTKELCDVIEDYSLV-----N- 67 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~-~~g~~~~~~~------~~~~~~~~~~~ig~V~Q~~~l~-----~- 67 (143)
+..++|+|+||||||||+++|++.+.|++| ++. ++|..+...+ .........+.+++++|+.... .
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~ 448 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICA 448 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 357899999999999999999999999886 785 7774221111 0011122345688998864311 1
Q ss_pred cccCChhhHHHHHHHHHHhh
Q 032336 68 FSTLDIQDKESVAKLVKLID 87 (143)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~l~ 87 (143)
.........+.+.++++.++
T Consensus 449 ~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 449 PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp CCCCCHHHHHHHHHHHHTTS
T ss_pred cCCccHHHHHHHHHHHHHcC
Confidence 11112344556777777665
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.79 E-value=1.4e-08 Score=76.62 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=33.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
...++|+|+||+||||+++.|++.+.+..|+|.+.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3578999999999999999999999999999998774
No 155
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.77 E-value=1.6e-09 Score=76.80 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=31.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceE--EEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI--CCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i--~~~g~ 38 (143)
+..++|+|||||||||+++.|++.+. ..|.+ +++|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d 62 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence 46789999999999999999999987 77888 77774
No 156
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.75 E-value=2.3e-09 Score=73.23 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=35.1
Q ss_pred CCchhHHHHHHH------HHHhhcCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFS------KIAVRNVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia------~al~~~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+|||++| ||++.+|+++++| ||++.+|....+.+
T Consensus 58 LSgGe~qrv~lA~~Lalaral~~~p~lllLD---EPt~~LD~~~~~~l 102 (148)
T 1f2t_B 58 LSGGERIALGLAFRLAMSLYLAGEISLLILD---EPTPYLDEERRRKL 102 (148)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEE---SCSCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHcCCCCEEEEE---CCCccCCHHHHHHH
Confidence 799999999876 8999999999999 99999999877643
No 157
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.74 E-value=3.2e-09 Score=75.44 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=32.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+|+|||||||+++.|++.+++.+|.|.+.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 3579999999999999999999999888999887653
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.73 E-value=5e-09 Score=79.98 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=29.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc--cCCceEEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS--LIGSNICC 35 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~--~~~G~i~~ 35 (143)
.+.++|+||||||||||+++|.+++. |++|.+.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 36799999999999999999999987 56777544
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.72 E-value=5.1e-09 Score=73.93 Aligned_cols=30 Identities=27% Similarity=0.152 Sum_probs=26.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS 31 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G 31 (143)
+..++|+|||||||||++++|++++.|+.|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 457899999999999999999999877655
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.70 E-value=1e-08 Score=70.81 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=28.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
+..++|+|||||||||+++.|++.+ |.+.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 3578999999999999999999865 77888763
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.69 E-value=8.8e-09 Score=73.56 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
+..++|+||||||||||++.|.+.++
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34689999999999999999998765
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=1.2e-09 Score=83.53 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=29.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc----ccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL----SLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~----~~~~G~i~~~g 37 (143)
..++|+||||+|||||+++|++.+ .+++|.+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 468999999999999999999998 67777776544
No 163
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.66 E-value=8.3e-09 Score=71.03 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.5
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
|...++|+|||||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999997643
No 164
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.65 E-value=8.7e-09 Score=71.62 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceE
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNI 33 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i 33 (143)
.++|+||||||||||+++|.+++.+..|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 578999999999999999999887776654
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.63 E-value=9.5e-09 Score=70.07 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=29.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g~ 38 (143)
..++|+||||||||||++++++.+.+ +| .+++++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence 46899999999999999999999876 57 6777663
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=2e-08 Score=78.63 Aligned_cols=36 Identities=14% Similarity=0.377 Sum_probs=32.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC------------CcccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ------------FLSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g------------~~~~~~G~i~~~g 37 (143)
...++|+|+||||||||+++|+| ...|+.|.|.+.|
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 46799999999999999999999 5678899998876
No 167
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.62 E-value=5.4e-09 Score=84.10 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=59.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccccc------ccc-----ccc--
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYS------LVN-----FST-- 70 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~------l~~-----~~~-- 70 (143)
++.|+||||+|||||+++|++... .+.+.+++. ++.........+.+..+||... +|. ...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~----~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r 139 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS----DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGG----GGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehh----HHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhh
Confidence 589999999999999999999764 678888874 3322222233445667777642 110 000
Q ss_pred ------CChhhHHHHHHHHHHhhhhCCCcCCchhHHHHHHHHHHhhcCCc
Q 032336 71 ------LDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRNVDW 114 (143)
Q Consensus 71 ------~~~~~~~~~~~~l~~l~~~~~~~lSgGe~qrv~ia~al~~~p~~ 114 (143)
...+....+.+++..++ |+++|+..++.|....|+.
T Consensus 140 ~~~~~~~~~e~~~~l~~LL~~Ld--------g~~~~~~viviAatn~p~~ 181 (499)
T 2dhr_A 140 GSGVGGGNDEREQTLNQLLVEMD--------GFEKDTAIVVMAATNRPDI 181 (499)
T ss_dssp SSSTTTSSHHHHHHHHHHHHHGG--------GCCSSCCCEEEECCSCGGG
T ss_pred ccCcCCCcHHHHHHHHHHHHHhc--------ccccCccEEEEEecCChhh
Confidence 01122234455555543 7777777777777777764
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=2.6e-08 Score=71.09 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=24.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
+..++|+||||||||||++.|++.+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 356899999999999999999999876
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.57 E-value=1e-08 Score=71.28 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~ 32 (143)
..++|+||||+|||||++++++.+.|..|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999877773
No 170
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.55 E-value=1.5e-08 Score=70.95 Aligned_cols=39 Identities=3% Similarity=-0.053 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHhhc----CCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVRN----VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~----p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+|||||||++||++++.. |+++++| ||++.+|.....++
T Consensus 65 LSgGekqr~ala~~la~~~~~~~~~llLD---Ep~a~LD~~~~~~~ 107 (173)
T 3kta_B 65 MSGGEKALTALAFVFAIQKFKPAPFYLFD---EIDAHLDDANVKRV 107 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCEEEEC---CCccCCCHHHHHHH
Confidence 799999999999999865 5999999 99999998877644
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=4.2e-08 Score=74.83 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++|+||||+||||++..|++.+.+.+|+|.+.+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468999999999999999999999999999998775
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.47 E-value=9.7e-08 Score=67.58 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
|-+.++|+|||||||||+.++|+++
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHC
Confidence 4467999999999999999999983
No 173
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.46 E-value=5.9e-08 Score=74.71 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=32.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
.+.++|+|++|||||||++.|.+.+.+.+|+|.+.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 3679999999999999999999999888888876653
No 174
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.38 E-value=9.6e-08 Score=73.91 Aligned_cols=40 Identities=3% Similarity=-0.174 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHh---------hcCCcccccCCccccchhhhhhhhhcc
Q 032336 94 FAGMDASAVEFSKIAV---------RNVDWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 94 lSgGe~qrv~ia~al~---------~~p~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
+|+|||||++||++|+ .+|++||+| ||++.||...+..++
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLD---Ep~s~LD~~~~~~l~ 314 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLD---DFTAELDPHRRQYLL 314 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEEC---CGGGCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEe---CccccCCHHHHHHHH
Confidence 6999999999999999 799999999 999999998776543
No 175
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.37 E-value=1.1e-07 Score=71.67 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=30.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g 37 (143)
..++|+|||||||||+++.|++.+.+++| +|.+-+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46899999999999999999999988778 676654
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.36 E-value=1.6e-07 Score=65.06 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g 37 (143)
+..++|+|++||||||+++.|++.+++ .| .+.+++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 457899999999999999999998766 56 555555
No 177
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.35 E-value=1.9e-07 Score=72.74 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=36.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l 65 (143)
+..++|+||||||||||+++|++. .+|.+..... .. ...+..++++||.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~------~~---~~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNL------PL---DRLNFELGVAIDQFLV 220 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSS------CT---TTHHHHHGGGTTCSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEec------cc---hhHHHHHHHhcchhHH
Confidence 357899999999999999999984 4677764110 11 1123348889988753
No 178
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.34 E-value=1.5e-07 Score=74.06 Aligned_cols=39 Identities=3% Similarity=-0.124 Sum_probs=35.3
Q ss_pred CCchhHHHHHHHHHHhh----cCCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAVEFSKIAVR----NVDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~----~p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||||+++||++++. +|+++|+| ||++.||...+..+
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllD---Ep~~~LD~~~~~~l 376 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLD---EVDAALDITNVQRI 376 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEES---STTTTCCHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeC---CCcccCCHHHHHHH
Confidence 69999999999999995 79999999 99999999877644
No 179
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.33 E-value=2.9e-07 Score=78.79 Aligned_cols=52 Identities=6% Similarity=0.022 Sum_probs=41.3
Q ss_pred HHHHhhhh----CCCc--CCchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhcc
Q 032336 82 LVKLIDKS----NGYI--FAGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKYI 136 (143)
Q Consensus 82 ~l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~~ 136 (143)
.|..+++. ++.. +||||+|||+||++|+.+| ++|+|| ||++.|+....++.+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILD---EPTagLdp~~~~~L~ 546 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLI 546 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEE---CTTTTCCGGGHHHHH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEe---CcccCCCHHHHHHHH
Confidence 35555653 3333 7999999999999999985 999999 999999987766543
No 180
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.33 E-value=1.5e-07 Score=75.79 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHhhcC--CcccccCCccccchhhhhhhhhc
Q 032336 95 AGMDASAVEFSKIAVRNV--DWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 95 SgGe~qrv~ia~al~~~p--~~llld~~~~~~~~~~~~~~~~~ 135 (143)
||||+|||+||++++.+| ++|++| ||++.+|....+.+
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilD---Ep~~gld~~~~~~i 438 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFD---EVDAGIGGAAAIAV 438 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEEC---SCSSSCCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEe---CCcCCCCHHHHHHH
Confidence 999999999999999999 999999 99999999877654
No 181
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.33 E-value=5e-07 Score=71.33 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc------------cCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS------------LIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~------------~~~G~i~~~g~ 38 (143)
..++|+|+||+|||||++.|+|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 5789999999999999999999853 56788888885
No 182
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.33 E-value=5.1e-07 Score=71.63 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=63.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhh-----cchhcccccccccccCChhhH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKE-----LCDVIEDYSLVNFSTLDIQDK 76 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~-----ig~V~Q~~~l~~~~~~~~~~~ 76 (143)
..+.|.|++|+|||||+..+++...+..| .|.+.+. . .+..++..+ .++-++.. .......++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~----E---~s~~~l~~r~~~~~~~~~~~~l---~~g~l~~~~~ 273 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL----E---MSAQQLVMRMLCAEGNINAQNL---RTGKLTPEDW 273 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES----S---SCHHHHHHHHHHHHHTCCHHHH---HTSCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC----C---CCHHHHHHHHHHHHcCCCHHHH---hcCCCCHHHH
Confidence 46889999999999999999987766545 5655442 1 122222222 23322221 1122344555
Q ss_pred HHHHHHHHHhhhh-----CCCcCCchhHHHHHHHHHHh--hcCCcccccCCc
Q 032336 77 ESVAKLVKLIDKS-----NGYIFAGMDASAVEFSKIAV--RNVDWDYYRYPS 121 (143)
Q Consensus 77 ~~~~~~l~~l~~~-----~~~~lSgGe~qrv~ia~al~--~~p~~llld~~~ 121 (143)
..+.++++.+... +...+|.++.+ ..++.++ .+|+++++|+..
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 6666777666532 22224666654 4666666 689999999654
No 183
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.32 E-value=3.7e-07 Score=78.35 Aligned_cols=50 Identities=4% Similarity=-0.100 Sum_probs=40.3
Q ss_pred HHHhhhh----CCCc--CCchhHHHHHHHHHHhhc--CCcccccCCccccchhhhhhhhhc
Q 032336 83 VKLIDKS----NGYI--FAGMDASAVEFSKIAVRN--VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 83 l~~l~~~----~~~~--lSgGe~qrv~ia~al~~~--p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
|..+++. ++.. +||||+|||+||++|+.+ |++|+|| ||++.|+....++.
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILD---EPTagLdp~~~~~L 562 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLD---EPSIGLHQRDNRRL 562 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEE---CTTTTCCHHHHHHH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEe---CcccCCCHHHHHHH
Confidence 4555553 3333 799999999999999999 5899999 99999998776654
No 184
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.31 E-value=3.7e-07 Score=64.66 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+..++|+|++||||||+++.|++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999999976
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.31 E-value=1.6e-07 Score=76.22 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++|+||||+|||||+++|++.+.+..|.|.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 468899999999999999999999888888877763
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.29 E-value=2.8e-07 Score=65.01 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
..++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999998
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.29 E-value=2.1e-07 Score=66.31 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=31.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCc--eEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGS--NICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G--~i~~~g 37 (143)
+..++|+|++||||||+.+.|.+.+.|..| .+.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 456899999999999999999999987788 777765
No 188
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.28 E-value=4.2e-07 Score=62.99 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
++.++|+|++|+|||||++.+.+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999999999964
No 189
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.28 E-value=4.1e-07 Score=64.18 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=24.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
.++|+|++||||||+.+.|++.+ |.+.+++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 68999999999999999998765 4445543
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.26 E-value=3.7e-07 Score=65.74 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=32.5
Q ss_pred eeEEEECCCCCcHHHHHHHH-hCCcccCCceEEEcceeehhhhccccHHHHHhhcchhccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGM-SQFLSLIGSNICCSNVFYLQAVHNSACRKLTKELCDVIED 62 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~ 62 (143)
..+.|+||||||||||+..+ ....+...+.+++... .......+....+++.+|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----~~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----EHPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----SCHHHHHHHHHTTTCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----CCHHHHHHHHHHcCCCHHH
Confidence 46889999999999996544 5544444445555442 1112222333456776664
No 191
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.24 E-value=5.3e-07 Score=61.31 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g 24 (143)
..+|+|||||||||++.+|.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998863
No 192
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=9.4e-07 Score=60.96 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999984
No 193
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.23 E-value=7e-07 Score=69.08 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g 24 (143)
.++|+||||||||||+++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999999997
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.20 E-value=5.1e-07 Score=74.88 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=44.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc--CCceEEEcceeehhhhccccHHHHHhhcchhccccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL--IGSNICCSNVFYLQAVHNSACRKLTKELCDVIEDYSLV 66 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l~ 66 (143)
..++|+|++|+|||||++.|.+...+ ..|+| .+|. .+..+...+.++.+++.+|...++
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~----~~~d~~~~e~~~giti~~~~~~~~ 70 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT----TTTDYTPEAKLHRTTVRTGVAPLL 70 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC----CSSCCSHHHHHTTSCCSCEEEEEE
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc----ccccCCHHHHhcCCeEEecceEEe
Confidence 57899999999999999999976554 67888 5554 344455566777788888876543
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.20 E-value=6.8e-07 Score=62.23 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=28.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
...++|+|++||||||+.+.|+..+.+..+.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 356899999999999999999999887777764
No 196
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.20 E-value=1.2e-06 Score=59.69 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3679999999999999999999854
No 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.19 E-value=1.1e-06 Score=68.06 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=28.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCcc-----------cCCceEEEcce
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLS-----------LIGSNICCSNV 38 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~-----------~~~G~i~~~g~ 38 (143)
++|+|+||||||||++.|+|... +..|.|.++|.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence 89999999999999999999875 56688888874
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.19 E-value=5.5e-07 Score=68.96 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=30.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..++|+|+||+|||||++.|++.+.+.+++|.+-+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 57899999999999999999999888888876654
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.19 E-value=1e-06 Score=69.01 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=29.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC-----------cccCCceEEEcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF-----------LSLIGSNICCSN 37 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~-----------~~~~~G~i~~~g 37 (143)
...++|+|+||+||||||+.|++. ..|..|.+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 467999999999999999999998 567778777654
No 200
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.18 E-value=5.9e-07 Score=62.76 Aligned_cols=37 Identities=22% Similarity=0.105 Sum_probs=28.8
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCcccC---CceEEEcc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLI---GSNICCSN 37 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~~~---~G~i~~~g 37 (143)
|...++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 45678999999999999999999876544 25555544
No 201
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.13 E-value=1.5e-06 Score=71.23 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=30.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCC-ceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG-SNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~-G~i~~~g 37 (143)
..+.|+||||+|||||+++|++++++.. |.+.+.+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 5789999999999999999999998877 7777655
No 202
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.10 E-value=1.6e-06 Score=59.56 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999864
No 203
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.10 E-value=3.6e-06 Score=64.76 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=24.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..+.|.||||||||||+..++.......|.+.+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 468899999999999988877655444555544
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.09 E-value=1.2e-06 Score=67.61 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=40.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceE-EEcceeehhhhccccHHHHHhhcchhcccccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNI-CCSNVFYLQAVHNSACRKLTKELCDVIEDYSL 65 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~~ig~V~Q~~~l 65 (143)
..+.|.||||||||||+..++....+..|.+ ++++. .. .. ..+.+++++.+|+..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E----~s--~~-~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE----HA--LD-PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----CC--CC-HHHHHHHTCCGGGCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----cc--cc-hHHHHHcCCchhhhhh
Confidence 4688999999999999999999887777876 55442 11 11 2255678888776543
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.08 E-value=1.4e-06 Score=64.20 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=22.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+..++|+|++||||||+.++|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999998754
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.07 E-value=2.8e-06 Score=65.83 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhC-----------CcccCCceEEEcc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQ-----------FLSLIGSNICCSN 37 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g-----------~~~~~~G~i~~~g 37 (143)
|...++|+|.+|+|||||++.|++ -+.|..|.+.+.+
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 778999999999999999999998 3356667776654
No 207
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=98.07 E-value=1.7e-06 Score=67.06 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
+.++|+||+||||||+++.+.....+..+.|.+.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 56889999999999999999988878888887654
No 208
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.07 E-value=2.1e-06 Score=62.22 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=28.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
+..++|.||+||||||+++.|...+.+ .+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 457899999999999999999999887 666654
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.07 E-value=1.8e-06 Score=68.23 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=32.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++++|+|||||||++..|++.+.+..+.|.+.+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 568899999999999999999999999999988764
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.06 E-value=2e-06 Score=60.86 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|||||||||+.+.|...+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998765
No 211
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.06 E-value=1.6e-06 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
+..++|+|++||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999984
No 212
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=1.9e-06 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+||+||||||+.+.|+..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999765
No 213
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.04 E-value=2.5e-06 Score=60.74 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.9
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 032336 4 GQVVIGPPGSGKTTYCNGMS 23 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~ 23 (143)
..+|+|||||||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999875
No 214
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.03 E-value=1.3e-06 Score=63.72 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.2
Q ss_pred eeEEEECCCCCcHHHHHHHHh---CCcccCCceE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS---QFLSLIGSNI 33 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~---g~~~~~~G~i 33 (143)
..++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 468999999999999999998 5555555655
No 215
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.03 E-value=3.2e-06 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g 24 (143)
|...+.|.|++||||||+.+.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 566789999999999999999986
No 216
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.03 E-value=7.7e-07 Score=71.67 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|+|+||||||||+.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999554
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.02 E-value=4e-06 Score=60.57 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS 31 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G 31 (143)
+.++|+|++|+|||||++.|.|...+..+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 57899999999999999999997654443
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=1.7e-06 Score=65.22 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=32.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++++|+||+||||++..|++.+.+..++|.+.+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 468899999999999999999999988899987664
No 219
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.01 E-value=1.6e-06 Score=68.16 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIG 30 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~ 30 (143)
..++|+|||||||||||++|+++..+.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4689999999999999999999876644
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.00 E-value=3.5e-06 Score=57.88 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.5
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
|...+.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999998755
No 221
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.98 E-value=3.6e-06 Score=64.68 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHhC--CcccCCceEEE
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICC 35 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~ 35 (143)
.++|+|++|||||||++.|.| ++++..|.+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 689999999999999999999 66777776643
No 222
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.98 E-value=3.8e-06 Score=57.17 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 223
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.94 E-value=2.5e-06 Score=61.75 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=24.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC---CcccCCceE
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ---FLSLIGSNI 33 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g---~~~~~~G~i 33 (143)
.+.++|+|++||||||+.+.|++ +..++.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 35789999999999999999986 333455544
No 224
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.92 E-value=4.8e-06 Score=64.26 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
+.++|+|++|+|||||++.|.+...+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 67899999999999999998876433
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.92 E-value=5.4e-06 Score=58.49 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 032336 5 QVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g 24 (143)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999988753
No 226
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.92 E-value=3.1e-06 Score=65.41 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.9
Q ss_pred CCchhHHHH------HHHHHHhhc-CCcccccCCccccchhhhhhhhhc
Q 032336 94 FAGMDASAV------EFSKIAVRN-VDWDYYRYPSFHLFQSLAEVQEKY 135 (143)
Q Consensus 94 lSgGe~qrv------~ia~al~~~-p~~llld~~~~~~~~~~~~~~~~~ 135 (143)
+||||+||| ++|++++.+ |+++++| ||++.+|...+..+
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllD---Ep~~~LD~~~~~~l 326 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILD---EPTVYLDENRRAKL 326 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEE---STTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe---CCCCcCCHHHHHHH
Confidence 699999988 557888889 9999999 99999998877643
No 227
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.91 E-value=1.3e-06 Score=61.69 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLI 29 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~ 29 (143)
.++|.|++||||||+++.|...+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999998877543
No 228
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.91 E-value=6.4e-06 Score=61.96 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|++|+|||||++.|.|..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999874
No 229
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.90 E-value=9.6e-06 Score=56.85 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC--------cccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF--------LSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~--------~~~~~G~i~~~g~ 38 (143)
+.++|+|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 57899999999999999999872 2234566776663
No 230
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.90 E-value=4.5e-06 Score=61.10 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=26.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 5688999999999999999988653 34566666
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=3e-06 Score=64.42 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
+.+.||+|+||||+++++++.+.+..+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 7899999999999999999988766655433
No 232
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.89 E-value=1.6e-05 Score=55.00 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=27.2
Q ss_pred eeeEEEECCCCCcHHHHHHHH-hCC----cccCCc----eEEEcce
Q 032336 2 VFGQVVIGPPGSGKTTYCNGM-SQF----LSLIGS----NICCSNV 38 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l-~g~----~~~~~G----~i~~~g~ 38 (143)
.+.++|+|++|+|||||++.+ .+. +.|+.+ .+.++|.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 468999999999999999654 444 456656 5556663
No 233
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.89 E-value=6.2e-06 Score=60.87 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
+.++|+|++|||||||++.+.|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 6799999999999999999999753
No 234
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.89 E-value=7.8e-06 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
...++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.87 E-value=7.1e-06 Score=55.60 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.9
Q ss_pred eEEEECCCCCcHHHHHHHH
Q 032336 4 GQVVIGPPGSGKTTYCNGM 22 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l 22 (143)
.++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.86 E-value=8.1e-06 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999998743
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.86 E-value=8.2e-06 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
|...++|.|++||||||+.+.|+..+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 55679999999999999999998743
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.86 E-value=4.2e-06 Score=70.83 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=26.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|+||||||||||+++|++.+... -+.+++
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~ 271 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAF--FFLING 271 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEc
Confidence 468999999999999999999987543 355555
No 239
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.86 E-value=7.9e-06 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.86 E-value=8.4e-06 Score=56.99 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=24.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..++|.|++||||||+.+.|+.. |-..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57899999999999999999974 5555543
No 241
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.86 E-value=9.7e-06 Score=56.40 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC----c----ccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF----L----SLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~----~----~~~~G~i~~~g 37 (143)
+.++|+|++|+|||||++.+.+- + .++.+.+.+++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 57899999999999999999872 2 22345566665
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.84 E-value=6.8e-06 Score=65.03 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=31.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
..++++|||||||||++..|+..+.+..++|.+-+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 468899999999999999999999988889977553
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.83 E-value=9.7e-06 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|+||+||||||+.+.|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997543
No 244
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.81 E-value=1.1e-05 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.6
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
|-..++|.|++||||||+.+.|+..
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999764
No 245
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.81 E-value=1.2e-05 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
...+.|.|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999997643
No 246
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.79 E-value=1.2e-05 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|++||||||+.+.|+..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998744
No 247
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.79 E-value=1.1e-05 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.2
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
|...++|+|++||||||+.+.|+..
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5567999999999999999998753
No 248
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.79 E-value=1.2e-05 Score=59.03 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|+||||||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999999998643
No 249
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.78 E-value=1.5e-05 Score=59.26 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.++|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4679999999999999999999853
No 250
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.78 E-value=1.1e-05 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|++|+|||||++.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 679999999999999999998754
No 251
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.77 E-value=1.4e-05 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
|...++|.|++||||||+.+.|+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999753
No 252
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.77 E-value=1.2e-05 Score=58.68 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCceEEEcce
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSNV 38 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g~ 38 (143)
++.|+||+|+|||||++.|++..... -+.+++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 57899999999999999999876421 3555553
No 253
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.76 E-value=1.3e-05 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998764
No 254
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.76 E-value=1.9e-05 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999873
No 255
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.75 E-value=1.9e-05 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhcc
Confidence 3689999999999999999997643
No 256
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+-.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3679999999999999999998764
No 257
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.74 E-value=1.5e-05 Score=54.91 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc----ccCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL----SLIGS 31 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~----~~~~G 31 (143)
.+.++|+|++|+|||||++.+.+-. .|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 3679999999999999999998763 45666
No 258
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.74 E-value=1.7e-05 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999998764
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.9e-05 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
...++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.74 E-value=1.3e-05 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.023 Sum_probs=23.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI 29 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~ 29 (143)
..++|+|++|||||||+..|...++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 468999999999999999998876543
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.5e-05 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998764
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.72 E-value=1.7e-05 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
.++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987553
No 263
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.72 E-value=1.8e-05 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|+|++||||||+.+.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999764
No 264
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.72 E-value=2.1e-05 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 678999999999999999998753
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.71 E-value=1.9e-05 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
..+.|.|++||||||+.+.|+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999983
No 266
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.71 E-value=1.9e-05 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999888643
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.70 E-value=1.4e-05 Score=55.65 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
...++|.|++||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999997643
No 268
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.69 E-value=2.2e-05 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999987653
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.69 E-value=2.1e-05 Score=58.81 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|.|||||||||+.+.|...++ .+.+.++.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4678999999999999999976432 35555554
No 270
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.69 E-value=2.2e-05 Score=52.49 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998754
No 271
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.68 E-value=2.4e-05 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 367999999999999999988754
No 272
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.68 E-value=2.4e-05 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 273
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.68 E-value=2.3e-05 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 274
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.68 E-value=2.8e-05 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
...++|.|++||||||+.+.|+..+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999876543
No 275
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.68 E-value=2.3e-05 Score=52.61 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 578999999999999999987654
No 276
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.68 E-value=2.6e-05 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.286 Sum_probs=22.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
.+.++|+|+.|+|||||++.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 36799999999999999999988654
No 277
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.67 E-value=2.5e-05 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999888754
No 278
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.67 E-value=2.7e-05 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999764
No 279
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.67 E-value=2.4e-05 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999998754
No 280
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.67 E-value=2.4e-05 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999888764
No 281
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.67 E-value=1.7e-05 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999874
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.66 E-value=2.5e-05 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|+.||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998866
No 283
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.66 E-value=2.7e-05 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999999764
No 284
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=2.4e-05 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 367999999999999999998764
No 285
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.65 E-value=2.4e-05 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=21.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
...++|.|+.||||||+.+.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998643
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.65 E-value=2.7e-05 Score=55.17 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999643
No 287
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.65 E-value=2.8e-05 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|+.|+|||||++.+.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999998875
No 288
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.65 E-value=3.4e-05 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 367999999999999999998764
No 289
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.65 E-value=2.9e-05 Score=57.54 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=23.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
++.++|+|++|||||||++.+.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999999864
No 290
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.64 E-value=2.3e-05 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|++|+|||||++.+.+-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC
Confidence 578999999999999999998754
No 291
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.64 E-value=2.2e-05 Score=53.99 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578999999999999999998763
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.64 E-value=2.4e-05 Score=58.16 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
..+.|.||+|+||||+.+.|++.+.+..+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 46889999999999999999998877766554
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.63 E-value=2.7e-05 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999988765
No 294
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.63 E-value=2.5e-05 Score=53.98 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999875
No 295
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.63 E-value=2.9e-05 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999754
No 296
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.63 E-value=2.9e-05 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67999999999999999988764
No 297
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.62 E-value=3.5e-05 Score=57.33 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.6
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhC
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g 24 (143)
|...+.|.|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566789999999999999999985
No 298
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.62 E-value=3e-05 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999999875
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.62 E-value=3.1e-05 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999653
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.62 E-value=2.9e-05 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|++||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997543
No 301
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.61 E-value=3.3e-05 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999865
No 302
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.60 E-value=3.1e-05 Score=57.19 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.|.+-
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999988664
No 303
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.60 E-value=2.9e-05 Score=59.56 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+||+|||||++.+++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999865
No 304
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.59 E-value=3.4e-05 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999753
No 305
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.59 E-value=3.2e-05 Score=54.19 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNIC 34 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~ 34 (143)
..+.|.||+|+|||||++.++.........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 46889999999999999999987654444443
No 306
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.59 E-value=4.1e-05 Score=55.85 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|++|+|||||++.|.|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 568999999999999999998864
No 307
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.59 E-value=3.6e-05 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 67999999999999999998754
No 308
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.58 E-value=3.9e-05 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 679999999999999999987643
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.58 E-value=3.9e-05 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998644
No 310
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.58 E-value=3.9e-05 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999998754
No 311
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.58 E-value=3.2e-05 Score=59.66 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.9
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 032336 4 GQVVIGPPGSGKTTYCNGMS 23 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~ 23 (143)
..+|+|||||||||+|-.|.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999998876
No 312
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.57 E-value=3.6e-05 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999998753
No 313
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=3.9e-05 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999998754
No 314
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.57 E-value=4.7e-05 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998643
No 315
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.57 E-value=4.3e-05 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|+.||||||+.+.|+..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997643
No 316
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.57 E-value=3.6e-05 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++|+|++|+|||||++.+.+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998864
No 317
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.57 E-value=4.5e-05 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.56 E-value=4.6e-05 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|.|++||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988743
No 319
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.56 E-value=4.1e-05 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|++|+|||||++.+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 320
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.56 E-value=4.8e-05 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|.|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999864
No 321
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.56 E-value=3.9e-05 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999988754
No 322
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.55 E-value=3.6e-05 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|+||+||||||+.+.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999997543
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.55 E-value=4.7e-05 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 324
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.55 E-value=4.7e-05 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999988765
No 325
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.55 E-value=4.1e-05 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.55 E-value=4e-05 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|.|++||||||+.+.|+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999853
No 327
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.55 E-value=4.4e-05 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367899999999999999988754
No 328
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.55 E-value=5.4e-05 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3679999999999999999999854
No 329
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.54 E-value=5.7e-05 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999987653
No 330
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.54 E-value=4.6e-05 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 679999999999999999887643
No 331
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.54 E-value=5.6e-05 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=21.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 332
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.53 E-value=4.8e-05 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4679999999999999999887643
No 333
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.53 E-value=5e-05 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999988643
No 334
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.53 E-value=3.5e-05 Score=59.70 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|+|++|+|||||++.|++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 335
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=4.4e-05 Score=57.15 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=25.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|.||+|+|||||++.+++... .+-+.+++
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 3588999999999999999998653 34444443
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.53 E-value=4.2e-05 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999988754
No 337
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.53 E-value=4.7e-05 Score=52.90 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998754
No 338
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.53 E-value=4.3e-05 Score=61.62 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=29.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhC--CcccCCceEEEcce
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ--FLSLIGSNICCSNV 38 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g--~~~~~~G~i~~~g~ 38 (143)
.++.|.|++||||||++++|.. +++++.+++.+...
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~li 205 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMI 205 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 4688999999999999999876 55667788876554
No 339
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.53 E-value=5.7e-05 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998653
No 340
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.52 E-value=4.4e-05 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998754
No 341
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.52 E-value=4.4e-05 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|++|||||||++.+.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999874
No 342
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.52 E-value=5.7e-05 Score=52.55 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+-.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998854
No 343
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=4.5e-05 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6799999999999999999976
No 344
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.52 E-value=3.4e-05 Score=59.55 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..++|+||+||||||+.++|++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3589999999999999999998753
No 345
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.52 E-value=4.6e-05 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|+.||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998543
No 346
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.51 E-value=2.4e-05 Score=66.00 Aligned_cols=32 Identities=0% Similarity=-0.293 Sum_probs=27.3
Q ss_pred CCchhHHHHHHHHHHhhcCCcccccCCccccc-hhh
Q 032336 94 FAGMDASAVEFSKIAVRNVDWDYYRYPSFHLF-QSL 128 (143)
Q Consensus 94 lSgGe~qrv~ia~al~~~p~~llld~~~~~~~-~~~ 128 (143)
.+.|+.+|..+++++..+++++++| |+.. .++
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlD---Eah~R~ld 223 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILD---EAHERTLA 223 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEEC---SGGGCCHH
T ss_pred ECHHHHHHHHhhCccccCCCEEEec---Cccccccc
Confidence 4789999999999999999999999 8874 555
No 347
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.51 E-value=4.5e-05 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 67999999999999999988864
No 348
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.51 E-value=4.7e-05 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999988754
No 349
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.51 E-value=5.4e-05 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67999999999999999988754
No 350
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.50 E-value=5.6e-05 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999988743
No 351
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.50 E-value=5.6e-05 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|++|+|||||++.+.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999988864
No 352
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=6.1e-05 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999998853
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.50 E-value=5.9e-05 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 354
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.49 E-value=6.5e-05 Score=57.66 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.1
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
|...++|.||+|||||||.+.|+..+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHc
Confidence 34578999999999999999888754
No 355
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.49 E-value=6.1e-05 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67899999999999999998764
No 356
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.49 E-value=5.6e-05 Score=56.25 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999983
No 357
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=5e-05 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999987643
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.49 E-value=4.1e-05 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=15.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.|.|++||||||+.+.|+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999753
No 359
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.49 E-value=6.4e-05 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|+.|+|||||++.+.+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 36799999999999999998873
No 360
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.49 E-value=6.2e-05 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 367899999999999999998753
No 361
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.49 E-value=6.2e-05 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67999999999999999998764
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.48 E-value=6.3e-05 Score=53.53 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|+.||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999997644
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.48 E-value=5.5e-05 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3678999999999999999988753
No 364
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.48 E-value=6.8e-05 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3679999999999999999998753
No 365
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.47 E-value=5.8e-05 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999999864
No 366
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.47 E-value=6.8e-05 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999998764
No 367
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=6.1e-05 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 368
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.46 E-value=4.8e-05 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988754
No 369
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.46 E-value=3.9e-05 Score=54.07 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999988754
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=7.4e-05 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
..++|.||+||||||+.+.|+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 371
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.46 E-value=6.8e-05 Score=54.62 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|++|+|||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998753
No 372
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.46 E-value=8.2e-05 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=20.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367899999999999999988764
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.46 E-value=6.2e-05 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~ 26 (143)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997633
No 374
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.46 E-value=8.3e-05 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 375
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.46 E-value=3e-05 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|.||+||||||+.+.|...+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999988744
No 376
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.46 E-value=5.9e-05 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 377
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=7e-05 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999988754
No 378
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.45 E-value=7e-05 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|+|++|+|||||++.+.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 379
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.45 E-value=6.9e-05 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999988754
No 380
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.45 E-value=5.6e-05 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..+.|.||+|+|||||++.++....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999987654
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.45 E-value=8.2e-05 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.3
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
|...++|+||+|||||||.+.|+..+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999998754
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.45 E-value=6.5e-05 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988754
No 383
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.44 E-value=8.1e-05 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999999864
No 384
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.44 E-value=6.6e-05 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999875
No 385
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.44 E-value=7.2e-05 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67899999999999999988754
No 386
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.44 E-value=7.4e-05 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998653
No 387
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.43 E-value=5.1e-05 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=10.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999988754
No 388
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.43 E-value=3.2e-05 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998864
No 389
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.43 E-value=8.1e-05 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 367999999999999999877653
No 390
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=9.5e-05 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999863
No 391
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.42 E-value=7.2e-05 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.41 E-value=9.3e-05 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|.|+.||||||+.+.|+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 393
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.41 E-value=8.3e-05 Score=56.68 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCC--ceEEEc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIG--SNICCS 36 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~--G~i~~~ 36 (143)
.+.|.||+|+|||||++.+++.+.+.. .-++++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 688999999999999999998876652 334444
No 394
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.41 E-value=5.6e-05 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=23.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLI 29 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~ 29 (143)
..+.|.||+|+|||||++.+++...+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999877553
No 395
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.40 E-value=8.7e-05 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
-.++|+|++|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999853
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.40 E-value=7.7e-05 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988754
No 397
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.40 E-value=7.5e-05 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|.||+|+||||+++.+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999998754
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.38 E-value=9.2e-05 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..+.|.|++||||||+.+.|+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 399
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=6.8e-05 Score=56.40 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~ 32 (143)
.+.|.||+|+|||||++.++..+......
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~ 67 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYR 67 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCE
Confidence 57899999999999999999876544333
No 400
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.0001 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988754
No 401
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.34 E-value=0.00011 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
..++++|.+|+|||||++.|.|-...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 36899999999999999999987643
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.34 E-value=9.8e-05 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|+.|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887653
No 403
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 367999999999999999988654
No 404
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.34 E-value=8.1e-05 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
.+.++|+|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999998864
No 405
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.33 E-value=0.00011 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999988654
No 406
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.00013 Score=49.58 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999988765
No 407
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.32 E-value=0.00012 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++|+|+.||||||+.+.|+..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997643
No 408
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.31 E-value=0.00013 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++++|++|+|||||++.|.+-.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 409
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.30 E-value=0.00012 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999874
No 410
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.30 E-value=0.00014 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999854
No 411
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.29 E-value=0.00014 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCc
Q 032336 5 QVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.|+||+||||+|..+.|+.-+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999987543
No 412
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.29 E-value=0.00012 Score=58.61 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++.|+||+|+|||||++.+++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999854
No 413
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.29 E-value=5.7e-05 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=5.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999988765
No 414
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00014 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67899999999999999998764
No 415
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.27 E-value=0.00018 Score=51.26 Aligned_cols=27 Identities=41% Similarity=0.373 Sum_probs=23.4
Q ss_pred CeeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 1 MVFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 1 ~~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
|...++|=|+-||||||+++.|...+.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 778899999999999999999987664
No 416
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.27 E-value=0.00013 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 6789999999999999977764
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.27 E-value=0.00015 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 678999999999999998887643
No 418
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.27 E-value=0.00012 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999864
No 419
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.26 E-value=0.00019 Score=51.72 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.|+||+||||||..+.|+..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999988753
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.26 E-value=0.00017 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|+|+.||||||+.+.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998644
No 421
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.26 E-value=0.00016 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|.|++||||||+.+.|+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999764
No 422
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.00017 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.7
Q ss_pred eeEEEECCCCCcHHHHHHHHh
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS 23 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~ 23 (143)
..+.|.||+||||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 357899999999999887664
No 423
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.22 E-value=0.00022 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
++.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999997665
No 424
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.21 E-value=0.00014 Score=57.57 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..++|+|++|+|||||++.|.|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999999884
No 425
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.21 E-value=0.00017 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.++|+|+.|+|||||++.+.+-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988753
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.20 E-value=0.00024 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+||+|||||||...|+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467899999999999999887543
No 427
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.19 E-value=0.00022 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987654
No 428
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.19 E-value=0.00013 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=19.9
Q ss_pred eeeEEEECCCCCcHHHHHHH-HhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNG-MSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~-l~g 24 (143)
.+.++|+|+.|+|||||++. +.+
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999997 544
No 429
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.18 E-value=0.00016 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..+.|.||+|+|||||++.++..+.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999987653
No 430
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.16 E-value=0.00018 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+|||||++.|++.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999866
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.00023 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|.||+|+|||||++.++..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999998754
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.14 E-value=0.00025 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++.|.|+||+|||||...+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999876654
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.14 E-value=0.00025 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++.|.|+||+||||+...+.+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 35789999999999999988876
No 434
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.13 E-value=0.00031 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.||+|||||||...|+..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 457899999999999999887654
No 435
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.11 E-value=0.00029 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+||||+.+.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998744
No 436
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.11 E-value=6.1e-05 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 679999999999999999887643
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.11 E-value=0.00028 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..+.|+||+|+|||||...|+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999888764
No 438
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.10 E-value=0.0011 Score=50.68 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=25.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS 36 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~ 36 (143)
..+.|.|++|+|||||+..++.......+.|.+.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4578999999999999988876554444555443
No 439
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.10 E-value=0.00022 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
+..++|+||+|+|||||++.|++...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHh
Confidence 35689999999999999999998763
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.00027 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..+.|+|++||||||+.+.|+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998754
No 441
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.07 E-value=0.00029 Score=53.96 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||+..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999987655
No 442
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.07 E-value=0.00024 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCC
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
...++|+|++|+|||||++.|.|-
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999885
No 443
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.06 E-value=0.00038 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=22.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
+..++|-|++||||||+++.|...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999776653
No 444
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.06 E-value=0.00044 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+||+|||||||...|+..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 368999999999999999998765
No 445
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.05 E-value=0.00036 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
|++||.|.-||||||+.+.+..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999975
No 446
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.04 E-value=0.00031 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++|+|.+++|||||++.|.+-.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999998864
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.00028 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
.+.|.||+|+||||+++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988753
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.03 E-value=0.00036 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 032336 5 QVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 5 ~~liGpnGaGKSTLl~~l~g~ 25 (143)
++|+||.||||||+.+.|+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHH
Confidence 689999999999999988653
No 449
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.01 E-value=0.00047 Score=45.97 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcccCCce
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSLIGSN 32 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~~~G~ 32 (143)
.+.|.||+|+|||++.+.|........+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 47799999999999999998765443333
No 450
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.08 E-value=0.0001 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g 24 (143)
+.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 5789999999999999977764
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.99 E-value=0.00038 Score=55.16 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=26.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..+.++|++|+||||++..|+..+....-.|.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 468899999999999999998877655445544
No 452
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.99 E-value=0.00031 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.127 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..++|.|++||||||+++.|...+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999987664
No 453
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.98 E-value=0.00043 Score=48.11 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987653
No 454
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.97 E-value=0.00035 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+.+-
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 56999999999999999999874
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.97 E-value=0.00016 Score=57.06 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..++|+|++|+||||++..|++.+......|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 368899999999999999999887654445554
No 456
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.97 E-value=0.0026 Score=50.14 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=55.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCc-eEEEcceeehhhhccccHHHHHhh-cch---hcccccccccccCChhhHH
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGS-NICCSNVFYLQAVHNSACRKLTKE-LCD---VIEDYSLVNFSTLDIQDKE 77 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~-ig~---V~Q~~~l~~~~~~~~~~~~ 77 (143)
..+.|.|++|+|||||+..++.......| .|.+... ..+..++..+ ++. +..+ .+ .......++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-------E~~~~~l~~R~~~~~~~i~~~-~l-~~g~l~~~~~~ 271 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-------EMPAAQLTLRMMCSEARIDMN-RV-RLGQLTDRDFS 271 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-------SSCHHHHHHHHHHHHTTCCTT-TC-CGGGCCHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-------CCCHHHHHHHHHHHHcCCCHH-HH-hCCCCCHHHHH
Confidence 45789999999999998887765443223 3443221 1222333322 111 1111 11 11223445555
Q ss_pred HHHHHHHHhhhhCCCcC-C--chhHHHHHHHHHHh--hcCCcccccCCc
Q 032336 78 SVAKLVKLIDKSNGYIF-A--GMDASAVEFSKIAV--RNVDWDYYRYPS 121 (143)
Q Consensus 78 ~~~~~l~~l~~~~~~~l-S--gGe~qrv~ia~al~--~~p~~llld~~~ 121 (143)
.+.++++.+....-+.. . ..-.+..+.++.+. .++++++.||..
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~ 320 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQ 320 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 56666665542221211 1 11223344555555 479999999764
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.97 E-value=0.00046 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|-|+.||||||+.+.|+..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998654
No 458
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.96 E-value=0.00043 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
..++|.|++||||||+++.|...+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999876644
No 459
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.96 E-value=0.00019 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.792 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.+.|.||+|+|||||++.++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999864
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.96 E-value=0.00032 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.|+.||||||+.+.|+..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999988765
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.91 E-value=0.00062 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|.+|+|||||++.|.|-.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 358999999999999999999865
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.90 E-value=0.00052 Score=49.14 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=23.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
+..+++-|++||||||+++.|...+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999877654
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.89 E-value=0.00063 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..+.|.||+|+|||||.+.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45779999999999999999764
No 464
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.88 E-value=0.00052 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
++.|.||+|+|||+|.+.|+..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46677999999999999998765
No 465
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.86 E-value=0.00068 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|..|+|||||++.+.+-.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 466
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.86 E-value=0.00049 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|++|+|||||++.+.+-
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999886
No 467
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.85 E-value=0.00043 Score=52.95 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|..|+|||||++.|.|.-
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.82 E-value=0.00066 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++.|.||+|+|||||.+.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468899999999999999998754
No 469
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.00053 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
.+.|.||+|+|||||++.+.....
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987653
No 470
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.82 E-value=0.00082 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHh
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMS 23 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~ 23 (143)
.|+++|+|.+|+|||||++-+.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHH
Confidence 3889999999999999997664
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.81 E-value=0.00089 Score=48.35 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
..++|.|++||||||+.+.|...+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999876654
No 472
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.81 E-value=0.00051 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCccc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
.+.|.||+|+|||||.+.|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5789999999999999999987644
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.81 E-value=0.00065 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+||||+.+.++..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998877665
No 474
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.81 E-value=0.00066 Score=48.75 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=23.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
+..+++-|+.||||||+++.|...+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356889999999999999999887765
No 475
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.80 E-value=0.00079 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred eeEEEECCC---------CCcHHHHHHHHhC
Q 032336 3 FGQVVIGPP---------GSGKTTYCNGMSQ 24 (143)
Q Consensus 3 ~~~~liGpn---------GaGKSTLl~~l~g 24 (143)
+.++|+|.+ |+|||||++.+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 689999999 9999999999987
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.80 E-value=0.00071 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+||||+.+.++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 477
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.79 E-value=0.00078 Score=56.16 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.++|+|+.|+|||||++.|.|.-
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3679999999999999999999863
No 478
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.00062 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
+.++|+|+.|+|||||++.+.+-
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS
T ss_pred ceEEEECCCCccHHHHHHHHhCC
Confidence 47999999999999999988764
No 479
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.78 E-value=0.00076 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
+.++++|+.|+|||||++.|.+..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcc
Confidence 578999999999999999999853
No 480
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.77 E-value=0.00075 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|.||+|||||||...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 357899999999999998887543
No 481
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.77 E-value=0.00039 Score=55.48 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.5
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEE
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICC 35 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~ 35 (143)
..++|+||+|+|||||++.|+.......+.+.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 357899999999999999988765544455543
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.77 E-value=0.00078 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++.|.||+|+|||||.+.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999998753
No 483
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.76 E-value=0.00077 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|.||+|+||||+.+.|+..+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998765
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.75 E-value=0.00074 Score=51.26 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=25.6
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCS 36 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~ 36 (143)
..+.|.||+|+||||+.+.++..+......+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3688999999999999999998765433333333
No 485
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.73 E-value=0.00088 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.|.||+|+|||||++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999998754
No 486
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.73 E-value=0.00098 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCC
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~ 25 (143)
..+.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999888764
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.70 E-value=0.0014 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCccc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
.+.|.||+|+|||++.+.|......
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCc
Confidence 5779999999999999999877643
No 488
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.69 E-value=0.001 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|.+|+|||||++.+.+-.
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998864
No 489
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00087 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.4
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++.|.||+|+|||+|.+.+++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999854
No 490
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.68 E-value=0.00065 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQF 25 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~ 25 (143)
.++|+|.+++|||||++.+++-
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.66 E-value=0.00097 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.++.|.||+|+|||||.+.++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999999998754
No 492
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.65 E-value=0.0012 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..+.++|.+||||||+.+.|+..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999988654
No 493
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.65 E-value=0.00079 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCccc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSL 28 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~ 28 (143)
..+.|+||+|+||||+.+.|+..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999987754
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.0004 Score=58.82 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=25.0
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcccCCceEEEcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLSLIGSNICCSN 37 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~~~~G~i~~~g 37 (143)
..+.|+||||+|||||.++|++.+. .+-+.+++
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~ 544 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 544 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCC
T ss_pred ceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEec
Confidence 3577999999999999999998764 23444443
No 495
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.64 E-value=0.0011 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHh
Q 032336 3 FGQVVIGPPGSGKTTYCNGMS 23 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~ 23 (143)
..+.|+|.+||||||++|-|-
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 467899999999999999884
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.64 E-value=0.001 Score=49.96 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
.+.|.||+|+||||+++.++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999997653
No 497
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.63 E-value=0.00069 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCcc
Q 032336 4 GQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 4 ~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
.+.|.||+|+|||++.+.|.....
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 477999999999999999987654
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.63 E-value=0.0011 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
..+.|.||+|+|||+|+++|+....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999987654
No 499
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.62 E-value=0.00091 Score=54.32 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHhCCc
Q 032336 3 FGQVVIGPPGSGKTTYCNGMSQFL 26 (143)
Q Consensus 3 ~~~~liGpnGaGKSTLl~~l~g~~ 26 (143)
..++|+|..|+|||||++.|.|.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999864
No 500
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.61 E-value=0.0014 Score=47.36 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=21.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHhCCcc
Q 032336 2 VFGQVVIGPPGSGKTTYCNGMSQFLS 27 (143)
Q Consensus 2 ~~~~~liGpnGaGKSTLl~~l~g~~~ 27 (143)
...++++|..|+||||++..|+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999985544
Done!