Query 032338
Match_columns 142
No_of_seqs 161 out of 1687
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00410 U5 snRNP protein, DIM 100.0 6.2E-42 1.3E-46 244.4 15.5 141 1-142 1-142 (142)
2 KOG3414 Component of the U4/U6 100.0 1.6E-38 3.4E-43 219.0 14.8 142 1-142 1-142 (142)
3 cd02986 DLP Dim1 family, Dim1- 100.0 1.1E-35 2.4E-40 204.4 13.8 113 11-123 2-114 (114)
4 cd02954 DIM1 Dim1 family; Dim1 100.0 1.5E-33 3.3E-38 194.5 14.6 114 10-123 1-114 (114)
5 PF02966 DIM1: Mitosis protein 100.0 1.4E-32 3.1E-37 191.4 16.5 133 4-136 1-133 (133)
6 KOG0910 Thioredoxin-like prote 99.9 1.8E-27 3.9E-32 169.8 11.4 103 7-120 46-148 (150)
7 PHA02278 thioredoxin-like prot 99.9 3.1E-25 6.7E-30 150.9 12.0 81 9-91 2-86 (103)
8 cd02985 TRX_CDSP32 TRX family, 99.9 6.4E-25 1.4E-29 148.7 12.9 97 9-117 1-100 (103)
9 KOG0907 Thioredoxin [Posttrans 99.9 6.1E-25 1.3E-29 150.1 10.6 94 13-118 11-104 (106)
10 cd02948 TRX_NDPK TRX domain, T 99.9 6.8E-24 1.5E-28 143.4 12.4 98 7-118 3-101 (102)
11 cd02956 ybbN ybbN protein fami 99.9 1.4E-23 3E-28 139.4 11.5 94 13-116 2-95 (96)
12 cd03065 PDI_b_Calsequestrin_N 99.9 2.6E-23 5.7E-28 144.9 11.2 102 6-120 12-119 (120)
13 PF00085 Thioredoxin: Thioredo 99.9 1.2E-22 2.5E-27 135.3 13.2 98 10-118 5-102 (103)
14 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.5E-23 7.5E-28 143.0 10.9 81 10-90 15-97 (113)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.2E-23 9.2E-28 139.0 10.9 83 6-90 4-87 (104)
16 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 9.3E-23 2E-27 136.9 11.3 81 7-90 5-85 (101)
17 cd02963 TRX_DnaJ TRX domain, D 99.9 1.6E-22 3.4E-27 138.7 11.2 99 10-118 10-110 (111)
18 COG3118 Thioredoxin domain-con 99.9 1E-22 2.2E-27 159.1 11.0 103 10-122 29-132 (304)
19 cd02999 PDI_a_ERp44_like PDIa 99.9 1.6E-22 3.5E-27 136.5 10.3 75 14-90 9-84 (100)
20 PRK10996 thioredoxin 2; Provis 99.9 5.6E-22 1.2E-26 141.2 13.2 98 10-119 41-138 (139)
21 cd02984 TRX_PICOT TRX domain, 99.9 6.5E-22 1.4E-26 131.3 12.0 82 10-91 1-82 (97)
22 PRK09381 trxA thioredoxin; Pro 99.9 1.1E-21 2.4E-26 133.2 13.0 108 1-120 1-108 (109)
23 cd02962 TMX2 TMX2 family; comp 99.9 1E-21 2.3E-26 142.0 13.4 86 10-95 34-126 (152)
24 cd02989 Phd_like_TxnDC9 Phosdu 99.9 7.3E-22 1.6E-26 136.1 11.4 85 5-92 6-90 (113)
25 cd02965 HyaE HyaE family; HyaE 99.9 5.2E-22 1.1E-26 136.3 10.5 83 6-91 13-97 (111)
26 KOG0908 Thioredoxin-like prote 99.9 3.7E-22 8.1E-27 152.4 9.5 107 5-123 3-109 (288)
27 cd02957 Phd_like Phosducin (Ph 99.9 8.6E-22 1.9E-26 135.3 10.2 84 6-92 7-91 (113)
28 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.7E-21 3.6E-26 132.4 11.3 79 10-90 7-91 (108)
29 cd02950 TxlA TRX-like protein 99.9 4.2E-21 9.1E-26 137.2 11.4 101 11-123 10-113 (142)
30 PTZ00051 thioredoxin; Provisio 99.9 6.2E-21 1.3E-25 126.9 11.1 85 4-91 1-85 (98)
31 PTZ00443 Thioredoxin domain-co 99.9 9E-21 1.9E-25 144.8 13.4 106 10-125 36-144 (224)
32 cd02994 PDI_a_TMX PDIa family, 99.9 9E-21 2E-25 127.0 10.8 96 6-117 4-100 (101)
33 cd03002 PDI_a_MPD1_like PDI fa 99.9 8.8E-21 1.9E-25 128.3 10.8 78 10-88 6-85 (109)
34 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.1E-20 2.3E-25 126.2 10.5 80 7-90 4-86 (102)
35 cd02953 DsbDgamma DsbD gamma f 99.8 9E-21 2E-25 127.9 9.5 93 12-116 2-103 (104)
36 cd03001 PDI_a_P5 PDIa family, 99.8 2.7E-20 5.9E-25 124.4 11.7 80 10-90 6-85 (103)
37 cd02949 TRX_NTR TRX domain, no 99.8 3.8E-20 8.3E-25 123.6 11.9 94 12-116 3-96 (97)
38 TIGR01068 thioredoxin thioredo 99.8 5.8E-20 1.2E-24 121.7 12.2 99 10-119 2-100 (101)
39 cd02987 Phd_like_Phd Phosducin 99.8 2.4E-20 5.2E-25 137.7 10.9 84 6-91 65-149 (175)
40 cd02975 PfPDO_like_N Pyrococcu 99.8 4.1E-20 8.9E-25 127.3 11.4 91 22-121 21-111 (113)
41 cd03000 PDI_a_TMX3 PDIa family 99.8 7.4E-20 1.6E-24 123.6 10.9 95 11-119 6-103 (104)
42 cd02997 PDI_a_PDIR PDIa family 99.8 7.8E-20 1.7E-24 122.3 10.6 82 6-90 3-88 (104)
43 cd02952 TRP14_like Human TRX-r 99.8 7.2E-20 1.6E-24 127.4 10.1 84 7-90 5-103 (119)
44 cd02993 PDI_a_APS_reductase PD 99.8 1.2E-19 2.6E-24 123.8 11.0 85 10-94 7-95 (109)
45 cd02951 SoxW SoxW family; SoxW 99.8 1.8E-19 4E-24 125.3 11.9 104 11-126 3-125 (125)
46 TIGR01126 pdi_dom protein disu 99.8 1.6E-19 3.5E-24 120.0 10.7 97 10-118 2-100 (102)
47 TIGR01295 PedC_BrcD bacterioci 99.8 2.6E-19 5.6E-24 125.1 11.6 94 10-116 12-120 (122)
48 cd02992 PDI_a_QSOX PDIa family 99.8 5.1E-19 1.1E-23 122.0 11.5 80 10-90 7-91 (114)
49 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.9E-19 6.3E-24 119.4 9.5 81 7-89 4-87 (105)
50 TIGR00424 APS_reduc 5'-adenyly 99.8 1.1E-18 2.5E-23 145.0 12.6 106 5-119 353-462 (463)
51 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.1E-18 2.3E-23 116.6 10.0 79 7-88 4-84 (104)
52 cd02961 PDI_a_family Protein D 99.8 2.1E-18 4.5E-23 113.3 10.5 76 10-87 4-81 (101)
53 PLN02309 5'-adenylylsulfate re 99.8 3.8E-18 8.2E-23 141.8 12.8 102 10-119 351-456 (457)
54 PTZ00062 glutaredoxin; Provisi 99.8 3.6E-18 7.7E-23 128.8 11.0 73 9-91 4-76 (204)
55 KOG0190 Protein disulfide isom 99.8 1.8E-18 3.9E-23 143.8 7.9 98 10-119 31-131 (493)
56 cd02988 Phd_like_VIAF Phosduci 99.8 5.8E-18 1.3E-22 126.7 9.3 78 10-91 88-166 (192)
57 cd02947 TRX_family TRX family; 99.7 4.4E-17 9.4E-22 105.0 10.6 76 13-91 2-77 (93)
58 PTZ00102 disulphide isomerase; 99.7 2.2E-17 4.7E-22 137.0 11.2 100 11-120 364-465 (477)
59 cd02959 ERp19 Endoplasmic reti 99.7 3.5E-17 7.6E-22 113.4 9.1 71 21-91 17-91 (117)
60 PTZ00102 disulphide isomerase; 99.7 1.1E-16 2.4E-21 132.7 12.2 98 10-120 38-138 (477)
61 TIGR01130 ER_PDI_fam protein d 99.7 1.1E-16 2.4E-21 131.5 12.0 78 10-89 7-87 (462)
62 cd02982 PDI_b'_family Protein 99.7 1.2E-16 2.6E-21 106.9 9.4 87 23-119 12-102 (103)
63 TIGR02187 GlrX_arch Glutaredox 99.7 3.3E-16 7.2E-21 118.7 12.0 89 23-120 19-111 (215)
64 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.3E-16 2.9E-21 110.4 8.9 95 10-118 7-114 (116)
65 TIGR00411 redox_disulf_1 small 99.7 3.1E-16 6.7E-21 100.8 9.9 79 27-119 3-81 (82)
66 KOG0190 Protein disulfide isom 99.7 4.6E-17 9.9E-22 135.5 7.1 96 11-118 373-471 (493)
67 PRK00293 dipZ thiol:disulfide 99.7 2.7E-16 5.8E-21 134.3 11.6 104 7-119 456-569 (571)
68 PHA02125 thioredoxin-like prot 99.7 2.9E-16 6.3E-21 100.6 8.9 55 27-90 2-56 (75)
69 cd02955 SSP411 TRX domain, SSP 99.7 2.5E-15 5.4E-20 105.3 12.7 80 10-91 4-95 (124)
70 TIGR00412 redox_disulf_2 small 99.7 1E-15 2.2E-20 98.5 8.9 58 28-90 3-60 (76)
71 KOG4277 Uncharacterized conser 99.7 1.7E-16 3.6E-21 124.9 6.1 70 21-90 41-113 (468)
72 TIGR01130 ER_PDI_fam protein d 99.6 1.2E-15 2.5E-20 125.5 9.6 98 11-120 353-454 (462)
73 TIGR02740 TraF-like TraF-like 99.6 5.5E-15 1.2E-19 115.9 12.0 92 17-119 160-263 (271)
74 TIGR02187 GlrX_arch Glutaredox 99.6 7.6E-15 1.6E-19 111.2 11.4 83 22-118 132-214 (215)
75 PRK15412 thiol:disulfide inter 99.6 2E-14 4.4E-19 106.6 11.6 90 22-124 67-180 (185)
76 PRK14018 trifunctional thiored 99.6 1.7E-14 3.7E-19 121.6 11.7 101 22-132 55-192 (521)
77 PF13098 Thioredoxin_2: Thiore 99.6 4E-15 8.6E-20 101.0 6.3 86 21-116 3-112 (112)
78 cd03009 TryX_like_TryX_NRX Try 99.6 1.8E-14 3.9E-19 100.6 9.7 69 22-90 17-113 (131)
79 cd03008 TryX_like_RdCVF Trypar 99.6 1.8E-14 4E-19 103.5 9.8 71 20-90 22-126 (146)
80 cd02964 TryX_like_family Trypa 99.6 2.1E-14 4.7E-19 100.7 9.5 69 22-90 16-113 (132)
81 KOG0912 Thiol-disulfide isomer 99.6 8.6E-15 1.9E-19 115.0 8.0 96 12-118 4-104 (375)
82 cd03010 TlpA_like_DsbE TlpA-li 99.6 3.9E-14 8.4E-19 98.3 10.2 86 2-91 5-115 (127)
83 PF13905 Thioredoxin_8: Thiore 99.5 5.5E-14 1.2E-18 92.8 9.2 65 23-87 1-92 (95)
84 cd02973 TRX_GRX_like Thioredox 99.5 3.5E-14 7.6E-19 88.4 7.5 61 27-90 3-63 (67)
85 TIGR00385 dsbE periplasmic pro 99.5 1.1E-13 2.4E-18 101.5 11.1 86 22-120 62-171 (173)
86 TIGR02738 TrbB type-F conjugat 99.5 1.3E-13 2.8E-18 99.9 10.6 86 23-119 50-152 (153)
87 PLN02919 haloacid dehalogenase 99.5 2.3E-13 5.1E-18 123.0 12.0 90 22-121 419-537 (1057)
88 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 2.6E-13 5.7E-18 93.3 8.9 84 2-90 2-106 (123)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 6.2E-13 1.3E-17 88.0 9.4 66 22-90 11-76 (89)
90 COG4232 Thiol:disulfide interc 99.5 3.6E-13 7.9E-18 113.5 9.8 103 6-119 457-567 (569)
91 KOG0191 Thioredoxin/protein di 99.5 2.9E-13 6.4E-18 110.5 8.7 75 21-96 45-119 (383)
92 PRK03147 thiol-disulfide oxido 99.4 1.8E-12 3.9E-17 94.1 11.3 88 22-119 60-171 (173)
93 cd02960 AGR Anterior Gradient 99.4 3E-12 6.4E-17 90.3 11.1 97 21-119 21-122 (130)
94 cd02958 UAS UAS family; UAS is 99.4 4.2E-12 9.2E-17 87.0 11.6 90 21-120 15-111 (114)
95 cd03012 TlpA_like_DipZ_like Tl 99.4 1.9E-12 4.2E-17 90.0 9.9 73 22-94 22-123 (126)
96 cd02966 TlpA_like_family TlpA- 99.4 3.1E-12 6.8E-17 85.0 9.8 85 3-90 2-111 (116)
97 TIGR02661 MauD methylamine deh 99.4 1.5E-12 3.2E-17 97.0 9.0 88 2-90 54-160 (189)
98 PRK11509 hydrogenase-1 operon 99.4 3.8E-12 8.3E-17 89.9 10.5 100 11-122 24-126 (132)
99 PF13899 Thioredoxin_7: Thiore 99.4 2.7E-12 6E-17 83.2 8.7 70 13-85 9-81 (82)
100 cd02967 mauD Methylamine utili 99.4 5.9E-13 1.3E-17 90.4 5.7 59 23-81 21-82 (114)
101 COG0526 TrxA Thiol-disulfide i 99.3 7.8E-12 1.7E-16 82.2 7.8 68 23-90 32-102 (127)
102 PRK13728 conjugal transfer pro 99.3 1.9E-11 4.2E-16 90.6 10.4 85 27-122 73-173 (181)
103 KOG0191 Thioredoxin/protein di 99.3 1.3E-11 2.9E-16 100.8 8.4 100 11-121 151-253 (383)
104 PF08534 Redoxin: Redoxin; In 99.3 7E-11 1.5E-15 83.6 10.2 76 21-96 26-134 (146)
105 KOG1731 FAD-dependent sulfhydr 99.3 3.8E-12 8.2E-17 106.9 4.1 77 10-87 45-126 (606)
106 KOG0914 Thioredoxin-like prote 99.3 2.7E-11 5.8E-16 91.6 8.2 116 7-123 128-253 (265)
107 cd02969 PRX_like1 Peroxiredoxi 99.2 2.4E-10 5.1E-15 83.3 11.8 102 22-125 24-157 (171)
108 PTZ00056 glutathione peroxidas 99.2 2.1E-10 4.5E-15 86.3 9.7 42 22-63 38-80 (199)
109 TIGR01626 ytfJ_HI0045 conserve 99.2 1.2E-10 2.6E-15 86.6 8.2 67 22-91 58-161 (184)
110 smart00594 UAS UAS domain. 99.2 4.8E-10 1E-14 78.0 10.6 91 21-116 25-121 (122)
111 TIGR03137 AhpC peroxiredoxin. 99.1 7E-10 1.5E-14 82.5 10.7 109 22-136 30-172 (187)
112 KOG2501 Thioredoxin, nucleored 99.1 1.3E-10 2.8E-15 83.9 6.3 69 22-90 32-129 (157)
113 TIGR02200 GlrX_actino Glutared 99.1 2E-10 4.3E-15 72.6 6.2 57 27-90 2-63 (77)
114 PLN02399 phospholipid hydroper 99.1 6.6E-10 1.4E-14 85.7 10.1 43 22-64 98-141 (236)
115 cd01659 TRX_superfamily Thiore 99.1 8.3E-10 1.8E-14 64.9 7.3 60 27-87 1-63 (69)
116 PLN02412 probable glutathione 99.1 1.5E-09 3.3E-14 79.3 10.1 60 2-64 11-71 (167)
117 TIGR02180 GRX_euk Glutaredoxin 99.0 1.4E-09 2.9E-14 69.9 7.9 60 27-90 1-65 (84)
118 TIGR02196 GlrX_YruB Glutaredox 99.0 2.6E-09 5.6E-14 66.3 8.0 55 27-89 2-60 (74)
119 PF03190 Thioredox_DsbH: Prote 99.0 8.2E-09 1.8E-13 75.3 11.4 78 11-90 27-116 (163)
120 TIGR02540 gpx7 putative glutat 99.0 3.3E-09 7.2E-14 76.1 9.0 59 2-63 4-63 (153)
121 cd00340 GSH_Peroxidase Glutath 99.0 2.2E-09 4.8E-14 77.0 7.3 41 22-63 21-62 (152)
122 PF13728 TraF: F plasmid trans 99.0 1E-08 2.2E-13 78.0 11.2 90 15-116 112-214 (215)
123 PRK10382 alkyl hydroperoxide r 98.9 1.2E-08 2.7E-13 76.0 10.8 111 21-137 29-173 (187)
124 cd03015 PRX_Typ2cys Peroxiredo 98.9 2.9E-08 6.4E-13 72.5 11.5 96 22-123 28-160 (173)
125 PF13192 Thioredoxin_3: Thiore 98.9 2.2E-08 4.7E-13 64.1 9.2 73 29-117 4-76 (76)
126 COG2143 Thioredoxin-related pr 98.9 2.1E-08 4.5E-13 72.5 9.6 90 21-120 40-149 (182)
127 KOG0911 Glutaredoxin-related p 98.9 2.3E-09 5.1E-14 81.2 4.7 81 5-90 3-83 (227)
128 PF14595 Thioredoxin_9: Thiore 98.8 1.3E-08 2.7E-13 71.8 7.3 73 17-90 35-111 (129)
129 PRK00522 tpx lipid hydroperoxi 98.8 5.5E-08 1.2E-12 71.0 10.7 43 22-65 43-86 (167)
130 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 3.6E-08 7.9E-13 67.3 8.9 45 22-66 24-70 (124)
131 PF02114 Phosducin: Phosducin; 98.8 1.7E-08 3.6E-13 79.1 7.8 84 6-91 128-212 (265)
132 PRK13191 putative peroxiredoxi 98.8 8.8E-08 1.9E-12 72.9 11.6 113 22-141 32-181 (215)
133 PRK11200 grxA glutaredoxin 1; 98.8 5.3E-08 1.2E-12 63.3 8.9 61 27-90 3-69 (85)
134 PRK15000 peroxidase; Provision 98.8 1.3E-07 2.8E-12 71.1 11.9 109 22-137 33-178 (200)
135 cd03017 PRX_BCP Peroxiredoxin 98.8 6E-08 1.3E-12 67.8 9.4 70 22-91 22-124 (140)
136 cd02970 PRX_like2 Peroxiredoxi 98.8 9.3E-08 2E-12 67.2 9.9 46 23-68 24-70 (149)
137 TIGR02739 TraF type-F conjugat 98.8 1.4E-07 3.1E-12 73.5 11.5 96 16-123 143-251 (256)
138 KOG1672 ATP binding protein [P 98.8 5.1E-08 1.1E-12 72.6 8.5 82 7-91 70-151 (211)
139 cd03014 PRX_Atyp2cys Peroxired 98.8 1E-07 2.2E-12 67.1 9.8 73 22-95 25-128 (143)
140 PF06110 DUF953: Eukaryotic pr 98.7 1.2E-07 2.6E-12 66.0 9.3 81 10-90 4-102 (119)
141 PTZ00256 glutathione peroxidas 98.7 8.3E-08 1.8E-12 71.0 9.0 42 22-63 39-82 (183)
142 PRK13190 putative peroxiredoxi 98.7 2E-07 4.4E-12 70.1 11.2 108 22-136 26-169 (202)
143 cd03018 PRX_AhpE_like Peroxire 98.7 2.7E-07 5.8E-12 65.2 11.0 72 24-95 29-132 (149)
144 PHA03050 glutaredoxin; Provisi 98.7 1E-07 2.2E-12 65.2 7.0 91 13-119 5-102 (108)
145 PTZ00137 2-Cys peroxiredoxin; 98.6 7.5E-07 1.6E-11 69.7 11.9 108 22-136 97-240 (261)
146 PRK09437 bcp thioredoxin-depen 98.6 4.9E-07 1.1E-11 64.6 9.7 44 22-65 29-74 (154)
147 PRK13189 peroxiredoxin; Provis 98.6 9.6E-07 2.1E-11 67.5 11.8 110 22-138 34-180 (222)
148 PRK13599 putative peroxiredoxi 98.6 1.1E-06 2.4E-11 66.8 12.1 108 22-136 27-171 (215)
149 TIGR02189 GlrX-like_plant Glut 98.6 1.3E-07 2.8E-12 63.6 5.9 76 29-119 12-94 (99)
150 cd03016 PRX_1cys Peroxiredoxin 98.6 1.1E-06 2.4E-11 66.1 11.5 105 25-136 28-169 (203)
151 cd02968 SCO SCO (an acronym fo 98.6 2.6E-07 5.7E-12 64.7 7.3 44 22-65 21-69 (142)
152 cd03419 GRX_GRXh_1_2_like Glut 98.6 5.9E-07 1.3E-11 57.3 8.1 58 27-90 2-64 (82)
153 PRK13703 conjugal pilus assemb 98.5 1.5E-06 3.2E-11 67.6 10.3 94 17-120 137-241 (248)
154 TIGR02183 GRXA Glutaredoxin, G 98.5 1E-06 2.3E-11 57.5 8.1 61 27-90 2-68 (86)
155 cd02971 PRX_family Peroxiredox 98.5 1.2E-06 2.6E-11 61.0 8.8 44 22-65 21-66 (140)
156 KOG0913 Thiol-disulfide isomer 98.5 3.2E-08 6.8E-13 75.6 0.6 94 10-118 30-124 (248)
157 cd02976 NrdH NrdH-redoxin (Nrd 98.5 1.1E-06 2.3E-11 54.2 7.4 56 27-90 2-61 (73)
158 TIGR03143 AhpF_homolog putativ 98.5 1.5E-06 3.3E-11 74.2 10.6 78 24-116 476-554 (555)
159 PTZ00253 tryparedoxin peroxida 98.4 7.7E-06 1.7E-10 61.3 12.0 108 22-136 35-179 (199)
160 PF00462 Glutaredoxin: Glutare 98.4 5.2E-07 1.1E-11 54.8 4.6 56 27-90 1-60 (60)
161 cd02991 UAS_ETEA UAS family, E 98.4 8.5E-06 1.8E-10 56.4 10.8 87 21-120 15-113 (116)
162 cd02066 GRX_family Glutaredoxi 98.4 2.1E-06 4.6E-11 52.5 7.0 56 27-90 2-61 (72)
163 PF11009 DUF2847: Protein of u 98.4 6.2E-06 1.4E-10 56.1 9.7 86 6-91 2-92 (105)
164 KOG3425 Uncharacterized conser 98.4 3.4E-06 7.3E-11 58.4 8.2 77 10-86 11-104 (128)
165 KOG1752 Glutaredoxin and relat 98.3 5.9E-06 1.3E-10 56.2 8.3 91 12-119 5-100 (104)
166 PRK15317 alkyl hydroperoxide r 98.3 6.6E-06 1.4E-10 69.7 10.4 70 18-90 111-180 (517)
167 PRK10606 btuE putative glutath 98.3 2.2E-06 4.7E-11 63.8 6.2 59 2-64 7-66 (183)
168 PRK10824 glutaredoxin-4; Provi 98.3 4E-06 8.6E-11 58.0 7.0 90 11-119 5-103 (115)
169 TIGR02190 GlrX-dom Glutaredoxi 98.3 5.6E-06 1.2E-10 53.1 7.2 56 27-90 10-68 (79)
170 TIGR03143 AhpF_homolog putativ 98.2 1.7E-05 3.6E-10 67.9 11.3 109 11-129 354-463 (555)
171 PRK10877 protein disulfide iso 98.2 5.8E-06 1.3E-10 63.6 7.5 81 22-119 106-230 (232)
172 TIGR00365 monothiol glutaredox 98.2 4.1E-06 8.9E-11 56.1 5.8 67 12-90 3-78 (97)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 4.9E-06 1.1E-10 62.0 5.5 68 22-90 76-184 (197)
174 TIGR02181 GRX_bact Glutaredoxi 98.1 6.4E-06 1.4E-10 52.4 5.1 55 28-90 2-60 (79)
175 cd03418 GRX_GRXb_1_3_like Glut 98.1 2.9E-05 6.3E-10 48.6 7.7 56 27-90 2-62 (75)
176 cd03029 GRX_hybridPRX5 Glutare 98.0 3E-05 6.4E-10 48.6 6.8 56 27-90 3-61 (72)
177 TIGR03140 AhpF alkyl hydropero 98.0 6.6E-05 1.4E-09 63.7 10.5 70 18-90 112-181 (515)
178 cd03027 GRX_DEP Glutaredoxin ( 98.0 6E-05 1.3E-09 47.3 7.6 55 28-90 4-62 (73)
179 TIGR02194 GlrX_NrdH Glutaredox 98.0 3.6E-05 7.7E-10 48.3 6.2 53 28-88 2-57 (72)
180 cd03028 GRX_PICOT_like Glutare 97.9 3.1E-05 6.8E-10 50.9 6.0 50 33-90 21-74 (90)
181 PRK10329 glutaredoxin-like pro 97.9 0.00022 4.7E-09 46.1 9.8 55 27-89 3-60 (81)
182 PRK10638 glutaredoxin 3; Provi 97.9 1.8E-05 3.8E-10 51.1 4.5 56 27-90 4-63 (83)
183 PF01216 Calsequestrin: Calseq 97.8 0.00044 9.5E-09 56.0 11.9 98 10-120 40-144 (383)
184 cd02983 P5_C P5 family, C-term 97.8 0.00069 1.5E-08 47.6 11.5 114 5-130 4-125 (130)
185 cd02972 DsbA_family DsbA famil 97.8 9.7E-05 2.1E-09 47.3 6.7 57 27-83 1-89 (98)
186 PF13848 Thioredoxin_6: Thiore 97.8 0.0011 2.4E-08 47.9 12.5 73 11-85 84-159 (184)
187 PTZ00062 glutaredoxin; Provisi 97.8 9.7E-05 2.1E-09 55.9 6.7 51 32-90 125-179 (204)
188 cd02981 PDI_b_family Protein D 97.7 0.00058 1.3E-08 44.6 9.6 94 6-117 2-95 (97)
189 COG0695 GrxC Glutaredoxin and 97.7 0.00023 4.9E-09 46.0 6.9 56 27-90 3-64 (80)
190 COG1331 Highly conserved prote 97.7 0.00029 6.2E-09 61.3 9.2 78 11-90 33-122 (667)
191 PF05768 DUF836: Glutaredoxin- 97.7 0.00036 7.9E-09 44.9 7.6 52 27-81 2-53 (81)
192 KOG3171 Conserved phosducin-li 97.7 0.00034 7.5E-09 53.3 8.2 85 4-90 139-224 (273)
193 PRK11657 dsbG disulfide isomer 97.5 0.0012 2.6E-08 51.4 9.5 29 22-50 116-144 (251)
194 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00019 4.2E-09 49.0 4.4 78 11-91 16-96 (107)
195 cd03023 DsbA_Com1_like DsbA fa 97.4 0.00065 1.4E-08 47.5 6.0 41 22-63 4-44 (154)
196 PRK12759 bifunctional gluaredo 97.2 0.00075 1.6E-08 56.0 5.5 56 27-90 4-71 (410)
197 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.0097 2.1E-07 43.3 9.5 60 3-65 13-74 (157)
198 cd03073 PDI_b'_ERp72_ERp57 PDI 96.9 0.012 2.6E-07 40.2 8.6 63 24-86 16-86 (111)
199 cd03031 GRX_GRX_like Glutaredo 96.8 0.0015 3.3E-08 47.0 3.7 76 29-119 4-93 (147)
200 PF13462 Thioredoxin_4: Thiore 96.8 0.0067 1.5E-07 42.9 7.0 44 21-64 10-55 (162)
201 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.024 5.1E-07 38.7 9.4 90 23-122 16-110 (111)
202 cd03019 DsbA_DsbA DsbA family, 96.6 0.0037 7.9E-08 45.0 4.7 40 22-61 14-53 (178)
203 cd02974 AhpF_NTD_N Alkyl hydro 96.5 0.071 1.5E-06 35.4 9.8 87 11-119 7-93 (94)
204 KOG2603 Oligosaccharyltransfer 96.4 0.019 4.1E-07 46.0 7.8 76 11-86 47-135 (331)
205 KOG3170 Conserved phosducin-li 96.4 0.032 6.9E-07 42.3 8.3 78 7-88 95-172 (240)
206 PRK15317 alkyl hydroperoxide r 96.2 0.069 1.5E-06 45.4 10.6 97 11-129 7-103 (517)
207 PF07912 ERp29_N: ERp29, N-ter 96.2 0.093 2E-06 36.7 9.3 97 11-118 11-117 (126)
208 TIGR03140 AhpF alkyl hydropero 95.9 0.14 3E-06 43.5 11.0 98 11-129 7-104 (515)
209 PRK10954 periplasmic protein d 95.8 0.013 2.8E-07 44.1 4.1 40 23-62 37-79 (207)
210 cd03013 PRX5_like Peroxiredoxi 95.5 0.031 6.7E-07 40.2 4.8 52 24-75 31-88 (155)
211 PF13848 Thioredoxin_6: Thiore 95.5 0.16 3.5E-06 36.4 8.6 67 41-119 8-74 (184)
212 cd03067 PDI_b_PDIR_N PDIb fami 95.5 0.13 2.8E-06 34.9 7.3 82 4-88 2-90 (112)
213 cd02978 KaiB_like KaiB-like fa 95.2 0.11 2.3E-06 33.0 6.0 56 27-82 4-60 (72)
214 cd03066 PDI_b_Calsequestrin_mi 95.2 0.35 7.5E-06 32.1 8.9 96 6-118 3-99 (102)
215 PF00837 T4_deiodinase: Iodoth 95.0 0.19 4.2E-06 38.9 8.2 39 21-59 100-138 (237)
216 cd03069 PDI_b_ERp57 PDIb famil 94.7 0.68 1.5E-05 30.8 9.4 71 5-85 2-72 (104)
217 PRK09301 circadian clock prote 94.1 0.36 7.8E-06 32.7 6.7 59 24-82 6-65 (103)
218 TIGR02654 circ_KaiB circadian 94.0 0.37 8.1E-06 31.7 6.6 58 25-82 4-62 (87)
219 COG4545 Glutaredoxin-related p 93.7 0.12 2.6E-06 33.2 3.6 58 24-90 3-76 (85)
220 PF13417 GST_N_3: Glutathione 93.5 0.69 1.5E-05 28.6 7.0 70 30-121 2-72 (75)
221 cd03060 GST_N_Omega_like GST_N 93.5 0.2 4.4E-06 30.7 4.5 57 29-90 3-60 (71)
222 cd03037 GST_N_GRX2 GST_N famil 93.0 0.41 8.9E-06 29.2 5.3 56 30-90 4-59 (71)
223 cd02977 ArsC_family Arsenate R 92.9 0.08 1.7E-06 35.3 2.2 45 28-78 2-50 (105)
224 PF07689 KaiB: KaiB domain; I 92.9 0.078 1.7E-06 34.5 1.9 52 30-81 3-55 (82)
225 cd00570 GST_N_family Glutathio 92.8 0.3 6.6E-06 28.5 4.5 56 29-90 3-60 (71)
226 cd03041 GST_N_2GST_N GST_N fam 92.5 0.76 1.6E-05 28.6 6.2 48 29-82 4-55 (77)
227 KOG2640 Thioredoxin [Function 92.1 0.03 6.4E-07 44.8 -0.9 70 16-85 69-138 (319)
228 cd03051 GST_N_GTT2_like GST_N 91.9 0.24 5.1E-06 30.0 3.3 57 29-90 3-63 (74)
229 PF06053 DUF929: Domain of unk 91.5 0.79 1.7E-05 35.8 6.4 58 21-85 56-113 (249)
230 cd03059 GST_N_SspA GST_N famil 90.9 1.5 3.2E-05 26.5 6.2 55 29-89 3-58 (73)
231 COG2761 FrnE Predicted dithiol 90.7 0.52 1.1E-05 36.3 4.6 43 67-123 174-216 (225)
232 COG3019 Predicted metal-bindin 90.4 1.4 3.1E-05 31.5 6.3 58 25-90 26-87 (149)
233 TIGR01617 arsC_related transcr 90.3 0.71 1.5E-05 31.4 4.6 33 29-67 3-35 (117)
234 PF02630 SCO1-SenC: SCO1/SenC; 90.2 1.6 3.4E-05 31.9 6.7 44 21-64 50-97 (174)
235 cd03035 ArsC_Yffb Arsenate Red 90.2 0.25 5.5E-06 33.3 2.3 33 28-66 2-34 (105)
236 PRK01655 spxA transcriptional 89.8 0.43 9.2E-06 33.4 3.3 33 28-66 3-35 (131)
237 PHA03075 glutaredoxin-like pro 89.8 0.82 1.8E-05 31.7 4.5 30 24-53 2-31 (123)
238 KOG2507 Ubiquitin regulatory p 89.0 4.9 0.00011 33.9 9.3 91 21-121 16-112 (506)
239 PF09673 TrbC_Ftype: Type-F co 89.0 1.3 2.7E-05 30.3 5.1 45 40-86 36-80 (113)
240 PF13743 Thioredoxin_5: Thiore 88.9 1 2.3E-05 32.9 5.0 34 29-62 2-35 (176)
241 cd03036 ArsC_like Arsenate Red 88.8 0.37 8E-06 32.7 2.3 51 29-85 3-57 (111)
242 cd03040 GST_N_mPGES2 GST_N fam 88.0 1.2 2.7E-05 27.4 4.2 49 29-82 4-52 (77)
243 cd03045 GST_N_Delta_Epsilon GS 87.3 0.59 1.3E-05 28.5 2.4 56 29-90 3-62 (74)
244 cd03068 PDI_b_ERp72 PDIb famil 87.2 6.9 0.00015 26.2 8.2 72 6-85 3-74 (107)
245 PF04592 SelP_N: Selenoprotein 86.1 2 4.2E-05 33.3 5.1 49 17-65 20-72 (238)
246 COG1999 Uncharacterized protei 85.9 4.2 9.1E-05 30.7 6.9 54 22-75 66-127 (207)
247 PRK12559 transcriptional regul 85.4 0.88 1.9E-05 31.9 2.8 22 27-48 2-23 (131)
248 cd03019 DsbA_DsbA DsbA family, 85.4 1.2 2.6E-05 31.7 3.5 22 67-90 133-154 (178)
249 cd03032 ArsC_Spx Arsenate Redu 84.6 1.3 2.7E-05 30.1 3.2 32 29-66 4-35 (115)
250 COG0278 Glutaredoxin-related p 84.6 6.1 0.00013 26.8 6.3 71 11-90 5-82 (105)
251 TIGR02742 TrbC_Ftype type-F co 82.3 2.7 5.8E-05 29.6 4.1 77 2-88 6-82 (130)
252 PF13462 Thioredoxin_4: Thiore 82.3 2.8 6.1E-05 29.2 4.3 22 67-90 126-147 (162)
253 cd03055 GST_N_Omega GST_N fami 81.3 5.5 0.00012 25.4 5.1 49 30-82 22-71 (89)
254 PF09822 ABC_transp_aux: ABC-t 80.6 24 0.00052 27.2 12.7 59 22-80 23-91 (271)
255 PRK13344 spxA transcriptional 80.6 2 4.4E-05 30.1 3.1 33 28-66 3-35 (132)
256 PF06491 Disulph_isomer: Disul 79.9 14 0.00029 26.2 6.9 108 5-121 18-133 (136)
257 cd03025 DsbA_FrnE_like DsbA fa 78.8 3 6.5E-05 30.1 3.6 28 27-54 3-30 (193)
258 PF01323 DSBA: DSBA-like thior 78.7 3.2 7E-05 29.9 3.7 21 66-88 156-176 (193)
259 PF13743 Thioredoxin_5: Thiore 78.7 1.6 3.4E-05 32.0 2.0 20 66-85 136-155 (176)
260 cd03030 GRX_SH3BGR Glutaredoxi 78.3 10 0.00023 24.8 5.8 34 55-90 30-71 (92)
261 cd03024 DsbA_FrnE DsbA family, 78.0 2 4.3E-05 31.3 2.4 22 66-89 164-185 (201)
262 cd03056 GST_N_4 GST_N family, 77.2 3.7 8.1E-05 24.5 3.2 55 30-90 4-62 (73)
263 PRK10954 periplasmic protein d 76.5 3.9 8.4E-05 30.5 3.7 22 67-90 157-178 (207)
264 KOG2244 Highly conserved prote 76.3 1.3 2.8E-05 38.5 1.1 74 10-85 101-185 (786)
265 cd03023 DsbA_Com1_like DsbA fa 75.2 2.4 5.1E-05 29.1 2.1 22 67-90 119-140 (154)
266 COG0450 AhpC Peroxiredoxin [Po 74.9 34 0.00073 25.8 10.3 108 22-136 32-176 (194)
267 cd03052 GST_N_GDAP1 GST_N fami 73.0 17 0.00036 22.3 5.5 56 29-90 3-62 (73)
268 PF04134 DUF393: Protein of un 72.7 6.1 0.00013 26.2 3.6 57 30-88 2-61 (114)
269 cd03025 DsbA_FrnE_like DsbA fa 71.8 4.7 0.0001 29.1 3.1 23 66-88 158-180 (193)
270 PF01323 DSBA: DSBA-like thior 71.7 14 0.00031 26.4 5.6 40 27-66 2-42 (193)
271 PF11287 DUF3088: Protein of u 67.0 21 0.00046 24.5 5.2 81 35-120 24-107 (112)
272 COG3531 Predicted protein-disu 66.4 12 0.00026 28.4 4.2 47 67-121 164-210 (212)
273 KOG0911 Glutaredoxin-related p 65.3 5.3 0.00011 30.8 2.2 60 24-90 139-205 (227)
274 cd03022 DsbA_HCCA_Iso DsbA fam 64.9 3.8 8.1E-05 29.5 1.3 22 67-90 157-178 (192)
275 COG1651 DsbG Protein-disulfide 63.3 16 0.00035 27.5 4.6 31 23-53 84-114 (244)
276 COG3634 AhpF Alkyl hydroperoxi 62.8 37 0.0008 28.5 6.7 70 18-90 111-180 (520)
277 cd03033 ArsC_15kD Arsenate Red 62.3 8.9 0.00019 26.1 2.7 31 28-64 3-33 (113)
278 cd03061 GST_N_CLIC GST_N famil 60.2 46 0.00099 21.8 7.3 68 32-121 19-87 (91)
279 COG5429 Uncharacterized secret 59.5 24 0.00052 27.6 4.8 63 26-90 44-124 (261)
280 cd03074 PDI_b'_Calsequestrin_C 59.1 57 0.0012 22.5 8.9 91 23-119 20-119 (120)
281 cd03053 GST_N_Phi GST_N family 58.8 26 0.00057 21.0 4.3 55 30-90 5-63 (76)
282 KOG1364 Predicted ubiquitin re 58.7 18 0.0004 29.7 4.3 62 55-126 132-195 (356)
283 PF06953 ArsD: Arsenical resis 58.2 61 0.0013 22.6 6.9 63 41-119 29-101 (123)
284 cd02990 UAS_FAF1 UAS family, F 56.9 67 0.0015 22.7 11.4 92 21-119 19-132 (136)
285 cd02967 mauD Methylamine utili 56.3 13 0.00028 24.2 2.7 24 67-90 85-109 (114)
286 COG1651 DsbG Protein-disulfide 55.3 14 0.00029 28.0 3.0 25 25-49 120-144 (244)
287 COG1107 Archaea-specific RecJ- 54.9 26 0.00057 31.0 4.8 75 11-88 333-428 (715)
288 cd03049 GST_N_3 GST_N family, 53.0 38 0.00082 20.2 4.3 58 30-90 4-62 (73)
289 PF10413 Rhodopsin_N: Amino te 49.5 5.3 0.00011 21.7 -0.1 11 127-137 16-26 (36)
290 PRK10387 glutaredoxin 2; Provi 48.2 85 0.0018 22.7 6.2 56 30-90 4-59 (210)
291 cd03054 GST_N_Metaxin GST_N fa 47.2 60 0.0013 19.3 5.5 17 32-48 13-29 (72)
292 COG0722 AroG 3-deoxy-D-arabino 46.6 44 0.00095 27.3 4.6 43 10-58 39-89 (351)
293 COG0295 Cdd Cytidine deaminase 45.5 49 0.0011 23.4 4.3 6 35-40 88-93 (134)
294 PRK09481 sspA stringent starva 45.5 78 0.0017 23.2 5.7 60 25-90 9-69 (211)
295 cd03038 GST_N_etherase_LigE GS 45.0 66 0.0014 19.8 4.6 46 32-81 13-61 (84)
296 TIGR00014 arsC arsenate reduct 44.0 22 0.00047 24.0 2.3 31 29-65 3-33 (114)
297 cd03034 ArsC_ArsC Arsenate Red 43.5 23 0.00049 23.8 2.3 31 29-65 3-33 (112)
298 COG1393 ArsC Arsenate reductas 43.2 27 0.00059 23.9 2.7 24 29-52 5-28 (117)
299 PF03960 ArsC: ArsC family; I 42.1 32 0.0007 22.8 2.9 31 30-66 1-31 (110)
300 COG5494 Predicted thioredoxin/ 41.2 80 0.0017 24.4 5.1 56 30-91 16-71 (265)
301 PF14097 SpoVAE: Stage V sporu 40.7 48 0.001 24.6 3.7 31 2-32 31-61 (180)
302 TIGR02182 GRXB Glutaredoxin, G 39.6 1.4E+02 0.003 22.0 6.3 56 30-90 3-58 (209)
303 PF00352 TBP: Transcription fa 38.8 65 0.0014 20.5 3.9 59 45-121 21-80 (86)
304 cd03044 GST_N_EF1Bgamma GST_N 38.4 80 0.0017 18.9 4.1 56 30-90 4-62 (75)
305 COG4604 CeuD ABC-type enteroch 38.3 1.3E+02 0.0027 23.4 5.8 48 36-91 169-216 (252)
306 KOG2990 C2C2-type Zn-finger pr 38.2 38 0.00081 27.2 3.0 22 23-44 40-64 (317)
307 PF06764 DUF1223: Protein of u 38.0 1.7E+02 0.0038 22.0 7.9 79 29-122 4-100 (202)
308 TIGR02174 CXXU_selWTH selT/sel 38.0 14 0.00031 22.9 0.6 28 81-116 43-71 (72)
309 PF07700 HNOB: Heme NO binding 36.7 1E+02 0.0023 22.1 5.1 42 23-64 127-169 (171)
310 COG4279 Uncharacterized conser 36.6 2E+02 0.0043 22.7 6.7 30 33-62 131-161 (266)
311 PRK11752 putative S-transferas 33.3 1.5E+02 0.0033 22.8 5.8 55 28-82 45-105 (264)
312 PF09499 RE_ApaLI: ApaLI-like 33.2 1.5E+02 0.0033 22.1 5.4 42 13-54 133-174 (191)
313 PF00255 GSHPx: Glutathione pe 32.4 1.6E+02 0.0034 19.9 5.8 57 3-63 4-61 (108)
314 KOG0855 Alkyl hydroperoxide re 32.3 42 0.00092 25.0 2.3 31 21-51 88-123 (211)
315 PRK10853 putative reductase; P 32.1 66 0.0014 21.9 3.2 31 28-64 3-33 (118)
316 cd03058 GST_N_Tau GST_N family 29.7 1.3E+02 0.0027 17.8 6.4 55 30-90 4-60 (74)
317 cd03048 GST_N_Ure2p_like GST_N 29.2 57 0.0012 19.8 2.3 49 29-81 3-55 (81)
318 PRK13730 conjugal transfer pil 28.9 93 0.002 23.8 3.7 22 63-84 148-169 (212)
319 cd03042 GST_N_Zeta GST_N famil 28.8 1.1E+02 0.0024 17.8 3.6 54 31-90 5-62 (73)
320 TIGR01616 nitro_assoc nitrogen 28.6 67 0.0015 22.2 2.8 21 28-48 4-24 (126)
321 COG3011 Predicted thiol-disulf 28.5 2.2E+02 0.0048 20.2 5.5 65 24-90 7-73 (137)
322 TIGR02652 conserved hypothetic 28.3 19 0.00042 25.8 0.0 13 34-46 11-23 (163)
323 PF09654 DUF2396: Protein of u 28.2 19 0.00041 25.8 -0.1 13 34-46 8-20 (161)
324 TIGR02743 TraW type-F conjugat 28.0 68 0.0015 24.3 2.9 41 45-91 158-198 (202)
325 cd03022 DsbA_HCCA_Iso DsbA fam 28.0 1.5E+02 0.0032 21.0 4.7 30 29-58 3-32 (192)
326 PRK10026 arsenate reductase; P 27.0 96 0.0021 22.0 3.4 20 29-48 6-25 (141)
327 COG2101 SPT15 TATA-box binding 26.1 1.7E+02 0.0037 21.8 4.6 31 79-121 54-84 (185)
328 TIGR01287 nifH nitrogenase iro 25.7 53 0.0011 25.2 2.0 65 6-75 206-270 (275)
329 KOG2792 Putative cytochrome C 25.5 1.1E+02 0.0024 24.3 3.7 44 21-64 137-187 (280)
330 PF06616 BsuBI_PstI_RE: BsuBI/ 25.5 3.7E+02 0.008 21.8 6.8 94 35-133 161-265 (306)
331 TIGR00862 O-ClC intracellular 25.3 3.2E+02 0.0068 21.0 8.1 52 33-90 17-69 (236)
332 COG4707 Uncharacterized protei 24.9 1.7E+02 0.0037 19.7 4.0 20 109-128 86-105 (107)
333 PRK06246 fumarate hydratase; P 24.0 73 0.0016 25.4 2.5 58 65-134 53-115 (280)
334 KOG1371 UDP-glucose 4-epimeras 23.6 4.2E+02 0.0091 21.8 7.0 61 19-85 23-85 (343)
335 COG0821 gcpE 1-hydroxy-2-methy 23.3 3.6E+02 0.0078 22.3 6.3 65 25-91 256-332 (361)
336 COG3640 CooC CO dehydrogenase 22.6 1.5E+02 0.0034 23.3 4.0 25 56-80 30-54 (255)
337 PRK11331 5-methylcytosine-spec 22.2 1.6E+02 0.0035 25.2 4.4 25 77-101 63-87 (459)
338 KOG2824 Glutaredoxin-related p 21.9 1.2E+02 0.0026 24.2 3.4 59 25-90 132-202 (281)
339 cd03039 GST_N_Sigma_like GST_N 21.8 79 0.0017 18.7 1.9 55 30-90 4-60 (72)
340 cd04518 TBP_archaea archaeal T 21.5 1.8E+02 0.0039 21.3 4.1 19 102-121 151-169 (174)
341 PRK00394 transcription factor; 20.9 1.9E+02 0.0041 21.3 4.1 31 79-121 140-170 (179)
342 PF10865 DUF2703: Domain of un 20.7 3E+02 0.0065 19.0 5.8 54 32-90 12-72 (120)
343 KOG0852 Alkyl hydroperoxide re 20.6 3.8E+02 0.0082 20.2 8.9 106 21-136 31-176 (196)
344 PRK13738 conjugal transfer pil 20.5 1.1E+02 0.0023 23.3 2.8 41 46-92 157-199 (209)
345 PRK12756 phospho-2-dehydro-3-d 20.0 2.3E+02 0.0051 23.3 4.7 50 10-65 38-96 (348)
No 1
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=100.00 E-value=6.2e-42 Score=244.36 Aligned_cols=141 Identities=91% Similarity=1.442 Sum_probs=131.6
Q ss_pred CCccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcE
Q 032338 1 MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 ~~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt 80 (142)
|||+|++|++.++|++.|..+++++|||+|||+||+||+.|.|+|+++++++++.+.|++||+|+++++++.|+|+++||
T Consensus 1 ~~~~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t 80 (142)
T PLN00410 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCT 80 (142)
T ss_pred CcchHhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCc
Confidence 89999999999999999987778999999999999999999999999999998889999999999999999999997776
Q ss_pred EE-EEECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCchhhhcC
Q 032338 81 VM-FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142 (142)
Q Consensus 81 ~~-~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 142 (142)
++ ||++|+. .++.+.|.++++++.+.++++|++.++.+++|+++|||||+||+++++.+++
T Consensus 81 ~~~ffk~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~~~~~~~ 142 (142)
T PLN00410 81 VMFFFRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDYSTKYRY 142 (142)
T ss_pred EEEEEECCeE-EEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcccccccC
Confidence 66 7777764 6799999999999999999999999999999999999999999999988775
No 2
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-38 Score=219.00 Aligned_cols=142 Identities=77% Similarity=1.319 Sum_probs=139.9
Q ss_pred CCccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcE
Q 032338 1 MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 ~~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt 80 (142)
||||||+|+++++++++|..++.++|||.|..+|.+.|.+|...|.+.++++.+.++++-+|+++.+++.+.|++..+||
T Consensus 1 ms~lLp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~t 80 (142)
T KOG3414|consen 1 MSYLLPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPT 80 (142)
T ss_pred CceeccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCce
Confidence 89999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred EEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCchhhhcC
Q 032338 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142 (142)
Q Consensus 81 ~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 142 (142)
++||.+++++.+|+|++++++++|+++++++|+++++.+|+|+++|||||.||++|+++|+|
T Consensus 81 vmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy~~~y~~ 142 (142)
T KOG3414|consen 81 VMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGKGIVQSPKDYSTLYRY 142 (142)
T ss_pred EEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCCeEEECCcchHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 3
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=100.00 E-value=1.1e-35 Score=204.36 Aligned_cols=113 Identities=38% Similarity=0.764 Sum_probs=108.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++++.+.+.++++|||+|+|+||+||+.|.|.++++++++++.+.|++||+|++++++++|+|...||++||++|+++
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 57889999877799999999999999999999999999999986699999999999999999999999999999999999
Q ss_pred EEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
.+|+|+++++++++.++++++|+++++.+|||+
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr~a 114 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 114 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999985
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=100.00 E-value=1.5e-33 Score=194.52 Aligned_cols=114 Identities=81% Similarity=1.374 Sum_probs=107.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+.++|++.+..+.+++|||+|||+||+||+.|.|.++++++++++.+.|++||+|++++++++|+|.++||+++|++|+.
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 46789998876567899999999999999999999999999998788999999999999999999999999999999999
Q ss_pred EEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 90 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
+....|.++++++++.++++++|++.++.+|+++
T Consensus 81 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (114)
T cd02954 81 MKIDLGTGNNNKINWVFEDKQEFIDIIETIYRGA 114 (114)
T ss_pred EEEEcCCCCCceEEEecCcHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998864
No 5
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=100.00 E-value=1.4e-32 Score=191.44 Aligned_cols=133 Identities=80% Similarity=1.407 Sum_probs=120.2
Q ss_pred cCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEE
Q 032338 4 LLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 4 ~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 83 (142)
|||+|++++++|++|.++++++|+|.|..+|-+.|.+|..+|.+.++++++.+.++.||+++.|++.+.|++..+-|++|
T Consensus 1 ~L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmF 80 (133)
T PF02966_consen 1 LLPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMF 80 (133)
T ss_dssp SSEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEE
T ss_pred CCcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999899999999999999999999997777888
Q ss_pred EECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 84 f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
|.+|+++.+|+|+|++++++|+++++++|+++++.+|+|+++|||||+||++|
T Consensus 81 F~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 81 FFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp EETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT-SEEE-SS-G
T ss_pred EecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcCCeeEeCCCCC
Confidence 88999999999999999999999999999999999999999999999999986
No 6
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=169.78 Aligned_cols=103 Identities=18% Similarity=0.414 Sum_probs=92.8
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
.+.+..+|++.+.+ ++.||+|+|||+||+||+.|.|+++++.+++.+.+.+++||+|++.+++.+|+|..+||+++|+|
T Consensus 46 ~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfkn 124 (150)
T KOG0910|consen 46 NVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKN 124 (150)
T ss_pred cccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEEC
Confidence 45678899998875 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
|+.. +++.|+.+ ++.|.+.|++..
T Consensus 125 Ge~~---------d~~vG~~~-~~~l~~~i~k~l 148 (150)
T KOG0910|consen 125 GEKV---------DRFVGAVP-KEQLRSLIKKFL 148 (150)
T ss_pred CEEe---------eeecccCC-HHHHHHHHHHHh
Confidence 9998 47777764 678888888764
No 7
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=3.1e-25 Score=150.86 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=72.7
Q ss_pred CChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc----hhHHhhcCcCCCcEEEEE
Q 032338 9 HSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 9 ~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~I~~~Pt~~~f 84 (142)
++.++|++.+. ++++|+|+|||+||+||+.|.|.++++++++...+.|+++|+|.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 46788999883 578999999999999999999999999988655678999999986 689999999999999999
Q ss_pred ECCeEEE
Q 032338 85 FRNKHIM 91 (142)
Q Consensus 85 ~~g~~~~ 91 (142)
++|+.+.
T Consensus 80 k~G~~v~ 86 (103)
T PHA02278 80 KDGQLVK 86 (103)
T ss_pred ECCEEEE
Confidence 9999883
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=6.4e-25 Score=148.70 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=82.5
Q ss_pred CChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch---hHHhhcCcCCCcEEEEEE
Q 032338 9 HSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP---DFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 9 ~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~l~~~~~I~~~Pt~~~f~ 85 (142)
++.++|++.+.+..+++|||+|||+||++|+.+.|.++++++++ +.+.|++||+|++. +++++|+|.++||++||+
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 36889999998766899999999999999999999999999998 57899999999884 799999999999999999
Q ss_pred CCeEEEEecCCCccccccccccchhHHHHHHH
Q 032338 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 86 ~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 117 (142)
+|+.+. +..|.. .++|...+.
T Consensus 80 ~G~~v~---------~~~G~~--~~~l~~~~~ 100 (103)
T cd02985 80 DGEKIH---------EEEGIG--PDELIGDVL 100 (103)
T ss_pred CCeEEE---------EEeCCC--HHHHHHHHH
Confidence 999873 555542 355655443
No 9
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.1e-25 Score=150.10 Aligned_cols=94 Identities=16% Similarity=0.333 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEE
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~ 92 (142)
++........++++||+|||+|||||+.|.|.+++++++|.+ +.|++||+|++++++++++|.++|||+||++|+.+.
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~- 88 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD- 88 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE-
Confidence 333333345579999999999999999999999999999996 999999999999999999999999999999999984
Q ss_pred ecCCCccccccccccchhHHHHHHHH
Q 032338 93 DLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 93 ~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
++.|+ +++++.+.+++
T Consensus 89 --------~~vGa--~~~~l~~~i~~ 104 (106)
T KOG0907|consen 89 --------EVVGA--NKAELEKKIAK 104 (106)
T ss_pred --------EEecC--CHHHHHHHHHh
Confidence 56665 34566666654
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.91 E-value=6.8e-24 Score=143.36 Aligned_cols=98 Identities=8% Similarity=0.180 Sum_probs=83.9
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.++|.++|++++. ++++|+|+|||+||++|+.+.|.++++++++++ .+.|+.+|+| +++++++|+|+++||+++|+
T Consensus 3 ~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 4678999999874 578999999999999999999999999999875 4789999999 78899999999999999999
Q ss_pred CCeEEEEecCCCccccccccccchhHHHHHHHH
Q 032338 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 86 ~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+|+.+. ++.|. +.+++.+.|++
T Consensus 80 ~g~~~~---------~~~G~--~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVA---------VIRGA--NAPLLNKTITE 101 (102)
T ss_pred CCEEEE---------EEecC--ChHHHHHHHhh
Confidence 999883 55553 35677777664
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.4e-23 Score=139.38 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEE
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~ 92 (142)
+|++.+.++.+++++|+|||+||++|+.+.|.++++++.+.+.+.+++||++++++++++|+|.++||+++|++|+.+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~- 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD- 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee-
Confidence 5777777666789999999999999999999999999999878899999999999999999999999999999998773
Q ss_pred ecCCCccccccccccchhHHHHHH
Q 032338 93 DLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 93 ~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
+..|.. +.++|.++|
T Consensus 81 --------~~~g~~-~~~~l~~~l 95 (96)
T cd02956 81 --------GFQGAQ-PEEQLRQML 95 (96)
T ss_pred --------eecCCC-CHHHHHHHh
Confidence 344432 356666655
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=2.6e-23 Score=144.90 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=87.3
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHH--HH--HHHHHHHHHHHHh--cCceEEEEEeCCCchhHHhhcCcCCCc
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDT--CM--QMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPS 79 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~I~~~P 79 (142)
..+ +.++|++.+.+ ++.++|++|||+||+| |+ ++.|+++++++++ .+.+.|++||+|++++++++|+|+++|
T Consensus 12 ~~l-t~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 12 IDL-NEKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred eeC-ChhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 344 47899998875 4679999999999988 99 8999999999998 778999999999999999999999999
Q ss_pred EEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 80 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 80 t~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
|+++|++|+.+. ..|.. +++.|.++|+++.
T Consensus 90 Tl~lfk~G~~v~----------~~G~~-~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE----------YDGEF-AADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE----------eeCCC-CHHHHHHHHHHHh
Confidence 999999999772 34443 4688888888763
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=1.2e-22 Score=135.31 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=87.6
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+.++|++.+.+ ++++++|.||++||++|+.+.|.++++++++.+++.|+.||+++++.++++|+|.++||+++|++|+.
T Consensus 5 t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 5 TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE 83 (103)
T ss_dssp STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE
T ss_pred CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcE
Confidence 57889998875 57899999999999999999999999999998899999999999999999999999999999999998
Q ss_pred EEEecCCCccccccccccchhHHHHHHHH
Q 032338 90 IMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 90 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
.. +..|. .+.++|.++|++
T Consensus 84 ~~---------~~~g~-~~~~~l~~~i~~ 102 (103)
T PF00085_consen 84 VK---------RYNGP-RNAESLIEFIEK 102 (103)
T ss_dssp EE---------EEESS-SSHHHHHHHHHH
T ss_pred EE---------EEECC-CCHHHHHHHHHc
Confidence 84 44554 356889988876
No 14
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=3.5e-23 Score=142.96 Aligned_cols=81 Identities=10% Similarity=0.163 Sum_probs=72.2
Q ss_pred ChHHHHHHHH-hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHH-hhcCcCCCcEEEEEECC
Q 032338 10 SGWAVDQAIL-TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFN-TMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 ~~~~~~~~i~-~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~-~~~~I~~~Pt~~~f~~g 87 (142)
++.+|++++. ..++++++|+||||||++|+.|.|.++++++++++.+.|++||++++++++ ++|+|.++||+++|++|
T Consensus 15 ~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g 94 (113)
T cd03006 15 YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRS 94 (113)
T ss_pred chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECC
Confidence 3677887632 246789999999999999999999999999999888999999999999998 58999999999999999
Q ss_pred eEE
Q 032338 88 KHI 90 (142)
Q Consensus 88 ~~~ 90 (142)
+..
T Consensus 95 ~~~ 97 (113)
T cd03006 95 RGP 97 (113)
T ss_pred ccc
Confidence 865
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=4.2e-23 Score=139.05 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.++ +.++|++.+.+ ++++++|+|||+||++|+.+.|.++++++++.+.+.|+++|++++++++++|+|.++||+++|+
T Consensus 4 ~~l-~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 4 ITL-TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred eEc-CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 344 47799998765 4679999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eEE
Q 032338 86 RN-KHI 90 (142)
Q Consensus 86 ~g-~~~ 90 (142)
+| +.+
T Consensus 82 ~g~~~~ 87 (104)
T cd03004 82 GNASKY 87 (104)
T ss_pred CCCCCc
Confidence 98 544
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=9.3e-23 Score=136.94 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=74.1
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
++ +.++|++.+. ++++++|.|||+||++|+.+.|.++++++++++.+.|++||+++++.++++++|.++||+++|++
T Consensus 5 ~l-~~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 5 TL-DRGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred Ec-CHhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 44 4779999874 45899999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEE
Q 032338 87 NKHI 90 (142)
Q Consensus 87 g~~~ 90 (142)
|+.+
T Consensus 82 g~~~ 85 (101)
T cd03003 82 GMNP 85 (101)
T ss_pred CCCc
Confidence 9765
No 17
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=1.6e-22 Score=138.74 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=82.0
Q ss_pred ChHHHHHHHH-hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 10 SGWAVDQAIL-TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 ~~~~~~~~i~-~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
+.++|++.+. .+.+++++|+||||||++|+.+.|.++++++++.+ ++.+++||+++++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 5677865443 34678999999999999999999999999999975 589999999999999999999999999999999
Q ss_pred eEEEEecCCCccccccccccchhHHHHHHHH
Q 032338 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+.+. +..|.. +.++|.++|++
T Consensus 90 ~~~~---------~~~G~~-~~~~l~~~i~~ 110 (111)
T cd02963 90 QVTF---------YHDSSF-TKQHVVDFVRK 110 (111)
T ss_pred EEEE---------EecCCC-CHHHHHHHHhc
Confidence 8763 334432 35677777765
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=159.10 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=89.6
Q ss_pred ChHHHHHHHHhcC-CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 10 SGWAVDQAILTEE-ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 10 ~~~~~~~~i~~~~-~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+..+|++.|...+ .+||+|+||||||++|+.+.|.+++++.++++.+.+++||+|+++.++.+|+|+++||++.|++|+
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCc
Confidence 4778877666544 449999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCccccccccccchhHHHHHHHHHHHh
Q 032338 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 89 ~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 122 (142)
.+ +-+.|.. .++.+.++|+++...
T Consensus 109 pV---------dgF~G~q-Pesqlr~~ld~~~~~ 132 (304)
T COG3118 109 PV---------DGFQGAQ-PESQLRQFLDKVLPA 132 (304)
T ss_pred Cc---------cccCCCC-cHHHHHHHHHHhcCh
Confidence 98 3566654 467888888886433
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=1.6e-22 Score=136.50 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC-CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 14 VDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 14 ~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
+.+++...++++|+|+|||+||++|+.+.|.+++++++++ .+.++.||.+ ++++++++|+|.++||+++|++| .+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 4455556789999999999999999999999999999987 5889999999 89999999999999999999988 44
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.88 E-value=5.6e-22 Score=141.19 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=86.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+.++|++++. ++++|+|+|||+||++|+.+.|.++++++++.+++.++++|++++++++++|+|.++||+++|++|+.
T Consensus 41 ~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 41 TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 5788988763 47899999999999999999999999999988889999999999999999999999999999999998
Q ss_pred EEEecCCCccccccccccchhHHHHHHHHH
Q 032338 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 90 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+. ++.|.. ++++|.++|+++
T Consensus 119 v~---------~~~G~~-~~e~l~~~l~~~ 138 (139)
T PRK10996 119 VD---------MLNGAV-PKAPFDSWLNEA 138 (139)
T ss_pred EE---------EEcCCC-CHHHHHHHHHHh
Confidence 73 455543 468888888875
No 21
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.88 E-value=6.5e-22 Score=131.29 Aligned_cols=82 Identities=17% Similarity=0.426 Sum_probs=75.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
|.+++++++....+++|+|.|||+||++|+.|.|.++++++++...+.++++|.+++++++++|+|.++||+++|++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 46789998876557999999999999999999999999999976689999999999999999999999999999999988
Q ss_pred EE
Q 032338 90 IM 91 (142)
Q Consensus 90 ~~ 91 (142)
+.
T Consensus 81 ~~ 82 (97)
T cd02984 81 VD 82 (97)
T ss_pred EE
Confidence 73
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=1.1e-21 Score=133.21 Aligned_cols=108 Identities=18% Similarity=0.329 Sum_probs=89.1
Q ss_pred CCccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcE
Q 032338 1 MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 ~~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt 80 (142)
||=-+.+++ .++|++.+.+ .+++++|+||++||++|+.+.|.++++++++.+.+.++.+|++.++.++++|+|.++||
T Consensus 1 ~~~~v~~~~-~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 1 MSDKIIHLT-DDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred CCCcceeeC-hhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 344456664 5788876654 57899999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 81 ~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+++|++|+.+. +..|.. +.+++.++|++..
T Consensus 79 ~~~~~~G~~~~---------~~~G~~-~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAA---------TKVGAL-SKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEE---------EecCCC-CHHHHHHHHHHhc
Confidence 99999998773 344443 3577787777653
No 23
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=1e-21 Score=141.99 Aligned_cols=86 Identities=13% Similarity=0.288 Sum_probs=76.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCC------CcEEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYD------PSTVM 82 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~------~Pt~~ 82 (142)
+.++|++.+..+.+++|+|+|||+||++|+.+.|.++++++++.+ ++.|++||++++++++++|+|++ +||++
T Consensus 34 ~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~i 113 (152)
T cd02962 34 TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTII 113 (152)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEE
Confidence 367899888665668999999999999999999999999999874 59999999999999999999988 99999
Q ss_pred EEECCeEEEEecC
Q 032338 83 FFFRNKHIMIDLG 95 (142)
Q Consensus 83 ~f~~g~~~~~~~g 95 (142)
+|++|+.+....|
T Consensus 114 lf~~Gk~v~r~~G 126 (152)
T cd02962 114 LFQGGKEVARRPY 126 (152)
T ss_pred EEECCEEEEEEec
Confidence 9999998864444
No 24
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.88 E-value=7.3e-22 Score=136.13 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=77.3
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+..|++.++|++.+.+ +++|+|+|||+||++|+.|.|.++++++++. .+.|++||++++++++++|+|.++||+++|
T Consensus 6 v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 6 YREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred eEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 4567888999998853 5799999999999999999999999999986 589999999999999999999999999999
Q ss_pred ECCeEEEE
Q 032338 85 FRNKHIMI 92 (142)
Q Consensus 85 ~~g~~~~~ 92 (142)
++|+.+..
T Consensus 83 k~G~~v~~ 90 (113)
T cd02989 83 KNGKTVDR 90 (113)
T ss_pred ECCEEEEE
Confidence 99998753
No 25
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=5.2e-22 Score=136.34 Aligned_cols=83 Identities=10% Similarity=0.171 Sum_probs=75.1
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCC--CHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDW--DDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~W--C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 83 (142)
|++ ++.+|++.+ ..+.++||.|||+| |++|+.+.|+++++++++.+.+.|+++|++++++++.+|+|+++||+++
T Consensus 13 ~~~-~~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 13 PRV-DAATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred ccc-ccccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 444 477888776 35679999999997 9999999999999999999889999999999999999999999999999
Q ss_pred EECCeEEE
Q 032338 84 FFRNKHIM 91 (142)
Q Consensus 84 f~~g~~~~ 91 (142)
|++|+.+.
T Consensus 90 fkdGk~v~ 97 (111)
T cd02965 90 FRDGRYVG 97 (111)
T ss_pred EECCEEEE
Confidence 99999883
No 26
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.7e-22 Score=152.35 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=95.0
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+..+++..+|+..+.....+.|+|+|+|+||+||++++|+++.++.+|. ..+|++||+|+.+..|..++|.+.|||+||
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 4557889999998887778999999999999999999999999999996 789999999999999999999999999999
Q ss_pred ECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 85 ~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
.||.++ +++.|+ ++..|.+.+.++...+
T Consensus 82 ~ng~ki---------d~~qGA--d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 82 RNGVKI---------DQIQGA--DASGLEEKVAKYASTS 109 (288)
T ss_pred ecCeEe---------eeecCC--CHHHHHHHHHHHhccC
Confidence 999998 467776 5678888888854433
No 27
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.87 E-value=8.6e-22 Score=135.30 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=74.6
Q ss_pred cccCChHHHHHHHHhcC-CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 6 PHLHSGWAVDQAILTEE-ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~-~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
.++++ ++|.+.+.+.+ +++|+|+||||||++|+.+.|.++++++++. .+.|++||++++ +++++|+|.++||+++|
T Consensus 7 ~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f 83 (113)
T cd02957 7 REISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLVY 83 (113)
T ss_pred EEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEEE
Confidence 45665 89988886532 4899999999999999999999999999986 588999999999 99999999999999999
Q ss_pred ECCeEEEE
Q 032338 85 FRNKHIMI 92 (142)
Q Consensus 85 ~~g~~~~~ 92 (142)
++|+.+..
T Consensus 84 ~~G~~v~~ 91 (113)
T cd02957 84 KNGELIDN 91 (113)
T ss_pred ECCEEEEE
Confidence 99998853
No 28
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=1.7e-21 Score=132.40 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=70.5
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc------CceEEEEEeCCCchhHHhhcCcCCCcEEEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK------NFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~------~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 83 (142)
+.++|++.+. ++++++|.|||+||++|+.+.|.++++++.++ +.+.++++|++++++++++|+|+++||+++
T Consensus 7 ~~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~ 84 (108)
T cd02996 7 TSGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKL 84 (108)
T ss_pred CHhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEE
Confidence 4789998773 46899999999999999999999999998763 248899999999999999999999999999
Q ss_pred EECCeEE
Q 032338 84 FFRNKHI 90 (142)
Q Consensus 84 f~~g~~~ 90 (142)
|++|+..
T Consensus 85 ~~~g~~~ 91 (108)
T cd02996 85 FRNGMMM 91 (108)
T ss_pred EeCCcCc
Confidence 9999854
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=4.2e-21 Score=137.24 Aligned_cols=101 Identities=11% Similarity=0.171 Sum_probs=83.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc--hhHHhhcCcCCCcEEEEEE-CC
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFF-RN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~~~I~~~Pt~~~f~-~g 87 (142)
..++++++ ..+++|||+|||+||++|+.+.|.++++++++.+.+.|+.||++.. ..++++|+|.++||++||+ +|
T Consensus 10 ~~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 10 STPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred cCCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 55677766 3578999999999999999999999999999987788888888765 5789999999999999995 78
Q ss_pred eEEEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
+.+. ++.|.. ..++|.+.|+.+..+.
T Consensus 88 ~~v~---------~~~G~~-~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---------QSIGLQ-PKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---------EEeCCC-CHHHHHHHHHHHHcCC
Confidence 8773 455543 4688999998887655
No 30
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=6.2e-21 Score=126.91 Aligned_cols=85 Identities=14% Similarity=0.270 Sum_probs=77.5
Q ss_pred cCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEE
Q 032338 4 LLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 4 ~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 83 (142)
|+.++++.+++++++. .+++++|.|||+||++|+.+.|.++++++++. .+.++.+|.++++.++++|+|.++||+++
T Consensus 1 ~v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 1 MVHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred CeEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 4667889999999874 46899999999999999999999999999875 68999999999999999999999999999
Q ss_pred EECCeEEE
Q 032338 84 FFRNKHIM 91 (142)
Q Consensus 84 f~~g~~~~ 91 (142)
|++|+.+.
T Consensus 78 ~~~g~~~~ 85 (98)
T PTZ00051 78 FKNGSVVD 85 (98)
T ss_pred EeCCeEEE
Confidence 99999884
No 31
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=9e-21 Score=144.81 Aligned_cols=106 Identities=10% Similarity=0.187 Sum_probs=88.9
Q ss_pred ChHHHHHHHHhc---CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 10 SGWAVDQAILTE---EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 ~~~~~~~~i~~~---~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
+.++|++.+... .+++++|+|||+||++|+.+.|.++++++++++.+.++++|++++++++++|+|.++||+++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 477899887643 25799999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhc
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 125 (142)
|+.+... .| ..+.++|.+++.+.+.....
T Consensus 116 G~~v~~~---------~G-~~s~e~L~~fi~~~~~~~~~ 144 (224)
T PTZ00443 116 GKMYQYE---------GG-DRSTEKLAAFALGDFKKALG 144 (224)
T ss_pred CEEEEee---------CC-CCCHHHHHHHHHHHHHhhcC
Confidence 9876321 12 23468888888888765553
No 32
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=9e-21 Score=127.01 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=77.1
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
.++ +.++|++.+. ++ ++|+|||+||++|+.+.|.++++++.+++ .+.++++|+++++.++++|+|.++||+++|
T Consensus 4 ~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 4 VEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred EEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 345 4778998762 33 78999999999999999999999998764 689999999999999999999999999999
Q ss_pred ECCeEEEEecCCCccccccccccchhHHHHHHH
Q 032338 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 85 ~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 117 (142)
++|+.. +..|. .+.++|.++++
T Consensus 79 ~~g~~~----------~~~G~-~~~~~l~~~i~ 100 (101)
T cd02994 79 KDGVFR----------RYQGP-RDKEDLISFIE 100 (101)
T ss_pred CCCCEE----------EecCC-CCHHHHHHHHh
Confidence 988742 22332 23566776664
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=8.8e-21 Score=128.30 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=71.6
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC--chhHHhhcCcCCCcEEEEEECC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
+.++|++.+.+ .+++++|.|||+||++|+.+.|.++++++++.+.+.++.+|++. +++++++|+|.++||+++|++|
T Consensus 6 ~~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~ 84 (109)
T cd03002 6 TPKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPP 84 (109)
T ss_pred chhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCC
Confidence 36789888864 57899999999999999999999999999998888999999998 8899999999999999999988
Q ss_pred e
Q 032338 88 K 88 (142)
Q Consensus 88 ~ 88 (142)
+
T Consensus 85 ~ 85 (109)
T cd03002 85 K 85 (109)
T ss_pred C
Confidence 6
No 34
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=1.1e-20 Score=126.24 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=71.6
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEE
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 83 (142)
++ +.++|++.+.+ + +++|.|||+||++|+.+.|.++++++++.+ .+.++.+|+++++.++++|+|.++||+++
T Consensus 4 ~l-~~~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 4 EL-TEDNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred EC-CHHHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 44 46789998853 3 599999999999999999999999999876 69999999999999999999999999999
Q ss_pred EECCeEE
Q 032338 84 FFRNKHI 90 (142)
Q Consensus 84 f~~g~~~ 90 (142)
|++|+.+
T Consensus 80 ~~~g~~~ 86 (102)
T cd03005 80 FKDGEKV 86 (102)
T ss_pred EeCCCee
Confidence 9999865
No 35
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=9e-21 Score=127.86 Aligned_cols=93 Identities=22% Similarity=0.406 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCC----chhHHhhcCcCCCcEEEEE
Q 032338 12 WAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~I~~~Pt~~~f 84 (142)
++|++++. ++++|+|+|||+||++|+.+.|.+ +++++.+.+++.++.+|+++ +++++++|+|.++||++||
T Consensus 2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 56778774 468999999999999999999988 68888887789999999987 5789999999999999999
Q ss_pred E--CCeEEEEecCCCccccccccccchhHHHHHH
Q 032338 85 F--RNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 85 ~--~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
+ +|+.+ .+..|.. +.++|.++|
T Consensus 80 ~~~~g~~~---------~~~~G~~-~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEP---------LRLPGFL-TADEFLEAL 103 (104)
T ss_pred CCCCCCCC---------ccccccc-CHHHHHHHh
Confidence 8 56655 3455554 467777665
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.85 E-value=2.7e-20 Score=124.43 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=72.4
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+.+++++.+.. .+++++|.|||+||++|+.+.|.+.++++++.+.+.++.+|++++++++++|+|+++||+++|++|+.
T Consensus 6 ~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 84 (103)
T cd03001 6 TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKN 84 (103)
T ss_pred CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCc
Confidence 47789888764 46789999999999999999999999999998889999999999999999999999999999998844
Q ss_pred E
Q 032338 90 I 90 (142)
Q Consensus 90 ~ 90 (142)
.
T Consensus 85 ~ 85 (103)
T cd03001 85 S 85 (103)
T ss_pred c
Confidence 4
No 37
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.84 E-value=3.8e-20 Score=123.63 Aligned_cols=94 Identities=17% Similarity=0.323 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEE
Q 032338 12 WAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~ 91 (142)
..++..+.+ .+++|+|.||++||++|+.+.|.++++++++.+.+.++++|++++++++++++|.++||+++|++|+.+.
T Consensus 3 ~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 3 YALRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred hhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 346676765 6789999999999999999999999999998878999999999999999999999999999999998773
Q ss_pred EecCCCccccccccccchhHHHHHH
Q 032338 92 IDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 92 ~~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
++.|. .++++|.++|
T Consensus 82 ---------~~~g~-~~~~~~~~~l 96 (97)
T cd02949 82 ---------EISGV-KMKSEYREFI 96 (97)
T ss_pred ---------EEeCC-ccHHHHHHhh
Confidence 44443 3457777665
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.84 E-value=5.8e-20 Score=121.68 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=83.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+.++|++.+.. .+++++|.||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|.+|+.
T Consensus 2 ~~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 2 TDANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CHHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 46788888764 46799999999999999999999999999988789999999999999999999999999999999887
Q ss_pred EEEecCCCccccccccccchhHHHHHHHHH
Q 032338 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 90 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+. +..|. .+.+++.++|++.
T Consensus 81 ~~---------~~~g~-~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VD---------RSVGA-LPKAALKQLINKN 100 (101)
T ss_pred ee---------eecCC-CCHHHHHHHHHhh
Confidence 63 23333 2457788777653
No 39
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.84 E-value=2.4e-20 Score=137.72 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=74.5
Q ss_pred cccCChHHHHHHHHhcC-CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 6 PHLHSGWAVDQAILTEE-ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~-~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
.+|++.++|.+.+...+ +.+|||+|||+||++|+.|.|.|+++++++. .+.|++||++++ .++..|+|.++||+++|
T Consensus 65 ~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTllly 142 (175)
T cd02987 65 YELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPALLVY 142 (175)
T ss_pred EEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEEEEE
Confidence 45677788988876432 3599999999999999999999999999986 799999999988 89999999999999999
Q ss_pred ECCeEEE
Q 032338 85 FRNKHIM 91 (142)
Q Consensus 85 ~~g~~~~ 91 (142)
++|+.+.
T Consensus 143 k~G~~v~ 149 (175)
T cd02987 143 KGGELIG 149 (175)
T ss_pred ECCEEEE
Confidence 9999874
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.84 E-value=4.1e-20 Score=127.32 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCcccc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 101 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~ 101 (142)
.++.++|.|||+||++|+.+.|+++++++++ +.+.++.+|++++++++++|+|.++||+++|++|+... + -+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~-----~--~~ 92 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG-----G--IR 92 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc-----e--EE
Confidence 4567999999999999999999999999886 57899999999999999999999999999999875441 0 13
Q ss_pred ccccccchhHHHHHHHHHHH
Q 032338 102 INWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 102 ~~~~~~~~~~l~~~l~~~~~ 121 (142)
..| +.+..+|.++|+.++.
T Consensus 93 ~~G-~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYG-LPAGYEFASLIEDIVR 111 (113)
T ss_pred EEe-cCchHHHHHHHHHHHh
Confidence 444 4567899999998765
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=7.4e-20 Score=123.57 Aligned_cols=95 Identities=12% Similarity=0.248 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
+++|+++. ++++++|.|||+||++|+.+.|.++++++++++ .+.++.+|+++++.++++|+|.++||+++|++|
T Consensus 6 ~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 6 DDSFKDVR---KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhhhhc---cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 46777742 357999999999999999999999999999843 488999999999999999999999999999766
Q ss_pred eEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
... +..|. .+.++|.++++++
T Consensus 83 ~~~----------~~~G~-~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAY----------NYRGP-RTKDDIVEFANRV 103 (104)
T ss_pred Cce----------eecCC-CCHHHHHHHHHhh
Confidence 432 22332 2457777777654
No 42
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.83 E-value=7.8e-20 Score=122.25 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=71.8
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc--CceEEEEEeCCC--chhHHhhcCcCCCcEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK--NFAVIYLVDISE--VPDFNTMYELYDPSTV 81 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~--~~~l~~~~~I~~~Pt~ 81 (142)
.+++ ..+|++.+. ++++++|.|||+||++|+.+.|.+.++++.+. +.+.++.+|+++ ++.+++.++|+++||+
T Consensus 3 ~~l~-~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 3 VHLT-DEDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred EEec-hHhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 3454 568888775 35699999999999999999999999999886 568899999998 8999999999999999
Q ss_pred EEEECCeEE
Q 032338 82 MFFFRNKHI 90 (142)
Q Consensus 82 ~~f~~g~~~ 90 (142)
++|++|+.+
T Consensus 80 ~~~~~g~~~ 88 (104)
T cd02997 80 KYFENGKFV 88 (104)
T ss_pred EEEeCCCee
Confidence 999999865
No 43
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.82 E-value=7.2e-20 Score=127.39 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=75.5
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEec-------CCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-------chhHHhh
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGH-------DWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-------VPDFNTM 72 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a-------~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-------~~~l~~~ 72 (142)
++++.++|.+.+...++++|+|+||| +||++|+.+.|.++++++++++++.|++||+++ +.+++..
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 56788999998886667899999999 999999999999999999988789999999976 4589999
Q ss_pred cCcC-CCcEEEEEECCeEE
Q 032338 73 YELY-DPSTVMFFFRNKHI 90 (142)
Q Consensus 73 ~~I~-~~Pt~~~f~~g~~~ 90 (142)
++|. ++||+++|++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9999 99999999887665
No 44
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.2e-19 Score=123.81 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=70.8
Q ss_pred ChHHHHHHHH-hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC-chhHHh-hcCcCCCcEEEEEE
Q 032338 10 SGWAVDQAIL-TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE-VPDFNT-MYELYDPSTVMFFF 85 (142)
Q Consensus 10 ~~~~~~~~i~-~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-~~~l~~-~~~I~~~Pt~~~f~ 85 (142)
+.++|++++. ..++++++|.|||+||++|+.+.|.++++++++++ .+.++.||++. +..++. .++|+++||+++|.
T Consensus 7 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~ 86 (109)
T cd02993 7 SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFP 86 (109)
T ss_pred cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEc
Confidence 3668888775 24578999999999999999999999999999986 48999999997 577776 59999999999998
Q ss_pred CCeEEEEec
Q 032338 86 RNKHIMIDL 94 (142)
Q Consensus 86 ~g~~~~~~~ 94 (142)
+|......|
T Consensus 87 ~~~~~~~~y 95 (109)
T cd02993 87 KNSRQPIKY 95 (109)
T ss_pred CCCCCceec
Confidence 875433333
No 45
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.82 E-value=1.8e-19 Score=125.27 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=82.6
Q ss_pred hHHHHHHHHhcCC-CeEEEEEecCCCHHHHHHHHHHH---HHHHHhcCceEEEEEeCCCc-------------hhHHhhc
Q 032338 11 GWAVDQAILTEEE-RVVIIRFGHDWDDTCMQMDEVLS---SVAETIKNFAVIYLVDISEV-------------PDFNTMY 73 (142)
Q Consensus 11 ~~~~~~~i~~~~~-k~vvv~F~a~WC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~-------------~~l~~~~ 73 (142)
.+++++++. ++ ++|+|.|||+||++|+.+.|.+. ++.+.+.+.+.++.+|++++ .+++..|
T Consensus 3 ~~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 356666653 46 89999999999999999999885 66666666788999999864 6899999
Q ss_pred CcCCCcEEEEEECC--eEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcC
Q 032338 74 ELYDPSTVMFFFRN--KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
Q Consensus 74 ~I~~~Pt~~~f~~g--~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g 126 (142)
+|.++||++||.++ +.+ .++.|.. +.++|...|+.+..+..+|
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~---------~~~~G~~-~~~~~~~~l~~~~~~~~~~ 125 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEI---------ARLPGYL-PPDEFLAYLEYVQEKAYKK 125 (125)
T ss_pred CCccccEEEEEcCCCCcee---------EEecCCC-CHHHHHHHHHHHHhhhhcC
Confidence 99999999999864 555 2455554 4688999999888776654
No 46
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.82 E-value=1.6e-19 Score=120.00 Aligned_cols=97 Identities=19% Similarity=0.343 Sum_probs=81.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
++++|++.+. ++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+|+++++.++++|+|.++|++++|++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4678888875 578999999999999999999999999999876 699999999999999999999999999999988
Q ss_pred eEEEEecCCCccccccccccchhHHHHHHHH
Q 032338 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+.. . +..|.. +.++|..+|++
T Consensus 80 ~~~-~--------~~~g~~-~~~~l~~~i~~ 100 (102)
T TIGR01126 80 KKP-V--------DYEGGR-DLEAIVEFVNE 100 (102)
T ss_pred Ccc-e--------eecCCC-CHHHHHHHHHh
Confidence 753 1 233332 34667777765
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.82 E-value=2.6e-19 Score=125.07 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=73.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-----------hHHhhcC----
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----------DFNTMYE---- 74 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------~l~~~~~---- 74 (142)
+.+++.+.+. +++.++|+|+++|||+|+++.|+|++++++ .++.++.||++.++ ++.+.|+
T Consensus 12 t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 12 TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 4677888774 467899999999999999999999999998 35778899988543 4556665
Q ss_pred cCCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHH
Q 032338 75 LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 75 I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
|.++||+++|++|+.+. ++.|...+.++|.+++
T Consensus 88 i~~~PT~v~~k~Gk~v~---------~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 88 FMGTPTFVHITDGKQVS---------VRCGSSTTAQELQDIA 120 (122)
T ss_pred CCCCCEEEEEeCCeEEE---------EEeCCCCCHHHHHHHh
Confidence 55699999999999984 4445444467776665
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=5.1e-19 Score=122.00 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=69.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCC--CchhHHhhcCcCCCcEEEEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDIS--EVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~~~I~~~Pt~~~f 84 (142)
+.++|++.+.+. +++|+|+|||+||++|+.+.|.++++++++++ .+.++.+|++ .+++++++|+|+++||+++|
T Consensus 7 ~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf 85 (114)
T cd02992 7 DAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYF 85 (114)
T ss_pred CHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEE
Confidence 477899988754 58999999999999999999999999998753 4888999965 57789999999999999999
Q ss_pred ECCeEE
Q 032338 85 FRNKHI 90 (142)
Q Consensus 85 ~~g~~~ 90 (142)
++|+..
T Consensus 86 ~~~~~~ 91 (114)
T cd02992 86 PPFSKE 91 (114)
T ss_pred CCCCcc
Confidence 988744
No 49
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.80 E-value=2.9e-19 Score=119.37 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=71.2
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc--CceEEEEEeCCC-chhHHhhcCcCCCcEEEE
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK--NFAVIYLVDISE-VPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~-~~~l~~~~~I~~~Pt~~~ 83 (142)
.+ +.+++++.+.+ .+++++|.|||+||++|+.+.|.++++++.++ +++.++.+|++. +++++++|+|.++||+++
T Consensus 4 ~l-~~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 4 EL-TDSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred Ec-chhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 44 35788887654 46799999999999999999999999999986 469999999999 999999999999999999
Q ss_pred EECCeE
Q 032338 84 FFRNKH 89 (142)
Q Consensus 84 f~~g~~ 89 (142)
|.+|..
T Consensus 82 ~~~~~~ 87 (105)
T cd02998 82 FPKGST 87 (105)
T ss_pred EeCCCC
Confidence 998743
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.79 E-value=1.1e-18 Score=145.00 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=82.6
Q ss_pred CcccCChHHHHHHHH-hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEeCCCch-hHH-hhcCcCCCcE
Q 032338 5 LPHLHSGWAVDQAIL-TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNF-AVIYLVDISEVP-DFN-TMYELYDPST 80 (142)
Q Consensus 5 l~~l~~~~~~~~~i~-~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~~~-~l~-~~~~I~~~Pt 80 (142)
+.+|+ .++|+..+. .+.+++|||+||||||++|+.|.|.++++++++.+. +.|++||+|.++ .++ ++|+|.++||
T Consensus 353 Vv~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 353 VVSLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred eEECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 34444 668999875 467889999999999999999999999999999764 889999999764 454 6899999999
Q ss_pred EEEEECCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 81 ~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
++||++|....+.|.++ -.+.+.|+.+++.+
T Consensus 432 ii~Fk~g~~~~~~Y~~g--------~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 432 ILFFPKHSSRPIKYPSE--------KRDVDSLMSFVNLL 462 (463)
T ss_pred EEEEECCCCCceeCCCC--------CCCHHHHHHHHHhh
Confidence 99999986443444221 12457778777764
No 51
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.79 E-value=1.1e-18 Score=116.58 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=69.6
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+++ +++|++.+.+ .+++++|.|||+||++|+.+.|.++++++.+++ ++.++++|++.+ +++..+++.++||+++|
T Consensus 4 ~l~-~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 4 VVV-GKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred EEc-hhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 443 6789888765 468999999999999999999999999999876 599999999988 57888999999999999
Q ss_pred ECCe
Q 032338 85 FRNK 88 (142)
Q Consensus 85 ~~g~ 88 (142)
.+|+
T Consensus 81 ~~~~ 84 (104)
T cd02995 81 PAGD 84 (104)
T ss_pred cCCC
Confidence 9887
No 52
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.78 E-value=2.1e-18 Score=113.32 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=69.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHh--cCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
+.++|.+.+.+ +++++|.||++||++|+.+.|.+.++++.+ .+.+.++.+|+++++.++++|+|+++||+++|.+|
T Consensus 4 ~~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 36788888754 459999999999999999999999999998 56899999999999999999999999999999887
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.77 E-value=3.8e-18 Score=141.75 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=82.8
Q ss_pred ChHHHHHHHH-hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC-CchhHHh-hcCcCCCcEEEEEE
Q 032338 10 SGWAVDQAIL-TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS-EVPDFNT-MYELYDPSTVMFFF 85 (142)
Q Consensus 10 ~~~~~~~~i~-~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d-~~~~l~~-~~~I~~~Pt~~~f~ 85 (142)
+.++|++++. .+.+++++|+||||||++|+.|.|.++++++++.+ .+.|+++|++ .+.+++. .|+|.++||++||+
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 4678888764 35688999999999999999999999999999875 5999999999 8888886 69999999999999
Q ss_pred CCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+|....+.|.++ -.+.+.|+.+++++
T Consensus 431 ~g~~~~v~Y~~~--------~R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSE--------KRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCC--------CcCHHHHHHHHHHh
Confidence 887554444322 12347788888764
No 54
>PTZ00062 glutaredoxin; Provisional
Probab=99.77 E-value=3.6e-18 Score=128.82 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=65.6
Q ss_pred CChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 9 HSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 9 ~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
.+.+++++.+..+ ...+|+.|||+||++|+.|.|++++++++++ .+.|++||++ |+|.++|||+||++|+
T Consensus 4 ~~~ee~~~~i~~~-~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 4 IKKEEKDKLIESN-TGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CCHHHHHHHHhcC-CCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCE
Confidence 5788999988632 2578999999999999999999999999986 7999999988 9999999999999999
Q ss_pred EEE
Q 032338 89 HIM 91 (142)
Q Consensus 89 ~~~ 91 (142)
.+.
T Consensus 74 ~i~ 76 (204)
T PTZ00062 74 LIN 76 (204)
T ss_pred EEe
Confidence 884
No 55
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=143.84 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=80.9
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
+.+.|++.|. .+..++|.||||||++|+.++|.+++.|..++. .+.+++||++++.++|.+|+|+++||+.+|+|
T Consensus 31 t~dnf~~~i~--~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 31 TKDNFKETIN--GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred ecccHHHHhc--cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 3677888885 468999999999999999999999999998865 68899999999999999999999999999999
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
|+. ..+|.|+ +..+.++.+|.+-
T Consensus 109 G~~-~~~Y~G~---------r~adgIv~wl~kq 131 (493)
T KOG0190|consen 109 GRS-AQDYNGP---------READGIVKWLKKQ 131 (493)
T ss_pred CCc-ceeccCc---------ccHHHHHHHHHhc
Confidence 996 2233332 2346666666553
No 56
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=5.8e-18 Score=126.68 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=67.1
Q ss_pred ChHHHHHHHHhc-CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 10 SGWAVDQAILTE-EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 10 ~~~~~~~~i~~~-~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+.++|.+.+... .+.+|||+|||+||++|+.|.|.|+++|+++. .+.|++||++.. +..|+|.++||+++|++|+
T Consensus 88 s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 88 SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTILVYRNGD 163 (192)
T ss_pred CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEEEEECCE
Confidence 466777655543 34699999999999999999999999999986 699999999864 6789999999999999999
Q ss_pred EEE
Q 032338 89 HIM 91 (142)
Q Consensus 89 ~~~ 91 (142)
.+.
T Consensus 164 ~v~ 166 (192)
T cd02988 164 IVK 166 (192)
T ss_pred EEE
Confidence 774
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.74 E-value=4.4e-17 Score=104.95 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEE
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~ 91 (142)
+|++.+.. +++++|.||++||++|+.+.+.+++++++ .+++.++.+|++++++++++|++.++||+++|.+|+.+.
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 46666653 38999999999999999999999999988 568999999999999999999999999999999998764
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=2.2e-17 Score=136.96 Aligned_cols=100 Identities=12% Similarity=0.233 Sum_probs=83.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+++|++.+.+ ++++|+|+|||+||++|+.+.|.++++++.+.+ .+.++++|++.+...++.++++++||+++|++|+
T Consensus 364 ~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 364 GNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred ccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCC
Confidence 6789887764 578999999999999999999999999998864 5889999999999999999999999999999887
Q ss_pred EEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 89 ~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
.+... ..|. .+.+++.++|++..
T Consensus 443 ~~~~~--------~~G~-~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 443 RTPIP--------YEGE-RTVEGFKEFVNKHA 465 (477)
T ss_pred cceeE--------ecCc-CCHHHHHHHHHHcC
Confidence 65322 2333 24578888888753
No 59
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.72 E-value=3.5e-17 Score=113.45 Aligned_cols=71 Identities=7% Similarity=0.168 Sum_probs=56.6
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-hHHhhcCcCC--CcEEEEEE-CCeEEE
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYELYD--PSTVMFFF-RNKHIM 91 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~~~I~~--~Pt~~~f~-~g~~~~ 91 (142)
.++++|+|+|||+||++|+.|.|.+.+..........|+.+|++.+. ...+.|++.+ +||++||. +|+.+.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 45789999999999999999999999977654334456667776664 4567899987 99999996 787764
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=1.1e-16 Score=132.71 Aligned_cols=98 Identities=16% Similarity=0.337 Sum_probs=80.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc---CceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
+.++|++++. ++++++|.|||+||++|+++.|.++++++.+. .++.+++||++++.+++++|+|.++||+++|++
T Consensus 38 ~~~~f~~~i~--~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 115 (477)
T PTZ00102 38 TDSTFDKFIT--ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNK 115 (477)
T ss_pred chhhHHHHHh--cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEEC
Confidence 4678888774 45799999999999999999999999988764 369999999999999999999999999999999
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
|+.+ .+. |. .+.++|.++++++.
T Consensus 116 g~~~--~y~--------g~-~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 116 GNPV--NYS--------GG-RTADGIVSWIKKLT 138 (477)
T ss_pred CceE--Eec--------CC-CCHHHHHHHHHHhh
Confidence 8866 222 22 23466777776653
No 61
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=1.1e-16 Score=131.51 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=70.9
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
+.++|++++. ++++++|.|||+||++|+.+.|.+.++++.+.+ ++.|++||++++++++++|+|.++||+++|++
T Consensus 7 ~~~~~~~~i~--~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 7 TKDNFDDFIK--SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CHHHHHHHHh--cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 4788999885 467999999999999999999999999988754 48999999999999999999999999999999
Q ss_pred CeE
Q 032338 87 NKH 89 (142)
Q Consensus 87 g~~ 89 (142)
|+.
T Consensus 85 g~~ 87 (462)
T TIGR01130 85 GED 87 (462)
T ss_pred Ccc
Confidence 986
No 62
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=1.2e-16 Score=106.88 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcC--CCcEEEEEEC--CeEEEEecCCCc
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFFR--NKHIMIDLGTGN 98 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~--~~Pt~~~f~~--g~~~~~~~g~~~ 98 (142)
++++++.|+++||++|+.+.|.++++++++++.+.|+.+|+++++.+++.|++. ++|+++++++ |+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~------- 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL------- 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC-------
Confidence 579999999999999999999999999999989999999999999999999999 9999999998 54441
Q ss_pred cccccccccchhHHHHHHHHH
Q 032338 99 NNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 99 ~~~~~~~~~~~~~l~~~l~~~ 119 (142)
..+..-+.+++.++++.+
T Consensus 85 ---~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 ---MPEEELTAESLEEFVEDF 102 (103)
T ss_pred ---CCccccCHHHHHHHHHhh
Confidence 111112457777777653
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.69 E-value=3.3e-16 Score=118.66 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCeEEEEEec---CCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCc
Q 032338 23 ERVVIIRFGH---DWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 98 (142)
Q Consensus 23 ~k~vvv~F~a---~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~ 98 (142)
+...++.|++ +||++|+.+.|+++++++++.+ .+.++.+|.+++++++++|+|.++||+++|++|+.+..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~------ 92 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI------ 92 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE------
Confidence 3455666888 9999999999999999999853 35577777789999999999999999999999987621
Q ss_pred cccccccccchhHHHHHHHHHH
Q 032338 99 NNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 99 ~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+..|. .+.++|.++|+.++
T Consensus 93 --~~~G~-~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 93 --RYTGI-PAGYEFAALIEDIV 111 (215)
T ss_pred --EEeec-CCHHHHHHHHHHHH
Confidence 33343 44677888888775
No 64
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.69 E-value=1.3e-16 Score=110.43 Aligned_cols=95 Identities=9% Similarity=0.160 Sum_probs=73.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEec--CCCH---HHHHHHHHHHHHHHHhcCceEEEEEeC-----CCchhHHhhcCcC--C
Q 032338 10 SGWAVDQAILTEEERVVIIRFGH--DWDD---TCMQMDEVLSSVAETIKNFAVIYLVDI-----SEVPDFNTMYELY--D 77 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a--~WC~---~C~~~~p~l~~la~~~~~~v~~~~vd~-----d~~~~l~~~~~I~--~ 77 (142)
+..+|++.|. +++.|+|.||| |||+ +|+.++|.+.+.+. .+.+++||+ .++.+|+++|+|+ +
T Consensus 7 ~~~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 7 DTVTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred ChhhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 4788999884 46899999999 9999 88888888776554 388999999 4678899999999 9
Q ss_pred CcEEEEEECCe-EEEEecCCCccccccccccchhHHHHHHHH
Q 032338 78 PSTVMFFFRNK-HIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 78 ~Pt~~~f~~g~-~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+||+++|++|+ .....|.|++ ++.+.|+.+|.+
T Consensus 81 yPTl~lF~~g~~~~~~~Y~G~~--------r~~~~lv~~v~~ 114 (116)
T cd03007 81 YPVIYLFHGGDFENPVPYSGAD--------VTVDALQRFLKG 114 (116)
T ss_pred CCEEEEEeCCCcCCCccCCCCc--------ccHHHHHHHHHh
Confidence 99999999985 2223443321 234777777765
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.69 E-value=3.1e-16 Score=100.83 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=65.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccc
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAL 106 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~ 106 (142)
|.-||++||++|+.+.|.+++++++++..+.+..||.+++++++++|++.++||+++ +|+. ++.|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----------~~~G~- 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----------EFIGA- 68 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----------EEecC-
Confidence 556999999999999999999999987779999999999999999999999999864 6763 22332
Q ss_pred cchhHHHHHHHHH
Q 032338 107 KDKQEFIDIVETV 119 (142)
Q Consensus 107 ~~~~~l~~~l~~~ 119 (142)
.+.+++.+.|+++
T Consensus 69 ~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 PTKEELVEAIKKR 81 (82)
T ss_pred CCHHHHHHHHHhh
Confidence 2467777777654
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.6e-17 Score=135.48 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=75.8
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+++|++++.+ ++|-|+|+||||||+||++++|++++||+.|++ +++++++|.+.|..- ...+.++||+.+|..|.
T Consensus 373 gknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 373 GKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTILFFPAGH 449 (493)
T ss_pred ecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEEEecCCC
Confidence 5789998875 678999999999999999999999999999976 699999999999643 34577799999999776
Q ss_pred EE-EEecCCCccccccccccchhHHHHHHHH
Q 032338 89 HI-MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 89 ~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
.. ++.|+|.+ +.++|..++.+
T Consensus 450 k~~pv~y~g~R---------~le~~~~fi~~ 471 (493)
T KOG0190|consen 450 KSNPVIYNGDR---------TLEDLKKFIKK 471 (493)
T ss_pred CCCCcccCCCc---------chHHHHhhhcc
Confidence 33 44554332 23566666654
No 67
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.68 E-value=2.7e-16 Score=134.27 Aligned_cols=104 Identities=16% Similarity=0.324 Sum_probs=82.3
Q ss_pred ccCChHHHHHHHHh--cCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCc----hhHHhhcCcCC
Q 032338 7 HLHSGWAVDQAILT--EEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEV----PDFNTMYELYD 77 (142)
Q Consensus 7 ~l~~~~~~~~~i~~--~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~----~~l~~~~~I~~ 77 (142)
++++.+++++.+.. .++|+|+|+|||+||++|+.|.+.+ +++.++++ ++.++++|++++ ++++++|++.+
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 45677888887754 3478999999999999999999875 67888876 688999999854 68899999999
Q ss_pred CcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 78 PSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 78 ~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+||+++|+ +|+.+.. .++.|.+ ++++|.+.++++
T Consensus 535 ~Pt~~~~~~~G~~i~~-------~r~~G~~-~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDAQGQEIPD-------ARVTGFM-DAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECCCCCCccc-------ccccCCC-CHHHHHHHHHHh
Confidence 99999997 6776411 2455554 478899888874
No 68
>PHA02125 thioredoxin-like protein
Probab=99.68 E-value=2.9e-16 Score=100.56 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=48.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.|||+||++|+.+.|.|+++. +.+++||.+++++++++|+|.++||++ +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEE
Confidence 67899999999999999997653 457899999999999999999999976 67665
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.67 E-value=2.5e-15 Score=105.30 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=63.9
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCchhHHhh--------cCcCCC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEVPDFNTM--------YELYDP 78 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~--------~~I~~~ 78 (142)
+.+.++++. .++|+|+|+|+|+||++|+.|.+.. .++++.+..+++++++|.++++++++. |++.++
T Consensus 4 ~~eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 355666655 4579999999999999999998743 367777666899999999998887653 589999
Q ss_pred cEEEEEE-CCeEEE
Q 032338 79 STVMFFF-RNKHIM 91 (142)
Q Consensus 79 Pt~~~f~-~g~~~~ 91 (142)
||++|+. +|+.+.
T Consensus 82 Pt~vfl~~~G~~~~ 95 (124)
T cd02955 82 PLNVFLTPDLKPFF 95 (124)
T ss_pred CEEEEECCCCCEEe
Confidence 9999996 467663
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.65 E-value=1e-15 Score=98.45 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=50.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+|||+||++|+.+.|.+++++++++..+.+++|| +.+.+.+|++.++||+++ ||+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE
Confidence 78999999999999999999999988778887777 344477899999999877 88766
No 71
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.65 E-value=1.7e-16 Score=124.87 Aligned_cols=70 Identities=16% Similarity=0.393 Sum_probs=63.7
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
..+..++|+||||||++|+++.|++.++.-++++ .+.+.+.|++..+.+|.+++|+++||+.||+++..+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~ 113 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI 113 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee
Confidence 4456999999999999999999999999887765 689999999999999999999999999999977765
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.63 E-value=1.2e-15 Score=125.46 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=78.8
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
+.+|++.+.+ .+++|+|.|||+||++|+.+.|.++++++.+.+ .+.|+++|++.+. +.. ++|.++||+++|++|
T Consensus 353 ~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 353 GKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred CcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 6778887764 578999999999999999999999999999987 6999999999875 344 999999999999988
Q ss_pred eEE-EEecCCCccccccccccchhHHHHHHHHHH
Q 032338 88 KHI-MIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 88 ~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+.. ... ..|. .+.+.|+++|++..
T Consensus 430 ~~~~~~~--------~~g~-~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 430 KKSEPVP--------YDGD-RTLEDFSKFIAKHA 454 (462)
T ss_pred CCcCceE--------ecCc-CCHHHHHHHHHhcC
Confidence 753 112 2222 34678888887753
No 73
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.62 E-value=5.5e-15 Score=115.92 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=69.6
Q ss_pred HHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-----------chhHHhhcCcCCCcEEEEEE
Q 032338 17 AILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-----------VPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.+.+..++++||+|||+||++|+.+.|++.+++++++ +.++.|++|. +..+++.|+|.++||+++++
T Consensus 160 ~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 3444557899999999999999999999999999986 5566666654 35789999999999999998
Q ss_pred C-CeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 86 R-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~-g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+ |+.+.. ...|.+ +.++|.+.+..+
T Consensus 238 ~~~~~v~~--------v~~G~~-s~~eL~~~i~~~ 263 (271)
T TIGR02740 238 PDPNQFTP--------IGFGVM-SADELVDRILLA 263 (271)
T ss_pred CCCCEEEE--------EEeCCC-CHHHHHHHHHHH
Confidence 6 555421 112333 467787777665
No 74
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=7.6e-15 Score=111.24 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=67.3
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCcccc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 101 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~ 101 (142)
++..+++.|||+||++|+.+.|.+++++.+. +.+.+.++|.+++++++++|+|.++||++++++|+..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~~----------- 199 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEEF----------- 199 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEEE-----------
Confidence 3445556699999999999999999999884 5788999999999999999999999999998777632
Q ss_pred ccccccchhHHHHHHHH
Q 032338 102 INWALKDKQEFIDIVET 118 (142)
Q Consensus 102 ~~~~~~~~~~l~~~l~~ 118 (142)
.| ..+.++|.++|+.
T Consensus 200 -~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 200 -VG-AYPEEQFLEYILS 214 (215)
T ss_pred -EC-CCCHHHHHHHHHh
Confidence 22 2345778777754
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.59 E-value=2e-14 Score=106.60 Aligned_cols=90 Identities=8% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-----------------------hHHhhcCcCCC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----------------------DFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------------------~l~~~~~I~~~ 78 (142)
.+++++|+|||+||++|+.+.|.+.+++++ .+.++.|+.++++ .++..|+|.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999998753 4677778765432 23447899999
Q ss_pred cEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhh
Q 032338 79 STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
Q Consensus 79 Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 124 (142)
|+.+++. +|+... +..|.+ +++++.+.++.+.+...
T Consensus 144 P~t~vid~~G~i~~---------~~~G~~-~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 144 PETFLIDGNGIIRY---------RHAGDL-NPRVWESEIKPLWEKYS 180 (185)
T ss_pred CeEEEECCCceEEE---------EEecCC-CHHHHHHHHHHHHHHHH
Confidence 9766665 676663 334444 35777777777765543
No 76
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=121.58 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=74.3
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEE----------------------------EeCCCchhHHhh
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYL----------------------------VDISEVPDFNTM 72 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~----------------------------vd~d~~~~l~~~ 72 (142)
++++|||+|||+||++|+.+.|.|++++++++. .+.|+. ++.|.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 689999999999999999999999999998863 344443 344567789999
Q ss_pred cCcCCCcEEEEE-ECCeEEEEecCCCccccccccccchhHHHHHHH-------HHHHhhhcCCceeec
Q 032338 73 YELYDPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE-------TVYRGARKGRGLVIA 132 (142)
Q Consensus 73 ~~I~~~Pt~~~f-~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~~g~~~~~~ 132 (142)
|+|.++||++++ ++|+.+. +..|.+ +.++|.++|+ .+......++|....
T Consensus 135 fgV~giPTt~IIDkdGkIV~---------~~~G~~-~~eeL~a~Ie~~~~~~~~~~~~~~~~~~q~~d 192 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQR---------IVKGSI-SEAQALALIRNPNADLGSLKHSYYKPDGQKKD 192 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEE---------EEeCCC-CHHHHHHHHHHhhhhhHHhhhhhccccCCccc
Confidence 999999999766 5787774 344444 3566777666 234455666666444
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.58 E-value=4e-15 Score=101.01 Aligned_cols=86 Identities=17% Similarity=0.380 Sum_probs=62.7
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHH---HHHhcCceEEEEEeCCCc--------------------hhHHhhcCcCC
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSV---AETIKNFAVIYLVDISEV--------------------PDFNTMYELYD 77 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~l---a~~~~~~v~~~~vd~d~~--------------------~~l~~~~~I~~ 77 (142)
.+++++++.||++||++|+++.+.+.+. ...+.+++.++.++++.. .++++.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4578999999999999999999998854 444555688888888754 35899999999
Q ss_pred CcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHH
Q 032338 78 PSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 78 ~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
+||++++. +|+.+. ++.|.+ +.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~---------~~~G~~-~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVY---------RIPGYL-SPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEE---------EEESS---HHHHHHHH
T ss_pred cCEEEEEcCCCCEEE---------EecCCC-CHHHHHhhC
Confidence 99999886 688773 566665 457777664
No 78
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.58 E-value=1.8e-14 Score=100.58 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCc------------------------hhHHhhcC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEV------------------------PDFNTMYE 74 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 74 (142)
.+++|+|+|||+||++|+.+.|.+.++.+++.+ .+.++.|+.|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999888753 466676666543 35778999
Q ss_pred cCCCcEEEEEE-CCeEE
Q 032338 75 LYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 75 I~~~Pt~~~f~-~g~~~ 90 (142)
|.++||+++++ +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999997 56655
No 79
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.58 E-value=1.8e-14 Score=103.52 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=57.2
Q ss_pred hcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--------ceEEEEEeCCCc-------------------------
Q 032338 20 TEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--------FAVIYLVDISEV------------------------- 66 (142)
Q Consensus 20 ~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~d~~------------------------- 66 (142)
..++++|+|+|||+||++|+.+.|.|.++.+++.+ .+.++.|+.|++
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 34689999999999999999999999998776543 477888877642
Q ss_pred hhHHhhcCcCCCcEEEEEE-CCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~-~g~~~ 90 (142)
..++..|++.++||++++. +|+.+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEE
Confidence 1467788999999999887 56665
No 80
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.57 E-value=2.1e-14 Score=100.69 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeCCCch-------------------------hHHhhc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDISEVP-------------------------DFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~-------------------------~l~~~~ 73 (142)
.+++|+|+|||+||++|+.+.|.+.++.+++++ .+.++.|+.+..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 579999999999999999999999999988765 4667777766532 467789
Q ss_pred CcCCCcEEEEEE-CCeEE
Q 032338 74 ELYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 74 ~I~~~Pt~~~f~-~g~~~ 90 (142)
+|.++||+++++ +|+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999997 46554
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.57 E-value=8.6e-15 Score=114.98 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc-----CceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 12 WAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK-----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~-----~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
++++.++. .+.+|+|.|||+||+-+++++|++++.++.++ +++++++||++.+..++++|.|..+||+.+|.|
T Consensus 4 ~N~~~il~--s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 4 ENIDSILD--SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccHHHhhc--cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 45677664 36899999999999999999999999887653 479999999999999999999999999999999
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHH
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
|......|-|. ++.+.|+++|++
T Consensus 82 G~~~~rEYRg~---------RsVeaL~efi~k 104 (375)
T KOG0912|consen 82 GEMMKREYRGQ---------RSVEALIEFIEK 104 (375)
T ss_pred cchhhhhhccc---------hhHHHHHHHHHH
Confidence 99775433322 234555665544
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.56 E-value=3.9e-14 Score=98.32 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=63.9
Q ss_pred CccCcccCC-hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEe------------------
Q 032338 2 SYLLPHLHS-GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVD------------------ 62 (142)
Q Consensus 2 ~~~l~~l~~-~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd------------------ 62 (142)
+|.++.+.+ ...+... +..+++++|+|||+||++|+.+.|.++++++++. +.++.|+
T Consensus 5 ~f~~~~~~g~~~~~~~~--~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 5 AFSLPALPGPDKTLTSA--DLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNP 80 (127)
T ss_pred CcccccccCCCccccHH--HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCC
Confidence 567777665 2445433 2357899999999999999999999999988752 5555554
Q ss_pred -----CCCchhHHhhcCcCCCcEEEEEE-CCeEEE
Q 032338 63 -----ISEVPDFNTMYELYDPSTVMFFF-RNKHIM 91 (142)
Q Consensus 63 -----~d~~~~l~~~~~I~~~Pt~~~f~-~g~~~~ 91 (142)
.|.+..+++.|++.++|+.+++. +|+.+.
T Consensus 81 ~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~ 115 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRY 115 (127)
T ss_pred CceEEECCcchHHHhcCCCCCCeEEEECCCceEEE
Confidence 34556788899999999666664 677663
No 83
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.54 E-value=5.5e-14 Score=92.82 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=53.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhc--CceEEEEEeCCCc-------------------------hhHHhhcCc
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIK--NFAVIYLVDISEV-------------------------PDFNTMYEL 75 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~-------------------------~~l~~~~~I 75 (142)
||+++|+|||+||++|+...|.+.++.++++ +++.++.|..|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 6788888887752 347788899
Q ss_pred CCCcEEEEEECC
Q 032338 76 YDPSTVMFFFRN 87 (142)
Q Consensus 76 ~~~Pt~~~f~~g 87 (142)
.++|+++++..+
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 999999998753
No 84
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.54 E-value=3.5e-14 Score=88.38 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.|+++||++|+.+.+.++++++.. +.+.+..+|++++++++++|++.++||++ .+|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~--i~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIV--INGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEE--ECCEEE
Confidence 56699999999999999999998764 47999999999999999999999999963 366654
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.53 E-value=1.1e-13 Score=101.47 Aligned_cols=86 Identities=12% Similarity=0.141 Sum_probs=63.5
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeC-----------------------CCchhHHhhcCcCCC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDI-----------------------SEVPDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~I~~~ 78 (142)
.+++++|+|||+||++|+.+.|.++++.++ ++.++.|+. |.+.++++.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 478999999999999999999999988764 355555553 334467778999999
Q ss_pred cEEEEE-ECCeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 79 STVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 79 Pt~~~f-~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
|+.+++ ++|+.+. +..|.+ +.+++.+.++++.
T Consensus 139 P~~~~id~~G~i~~---------~~~G~~-~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILY---------RHAGPL-NNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEE---------EEeccC-CHHHHHHHHHHHh
Confidence 976666 4677663 334443 4677888887764
No 86
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.53 E-value=1.3e-13 Score=99.85 Aligned_cols=86 Identities=13% Similarity=0.251 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc------------hhHH-hhc---CcCCCcEEEEEEC
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV------------PDFN-TMY---ELYDPSTVMFFFR 86 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~------------~~l~-~~~---~I~~~Pt~~~f~~ 86 (142)
++..+|+|||+||++|+++.|.+++++++++ +.++.|+.|+. .+.. ..| ++.++||.++++.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4577999999999999999999999999975 44555555532 2333 345 7899999999874
Q ss_pred -CeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 87 -NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 87 -g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
|+.+. .+..|.+ +++++.+.++.+
T Consensus 128 ~G~~i~--------~~~~G~~-s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAY--------PVLQGAV-DEAELANRMDEI 152 (153)
T ss_pred CCCEEE--------EEeeccc-CHHHHHHHHHHh
Confidence 55432 1234443 456777777654
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=2.3e-13 Score=123.04 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=69.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEe-----C----------------------CCchhHHhhc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNF-AVIYLVD-----I----------------------SEVPDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~-v~~~~vd-----~----------------------d~~~~l~~~~ 73 (142)
.+++|||+|||+||++|+.+.|.|+++.++|++. +.++.|. . |.+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5799999999999999999999999999999763 6666663 2 2245677899
Q ss_pred CcCCCcEEEEE-ECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 74 ELYDPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 74 ~I~~~Pt~~~f-~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
+|.++||++++ ++|+.+. ++.|.. .+++|.+.++.+..
T Consensus 499 ~V~~iPt~ilid~~G~iv~---------~~~G~~-~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIA---------QLSGEG-HRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEE---------EEeccc-CHHHHHHHHHHHHH
Confidence 99999999999 4788773 444433 35777777777644
No 88
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.48 E-value=2.6e-13 Score=93.32 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=61.9
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeC------------------
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDI------------------ 63 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~------------------ 63 (142)
+|.+..+++ +.+..... .+++++|.||++||++|+.+.|.+.++++++. +..+.+|.
T Consensus 2 ~f~l~~~~g-~~~~~~~~--~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~ 76 (123)
T cd03011 2 LFTATTLDG-EQFDLESL--SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFP 76 (123)
T ss_pred CceeecCCC-CEeeHHHh--CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCcc
Confidence 356666553 45554432 45899999999999999999999999988743 33333322
Q ss_pred ---CCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 64 ---SEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 64 ---d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|.+.++++.|+|.++|+++++.+|+..
T Consensus 77 ~~~d~~~~~~~~~~i~~~P~~~vid~~gi~ 106 (123)
T cd03011 77 VINDPDGVISARWGVSVTPAIVIVDPGGIV 106 (123)
T ss_pred EEECCCcHHHHhCCCCcccEEEEEcCCCeE
Confidence 355679999999999999999876643
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.47 E-value=6.2e-13 Score=88.04 Aligned_cols=66 Identities=8% Similarity=-0.006 Sum_probs=58.9
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+.+-+.-|+++||++|....+.++++++++. ++.+..+|+++.++++++|+|.++||++ .||+.+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~v--idG~~~ 76 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIF--LNGELF 76 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEE--ECCEEE
Confidence 45677888999999999999999999998864 7999999999999999999999999974 488876
No 90
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.46 E-value=3.6e-13 Score=113.53 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=80.9
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHH---HHHHHhcCceEEEEEeCCCc----hhHHhhcCcCCC
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLS---SVAETIKNFAVIYLVDISEV----PDFNTMYELYDP 78 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~----~~l~~~~~I~~~ 78 (142)
..+++..++++++.++.+|||+|||||+||-.||.+++..- +++.+.. +++..++|.++| .++.++|++-++
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 34566679999998877779999999999999999998864 3344434 799999998865 457789999999
Q ss_pred cEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 79 STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 79 Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
|+++||. +|++. ..+.|.+ +++.|++++++.
T Consensus 536 P~~~ff~~~g~e~---------~~l~gf~-~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEP---------EILTGFL-TADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcC---------cCCccee-cHHHHHHHHHHh
Confidence 9999998 56655 2366665 478899888764
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.9e-13 Score=110.46 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=67.1
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCC
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGT 96 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~ 96 (142)
..+.+++|+||||||++|+.+.|.+.+++..+.+.+.+..||++.+++++++|+|+++||+.+|.+| ...+++.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~ 119 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSG 119 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccC
Confidence 3567999999999999999999999999999998899999999999999999999999999999988 33334443
No 92
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.44 E-value=1.8e-12 Score=94.05 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=68.3
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------chhHHhhcCcCCC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------VPDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------~~~l~~~~~I~~~ 78 (142)
.+++++|.|||+||++|+...+.+.++.+++.+ .+.++.|+.+. +.++++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 468999999999999999999999999999875 47788887653 4577899999999
Q ss_pred cEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 79 STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 79 Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
|+++++. +|+.+. ...|.. +.+++.+.++++
T Consensus 140 P~~~lid~~g~i~~---------~~~g~~-~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVK---------VITGEM-TEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEE---------EEeCCC-CHHHHHHHHHHh
Confidence 9988886 465553 223332 357777777764
No 93
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.42 E-value=3e-12 Score=90.30 Aligned_cols=97 Identities=6% Similarity=0.007 Sum_probs=60.9
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCc-hhHHhhcCcCCCcEEEEEE-CCeEEEEecC
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVMFFF-RNKHIMIDLG 95 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~-~~l~~~~~I~~~Pt~~~f~-~g~~~~~~~g 95 (142)
.++|+|+|+|+++||++|++|...+ .++.+....++..+.+|.|.. ..+. ..+ ..+||++|+. +|+.+..-.|
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcccccc
Confidence 5689999999999999999999875 345555544666666765422 1111 233 6899999996 4665543344
Q ss_pred CCccccccccccchhHHHHHHHHH
Q 032338 96 TGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
...+.+......+.+.+.+-++++
T Consensus 99 y~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 99 RYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cccCccceeCcCcHHHHHHHHHHH
Confidence 444444444434444555555544
No 94
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.42 E-value=4.2e-12 Score=87.02 Aligned_cols=90 Identities=11% Similarity=0.157 Sum_probs=72.0
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHH-H--HHHHHHhcCceEEEEEeCC--CchhHHhhcCcCCCcEEEEEEC--CeEEEEe
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEV-L--SSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFR--NKHIMID 93 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d--~~~~l~~~~~I~~~Pt~~~f~~--g~~~~~~ 93 (142)
.++|+++|+|+++||++|+.|... + +++.+.+..++.++.+|++ +...+++.|++.++|+++|+.. |+.+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~-- 92 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK-- 92 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE--
Confidence 457999999999999999999764 4 4677777778889999987 4567999999999999999974 66663
Q ss_pred cCCCccccccccccchhHHHHHHHHHH
Q 032338 94 LGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
++.|.+ ++++|+..|+++.
T Consensus 93 -------~~~G~~-~~~~f~~~L~~~~ 111 (114)
T cd02958 93 -------VWSGNI-TPEDLLSQLIEFL 111 (114)
T ss_pred -------EEcCCC-CHHHHHHHHHHHH
Confidence 555554 4688998887753
No 95
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.42 E-value=1.9e-12 Score=89.95 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=57.4
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC---------------------------CchhHHhhc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS---------------------------EVPDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~ 73 (142)
.++++||+|||+||++|+...|.+.++.+++++ .+.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999975 5777777541 123466778
Q ss_pred CcCCCcEEEEEE-CCeEEEEec
Q 032338 74 ELYDPSTVMFFF-RNKHIMIDL 94 (142)
Q Consensus 74 ~I~~~Pt~~~f~-~g~~~~~~~ 94 (142)
++.++|+.+++. +|+.+....
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEe
Confidence 889999998885 576664333
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.41 E-value=3.1e-12 Score=85.05 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=67.3
Q ss_pred ccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc-CceEEEEEeCCCc---------------
Q 032338 3 YLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK-NFAVIYLVDISEV--------------- 66 (142)
Q Consensus 3 ~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~--------------- 66 (142)
|.+..++ ++.++.. +..+++++|.||++||++|+...+.+.++.+++. +.+.++.|+.+.+
T Consensus 2 ~~~~~~~-g~~~~~~--~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 2 FSLPDLD-GKPVSLS--DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred ccccCCC-CCEeehH--HcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 4455544 2344332 2236899999999999999999999999999985 4689999999886
Q ss_pred --------hhHHhhcCcCCCcEEEEEE-CCeEE
Q 032338 67 --------PDFNTMYELYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 67 --------~~l~~~~~I~~~Pt~~~f~-~g~~~ 90 (142)
..+++.|++.++|+++++. +|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEE
Confidence 7899999999999998886 45554
No 97
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.40 E-value=1.5e-12 Score=97.00 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=58.6
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEe-------------C-----
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVD-------------I----- 63 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd-------------~----- 63 (142)
+|.++.++ ++.+.-.-....+++++|+|||+||++|+.+.|.+.++.++...++.++..| .
T Consensus 54 ~f~l~d~~-G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~ 132 (189)
T TIGR02661 54 IFNLPDFD-GEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERY 132 (189)
T ss_pred CcEecCCC-CCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCccee
Confidence 35566544 3333221012357899999999999999999999999987754344444321 1
Q ss_pred CCchhHHhhcCcCCCcEEEEEE-CCeEE
Q 032338 64 SEVPDFNTMYELYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 64 d~~~~l~~~~~I~~~Pt~~~f~-~g~~~ 90 (142)
....++++.|++.++|+.+++. +|+..
T Consensus 133 ~~~~~i~~~y~v~~~P~~~lID~~G~I~ 160 (189)
T TIGR02661 133 VVSAEIGMAFQVGKIPYGVLLDQDGKIR 160 (189)
T ss_pred echhHHHHhccCCccceEEEECCCCeEE
Confidence 1135678899999999987775 46554
No 98
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.40 E-value=3.8e-12 Score=89.90 Aligned_cols=100 Identities=6% Similarity=0.095 Sum_probs=79.5
Q ss_pred hHHHHHHHHhcCCCeEEEEEec--CCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 11 GWAVDQAILTEEERVVIIRFGH--DWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a--~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
..+++..+.. +...+|.|-. .-++.+--..-+|++++++|.+ ++.|++||+|++++++.+|+|.++||++||+||
T Consensus 24 ~~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 24 ESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred cccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 4677777743 3344443432 3457778889999999999974 599999999999999999999999999999999
Q ss_pred eEEEEecCCCccccccccccchhHHHHHHHHHHHh
Q 032338 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 88 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 122 (142)
+.+ .++.|. .+++++.++|++++..
T Consensus 102 k~v---------~~i~G~-~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 102 NYR---------GVLNGI-HPWAELINLMRGLVEP 126 (132)
T ss_pred EEE---------EEEeCc-CCHHHHHHHHHHHhcC
Confidence 999 466664 4579999999987544
No 99
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.39 E-value=2.7e-12 Score=83.19 Aligned_cols=70 Identities=23% Similarity=0.443 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.+.++. .++|+|+|+|+|+||++|+.|...+ .++.+.+.++++.+.+|.++...... +...++|+++|+.
T Consensus 9 al~~A~--~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAK--KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHH--HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHH--HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 344443 3579999999999999999999888 46666566689999999987765443 2227799998875
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.39 E-value=5.9e-13 Score=90.42 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEe---CCCchhHHhhcCcCCCcEE
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVD---ISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd---~d~~~~l~~~~~I~~~Pt~ 81 (142)
+++++|+||++||++|+.+.|.++++++++.+.+.++.+. .++..++++++++..+|++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 7899999999999999999999999988876666666552 2233345556666555553
No 101
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.33 E-value=7.8e-12 Score=82.16 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC-CchhHHhhcC--cCCCcEEEEEECCeEE
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYE--LYDPSTVMFFFRNKHI 90 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~--I~~~Pt~~~f~~g~~~ 90 (142)
+++++++||++||++|+.+.|.+.++++++...+.+..+|.. .++.++..|+ +..+|+++++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 679999999999999999999999999998767899999997 8899999999 9999999988888764
No 102
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.32 E-value=1.9e-11 Score=90.61 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=60.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-------------hhHHhhcCc--CCCcEEEEEE-CCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-------------PDFNTMYEL--YDPSTVMFFF-RNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-------------~~l~~~~~I--~~~Pt~~~f~-~g~~~ 90 (142)
+|.|||+||++|++..|.+.+++++++ +.++.|+.|.. ..+.+.|++ .++||.+++. +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 667999999999999999999999985 55555555432 236678885 6999998885 56553
Q ss_pred EEecCCCccccccccccchhHHHHHHHHHHHh
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 122 (142)
. ....|.+ +.+++.+.++++++.
T Consensus 151 ~--------~~~~G~~-~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 L--------PLLQGAT-DAAGFMARMDTVLQM 173 (181)
T ss_pred E--------EEEECCC-CHHHHHHHHHHHHhh
Confidence 2 1233333 457787878777654
No 103
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.3e-11 Score=100.77 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=78.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc--CceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
...++..+.. .+..++|.||||||++|+.+.|.+++++..+. ..+.+..+|++....+++.++|+..||+++|.+|.
T Consensus 151 ~~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 151 KDNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred ccchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCC
Confidence 3455555543 46799999999999999999999999999885 57999999999999999999999999999999887
Q ss_pred E-EEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 89 H-IMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 89 ~-~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
. .. .+ ...++.+.+.++++....
T Consensus 230 ~~~~-~~---------~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 230 EDIY-YY---------SGLRDSDSIVSFVEKKER 253 (383)
T ss_pred cccc-cc---------cccccHHHHHHHHHhhcC
Confidence 7 31 11 122344667777766533
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.26 E-value=7e-11 Score=83.64 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred cCCCeEEEEEecC-CCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------chhHHhhcCcC-
Q 032338 21 EEERVVIIRFGHD-WDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------VPDFNTMYELY- 76 (142)
Q Consensus 21 ~~~k~vvv~F~a~-WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~- 76 (142)
..+++++|+||++ ||++|+...|.+.++.+++++ .+.++.|..+. +..+++.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3579999999999 999999999999999888765 46666665443 35678888888
Q ss_pred --------CCcEEEEEE-CCeEEEEecCC
Q 032338 77 --------DPSTVMFFF-RNKHIMIDLGT 96 (142)
Q Consensus 77 --------~~Pt~~~f~-~g~~~~~~~g~ 96 (142)
++|+++++. +|+.+....|.
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 999988776 57766544443
No 105
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3.8e-12 Score=106.93 Aligned_cols=77 Identities=13% Similarity=0.277 Sum_probs=66.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEeC--CCchhHHhhcCcCCCcEEEEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN---FAVIYLVDI--SEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~---~v~~~~vd~--d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+.++|+.++... .+-.+|+||++|||+|+.++|.+.++++.+.+ -+.++.||+ +.|..++++|+|+.+||+.+|
T Consensus 45 d~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 45 DVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred ehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeec
Confidence 467888888754 46789999999999999999999999998754 477889996 568899999999999999999
Q ss_pred ECC
Q 032338 85 FRN 87 (142)
Q Consensus 85 ~~g 87 (142)
..+
T Consensus 124 ~~~ 126 (606)
T KOG1731|consen 124 PPD 126 (606)
T ss_pred CCc
Confidence 755
No 106
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.7e-11 Score=91.55 Aligned_cols=116 Identities=15% Similarity=0.299 Sum_probs=88.2
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCc------CCCc
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYEL------YDPS 79 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I------~~~P 79 (142)
..++.+.+++.+.-+....++|+|+|.|.+.|+..+|++.++..+|.. ...|.+||+-..++.+++|+| +.+|
T Consensus 128 yf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 128 YFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred eecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCC
Confidence 456788888888767778999999999999999999999999999965 688999999999999999999 5699
Q ss_pred EEEEEECCeEEEEecCCCcccc-ccccccchhHHHHH--HHHHHHhh
Q 032338 80 TVMFFFRNKHIMIDLGTGNNNK-INWALKDKQEFIDI--VETVYRGA 123 (142)
Q Consensus 80 t~~~f~~g~~~~~~~g~~~~~~-~~~~~~~~~~l~~~--l~~~~~~~ 123 (142)
|+++|++|+++...=......+ ....+ +++.+... |+.+|..+
T Consensus 208 T~ilFq~gkE~~RrP~vd~~gra~s~~f-Seenv~~~F~Ln~Ly~e~ 253 (265)
T KOG0914|consen 208 TYILFQKGKEVSRRPDVDVKGRAVSFPF-SEENVCQHFELNRLYLEA 253 (265)
T ss_pred eEEEEccchhhhcCccccccCCcccccc-cHHHHHHHhcHHHHHHHH
Confidence 9999999998743111111222 22333 34545544 45566555
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.23 E-value=2.4e-10 Score=83.32 Aligned_cols=102 Identities=8% Similarity=0.146 Sum_probs=71.2
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC-----------------------------chhHHh
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE-----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-----------------------------~~~l~~ 71 (142)
.++++||.||++||+.|....+.+.++.+++.+ ++.|+.|..|. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 568999999999999999999999999999863 68888887653 234566
Q ss_pred hcCcCCCcEEEEEE-CCeEEEEecCCCcccccc-ccccchhHHHHHHHHHHHhhhc
Q 032338 72 MYELYDPSTVMFFF-RNKHIMIDLGTGNNNKIN-WALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 72 ~~~I~~~Pt~~~f~-~g~~~~~~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 125 (142)
.|++..+|+++++. +|+.+. .+.....+.. ..-.+.+++.+.|+.+..+..-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVY--RGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEE--eecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 88899999998886 455442 1111111100 0112457788888887766543
No 108
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.18 E-value=2.1e-10 Score=86.26 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=37.8
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 63 (142)
.+++|||+|||+||++|+...|.|.++.+++++ .+.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 578999999999999999999999999999975 478888875
No 109
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.17 E-value=1.2e-10 Score=86.62 Aligned_cols=67 Identities=4% Similarity=0.071 Sum_probs=48.8
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEE------EEEeCCC-----------------------------c
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVI------YLVDISE-----------------------------V 66 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~------~~vd~d~-----------------------------~ 66 (142)
.||+++|+|||+||++|++..|.+++++++ ++.+ .-||.|+ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 489999999999999999999999999764 2333 4445443 3
Q ss_pred hhHHhhcCcCCCcEE-EEEE-CCeEEE
Q 032338 67 PDFNTMYELYDPSTV-MFFF-RNKHIM 91 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~-~~f~-~g~~~~ 91 (142)
..++..|++.++|+. ++++ +|+.+.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~ 161 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKF 161 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEE
Confidence 345668888999777 4554 466653
No 110
>smart00594 UAS UAS domain.
Probab=99.17 E-value=4.8e-10 Score=77.98 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=64.8
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCC--chhHHhhcCcCCCcEEEEEEC-CeEEEEec
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFR-NKHIMIDL 94 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~--~~~l~~~~~I~~~Pt~~~f~~-g~~~~~~~ 94 (142)
.++|+++|+|+++||++|+.|...+ .++.+.+..++.+..+|++. ..++++.|++.++|++.++.. |.......
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 4578999999999999999987654 45666666678888888764 457899999999999999964 31110000
Q ss_pred CCCccccccccccchhHHHHHH
Q 032338 95 GTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 95 g~~~~~~~~~~~~~~~~l~~~l 116 (142)
..++.|.+. .++|+..|
T Consensus 105 ----~~~~~G~~~-~~~l~~~l 121 (122)
T smart00594 105 ----VGVVEGEIS-PEELMTFL 121 (122)
T ss_pred ----eccccCCCC-HHHHHHhh
Confidence 024555543 57777655
No 111
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.13 E-value=7e-10 Score=82.46 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=70.8
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC-------------------------chhHHhhcC
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE-------------------------VPDFNTMYE 74 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 74 (142)
.++++||.|| ++||++|....|.+.++.+++.+ .+.++.|..|. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999888753 45555555442 335677888
Q ss_pred cC------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 75 LY------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 75 I~------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
+. ..|+.+++. +|+............ .+.+++++.|+++......+...|-+-|.+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~------~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 172 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG------RDASELLRKIKAAQYVAAHPGEVCPAKWKE 172 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCC------CCHHHHHHHHHHhhhHHhcCCeeeCCCCCc
Confidence 86 358777775 576664433211111 245778888876555333323455444443
No 112
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=83.95 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=57.2
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEeCCCc-------------------------hhHHhhc
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNF---AVIYLVDISEV-------------------------PDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~---v~~~~vd~d~~-------------------------~~l~~~~ 73 (142)
.||+|.++|.|.||+|||.+.|.+.++.++++.+ +.++.|+.|.+ +++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999999998887765 66777766642 4577799
Q ss_pred CcCCCcEEEEEEC-CeEE
Q 032338 74 ELYDPSTVMFFFR-NKHI 90 (142)
Q Consensus 74 ~I~~~Pt~~~f~~-g~~~ 90 (142)
+|.++|++++.+. |..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 9999999998874 6555
No 113
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.12 E-value=2e-10 Score=72.56 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=44.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhc-----CcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-----ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~-----~I~~~Pt~~~f~~g~~~ 90 (142)
++-||++||++|+++.+.+.++.. .+-.+|+++++..++.+ ++.++|++ ++.+|+.+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 456999999999999999876643 34478888887766553 89999996 56777765
No 114
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.12 E-value=6.6e-10 Score=85.67 Aligned_cols=43 Identities=16% Similarity=-0.036 Sum_probs=38.1
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS 64 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 64 (142)
.+++|||+|||+||++|+...|.|.++.+++++ .+.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 478999999999999999999999999999975 4788888763
No 115
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.08 E-value=8.3e-10 Score=64.92 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=51.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh---hcCcCCCcEEEEEECC
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---MYELYDPSTVMFFFRN 87 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~I~~~Pt~~~f~~g 87 (142)
++.||++||++|+.+.+.+.++ +....++.+..+|++......+ .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4679999999999999999998 4445589999999998877654 8899999999888776
No 116
>PLN02412 probable glutathione peroxidase
Probab=99.08 E-value=1.5e-09 Score=79.30 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=44.7
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS 64 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 64 (142)
+|.++.++ ++.+.. .+..+++|||+|||+||++|+...|.|.++.+++++ .+.++-|+.+
T Consensus 11 df~l~d~~-G~~v~l--~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 11 DFTVKDIG-GNDVSL--NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred ceEEECCC-CCEEeH--HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 35555543 333322 223579999999999999999999999999999976 4888888753
No 117
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.05 E-value=1.4e-09 Score=69.88 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=47.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-----hHHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.|+++||++|+.+.+.++++. ..+.+.++.+|.+++. .+.+.+++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 46699999999999999999887 3334778888877554 26677899999995 6678876
No 118
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.02 E-value=2.6e-09 Score=66.28 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=42.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh----HHhhcCcCCCcEEEEEECCeE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+..|+++||++|+.+.+.+++. .+.+..+|+++++. +.+.+++.++|++++ +|+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKI 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEE
Confidence 3459999999999999888652 47788899987754 456799999999765 3554
No 119
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.01 E-value=8.2e-09 Score=75.35 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHH-H--HHHHHHhcCceEEEEEeCCCchhHHhhc--------CcCCCc
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEV-L--SSVAETIKNFAVIYLVDISEVPDFNTMY--------ELYDPS 79 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~~~~--------~I~~~P 79 (142)
.+.++++- .++|||+|.++++||..|+.|... + .++++.+..+++-++||.++.+++...| +..+.|
T Consensus 27 ~ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 27 EEALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 45566654 357999999999999999999864 4 3677777778899999999999999888 778999
Q ss_pred EEEEEE-CCeEE
Q 032338 80 TVMFFF-RNKHI 90 (142)
Q Consensus 80 t~~~f~-~g~~~ 90 (142)
+.+|.. +|+.+
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 999887 46655
No 120
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.00 E-value=3.3e-09 Score=76.07 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=45.0
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 63 (142)
+|.++.+. ++.+.. .+..+|+|||.|||+||++|+...|.+.++.+++++ .+.++.|++
T Consensus 4 ~f~l~~~~-G~~~~l--~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 4 SFEVKDAR-GRTVSL--EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred cceeECCC-CCEecH--HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 45566543 344432 223578999999999999999999999999999975 678888874
No 121
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.97 E-value=2.2e-09 Score=76.96 Aligned_cols=41 Identities=17% Similarity=0.019 Sum_probs=36.5
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 63 (142)
.+++|+|+|||+||+ |+...|.+.++.+++++ .+.++.|..
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 579999999999999 99999999999999964 588888865
No 122
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.97 E-value=1e-08 Score=78.03 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC-----------CchhHHhhcCcCCCcEEEE
Q 032338 15 DQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS-----------EVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 15 ~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-----------~~~~l~~~~~I~~~Pt~~~ 83 (142)
++.|.+..++.=++.||.+.|+.|+.+.|++..++++++ +.++-|++| .+..+++.++|..+|++++
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 344444456778899999999999999999999999986 566666666 4678999999999999988
Q ss_pred EECCe--EEEEecCCCccccccccccchhHHHHHH
Q 032338 84 FFRNK--HIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 84 f~~g~--~~~~~~g~~~~~~~~~~~~~~~~l~~~l 116 (142)
+..+. ... +..++-+.++|.+.|
T Consensus 190 v~~~~~~~~p----------v~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 190 VNPNTKKWYP----------VSQGFMSLDELEDRI 214 (215)
T ss_pred EECCCCeEEE----------EeeecCCHHHHHHhh
Confidence 87543 333 332334567776653
No 123
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.95 E-value=1.2e-08 Score=76.05 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=76.7
Q ss_pred cCCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC-------------------------chhHHhhc
Q 032338 21 EEERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE-------------------------VPDFNTMY 73 (142)
Q Consensus 21 ~~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~ 73 (142)
..++++||.|| ++||+.|....+.+.++.+++.+ ++.++-|..|. +.++++.|
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 35789999999 99999999999999999988853 45566555443 34677888
Q ss_pred Cc----CCC--cEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCch
Q 032338 74 EL----YDP--STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYS 137 (142)
Q Consensus 74 ~I----~~~--Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~ 137 (142)
++ .++ |+.+++. +|+.......... .-++.+++++.|+.+-....+|-..|-+-|.+.
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~------~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~~ 173 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEG------IGRDASDLLRKIKAAQYVASHPGEVCPAKWKEG 173 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCC------CCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCcC
Confidence 88 356 8888886 5665543322111 113568899999887665566556666666543
No 124
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.91 E-value=2.9e-08 Score=72.55 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------------chhHHh
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 71 (142)
.++++||.|| ++||++|....+.+.++++++.+ ++.++.|..|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999998864 46666665543 224556
Q ss_pred hcCcC------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 72 MYELY------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 72 ~~~I~------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
.|++. ..|+.+++. +|+......+..... ++.+++++.|+.+....
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~------~~~~~il~~l~~~~~~~ 160 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVG------RSVDETLRVLDALQFVE 160 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCC------CCHHHHHHHHHHhhhhh
Confidence 67765 567877776 465554333221111 23577888887763333
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.90 E-value=2.2e-08 Score=64.05 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=55.6
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccc
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 108 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~ 108 (142)
.+++++|+.|..+...+++++++++ +.+-.+|.++.+++ .+|+|.++|++ +.||+.. ..|.+++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~~~-----------~~G~~p~ 67 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGKVV-----------FVGRVPS 67 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEE--EETTEEE-----------EESS--H
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEE--EECCEEE-----------EEecCCC
Confidence 3467889999999999999999873 66667777777777 89999999996 5588754 4555677
Q ss_pred hhHHHHHHH
Q 032338 109 KQEFIDIVE 117 (142)
Q Consensus 109 ~~~l~~~l~ 117 (142)
.++|.++|+
T Consensus 68 ~~el~~~l~ 76 (76)
T PF13192_consen 68 KEELKELLE 76 (76)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888887764
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.1e-08 Score=72.49 Aligned_cols=90 Identities=17% Similarity=0.343 Sum_probs=71.1
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCC----------------chhHHhhcCcCCCcEE
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISE----------------VPDFNTMYELYDPSTV 81 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~----------------~~~l~~~~~I~~~Pt~ 81 (142)
..++-.++.|-++.|++|.+|+..+ +++.+-+.+++.++.++++. ..+||+.|+|++.||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 4578999999999999999998876 46777777788888888653 2489999999999999
Q ss_pred EEEEC-CeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 82 MFFFR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 82 ~~f~~-g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+||+. |+.+ ..+-|.++ .++|+.+++=+-
T Consensus 120 vFfdk~Gk~I---------l~lPGY~p-pe~Fl~vlkYVa 149 (182)
T COG2143 120 VFFDKTGKTI---------LELPGYMP-PEQFLAVLKYVA 149 (182)
T ss_pred EEEcCCCCEE---------EecCCCCC-HHHHHHHHHHHH
Confidence 99974 6666 35667776 577887776543
No 127
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.3e-09 Score=81.21 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=71.9
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+..+....+| +. +.++++++.|||+||.+|.+|..+++.+++.. .++.+++.+.+..+++++.+.+..+|++.++
T Consensus 3 v~~i~~~~~f---~~-~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 3 VQFIVFQEQF---LD-QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred ceeehhHHHH---HH-hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence 4556667777 22 36789999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ECCeEE
Q 032338 85 FRNKHI 90 (142)
Q Consensus 85 ~~g~~~ 90 (142)
..|+.+
T Consensus 78 ~~~~~v 83 (227)
T KOG0911|consen 78 FLGEKV 83 (227)
T ss_pred ecchhh
Confidence 888877
No 128
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.85 E-value=1.3e-08 Score=71.80 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=49.3
Q ss_pred HHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhc---CcCCCcEEEEEEC-CeEE
Q 032338 17 AILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY---ELYDPSTVMFFFR-NKHI 90 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~I~~~Pt~~~f~~-g~~~ 90 (142)
.+.....+.-++.|..+|||.|+..-|++.++++.. +++.+--+..|+++++.++| +...+||++|+.+ |+.+
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 344445567888899999999999999999999984 47788888888888876654 5788999999965 5665
No 129
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.84 E-value=5.5e-08 Score=70.99 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=36.3
Q ss_pred CCCeEEEEEecCC-CHHHHHHHHHHHHHHHHhcCceEEEEEeCCC
Q 032338 22 EERVVIIRFGHDW-DDTCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~a~W-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~ 65 (142)
.++++||.||++| |++|....|.+.++++++. ++.++.|..|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 4789999999999 9999999999999998874 66777666553
No 130
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.83 E-value=3.6e-08 Score=67.35 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=39.5
Q ss_pred CCCeEEEEEecC-CCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCc
Q 032338 22 EERVVIIRFGHD-WDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEV 66 (142)
Q Consensus 22 ~~k~vvv~F~a~-WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~ 66 (142)
.+++++|.||++ ||+.|+...+.+.++.++++. ++.++.|..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 568999999999 999999999999999998875 688888887653
No 131
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.82 E-value=1.7e-08 Score=79.15 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=66.0
Q ss_pred cccCChHHHHHHHHhc-CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 6 PHLHSGWAVDQAILTE-EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~-~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
-+|.+++.|-++|... .+..|||.||-+.++.|+.|...|..||.+|. .+.|++|..+..+ +...|.+.++||+++|
T Consensus 128 ~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtllvY 205 (265)
T PF02114_consen 128 YEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTLLVY 205 (265)
T ss_dssp EE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEEEEE
T ss_pred EEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEEEEE
Confidence 3566777777766542 24589999999999999999999999999987 7999999998776 7888999999999999
Q ss_pred ECCeEEE
Q 032338 85 FRNKHIM 91 (142)
Q Consensus 85 ~~g~~~~ 91 (142)
++|..+.
T Consensus 206 k~G~l~~ 212 (265)
T PF02114_consen 206 KNGDLIG 212 (265)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 9998764
No 132
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.82 E-value=8.8e-08 Score=72.88 Aligned_cols=113 Identities=8% Similarity=0.027 Sum_probs=73.5
Q ss_pred CCCeEE-EEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCc---------------------------hhHHhh
Q 032338 22 EERVVI-IRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEV---------------------------PDFNTM 72 (142)
Q Consensus 22 ~~k~vv-v~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 72 (142)
.+++++ +.||++||+.|....+.|.++++++.. ++.++.+.+|.. .++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 488999999999999999999999853 566776666532 245566
Q ss_pred cCcC-------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCchhhhc
Q 032338 73 YELY-------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYR 141 (142)
Q Consensus 73 ~~I~-------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 141 (142)
|++. ..|+.+++. +|+...+..+..... ++.++++..|+.+.....+ ...|-+=|++.|++|
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g------r~~~eilr~l~alq~~~~~-~~~~P~~w~~~~~~g 181 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIG------RNIDEILRAIRALQLVDKA-GVVTPANWPNNELIG 181 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCC------CCHHHHHHHHHHhhhhhhc-CCCcCCCCCCCCCCC
Confidence 7753 368777776 455544333221111 3568899988886543334 366666676655544
No 133
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.81 E-value=5.3e-08 Score=63.30 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=48.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch----hHHhhcC--cCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYE--LYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~--I~~~Pt~~~f~~g~~~ 90 (142)
|+.|+.+||++|++....|+++..++ ..+.+..+|+++++ ++.+..+ +.++|++ |.+|+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~i 69 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHI 69 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEE
Confidence 56699999999999999999998875 36788888888653 4555444 5899994 5688876
No 134
>PRK15000 peroxidase; Provisional
Probab=98.80 E-value=1.3e-07 Score=71.15 Aligned_cols=109 Identities=9% Similarity=0.069 Sum_probs=75.1
Q ss_pred CCCeEEEEEec-CCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------------chhHHh
Q 032338 22 EERVVIIRFGH-DWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~a-~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 71 (142)
.++++||.||+ +||+.|....+.|.++.+++.. ++.++.|..|. +.++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 5999999999999999998864 56666666552 224556
Q ss_pred hcCcC------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCch
Q 032338 72 MYELY------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYS 137 (142)
Q Consensus 72 ~~~I~------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~ 137 (142)
.|++. ++|+.+++. +|+......+...-. ++.++++..|+.+.....+| ..|-+-|+|.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g------r~~~eilr~l~al~~~~~~~-~~~p~~w~~g 178 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG------RNIDEMLRMVDALQFHEEHG-DVCPAQWEKG 178 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC------CCHHHHHHHHHHhhhHHhcC-CCcCCCCCCC
Confidence 67776 688888886 566554333221111 35688888888766655554 5666666653
No 135
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.80 E-value=6e-08 Score=67.78 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------chhHHhhcCcCCC
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------VPDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~I~~~ 78 (142)
.+++++|.|| +.||+.|....+.+.++.+++.+ .+.++.|..+. +..+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 58999999999999999888754 46666665443 3457777888877
Q ss_pred ---------cEEEEEE-CCeEEE
Q 032338 79 ---------STVMFFF-RNKHIM 91 (142)
Q Consensus 79 ---------Pt~~~f~-~g~~~~ 91 (142)
|+.+++. +|+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~ 124 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVK 124 (140)
T ss_pred cccccCCcceeEEEECCCCEEEE
Confidence 8877776 466654
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.78 E-value=9.3e-08 Score=67.22 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=36.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchh
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPD 68 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~ 68 (142)
++.||+.||++||++|+...|.|.++.+++.+ .+.++.|..+....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 34555555799999999999999999999854 68888888776543
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.77 E-value=1.4e-07 Score=73.51 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=71.2
Q ss_pred HHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-----------hhHHhhcCcCCCcEEEEE
Q 032338 16 QAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-----------PDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 16 ~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-----------~~l~~~~~I~~~Pt~~~f 84 (142)
+.|.+..++.-++.||.+-|++|+++.|++..++++++ +.++-|++|.. ...+++++|..+|++++.
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 34444445677888999999999999999999999987 56666665543 558999999999999888
Q ss_pred ECC--eEEEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 85 FRN--KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 85 ~~g--~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
..+ +... +..++-+.++|.+.+-.+...-
T Consensus 221 ~~~t~~~~p----------v~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 221 NPKSQKMSP----------LAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred ECCCCcEEE----------EeeccCCHHHHHHHHHHHHhcc
Confidence 754 3332 3333446789998887765543
No 138
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.77 E-value=5.1e-08 Score=72.60 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=71.8
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
++.|+.+|=+.... ..-||+.||-+.-..|+.|..-|+.+|+.+- ...|++||++..|=++..++|..+|++.+|+|
T Consensus 70 ev~~Ekdf~~~~~k--S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~ 146 (211)
T KOG1672|consen 70 EVASEKDFFEEVKK--SEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKN 146 (211)
T ss_pred EeccHHHHHHHhhc--CceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEc
Confidence 56777777666643 3578889999999999999999999999865 68899999999999999999999999999999
Q ss_pred CeEEE
Q 032338 87 NKHIM 91 (142)
Q Consensus 87 g~~~~ 91 (142)
|..+.
T Consensus 147 g~~~D 151 (211)
T KOG1672|consen 147 GKTVD 151 (211)
T ss_pred CEEEE
Confidence 98763
No 139
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.76 E-value=1e-07 Score=67.11 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCeEEEEEecCC-CHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-----------------------hhHHhhcCcCC
Q 032338 22 EERVVIIRFGHDW-DDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-----------------------PDFNTMYELYD 77 (142)
Q Consensus 22 ~~k~vvv~F~a~W-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-----------------------~~l~~~~~I~~ 77 (142)
.++++||.||+.| |++|+...|.+.++.+++. ++.++.|+.|.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999999 6999999999999999985 677887777531 34556677643
Q ss_pred ------CcEEEEEE-CCeEEEEecC
Q 032338 78 ------PSTVMFFF-RNKHIMIDLG 95 (142)
Q Consensus 78 ------~Pt~~~f~-~g~~~~~~~g 95 (142)
.|+..++. +|+.+....|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEEC
Confidence 57766665 5666654443
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.74 E-value=1.2e-07 Score=65.97 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=54.1
Q ss_pred ChHHHHHHHHh--cCCCeEEEEEecC-------CCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-----c--hhHHh--
Q 032338 10 SGWAVDQAILT--EEERVVIIRFGHD-------WDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-----V--PDFNT-- 71 (142)
Q Consensus 10 ~~~~~~~~i~~--~~~k~vvv~F~a~-------WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-----~--~~l~~-- 71 (142)
+=++|.+.+.. .++++++|.|+++ |||.|+...|++++.-+....+..++.|.+-+ + -.+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 34567777764 4568999999865 99999999999998877766678888777632 2 23544
Q ss_pred hcCcCCCcEEEEEECCeEE
Q 032338 72 MYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 72 ~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++.++||++-+..++.+
T Consensus 84 ~~~l~~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGERL 102 (119)
T ss_dssp CC---SSSEEEECTSS-EE
T ss_pred eeeeeecceEEEECCCCcc
Confidence 6999999999888766443
No 141
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.74 E-value=8.3e-08 Score=71.02 Aligned_cols=42 Identities=10% Similarity=-0.141 Sum_probs=34.7
Q ss_pred CCCeE-EEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 032338 22 EERVV-IIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~v-vv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 63 (142)
.+++| ++.|||+||++|+...|.+.++.+++++ .+.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 46754 4566999999999999999999999875 588888865
No 142
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.74 E-value=2e-07 Score=70.12 Aligned_cols=108 Identities=12% Similarity=0.062 Sum_probs=70.6
Q ss_pred CCCeEEE-EEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC---------------------------CchhHHhh
Q 032338 22 EERVVII-RFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS---------------------------EVPDFNTM 72 (142)
Q Consensus 22 ~~k~vvv-~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d---------------------------~~~~l~~~ 72 (142)
.++.++| .||++||+.|....+.|.++.+++++ ++.++.|..| .+.++++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4666655 68999999999999999998888764 4555555444 23456777
Q ss_pred cCcC------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 73 YELY------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 73 ~~I~------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
|++. ++|+.+++. +|+........ ...+ .+.++++..|+.+......| ..|-+=|+|
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~-----~~~g-r~~~ellr~l~~l~~~~~~~-~~~p~~w~~ 169 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYP-----AETG-RNIDEIIRITKALQVNWKRK-VATPANWQP 169 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeC-----CCCC-CCHHHHHHHHHHhhhHHhcC-CCcCCCCCc
Confidence 7774 479988886 45443222111 1111 35788999998876655554 555555554
No 143
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.72 E-value=2.7e-07 Score=65.18 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=51.0
Q ss_pred CeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------c--hhHHhhcCcCC-
Q 032338 24 RVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------V--PDFNTMYELYD- 77 (142)
Q Consensus 24 k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------~--~~l~~~~~I~~- 77 (142)
++++|.|| ++||+.|....|.+.++.+++++ ++.++.|..+. . ..+++.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888888 99999999999999999988864 56676665543 2 45677777763
Q ss_pred ---Cc--EEEEEE-CCeEEEEecC
Q 032338 78 ---PS--TVMFFF-RNKHIMIDLG 95 (142)
Q Consensus 78 ---~P--t~~~f~-~g~~~~~~~g 95 (142)
+| +.+++. +|+......|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEec
Confidence 23 656665 5665544333
No 144
>PHA03050 glutaredoxin; Provisional
Probab=98.66 E-value=1e-07 Score=65.22 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC---c----hhHHhhcCcCCCcEEEEEE
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE---V----PDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~---~----~~l~~~~~I~~~Pt~~~f~ 85 (142)
.+++.+. +++ |+.|..+|||+|++.+..|.+..-+.. .+-.+|+++ . .++.+.-+..++|++ |.
T Consensus 5 ~v~~~i~--~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI 75 (108)
T PHA03050 5 FVQQRLA--NNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FF 75 (108)
T ss_pred HHHHHhc--cCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EE
Confidence 3455553 344 344999999999999999987754321 233555554 2 235556678899995 67
Q ss_pred CCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+|+.+ ||.++ +. .+....+|.+.|+++
T Consensus 76 ~g~~i-----GG~dd-l~-~l~~~g~L~~~l~~~ 102 (108)
T PHA03050 76 GKTSI-----GGYSD-LL-EIDNMDALGDILSSI 102 (108)
T ss_pred CCEEE-----eChHH-HH-HHHHcCCHHHHHHHc
Confidence 88877 23222 11 223345666666664
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.63 E-value=7.5e-07 Score=69.71 Aligned_cols=108 Identities=8% Similarity=0.067 Sum_probs=71.3
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------------chhHHh
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 71 (142)
.++++||.|| ++||++|....+.+.+..+++.+ .+.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567888887 99999999999999999888854 45555555443 245778
Q ss_pred hcCcC-----CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 72 MYELY-----DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 72 ~~~I~-----~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
.||+. ..|+.++++ +|+......... ... .+.+++++.|+.+......| ..|-+-|+|
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~-----~~g-r~v~eiLr~l~alq~~~~~g-~~cPanW~~ 240 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL-----GLG-RSVDETLRLFDAVQFAEKTG-NVCPVNWKQ 240 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCC-----CCC-CCHHHHHHHHHHhchhhhcC-CCcCCCCCc
Confidence 88875 589988886 566554332111 111 25688888888765544343 555555654
No 146
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.62 E-value=4.9e-07 Score=64.57 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCeEEEEEecC-CCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC
Q 032338 22 EERVVIIRFGHD-WDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~a~-WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~ 65 (142)
.++++||.||+. ||+.|....+.+.++.+++++ ++.++.|..|.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 578999999986 678899999999999888764 47777766653
No 147
>PRK13189 peroxiredoxin; Provisional
Probab=98.61 E-value=9.6e-07 Score=67.49 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCC-eEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------------chhHHhh
Q 032338 22 EER-VVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------------VPDFNTM 72 (142)
Q Consensus 22 ~~k-~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 72 (142)
.++ .||+.||++||+.|....+.|.+++++++. ++.++.|.+|. +.++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 555688999999999999999999988854 56666555442 2356677
Q ss_pred cCcC-------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCchh
Q 032338 73 YELY-------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYST 138 (142)
Q Consensus 73 ~~I~-------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~~~ 138 (142)
|++. ++|+.+++. +|........... .. ++.++++..|+.+......| ..|-+-|+|-.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~-----~g-r~~~eilr~l~alq~~~~~~-~~~p~~w~~g~ 180 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQE-----VG-RNMDEILRLVKALQTSDEKG-VATPANWPPND 180 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCC-----CC-CCHHHHHHHHHHhhhHhhcC-cCcCCCCCCCC
Confidence 7764 467777776 4655433222111 11 24578888888765544443 55555565543
No 148
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.61 E-value=1.1e-06 Score=66.83 Aligned_cols=108 Identities=8% Similarity=0.059 Sum_probs=71.2
Q ss_pred CCCe-EEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------------chhHHhh
Q 032338 22 EERV-VIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------------VPDFNTM 72 (142)
Q Consensus 22 ~~k~-vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 72 (142)
.+++ ||+.|||+||+.|....+.+.++.+++.. ++.++.|.+|. +.++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3565 56899999999999999999999998854 56666666553 2346777
Q ss_pred cCcC-------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 73 YELY-------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 73 ~~I~-------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
|++. ++|+.+++. +|+.....+.... .+ ++.+++++.|+++.. +-+.+-.|-+=|+|
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~----~g--r~~~eilr~l~~lq~-~~~~~~~~p~~w~~ 171 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQE----VG--RNVDEILRALKALQT-ADQYGVALPEKWPN 171 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCC----CC--CCHHHHHHHHHHhhh-hhhcCCCcCCCCCC
Confidence 8763 579988886 4655443221111 11 246888888887544 43345556566655
No 149
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.60 E-value=1.3e-07 Score=63.64 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=48.0
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh-------HHhhcCcCCCcEEEEEECCeEEEEecCCCcccc
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD-------FNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 101 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~-------l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~ 101 (142)
.|..+|||+|++.+..|.+.. +.+..+|+|.+++ +.+..+..++|.+ |.+|+.+ ||.+.
T Consensus 12 vysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i-----GG~dd- 77 (99)
T TIGR02189 12 IFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV-----GGLEN- 77 (99)
T ss_pred EEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE-----cCHHH-
Confidence 399999999999999887653 3333556554432 3333467899994 7788887 33332
Q ss_pred ccccccchhHHHHHHHHH
Q 032338 102 INWALKDKQEFIDIVETV 119 (142)
Q Consensus 102 ~~~~~~~~~~l~~~l~~~ 119 (142)
+. .+....+|.+.|++.
T Consensus 78 l~-~l~~~G~L~~~l~~~ 94 (99)
T TIGR02189 78 VM-ALHISGSLVPMLKQA 94 (99)
T ss_pred HH-HHHHcCCHHHHHHHh
Confidence 11 223346677776654
No 150
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.59 E-value=1.1e-06 Score=66.07 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=66.7
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC---------------------------chhHHhhcCcC
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------------VPDFNTMYELY 76 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~~I~ 76 (142)
.|++.||++||+.|....+.+.++.+++++ ++.++.|.+|. +..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 556689999999999999999999998864 56777766553 23567788875
Q ss_pred ----CC----cEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 77 ----DP----STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 77 ----~~----Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
+. |+.+++. +|+......+..... .+.+++++.|+++.... +-...|-+-|++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~g------r~~~ell~~l~~lq~~~-~~~~~~p~~w~~ 169 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTG------RNFDEILRVVDALQLTD-KHKVATPANWKP 169 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCC------CCHHHHHHHHHHHhhHh-hcCcCcCCCCCC
Confidence 22 3455554 455443332211111 24688888888764433 334555555543
No 151
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.58 E-value=2.6e-07 Score=64.66 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=37.7
Q ss_pred CCCeEEEEEecCCCHH-HHHHHHHHHHHHHHhcC----ceEEEEEeCCC
Q 032338 22 EERVVIIRFGHDWDDT-CMQMDEVLSSVAETIKN----FAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~d~ 65 (142)
.++++||.||++||++ |....+.+.++.+++++ ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 99999999999998865 38888887653
No 152
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.57 E-value=5.9e-07 Score=57.31 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=44.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-----hHHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.|+++|||+|+.+.+.+.++.. .+.++.+|.+++. .+.+..++.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 356999999999999999998765 3567777776552 35566788999994 6778766
No 153
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.50 E-value=1.5e-06 Score=67.57 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=65.8
Q ss_pred HHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC---------chhHHhhcCcCCCcEEEEEECC
Q 032338 17 AILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE---------VPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~---------~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
.|.+-.++.-++.||.+-|++|+++.|++..++++++=.+..+.+|-.- +...++.++|..+|++++...+
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 3333334567888999999999999999999999987344444444211 2346778999999999888654
Q ss_pred --eEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 88 --KHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 88 --~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+...+ ..++-+.++|.+.+..+.
T Consensus 217 t~~~~pv----------~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 217 SGSVRPL----------SYGFITQDDLAKRFLNVS 241 (248)
T ss_pred CCcEEEE----------eeccCCHHHHHHHHHHHH
Confidence 34433 323346788888887653
No 154
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.50 E-value=1e-06 Score=57.53 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=45.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc----hhHHhhcCc--CCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYEL--YDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~I--~~~Pt~~~f~~g~~~ 90 (142)
|+.|..+||++|++....|+++..+.. .+.+..+|++.+ .++.+..+- .++|++ |.+|+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~i 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKHV 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEEe
Confidence 456999999999999999999876543 466777777643 356666664 799995 5678776
No 155
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.49 E-value=1.2e-06 Score=61.05 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhc-CceEEEEEeCCC
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIK-NFAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~ 65 (142)
.+++++|.|| +.||+.|....|.+.++.++++ ..+.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4789999999 7899999999999999998874 357777776653
No 156
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.48 E-value=3.2e-08 Score=75.59 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=72.8
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCe
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+.+++...+. .-+++.|+||||+.|+...|.++.++.--.+ .+.+.+||++.|+.+.-.|-+...||+-=.++|.
T Consensus 30 ~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 30 DEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE 105 (248)
T ss_pred cccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc
Confidence 3555666542 3678899999999999999999999875333 6899999999999999999999999976667887
Q ss_pred EEEEecCCCccccccccccchhHHHHHHHH
Q 032338 89 HIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 89 ~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
-- |..|+ +++++|+.+++.
T Consensus 106 Fr----------rysga-Rdk~dfisf~~~ 124 (248)
T KOG0913|consen 106 FR----------RYSGA-RDKNDFISFEEH 124 (248)
T ss_pred cc----------cccCc-ccchhHHHHHHh
Confidence 54 34444 356777776643
No 157
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.48 E-value=1.1e-06 Score=54.20 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=40.4
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhc----CcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY----ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~----~I~~~Pt~~~f~~g~~~ 90 (142)
++.|+++||++|+.+...+.+. .+.+..+|++.++..++.+ ++.++|++++ +|+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i 61 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHL 61 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEE
Confidence 4569999999999998888752 3566678887776555444 6789999643 55544
No 158
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.47 E-value=1.5e-06 Score=74.25 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=62.4
Q ss_pred CeE-EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccc
Q 032338 24 RVV-IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKI 102 (142)
Q Consensus 24 k~v-vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~ 102 (142)
+++ +-.|.++||++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++ +.||+.+.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~--~i~~~~~~----------- 541 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAI--VVDDQQVY----------- 541 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEE--EECCEEEE-----------
Confidence 455 545689999999999999999999844 789999999999999999999999995 55777552
Q ss_pred cccccchhHHHHHH
Q 032338 103 NWALKDKQEFIDIV 116 (142)
Q Consensus 103 ~~~~~~~~~l~~~l 116 (142)
.|.. +.++++++|
T Consensus 542 ~G~~-~~~~~~~~~ 554 (555)
T TIGR03143 542 FGKK-TIEEMLELI 554 (555)
T ss_pred eeCC-CHHHHHHhh
Confidence 3333 567777654
No 159
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.42 E-value=7.7e-06 Score=61.25 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCeEEEEEec-CCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------------chhHHh
Q 032338 22 EERVVIIRFGH-DWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~a-~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 71 (142)
.+++++|.||+ +||+.|....+.+.++++++.. ++.++.|..|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47899999995 8899999888899999988864 56666666552 235677
Q ss_pred hcCcC------CCcEEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 72 MYELY------DPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 72 ~~~I~------~~Pt~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
.|++. .+|+.+++. +|+......+..... ++.+++++.|+.+-.....| ..|.+=|++
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~------r~~~e~l~~l~a~~~~~~~~-~~cp~~w~~ 179 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG------RNVEEVLRLLEAFQFVEKHG-EVCPANWKK 179 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC------CCHHHHHHHHHhhhhHHhcC-CEeCCCCCc
Confidence 88875 357777776 455443322211111 24577777777665544433 455555554
No 160
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.41 E-value=5.2e-07 Score=54.76 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh----HHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.|+.+||++|++.+..|++. ++.+-.+|++++++ +.+..+..++|++ |.+|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v--~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQV--FIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEE--EETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEE--EECCEEC
Confidence 4569999999999999998533 36667788777643 3444599999995 4578753
No 161
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.39 E-value=8.5e-06 Score=56.36 Aligned_cols=87 Identities=9% Similarity=0.194 Sum_probs=63.8
Q ss_pred cCCCeEEEEEecC----CCHHHHHHH--HHHHHHHHHhcCceEEEEEeCCCc--hhHHhhcCcCCCcEEEEEE--CCe--
Q 032338 21 EEERVVIIRFGHD----WDDTCMQMD--EVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFF--RNK-- 88 (142)
Q Consensus 21 ~~~k~vvv~F~a~----WC~~C~~~~--p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~~~I~~~Pt~~~f~--~g~-- 88 (142)
.+.|+++|+||++ ||..|+..- |.+.++ +..++.+...|++.. .+++..+++.++|++.++. +++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 5689999999999 999996542 333333 345788889998754 5689999999999998883 333
Q ss_pred EEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 89 ~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
.+ .++.|.+ +.++|+..|+.+.
T Consensus 92 vv---------~~i~G~~-~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IV---------GRLEGLI-QPEDLINRLTFIM 113 (116)
T ss_pred EE---------EEEeCCC-CHHHHHHHHHHHH
Confidence 23 3566665 4688998888764
No 162
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.38 E-value=2.1e-06 Score=52.53 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=42.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhH----HhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDF----NTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.|+++||++|+...+.|.+.. +.+..+|++.+++. .+..+..++|++ |.+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 34589999999999999998664 55668888776543 444567889985 5678776
No 163
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.38 E-value=6.2e-06 Score=56.10 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=64.0
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch----hHHhhcCcC-CCcE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYELY-DPST 80 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~I~-~~Pt 80 (142)
..|++.+++++++..+.++|++|.=.+++|+-.++....+++..+...+.+.++.+|+-+.+ .+|+.|||. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 46789999999998877899999889999999999999999999887656999999988765 478899984 5899
Q ss_pred EEEEECCeEEE
Q 032338 81 VMFFFRNKHIM 91 (142)
Q Consensus 81 ~~~f~~g~~~~ 91 (142)
+++++||+.+.
T Consensus 82 ~ili~~g~~v~ 92 (105)
T PF11009_consen 82 VILIKNGKVVW 92 (105)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999999885
No 164
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=3.4e-06 Score=58.41 Aligned_cols=77 Identities=10% Similarity=0.184 Sum_probs=58.4
Q ss_pred ChHHHHHHHHhc-CCCeEEEEEec--------CCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-------chhHHhhc
Q 032338 10 SGWAVDQAILTE-EERVVIIRFGH--------DWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-------VPDFNTMY 73 (142)
Q Consensus 10 ~~~~~~~~i~~~-~~k~vvv~F~a--------~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-------~~~l~~~~ 73 (142)
.-++|++.+.+. +++-+++.|++ +|||.|.+..|++.+.-++...++.|+.|++-+ +-.+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 456777766652 45679999986 699999999999999888777788888888643 23455556
Q ss_pred Cc-CCCcEEEEEEC
Q 032338 74 EL-YDPSTVMFFFR 86 (142)
Q Consensus 74 ~I-~~~Pt~~~f~~ 86 (142)
++ .++||++=+++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 88999887764
No 165
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.9e-06 Score=56.20 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-hHHh----hcCcCCCcEEEEEEC
Q 032338 12 WAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNT----MYELYDPSTVMFFFR 86 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~----~~~I~~~Pt~~~f~~ 86 (142)
+.++..+.. .+||| |..+||++|+.++..|.+ +.....++.+|.+.+. ++.+ .-+-+++|. +|.+
T Consensus 5 ~~v~~~i~~---~~VVi-fSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~--vFI~ 74 (104)
T KOG1752|consen 5 AKVRKMISE---NPVVI-FSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPN--VFIG 74 (104)
T ss_pred HHHHHHhhc---CCEEE-EECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE--EEEC
Confidence 345666642 35544 999999999998888887 4446677888876543 4433 233578999 5789
Q ss_pred CeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 87 g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
|+.+ |+.++-. .+....+|.+.|+..
T Consensus 75 Gk~i-----GG~~dl~--~lh~~G~L~~~l~~~ 100 (104)
T KOG1752|consen 75 GKFI-----GGASDLM--ALHKSGELVPLLKEA 100 (104)
T ss_pred CEEE-----cCHHHHH--HHHHcCCHHHHHHHh
Confidence 9988 4443322 223346677777664
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=6.6e-06 Score=69.74 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=58.2
Q ss_pred HHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 18 ILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 18 i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|..-+++.-+..|.+++|++|......+++++.+ .+++.+-.+|..++++++++|+|.++|++ |.||+.+
T Consensus 111 i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~~~~~~~~v~~VP~~--~i~~~~~ 180 (517)
T PRK15317 111 IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQDEVEARNIMAVPTV--FLNGEEF 180 (517)
T ss_pred HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCHhHHHhcCCcccCEE--EECCcEE
Confidence 3333344557889999999999999999999987 44899999999999999999999999996 4577654
No 167
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.28 E-value=2.2e-06 Score=63.83 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=42.7
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS 64 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 64 (142)
+|.+..++ ++.+.- .+..+++|||.|||+||++|+. .|.|+++.++|++ .+.++.+.++
T Consensus 7 ~f~~~~~~-G~~v~L--s~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 7 TTVVTTID-GEVTTL--EKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CcEeECCC-CCEEeH--HHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 44555554 333332 2235799999999999999975 7799999999975 5788888763
No 168
>PRK10824 glutaredoxin-4; Provisional
Probab=98.27 E-value=4e-06 Score=58.01 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=55.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEec-----CCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh----hcCcCCCcEE
Q 032338 11 GWAVDQAILTEEERVVIIRFGH-----DWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT----MYELYDPSTV 81 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a-----~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~I~~~Pt~ 81 (142)
.+.++++|.+ + +|+| |.. ||||+|++....|.+... .+..+|+++++++.+ .-+..++|.
T Consensus 5 ~~~v~~~I~~--~-~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~i------~~~~idi~~d~~~~~~l~~~sg~~TVPQ- 73 (115)
T PRK10824 5 IEKIQRQIAE--N-PILL-YMKGSPKLPSCGFSAQAVQALSACGE------RFAYVDILQNPDIRAELPKYANWPTFPQ- 73 (115)
T ss_pred HHHHHHHHhc--C-CEEE-EECCCCCCCCCchHHHHHHHHHHcCC------CceEEEecCCHHHHHHHHHHhCCCCCCe-
Confidence 4556777643 3 4444 554 699999999999987642 233556666654433 345678998
Q ss_pred EEEECCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 82 ~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+|.+|+.+ ||.+. +. .+....+|.+.|+.+
T Consensus 74 -IFI~G~~I-----GG~dd-l~-~l~~~G~L~~lL~~~ 103 (115)
T PRK10824 74 -LWVDGELV-----GGCDI-VI-EMYQRGELQQLIKET 103 (115)
T ss_pred -EEECCEEE-----cChHH-HH-HHHHCCCHHHHHHHH
Confidence 57899998 44432 22 122345666666553
No 169
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.27 E-value=5.6e-06 Score=53.06 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=41.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc---hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV---PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~---~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+-|+.+||++|++.+..|++. .+.+-.+|++++ .++....+..++|.+ |.+|+.+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 68 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQV--FIGGKLI 68 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeE--EECCEEE
Confidence 4459999999999999999743 344556777655 345556688999995 5578766
No 170
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.23 E-value=1.7e-05 Score=67.95 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=83.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE-CCeE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF-RNKH 89 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~-~g~~ 89 (142)
.+++.+.+..-.+.+.++.|+.+-|..|..+...++++++ +.+++.+...|..++++++++|++...|++.++. +|+.
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 4456666665555566778888899999999999999995 4678888889999999999999999999999985 5544
Q ss_pred EEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCce
Q 032338 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 90 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~ 129 (142)
..+ ++. ++++-.||-.+|..++..+..+.++
T Consensus 433 ~~i--------~f~-g~P~G~Ef~s~i~~i~~~~~~~~~l 463 (555)
T TIGR03143 433 TGL--------KFH-GVPSGHELNSFILALYNAAGPGQPL 463 (555)
T ss_pred cce--------EEE-ecCccHhHHHHHHHHHHhcCCCCCC
Confidence 322 222 3455688899999888877666655
No 171
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.21 E-value=5.8e-06 Score=63.59 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEE-------------------------------------------
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVI------------------------------------------- 58 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~------------------------------------------- 58 (142)
+++.+++.|.-+.||+|+++.+.+.++.+. .+.+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467889999999999999999888775431 1111
Q ss_pred -EEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 59 -YLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 59 -~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
+..+++++.+++++++|+++||++ |.||+.+ .|.. +.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~------------~G~~-~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV------------PGYQ-GPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe------------eCCC-CHHHHHHHHHHc
Confidence 122344567899999999999975 6788866 2332 457788777653
No 172
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.21 E-value=4.1e-06 Score=56.07 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCeEEEEEe-----cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHH----hhcCcCCCcEEE
Q 032338 12 WAVDQAILTEEERVVIIRFG-----HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFN----TMYELYDPSTVM 82 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~-----a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~~~I~~~Pt~~ 82 (142)
+.+++++. ++ +|+| |. +||||+|++....|.+.. +.+..+|+++++++. +..+..++|.+
T Consensus 3 ~~v~~~i~--~~-~Vvv-f~kg~~~~~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~v- 71 (97)
T TIGR00365 3 ERIKEQIK--EN-PVVL-YMKGTPQFPQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQL- 71 (97)
T ss_pred HHHHHHhc--cC-CEEE-EEccCCCCCCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence 45566653 34 4444 43 399999999999998653 445578887776543 34556789994
Q ss_pred EEECCeEE
Q 032338 83 FFFRNKHI 90 (142)
Q Consensus 83 ~f~~g~~~ 90 (142)
|.+|+.+
T Consensus 72 -fi~g~~i 78 (97)
T TIGR00365 72 -YVKGEFV 78 (97)
T ss_pred -EECCEEE
Confidence 6788877
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.13 E-value=4.9e-06 Score=62.02 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=47.9
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHH--------------------------------Hh----cC-----ceEEEE
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAE--------------------------------TI----KN-----FAVIYL 60 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~--------------------------------~~----~~-----~v~~~~ 60 (142)
+++..++.|..+.|++|+++.+.+.+... .+ .+ ....+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~ 155 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD 155 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence 35799999999999999999888864100 00 00 011233
Q ss_pred EeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 61 VDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 61 vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++++..++++++|+++||++ |.+|+.+
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~~~ 184 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGRVV 184 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCeEe
Confidence 4455677899999999999985 7788765
No 174
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.12 E-value=6.4e-06 Score=52.44 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=40.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhH----HhhcCcCCCcEEEEEECCeEE
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDF----NTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
..|+.+||++|+.....|++. .+.+-.+|++.+++. .+..+..++|++ |.+|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 458999999999999999854 244556677766544 344477899994 6678766
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.09 E-value=2.9e-05 Score=48.63 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=40.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh----hcCcC-CCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT----MYELY-DPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~I~-~~Pt~~~f~~g~~~ 90 (142)
++.|+.+||++|+..+..|.+. ++.+-.+|++.+++..+ ..+.. ++|++ |.+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 3458999999999999998753 35566778777654433 34666 89984 6778776
No 176
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.03 E-value=3e-05 Score=48.56 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh---HHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD---FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.|..+||+.|++.+..|.+. .+.+-.+|++++.. +.+..+..++|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 3458999999999998888853 35556777766543 3444588999995 6678766
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.00 E-value=6.6e-05 Score=63.68 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=57.8
Q ss_pred HHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 18 ILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 18 i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|..-.++.-+-.|.++.|++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++ |.||+.+
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~--~i~~~~~ 181 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAV--FLNGEEF 181 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEE--EECCcEE
Confidence 443334455788999999999999999999998844 888889999999999999999999996 4467654
No 178
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.99 E-value=6e-05 Score=47.32 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=41.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh----HHhhcCcCCCcEEEEEECCeEE
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
+-|..+||+.|++....|++. .+.+-.+|++.++. +.+..+-.++|++ |.+|+.+
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 448999999999999998863 35566778877654 5555577889994 6678877
No 179
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.96 E-value=3.6e-05 Score=48.32 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=40.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhc---CcCCCcEEEEEECCe
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY---ELYDPSTVMFFFRNK 88 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~I~~~Pt~~~f~~g~ 88 (142)
..|..+||++|++.+..|++. .+.+-.+|++++++..+.+ +..++|++ +.+|+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v--~~~g~ 57 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVI--VADGD 57 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEE--EECCC
Confidence 358899999999999999742 4666788888887665555 77899995 44554
No 180
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.95 E-value=3.1e-05 Score=50.89 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhH----HhhcCcCCCcEEEEEECCeEE
Q 032338 33 DWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDF----NTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 33 ~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
+||++|++.+..|.+.. +.+-.+|+++++++ .+..+-.++|++ |.+|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 79999999999998653 44557777666654 334567899995 6688876
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.94 E-value=0.00022 Score=46.14 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=39.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh---hcCcCCCcEEEEEECCeE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---MYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~I~~~Pt~~~f~~g~~ 89 (142)
+..|..+||++|++.+..|++ ..+.|-.+|++++++.++ ..+..++|++ +.++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv--~i~~~~ 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVV--IAGDLS 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEE--EECCEE
Confidence 345899999999999988854 247777889988776433 3467899996 335543
No 182
>PRK10638 glutaredoxin 3; Provisional
Probab=97.93 E-value=1.8e-05 Score=51.11 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=40.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchh----HHhhcCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++-|..+||++|++....|++.. +.+..+|++.+++ +.+..+..++|++ |.+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG------VSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 34578899999999999988642 4445677776653 4455577889985 5678776
No 183
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.84 E-value=0.00044 Score=56.00 Aligned_cols=98 Identities=10% Similarity=0.171 Sum_probs=65.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHH-----HHHHHHHHHHHh-c-CceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQ-----MDEVLSSVAETI-K-NFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~-----~~p~l~~la~~~-~-~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
|.++|.+++.+ ...++|.|+.|--..=-. |...+-+++++. . ..+.|+.||..++..+|+++|+...+++.
T Consensus 40 neKNfk~~lKk--yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~Siy 117 (383)
T PF01216_consen 40 NEKNFKRALKK--YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIY 117 (383)
T ss_dssp -TTTHHHHHHH---SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEE
T ss_pred chhHHHHHHHh--hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEE
Confidence 47788898764 478899999886432211 334344454443 2 36999999999999999999999999999
Q ss_pred EEECCeEEEEecCCCccccccccccchhHHHHHHHHHH
Q 032338 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 83 ~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 120 (142)
+|++|+.+..+ |. .+++.|+++|-.+.
T Consensus 118 Vfkd~~~IEyd----------G~-~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 118 VFKDGEVIEYD----------GE-RSADTLVEFLLDLL 144 (383)
T ss_dssp EEETTEEEEE-----------S---SHHHHHHHHHHHH
T ss_pred EEECCcEEEec----------Cc-cCHHHHHHHHHHhc
Confidence 99999998543 22 24577777776653
No 184
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.83 E-value=0.00069 Score=47.63 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=77.7
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCC---C-HHH-HHHHHHHHHHHHHhcCc-eEEEEEeCCCchhHHhhcCcC--
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDW---D-DTC-MQMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELY-- 76 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~W---C-~~C-~~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~I~-- 76 (142)
+.+|++.+.+++.=. ++.+-+|-| -|. | ..+ ..+...+.++|++++++ +.|+.+|.++...+.+.|++.
T Consensus 4 ~~~l~~~~~~~~~C~--~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 4 IIELTSEDVFEETCE--EKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred eEEecCHHHHHhhcc--CCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence 456777777776432 244555555 332 2 223 45788899999999998 999999999999999999995
Q ss_pred CCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCcee
Q 032338 77 DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLV 130 (142)
Q Consensus 77 ~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~ 130 (142)
.+|+++++...+.. |. ...+.+ +.+.+.++++....|...+-.+.
T Consensus 81 ~~P~v~i~~~~~~K---Y~-----~~~~~~-t~e~i~~Fv~~~l~Gkl~~~~~~ 125 (130)
T cd02983 81 GYPAMVAINFRKMK---FA-----TLKGSF-SEDGINEFLRELSYGRGPTLPVN 125 (130)
T ss_pred CCCEEEEEecccCc---cc-----cccCcc-CHHHHHHHHHHHHcCCcccccCC
Confidence 49999888754321 10 123334 35788888888777665444443
No 185
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.82 E-value=9.7e-05 Score=47.34 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=42.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeC--CC------------------------------chhHHhhcC
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDI--SE------------------------------VPDFNTMYE 74 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~--d~------------------------------~~~l~~~~~ 74 (142)
|..|+.+.|++|..+.+.+.++.+...+++.+..... .. +...+++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999766566666554443 22 134577899
Q ss_pred cCCCcEEEE
Q 032338 75 LYDPSTVMF 83 (142)
Q Consensus 75 I~~~Pt~~~ 83 (142)
+.++||+++
T Consensus 81 ~~g~Pt~v~ 89 (98)
T cd02972 81 VTGTPTFVV 89 (98)
T ss_pred CCCCCEEEE
Confidence 999999654
No 186
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.79 E-value=0.0011 Score=47.87 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=62.4
Q ss_pred hHHHHHHHHhcCCCe-EEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcC--CCcEEEEEE
Q 032338 11 GWAVDQAILTEEERV-VIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFF 85 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~-vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~--~~Pt~~~f~ 85 (142)
.+++.++.. .+++ +++.|...-......+...+.++++++.+++.|+.+|.+..+.+++.+++. .+|+++++.
T Consensus 84 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 84 PENFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp TTHHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred hhhHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 556777553 3444 788888777888899999999999999989999999999999999999998 899999998
No 187
>PTZ00062 glutaredoxin; Provisional
Probab=97.76 E-value=9.7e-05 Score=55.91 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=37.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh----hcCcCCCcEEEEEECCeEE
Q 032338 32 HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT----MYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 32 a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~I~~~Pt~~~f~~g~~~ 90 (142)
+|||+.|++....|.+. .+.+..+|+++++++.+ .-+..++|. +|.+|+.+
T Consensus 125 ~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI~G~~I 179 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYVNGELI 179 (204)
T ss_pred CCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEECCEEE
Confidence 37999999999998854 34555778877765433 345678898 46789887
No 188
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.75 E-value=0.00058 Score=44.65 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=64.5
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
..|++.+++++.+. .++++||-|+.++|. .....+.++|+.+.+.+.|+.+. ++++++++.+. .|++++|+
T Consensus 2 ~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeC
Confidence 35778888888653 467888899999987 46778888999887777877766 45777778765 47888887
Q ss_pred CCeEEEEecCCCccccccccccchhHHHHHHH
Q 032338 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 86 ~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 117 (142)
+...-... ..|.+. .++|.++|.
T Consensus 73 ~~~~~~~~--------y~g~~~-~~~l~~fi~ 95 (97)
T cd02981 73 PFEEEPVE--------YDGEFT-EESLVEFIK 95 (97)
T ss_pred CcccCCcc--------CCCCCC-HHHHHHHHH
Confidence 64221111 222222 467777765
No 189
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00023 Score=45.97 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=39.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-----hHHhhc-CcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMY-ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~-~I~~~Pt~~~f~~g~~~ 90 (142)
++.|..+|||+|++.+..|.+. .+.+..+|++.+. +..+.. +.+++|. +|.+|+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~--I~i~~~~i 64 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ--IFIGGKHV 64 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCE--EEECCEEE
Confidence 4558999999999999888833 3455566665544 334444 7899999 46778766
No 190
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00029 Score=61.25 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=62.2
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCchhHHhhcC--------cCCCc
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEVPDFNTMYE--------LYDPS 79 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~~~--------I~~~P 79 (142)
.+.|+++- .++|||+|....+||.-|+.|...- +++|+-++.+++-+|||.++-|++.+-|. --+.|
T Consensus 33 ~eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 33 EEAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred HHHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 56677764 4689999999999999999998653 46777777789999999999999888776 46789
Q ss_pred EEEEEE-CCeEE
Q 032338 80 TVMFFF-RNKHI 90 (142)
Q Consensus 80 t~~~f~-~g~~~ 90 (142)
-.+|.- +|+..
T Consensus 111 LtVfLTPd~kPF 122 (667)
T COG1331 111 LTVFLTPDGKPF 122 (667)
T ss_pred eeEEECCCCcee
Confidence 887775 45544
No 191
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.67 E-value=0.00036 Score=44.91 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=44.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~ 81 (142)
++.|..+.|+-|......+.++..+. .+.+-.||+++++++..+|+. .+|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEE
Confidence 45689999999999999999887653 488999999999999999995 89994
No 192
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.65 E-value=0.00034 Score=53.27 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=71.7
Q ss_pred cCcccCChHHHHHHHHhc-CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 4 LLPHLHSGWAVDQAILTE-EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 4 ~l~~l~~~~~~~~~i~~~-~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
++-++.++++|-..|... +.-.++|..|-+.-+-|-.+...+.=||.+|+ .+.|+++-...- .....|....+||++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~-gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNT-GASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeeccc-cchhhhcccCCceEE
Confidence 566788999997777654 34588889999999999999999999999987 789999876543 456788999999999
Q ss_pred EEECCeEE
Q 032338 83 FFFRNKHI 90 (142)
Q Consensus 83 ~f~~g~~~ 90 (142)
||++|+.+
T Consensus 217 iYkgGeLI 224 (273)
T KOG3171|consen 217 IYKGGELI 224 (273)
T ss_pred EeeCCchh
Confidence 99999987
No 193
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.49 E-value=0.0012 Score=51.36 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHH
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAE 50 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~ 50 (142)
+.+.+|+.|.-+.||+|+++.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 35678889999999999999888766544
No 194
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.48 E-value=0.00019 Score=49.00 Aligned_cols=78 Identities=8% Similarity=0.047 Sum_probs=59.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCC---HHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECC
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWD---DTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC---~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
..+++..+.. +...++ |.+.-| +.+.-..=++.++.+.+.+.+....++.+...+++..|++...|+++||++|
T Consensus 16 ~~~ld~~l~~--~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 16 ADTLDAFLAA--PGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp CCCHHHHHHC--CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred hhhHHHHHhC--CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECC
Confidence 5677887753 334444 555545 4445566688999999998888889998888999999999999999999999
Q ss_pred eEEE
Q 032338 88 KHIM 91 (142)
Q Consensus 88 ~~~~ 91 (142)
+.+.
T Consensus 93 ~~lG 96 (107)
T PF07449_consen 93 RYLG 96 (107)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 195
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.35 E-value=0.00065 Score=47.46 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeC
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 63 (142)
+.+++|+.|+.++||+|+.+.|.+.++..+++ ++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 46799999999999999999999999887764 455554443
No 196
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.18 E-value=0.00075 Score=56.04 Aligned_cols=56 Identities=7% Similarity=0.038 Sum_probs=40.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHh---h---------cCcCCCcEEEEEECCeEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---M---------YELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~---------~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.|..+|||+|++.+..|.+. .+.+-.+|+++++...+ + .+.+++|++ |.+|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~i--fi~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQI--FVGDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeE--EECCEEE
Confidence 4559999999999999888864 35666888887764222 2 367899995 5577766
No 197
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0097 Score=43.30 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=41.0
Q ss_pred ccCcccCChHHHHHHHHhcCCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC
Q 032338 3 YLLPHLHSGWAVDQAILTEEERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE 65 (142)
Q Consensus 3 ~~l~~l~~~~~~~~~i~~~~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~ 65 (142)
|.|+..+ ++.+. +.+..+++|||+|| .+|++-|-...--+.+...++.. ++.++-|..|.
T Consensus 13 F~Lp~~~-g~~v~--Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 13 FELPDQD-GETVS--LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred eEeecCC-CCEEe--hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5566543 32221 23345789999999 89999998888888887777765 56666666553
No 198
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.91 E-value=0.012 Score=40.23 Aligned_cols=63 Identities=11% Similarity=-0.004 Sum_probs=49.0
Q ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHHHHhc-CceEEEEEeCCCchhHHhhcCcCC----CcEEEEEEC
Q 032338 24 RVVIIRFGHD---WDDTCMQMDEVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYD----PSTVMFFFR 86 (142)
Q Consensus 24 k~vvv~F~a~---WC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~~~I~~----~Pt~~~f~~ 86 (142)
+++++.+-.+ --..-..+...+.++|++++ +++.|+.+|.++.....+.||+.. .|++.++..
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 3455543332 33444678899999999999 699999999998888899999974 999988763
No 199
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.82 E-value=0.0015 Score=47.02 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=49.4
Q ss_pred EEecC------CCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHH----hhcCc----CCCcEEEEEECCeEEEEec
Q 032338 29 RFGHD------WDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFN----TMYEL----YDPSTVMFFFRNKHIMIDL 94 (142)
Q Consensus 29 ~F~a~------WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~----~~~~I----~~~Pt~~~f~~g~~~~~~~ 94 (142)
.|.++ ||++|++.+.+|+.+ .+.+-.+|++.++++. +..+- .++|. +|.+|+.+
T Consensus 4 lYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPq--VFI~G~~I---- 71 (147)
T cd03031 4 LYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPR--VFVDGRYL---- 71 (147)
T ss_pred EEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCE--EEECCEEE----
Confidence 35666 899999999999865 3566788888765543 33343 68998 46788887
Q ss_pred CCCccccccccccchhHHHHHHHHH
Q 032338 95 GTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 95 g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
++.+. +. .+....+|.+.|+.+
T Consensus 72 -GG~de-l~-~L~e~G~L~~lL~~~ 93 (147)
T cd03031 72 -GGAEE-VL-RLNESGELRKLLKGI 93 (147)
T ss_pred -ecHHH-HH-HHHHcCCHHHHHhhc
Confidence 33332 11 223346677777665
No 200
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.81 E-value=0.0067 Score=42.87 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=37.1
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHh--cCceEEEEEeCC
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETI--KNFAVIYLVDIS 64 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d 64 (142)
.+.+++|+.|+..-|++|+.+.+.+.++.+++ .+++.+...+.-
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 34679999999999999999999999999998 678888887763
No 201
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.79 E-value=0.024 Score=38.65 Aligned_cols=90 Identities=11% Similarity=-0.054 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---hcCceEEEEEeCCCchhHHhhcCcCC--CcEEEEEECCeEEEEecCCC
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAET---IKNFAVIYLVDISEVPDFNTMYELYD--PSTVMFFFRNKHIMIDLGTG 97 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~---~~~~v~~~~vd~d~~~~l~~~~~I~~--~Pt~~~f~~g~~~~~~~g~~ 97 (142)
+.+..+-|+ .-..-..+.+.+.++|++ +++++.|+.+|.++....++.+|+.. +|.+.+....... .|.-
T Consensus 16 ~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~--Ky~~- 90 (111)
T cd03072 16 GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMY--LFPD- 90 (111)
T ss_pred CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcC--cCCC-
Confidence 445555556 223346788999999999 99999999999999888999999987 9998777543211 1110
Q ss_pred ccccccccccchhHHHHHHHHHHHh
Q 032338 98 NNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 98 ~~~~~~~~~~~~~~l~~~l~~~~~~ 122 (142)
..+.+ +.+.+.++++....|
T Consensus 91 ----~~~~~-t~~~i~~Fv~~~~~G 110 (111)
T cd03072 91 ----FEDVY-VPGKLKQFVLDLHSG 110 (111)
T ss_pred ----Ccccc-CHHHHHHHHHHHhcC
Confidence 11122 247788888776543
No 202
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.64 E-value=0.0037 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=33.5
Q ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEE
Q 032338 22 EERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLV 61 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~v 61 (142)
++++.|++|+...||+|+.+.+.+.++.+++++++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 4689999999999999999999999998887666555433
No 203
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.50 E-value=0.071 Score=35.44 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++.+....-.+.+.++.|..+. ..|..+...++++++- .+++.+-..+.++ ..|++.+..+|+..
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASL-SDKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHh-CCceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 455666655444444455555544 9999999999999986 4566654443322 47999988777432
Q ss_pred EEecCCCccccccccccchhHHHHHHHHH
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
.+ +.. ++++=.||-.+|..+
T Consensus 74 gI--------rF~-GiP~GhEf~Slilai 93 (94)
T cd02974 74 GI--------RFA-GIPMGHEFTSLVLAL 93 (94)
T ss_pred cE--------EEE-ecCCchhHHHHHHHh
Confidence 21 223 234457777777654
No 204
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.019 Score=46.03 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=58.5
Q ss_pred hHHHHHHHHh-cCCCeEEEEEecC----CCHHHHHHHHHHHHHHHHhc------C--ceEEEEEeCCCchhHHhhcCcCC
Q 032338 11 GWAVDQAILT-EEERVVIIRFGHD----WDDTCMQMDEVLSSVAETIK------N--FAVIYLVDISEVPDFNTMYELYD 77 (142)
Q Consensus 11 ~~~~~~~i~~-~~~k~vvv~F~a~----WC~~C~~~~p~l~~la~~~~------~--~v~~~~vd~d~~~~l~~~~~I~~ 77 (142)
++.+..++.. ..+--+++.|.|. -|.-|+.....+.-+++.+. + ++-|..||.|+.++.-+.+++.+
T Consensus 47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~ 126 (331)
T KOG2603|consen 47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNN 126 (331)
T ss_pred CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccC
Confidence 3444454442 1233677778874 69999999999998888652 1 47799999999999999999999
Q ss_pred CcEEEEEEC
Q 032338 78 PSTVMFFFR 86 (142)
Q Consensus 78 ~Pt~~~f~~ 86 (142)
+|++..|..
T Consensus 127 ~P~l~~f~P 135 (331)
T KOG2603|consen 127 VPHLVLFSP 135 (331)
T ss_pred CCeEEEeCC
Confidence 999999954
No 205
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.38 E-value=0.032 Score=42.29 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=58.4
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 7 HLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 7 ~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
.|+..+-..++....++-.|||..|...=+.|+-+...++.++-+|. .+.|+++=.+.. ...|-=...||+++|..
T Consensus 95 ~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~VY~~ 170 (240)
T KOG3170|consen 95 PISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLLVYHH 170 (240)
T ss_pred eccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEEEeec
Confidence 34433333444444567799999999999999999999999999987 688888765543 12355578999999987
Q ss_pred Ce
Q 032338 87 NK 88 (142)
Q Consensus 87 g~ 88 (142)
|.
T Consensus 171 G~ 172 (240)
T KOG3170|consen 171 GA 172 (240)
T ss_pred ch
Confidence 75
No 206
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.21 E-value=0.069 Score=45.42 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=66.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++.+++..- .++|-+.++.+-|..|..+...++++++- .+++.+-..+.+ ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~ 73 (517)
T PRK15317 7 KTQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASL-SDKITVEEDSLD-----------VRKPSFSITRPGEDT 73 (517)
T ss_pred HHHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHh-CCceEEEEccCC-----------CCCCEEEEEcCCccc
Confidence 45666665543 45666666677899999999999999986 456665443221 247999888777654
Q ss_pred EEecCCCccccccccccchhHHHHHHHHHHHhhhcCCce
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~ 129 (142)
.+ ++. ++++-.||-.+|..++.-+..|.++
T Consensus 74 ~i--------~f~-g~P~g~Ef~s~i~~i~~~~~~~~~l 103 (517)
T PRK15317 74 GV--------RFA-GIPMGHEFTSLVLALLQVGGHPPKL 103 (517)
T ss_pred eE--------EEE-ecCccHHHHHHHHHHHHhcCCCCCC
Confidence 33 222 3455688999999988877766665
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.20 E-value=0.093 Score=36.71 Aligned_cols=97 Identities=14% Similarity=0.236 Sum_probs=60.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHH-HHh--cCceEEEEEeCC-----CchhHHhhcCc--CCCcE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVA-ETI--KNFAVIYLVDIS-----EVPDFNTMYEL--YDPST 80 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la-~~~--~~~v~~~~vd~d-----~~~~l~~~~~I--~~~Pt 80 (142)
.-+|+++|.. .+.++|.|-... |-=.-...+.++| +.. .+.+.++.|.+. +|.+|++.|+| ...|.
T Consensus 11 ~~tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 11 ELTFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp TTHHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred ceehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 4578998854 489999996554 2333355667777 332 347889999875 57899999999 66899
Q ss_pred EEEEECCeEEEEecCCCccccccccccchhHHHHHHHH
Q 032338 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 81 ~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+.+|..|..-++.+. . .+.+. .+.|..++.+
T Consensus 87 ~~LF~~~~~~pv~~p--~----~~~~t-~~~l~~fvk~ 117 (126)
T PF07912_consen 87 IYLFVGDKEEPVRYP--F----DGDVT-ADNLQRFVKS 117 (126)
T ss_dssp EEEEESSTTSEEEE---T----CS-S--HHHHHHHHHH
T ss_pred EEEecCCCCCCccCC--c----cCCcc-HHHHHHHHHh
Confidence 999985543333331 1 11222 4667777655
No 208
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.88 E-value=0.14 Score=43.55 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=66.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+++.+.+..- .++|.|.++.+-|..|..+...++++++. .+++.+...+.+. ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 7 LAQLKSYLASL-ENPVTLVLSAGSHEKSKELLELLDEIASL-SDKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCchhHHHHHHHHHHHHh-CCCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 45666666543 34665655655799999999999999886 5566665444332 346999888777644
Q ss_pred EEecCCCccccccccccchhHHHHHHHHHHHhhhcCCce
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~ 129 (142)
.+ ++. ++++-.||-.+|..++..+..+.++
T Consensus 75 ~i--------~f~-g~P~g~Ef~s~i~~i~~~~~~~~~l 104 (515)
T TIGR03140 75 GI--------RFA-GIPGGHEFTSLVLAILQVGGHGPKL 104 (515)
T ss_pred ce--------EEE-ecCCcHHHHHHHHHHHHhcCCCCCC
Confidence 22 223 3455688888998888777666655
No 209
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.83 E-value=0.013 Score=44.05 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEe
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVD 62 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd 62 (142)
+++.|++|+.-.||+|+.+.+.+ +.+.+.+.+++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 57889999999999999999876 78888887665655544
No 210
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.48 E-value=0.031 Score=40.16 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=35.8
Q ss_pred CeEEEEEecCCCHHHHHH-HHHHHHHHHHhcC-ce-EEEEEeCCCc---hhHHhhcCc
Q 032338 24 RVVIIRFGHDWDDTCMQM-DEVLSSVAETIKN-FA-VIYLVDISEV---PDFNTMYEL 75 (142)
Q Consensus 24 k~vvv~F~a~WC~~C~~~-~p~l~~la~~~~~-~v-~~~~vd~d~~---~~l~~~~~I 75 (142)
..|++.|.+.||+.|... .+-+.+..+++.. .+ .++-|..|.. .++++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 455555669999999998 8888888888753 44 4666666543 345555555
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.47 E-value=0.16 Score=36.41 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 41 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 41 ~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
....+.++|+.+.+.+.|+.+. +.++++.+++.. |++++|+++..-...|.+. .+ +.++|.++|...
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-------~~-~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-------KF-TPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-------TT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc-------cC-CHHHHHHHHHHh
Confidence 4567889999998889999887 667899999999 9999999743222222221 01 468888888764
No 212
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.45 E-value=0.13 Score=34.91 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=58.2
Q ss_pred cCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC--chhHHhhcCcC----C
Q 032338 4 LLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELY----D 77 (142)
Q Consensus 4 ~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~I~----~ 77 (142)
++..|++-++|..++... + -|+|-|..+ -..-.....++.++|++..+..++..||+.+ .+.||.++.|. -
T Consensus 2 ~ie~i~d~KdfKKLLRTr-~-NVLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 2 LIEDISDHKDFKKLLRTR-N-NVLVLYSKS-AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccccchHHHHHHHhhc-C-cEEEEEecc-hhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 355788899999988753 3 344434444 3444444568889999999999999999976 67899999987 4
Q ss_pred Cc-EEEEEECCe
Q 032338 78 PS-TVMFFFRNK 88 (142)
Q Consensus 78 ~P-t~~~f~~g~ 88 (142)
-| ++.=|++|.
T Consensus 79 ~~~~LkHYKdG~ 90 (112)
T cd03067 79 KPVELKHYKDGD 90 (112)
T ss_pred CcchhhcccCCC
Confidence 44 344566775
No 213
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.23 E-value=0.11 Score=33.05 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=44.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHh-cCceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETI-KNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
+.-|-|...+..+.....+.++.+++ ++.+.+=.||+.++|++|+.++|-.+||++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 34455555577877777777777765 558999999999999999999999999964
No 214
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.19 E-value=0.35 Score=32.06 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=59.4
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
..|++.++++.++.. ++.++||-|+.+--. .....+.++|+.+.+.+.|+.. .+.+++..+++. .|++++++
T Consensus 3 ~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 3 EIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred eEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeC
Confidence 467888999998741 245666666665444 3556788888888667777543 334667777765 68888886
Q ss_pred CCeEEEEec-CCCccccccccccchhHHHHHHHH
Q 032338 86 RNKHIMIDL-GTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 86 ~g~~~~~~~-g~~~~~~~~~~~~~~~~l~~~l~~ 118 (142)
+...-...| ++ . .+.++|.++|..
T Consensus 75 ~~~e~~~~y~~g--------~-~~~~~l~~fi~~ 99 (102)
T cd03066 75 PFMEEPVTIPDK--------P-YSEEELVDFVEE 99 (102)
T ss_pred CCCCCCcccCCC--------C-CCHHHHHHHHHH
Confidence 522221223 21 1 135778888765
No 215
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.04 E-value=0.19 Score=38.86 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=33.4
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEE
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIY 59 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~ 59 (142)
..++|+||+|.+-.||+=+.-.+.+.+++++|.+.+.|+
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl 138 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFL 138 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhee
Confidence 457999999999999999999999999999988754443
No 216
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.74 E-value=0.68 Score=30.80 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=49.2
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+..+++.+++++.+. .++++||-|+.+--. .....+.++|+.+.+.+.|+... +.+++..+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 356788889988774 345666667766444 45677788888886677775543 3466778888 6777788
Q ss_pred E
Q 032338 85 F 85 (142)
Q Consensus 85 ~ 85 (142)
+
T Consensus 72 ~ 72 (104)
T cd03069 72 R 72 (104)
T ss_pred e
Confidence 4
No 217
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.06 E-value=0.36 Score=32.70 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=47.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHH-hcCceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 24 RVVIIRFGHDWDDTCMQMDEVLSSVAET-IKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 24 k~vvv~F~a~WC~~C~~~~p~l~~la~~-~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
..++=-|.|.--+..+....-+.++.++ +.+.+.+-.||+.++|++|+.++|-++||++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLA 65 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHh
Confidence 4555556777788888877777777664 4667889999999999999999999999963
No 218
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.03 E-value=0.37 Score=31.66 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=46.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHH-hcCceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSSVAET-IKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~la~~-~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
.++=-|.|.--+.++....-+.++.++ +.+.+.+-.||+.++|++|+.++|-++||++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 344446677778887777777777664 5667889999999999999999999999964
No 219
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.12 Score=33.15 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=39.2
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC--------------CchhH--HhhcCcCCCcEEEEEECC
Q 032338 24 RVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS--------------EVPDF--NTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 24 k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d--------------~~~~l--~~~~~I~~~Pt~~~f~~g 87 (142)
+|+ .|+|.-||.|......++++.-.|. .||+. ..+++ ++..+.-++|.++ ..+|
T Consensus 3 kp~--lfgsn~Cpdca~a~eyl~rl~v~yd------~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall-~~d~ 73 (85)
T COG4545 3 KPK--LFGSNLCPDCAPAVEYLERLNVDYD------FVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALL-TDDG 73 (85)
T ss_pred Cce--eeccccCcchHHHHHHHHHcCCCce------eeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEE-eCCC
Confidence 563 4999999999988888776644433 44443 23433 4567778999964 4677
Q ss_pred eEE
Q 032338 88 KHI 90 (142)
Q Consensus 88 ~~~ 90 (142)
+.+
T Consensus 74 ~vV 76 (85)
T COG4545 74 KVV 76 (85)
T ss_pred cEE
Confidence 766
No 220
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=93.48 E-value=0.69 Score=28.63 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-chhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccc
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 108 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~ 108 (142)
++.++|+.|++..-.++...- .+.+..++..+ ..++.+...-..+|++. .+|..+. +
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~----------------d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT----------------D 59 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE----------------S
T ss_pred CCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe----------------C
Confidence 678999999998777664322 35566777655 35677777778999974 6677552 2
Q ss_pred hhHHHHHHHHHHH
Q 032338 109 KQEFIDIVETVYR 121 (142)
Q Consensus 109 ~~~l~~~l~~~~~ 121 (142)
-..+++.|++.+.
T Consensus 60 S~~I~~yL~~~~~ 72 (75)
T PF13417_consen 60 SAAIIEYLEERYP 72 (75)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcC
Confidence 3667888877654
No 221
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.48 E-value=0.2 Score=30.66 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=37.8
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-chhHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|+++||+.|++..-.+++..- .+.+..+|... .+++.+......+|++. ..+|..+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~-~~~g~~l 60 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV-LGNGTVI 60 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE-ECCCcEE
Confidence 3789999999998877775533 34555666543 35666666778999962 2346554
No 222
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.96 E-value=0.41 Score=29.15 Aligned_cols=56 Identities=4% Similarity=-0.083 Sum_probs=32.2
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.++|++|++.+-.+....-. +....+|........+...-..+|++ +..+|..+
T Consensus 4 y~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L-~~~~~~~l 59 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPIL-EKDDGSFM 59 (71)
T ss_pred EecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEE-EeCCCeEe
Confidence 6788999999988877755332 33334454333233333344678995 33335444
No 223
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.94 E-value=0.08 Score=35.35 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=28.5
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc----hhHHhhcCcCCC
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDP 78 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~I~~~ 78 (142)
.-|+.++|+.|++....|++. .+.+-.+|+.++ .++.+-.+-.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~ 50 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGL 50 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCC
Confidence 358999999999998877754 344446666543 344444444443
No 224
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=92.87 E-value=0.078 Score=34.48 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=43.6
Q ss_pred EecCCCHHHHHHHHHHHHHHHHh-cCceEEEEEeCCCchhHHhhcCcCCCcEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETI-KNFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~ 81 (142)
|-|..-+..+.....+..+.++. .+.+.+-.||+.++|++|+.++|-.+||+
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtL 55 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTL 55 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceE
Confidence 44555566788888888888874 55899999999999999999999999995
No 225
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=92.83 E-value=0.3 Score=28.49 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=35.9
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch--hHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP--DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~--~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|+.++|+.|++..-.+....-. +....++.+... ++.+...-..+|++ ..+|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l--~~~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP----YELVPVDLGEGEQEEFLALNPLGKVPVL--EDGGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEeCCCCCCCHHHHhcCCCCCCCEE--EECCEEE
Confidence 37789999999988888766332 344455544332 25556667789985 3346544
No 226
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.50 E-value=0.76 Score=28.63 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc----hhHHhhcCcCCCcEEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTVM 82 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~I~~~Pt~~ 82 (142)
-++.++|+.|++..-.+.+..-. +. .++++.. +++.+...-..+|+++
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~gi~----y~--~~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTELELD----VI--LYPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred EecCCCCchHHHHHHHHHHcCCc----EE--EEECCCChHHHHHHHHhCCCCcccEEE
Confidence 36778999999987777755332 22 3444332 3444444557799963
No 227
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=92.11 E-value=0.03 Score=44.85 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 16 QAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 16 ~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.++..++...|-+.||+.||+-.+..+|.+.-...-+..--.+..=+....+.....|++.+.|+.++..
T Consensus 69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred HhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec
Confidence 3444445668999999999999999888887666655421223322244567888999999999987653
No 228
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.94 E-value=0.24 Score=30.03 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=36.1
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC----CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|+.++|+.|++..-.+....-. +....+|.. ..+++.+...-..+|++.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~l 63 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTVI 63 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCEE
Confidence 37788999999998887765333 334455542 2345666666678999643 344433
No 229
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.52 E-value=0.79 Score=35.82 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=36.7
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
..+|+.++...+.|||.|...+=.|-..-.+|. ++.+ .-+..+. -+ .-..+||++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l-~~~~S~~---~d--~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSL-EYHYSDP---YD--NYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcC-Ceee-EEeecCc---cc--CCCCCCeEEEec
Confidence 458999999999999999987755544445555 3422 2222221 11 125799986654
No 230
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.95 E-value=1.5 Score=26.51 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=34.9
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-hhHHhhcCcCCCcEEEEEECCeE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
-|+.++|+.|++..-.+++..-. +....+|.... +++.+......+|++ ..+|..
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l--~~~~~~ 58 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTL--VDRDLV 58 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEE--EECCEE
Confidence 46789999999988877655433 33444554432 456665566789985 344443
No 231
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.66 E-value=0.52 Score=36.29 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=30.3
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhh
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 123 (142)
...+++.||+++|||+| +|+. .++|+ .+.+.|.+.|+.+....
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~~-----------~V~Ga-q~~~v~~~al~~~~~~~ 216 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGKY-----------AVSGA-QPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHHCCCccCceEEE--cCcE-----------eecCC-CCHHHHHHHHHHHHhcc
Confidence 34688999999999876 4443 24555 35688888888875543
No 232
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.41 E-value=1.4 Score=31.51 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=42.3
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCc----CCCcEEEEEECCeEE
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHI 90 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I----~~~Pt~~~f~~g~~~ 90 (142)
.-++.|++|.|+-|+.....++. ..+.+-.++.++...+.++++| ++--|. ..+|..+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~--VI~Gy~v 87 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTA--VINGYYV 87 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEE--EEcCEEE
Confidence 34566999999999998777761 2355667777888888888887 566774 4578776
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.26 E-value=0.71 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP 67 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 67 (142)
-|+.++|+.|++....+++. .+.+-.+|+.+.+
T Consensus 3 iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 47999999999998888763 3556677776553
No 234
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=90.17 E-value=1.6 Score=31.85 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.8
Q ss_pred cCCCeEEEEEecCCC-HHHHHHHHHHHHHHHHhc---CceEEEEEeCC
Q 032338 21 EEERVVIIRFGHDWD-DTCMQMDEVLSSVAETIK---NFAVIYLVDIS 64 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC-~~C~~~~p~l~~la~~~~---~~v~~~~vd~d 64 (142)
-.+|+++|.|.-+.| ..|-.+...+.++.+++. .++.++.|.+|
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 358999999999999 678766666666655443 35666666555
No 235
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.17 E-value=0.25 Score=33.28 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=23.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 66 (142)
..|+.|||+.|++....|++. .+.+-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 358999999999988888754 234445665443
No 236
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.79 E-value=0.43 Score=33.44 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=23.3
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 66 (142)
.-|+.+||+.|++....|++. .+.+-.+|+.++
T Consensus 3 ~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCC
Confidence 458899999999988777644 344556666544
No 237
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.77 E-value=0.82 Score=31.67 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=25.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHhc
Q 032338 24 RVVIIRFGHDWDDTCMQMDEVLSSVAETIK 53 (142)
Q Consensus 24 k~vvv~F~a~WC~~C~~~~p~l~~la~~~~ 53 (142)
|.+++-|.-|-|+-|+....++.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 457788999999999999999988877654
No 238
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=89.03 E-value=4.9 Score=33.88 Aligned_cols=91 Identities=11% Similarity=0.284 Sum_probs=62.2
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHH-H-HH-HHHHhcCceEEEEEeCC--CchhHHhhcCcCCCcEEEEEE-CCeEEEEec
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEV-L-SS-VAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFF-RNKHIMIDL 94 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~-l-~~-la~~~~~~v~~~~vd~d--~~~~l~~~~~I~~~Pt~~~f~-~g~~~~~~~ 94 (142)
..++.|+|.|-+.-....++|... + .. ..+.+...++.++|+.- +...+++.|-+..+|.+.|+. .|..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe--- 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE--- 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE---
Confidence 345688888888888888888733 2 22 23333345777777754 446789999999999986664 477773
Q ss_pred CCCccccccccccchhHHHHHHHHHHH
Q 032338 95 GTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 95 g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
.+.|.+. .++|.+.|+++..
T Consensus 93 ------vitg~v~-adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 93 ------VITGFVT-ADELASSIEKVWL 112 (506)
T ss_pred ------Eeecccc-HHHHHHHHHHHHH
Confidence 4555554 6888888877644
No 239
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=88.95 E-value=1.3 Score=30.31 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC
Q 032338 40 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 40 ~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~ 86 (142)
.+.+....+.+-....-.. .++.-+|.+=++|+|..+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5566655555443221111 45566788889999999999877765
No 240
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=88.89 E-value=1 Score=32.94 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=26.0
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVD 62 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd 62 (142)
.|.-|+|+.|-...|.+.++..+++..+.+-.|=
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 4899999999999999999999998876654443
No 241
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.78 E-value=0.37 Score=32.66 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=32.1
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch----hHHhhcCcCCCcEEEEEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~I~~~Pt~~~f~ 85 (142)
-|+.++|+.|++....|++. .+.|-.+|+.+++ ++.+-.+..+.|.--++.
T Consensus 3 iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 48899999999988888753 3455566665443 344444445555444444
No 242
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=87.97 E-value=1.2 Score=27.37 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=29.5
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~ 82 (142)
-|+.++|+.|++.+-.+.+..-. +.+..+|.....++. .-+...+|++.
T Consensus 4 Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~~-~~~~~~vP~l~ 52 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEIK-WSSYKKVPILR 52 (77)
T ss_pred EEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHHH-HhCCCccCEEE
Confidence 47889999999998777655332 233333433223342 24556899963
No 243
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=87.27 E-value=0.59 Score=28.47 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=36.8
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC----chhHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|+.++|+.|++..-.+++..-. +....+|..+ .+++.+......+|++. .+|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 62 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV--DNGFVL 62 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEE--ECCEEE
Confidence 37899999999887777765433 4445566432 35666666667899973 345443
No 244
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=87.18 E-value=6.9 Score=26.18 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=47.4
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
..|.+.+++++.+.. .++++||-|+..--+ .....+.++|+.+.+.+.|+.... ..++..+++.. |.+++|.
T Consensus 3 ~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 3 KQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred eEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEEC
Confidence 467888999887753 325666666665433 356678889998877777755433 46777888765 5556663
No 245
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=86.13 E-value=2 Score=33.34 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC----ceEEEEEeCCC
Q 032338 17 AILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN----FAVIYLVDISE 65 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~----~v~~~~vd~d~ 65 (142)
.+.+..|+++||-+-..+|..|..-...|+.|..++.. ++.|+.||-..
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 34456789999999999999999988888888776642 68999999543
No 246
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=85.93 E-value=4.2 Score=30.65 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCCeEEEEEecCCCH-HHHHHHHHHHHHHHHhc----Cc--eEEEEEeCC-CchhHHhhcCc
Q 032338 22 EERVVIIRFGHDWDD-TCMQMDEVLSSVAETIK----NF--AVIYLVDIS-EVPDFNTMYEL 75 (142)
Q Consensus 22 ~~k~vvv~F~a~WC~-~C~~~~p~l~~la~~~~----~~--v~~~~vd~d-~~~~l~~~~~I 75 (142)
.+++++|.|.=+.|+ -|-.+...+.++.+++. .. +.++.+|-+ +.++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 589999999988884 69888877777776655 23 556667654 33666666766
No 247
>PRK12559 transcriptional regulator Spx; Provisional
Probab=85.43 E-value=0.88 Score=31.89 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=17.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHH
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSV 48 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~l 48 (142)
+..|+.++|+.|++....|++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 3458999999999988777654
No 248
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.43 E-value=1.2 Score=31.71 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=17.5
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
...+.+++|.++||+++ ||+.+
T Consensus 133 ~~~~~~~gi~gTPt~iI--nG~~~ 154 (178)
T cd03019 133 EKLAKKYKITGVPAFVV--NGKYV 154 (178)
T ss_pred HHHHHHcCCCCCCeEEE--CCEEE
Confidence 45678899999999754 78866
No 249
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.57 E-value=1.3 Score=30.13 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=22.7
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 66 (142)
-|+.++|+.|++....|++. .+.+-.+|+.++
T Consensus 4 iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 47889999999988888754 244446665543
No 250
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=6.1 Score=26.75 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEe-----cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcC-cCCCcEEE-E
Q 032338 11 GWAVDQAILTEEERVVIIRFG-----HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYE-LYDPSTVM-F 83 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~-----a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~-I~~~Pt~~-~ 83 (142)
.+.+++.|. ++ +|++ |. .|-|+.+.+...+|.... .+.|..+|+=+++++.+... .++.||+- +
T Consensus 5 ~~~I~~~i~--~n-~VvL-FMKGtp~~P~CGFS~~~vqiL~~~g-----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL 75 (105)
T COG0278 5 LDRIQKQIK--EN-PVVL-FMKGTPEFPQCGFSAQAVQILSACG-----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQL 75 (105)
T ss_pred HHHHHHHhh--cC-ceEE-EecCCCCCCCCCccHHHHHHHHHcC-----CcceeEEeeccCHHHHhccHhhcCCCCCcee
Confidence 345666664 34 4444 43 567777777776666443 26778899888888866443 24455543 6
Q ss_pred EECCeEE
Q 032338 84 FFRNKHI 90 (142)
Q Consensus 84 f~~g~~~ 90 (142)
|.+|+.+
T Consensus 76 yi~GEfv 82 (105)
T COG0278 76 YVNGEFV 82 (105)
T ss_pred eECCEEe
Confidence 7789988
No 251
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=82.28 E-value=2.7 Score=29.60 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=42.6
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEE
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~ 81 (142)
||+||. .+-+++-..... .+-++|+.=.-+. .+++....+.+-..+.-. ..+.-+|.+=++|+|..+|++
T Consensus 6 S~SMP~-~~Lk~l~~~a~~-~g~~~VlRG~~~~-----~~~~T~~~i~~L~~~~~~---~~v~IdP~lF~~f~I~~VPa~ 75 (130)
T TIGR02742 6 SFSMPE-PLLKQLLDQAEA-LGAPLVIRGLLDN-----GFKATATRIQSLIKDGGK---SGVQIDPQWFKQFDITAVPAF 75 (130)
T ss_pred EcCCCH-HHHHHHHHHHHH-hCCeEEEeCCCCC-----CHHHHHHHHHHHHhcCCC---CcEEEChHHHhhcCceEcCEE
Confidence 788887 334443222232 2446665533333 133343333332221111 444567888899999999999
Q ss_pred EEEECCe
Q 032338 82 MFFFRNK 88 (142)
Q Consensus 82 ~~f~~g~ 88 (142)
++.+++.
T Consensus 76 V~~~~~~ 82 (130)
T TIGR02742 76 VVVKDGL 82 (130)
T ss_pred EEECCCC
Confidence 8887664
No 252
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=82.27 E-value=2.8 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=16.4
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
...++.++|.++||+ +.||+.+
T Consensus 126 ~~~~~~~~i~~tPt~--~inG~~~ 147 (162)
T PF13462_consen 126 SQLARQLGITGTPTF--FINGKYV 147 (162)
T ss_dssp HHHHHHHT-SSSSEE--EETTCEE
T ss_pred HHHHHHcCCccccEE--EECCEEe
Confidence 356778999999996 4488876
No 253
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.29 E-value=5.5 Score=25.43 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=32.8
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-hhHHhhcCcCCCcEEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVM 82 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~~~I~~~Pt~~ 82 (142)
|+.+.|+.|++..-.+....- .+.+..+|.... +++.+......+|++.
T Consensus 22 y~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~ 71 (89)
T cd03055 22 YSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALE 71 (89)
T ss_pred EeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEE
Confidence 678889999988777765432 344556665443 3466666677899963
No 254
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=80.64 E-value=24 Score=27.23 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCCeEEEEEecCC------CHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhh----cCcCCCcE
Q 032338 22 EERVVIIRFGHDW------DDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTM----YELYDPST 80 (142)
Q Consensus 22 ~~k~vvv~F~a~W------C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~I~~~Pt 80 (142)
-++||-|.+|.+- -..=+.+...|++.+..-++++.+-.||.+.+++.+++ +||...+.
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 3457777777665 33334555555666555344899999999888776666 88877554
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=80.64 E-value=2 Score=30.08 Aligned_cols=33 Identities=6% Similarity=-0.015 Sum_probs=22.5
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 66 (142)
.-|+.++|+.|++....|++- .+.+-.+|+.++
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 347889999999987777643 344556665543
No 256
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=79.94 E-value=14 Score=26.24 Aligned_cols=108 Identities=9% Similarity=0.122 Sum_probs=51.7
Q ss_pred CcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHH-HHHHHHHH-HHHh-cCceEEEEEeCC--CchhHHhhcCc---C
Q 032338 5 LPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQ-MDEVLSSV-AETI-KNFAVIYLVDIS--EVPDFNTMYEL---Y 76 (142)
Q Consensus 5 l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~-~~p~l~~l-a~~~-~~~v~~~~vd~d--~~~~l~~~~~I---~ 76 (142)
..+|++.+++++.+.+.++ ..+| +-.+-|+---. .+|-.... ..+. .++.+-+....| .-.. +++|-. .
T Consensus 18 f~eL~T~e~Vd~~~~~~~G-TtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~-aR~yf~~~pP 94 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEG-TTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAK-AREYFEPYPP 94 (136)
T ss_dssp -EE--SHHHHHHHHHH--S-EEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHH-HHHTSTTS--
T ss_pred ccccCCHHHHHHHHhCCCC-cEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHH-HHHhcCCCCC
Confidence 3568899999999985444 3333 24566874433 34444332 2222 233333333333 2222 334332 5
Q ss_pred CCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 77 DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 77 ~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
+-|++-+||+|+.+.+- ... .+-| .+.+++.+.|..++.
T Consensus 95 SSPS~ALfKdGelvh~i--eRh--~IEG--r~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFI--ERH--HIEG--RPAEEIAENLQDAFD 133 (136)
T ss_dssp -SSEEEEEETTEEEEEE---GG--GTTT--S-HHHHHHHHHHHHH
T ss_pred CCchheeeeCCEEEEEe--ehh--hcCC--CCHHHHHHHHHHHHH
Confidence 68999999999987531 111 1223 235666666666543
No 257
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.79 E-value=3 Score=30.11 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcC
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~ 54 (142)
|..|+-+.||.|....+.+.++.+++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 4578899999999999999999999843
No 258
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.72 E-value=3.2 Score=29.85 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=16.8
Q ss_pred chhHHhhcCcCCCcEEEEEECCe
Q 032338 66 VPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 66 ~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+...+.+++|.++||+++ +|+
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~ 176 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK 176 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT
T ss_pred HHHHHHHcCCcccCEEEE--CCE
Confidence 345678899999999877 777
No 259
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=78.69 E-value=1.6 Score=32.02 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=16.3
Q ss_pred chhHHhhcCcCCCcEEEEEE
Q 032338 66 VPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 66 ~~~l~~~~~I~~~Pt~~~f~ 85 (142)
+..++++++|++.||+++|.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHHcCCCCCCEEEEEe
Confidence 46789999999999999997
No 260
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=78.35 E-value=10 Score=24.84 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=24.0
Q ss_pred ceEEEEEeCCCchhHHhhc--------CcCCCcEEEEEECCeEE
Q 032338 55 FAVIYLVDISEVPDFNTMY--------ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 55 ~v~~~~vd~d~~~~l~~~~--------~I~~~Pt~~~f~~g~~~ 90 (142)
.+.|-.+|++.+++..+.+ +-.++|- +|.+++.+
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQ--IFi~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQ--IFNGDEYC 71 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCE--EEECCEEe
Confidence 5788899998777654432 3367787 46788877
No 261
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.00 E-value=2 Score=31.35 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=16.1
Q ss_pred chhHHhhcCcCCCcEEEEEECCeE
Q 032338 66 VPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 66 ~~~l~~~~~I~~~Pt~~~f~~g~~ 89 (142)
+...+.+.||.++||+++ +|+.
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~ 185 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY 185 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE
Confidence 345677889999999654 6653
No 262
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.23 E-value=3.7 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=34.1
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC----chhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.++|+.|++..-.++...-+ +....+|... .+++.+...-..+|++. .+|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~i 62 (73)
T cd03056 4 YGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLE--LDGRVL 62 (73)
T ss_pred EeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEE--ECCEEE
Confidence 6788999999887777755333 4444555432 23455544556899964 345544
No 263
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=76.49 E-value=3.9 Score=30.52 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.2
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
...+++++|+++||++ .||+.+
T Consensus 157 ~~~a~~~gI~gtPtfi--InGky~ 178 (207)
T PRK10954 157 EKAAADLQLRGVPAMF--VNGKYM 178 (207)
T ss_pred HHHHHHcCCCCCCEEE--ECCEEE
Confidence 4567889999999964 488875
No 264
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=76.32 E-value=1.3 Score=38.52 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=54.1
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHH-H--HHHHHHhcCceEEEEEeCCCchhHHh--------hcCcCCC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEV-L--SSVAETIKNFAVIYLVDISEVPDFNT--------MYELYDP 78 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~~--------~~~I~~~ 78 (142)
..+.|+++- .+++|+++-..-+.|.-|+.|... + ++.++.+.++++-++||.++-|++-+ ..+=-+.
T Consensus 101 gqeaf~kar--~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 101 GQEAFNKAR--AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred hHHHHHHHH--hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 356788864 357999999999999999998755 2 34666666678888999999888755 3344567
Q ss_pred cEEEEEE
Q 032338 79 STVMFFF 85 (142)
Q Consensus 79 Pt~~~f~ 85 (142)
|.-+|.-
T Consensus 179 PmsV~LT 185 (786)
T KOG2244|consen 179 PMSVFLT 185 (786)
T ss_pred ceeEEeC
Confidence 7766553
No 265
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=75.19 E-value=2.4 Score=29.11 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=16.2
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
..++.+++|.++||+++ +|+.+
T Consensus 119 ~~~~~~~gi~gtPt~~v--~g~~~ 140 (154)
T cd03023 119 RQLARALGITGTPAFII--GDTVI 140 (154)
T ss_pred HHHHHHcCCCcCCeEEE--CCEEe
Confidence 45677899999999644 67644
No 266
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=74.92 E-value=34 Score=25.83 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=61.4
Q ss_pred CCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCC----------------------------chhHHh
Q 032338 22 EERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 71 (142)
-++.+|+.|| ++--+-|=.....+.+..++|+. ++.++-+.+|. +.++++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 3578888888 77778887766667776666654 56666555543 456777
Q ss_pred hcCcCCCc------EEEEEE-CCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 72 MYELYDPS------TVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 72 ~~~I~~~P------t~~~f~-~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
.|++.... .+.++. +|....+..- ...-+ ++.+|++..++.+.....+ ...|-+=|++
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~-----~~~iG-Rn~dEilR~idAlq~~~~h-g~vcPanW~~ 176 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVN-----PLTIG-RNVDEILRVIDALQFVAKH-GEVCPANWKP 176 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEe-----cCCCC-cCHHHHHHHHHHHHHHHHh-CCCccCCCCC
Confidence 77774322 222232 3432221110 01101 3468888888887655555 4556555654
No 267
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=73.02 E-value=17 Score=22.26 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=36.0
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC----CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|+.+.|+.|++..-.+++..- .+.+..+|.. ..+++.+...-..+|++. .+|..+
T Consensus 3 ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 3 LYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 4778889999887766654433 3555666653 234566666667899974 466544
No 268
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=72.68 E-value=6.1 Score=26.25 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=35.0
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcC--CCcEEEE-EECCe
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMF-FFRNK 88 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~--~~Pt~~~-f~~g~ 88 (142)
||-.+|+-|......+.+... .+.+.|+.+..+...++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 688999999999988887722 234555444334444555666764 3444444 35666
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.77 E-value=4.7 Score=29.08 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=18.2
Q ss_pred chhHHhhcCcCCCcEEEEEECCe
Q 032338 66 VPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 66 ~~~l~~~~~I~~~Pt~~~f~~g~ 88 (142)
+...+.+++|.++||+++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 34567789999999998887655
No 270
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.74 E-value=14 Score=26.41 Aligned_cols=40 Identities=10% Similarity=-0.117 Sum_probs=31.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCCCc
Q 032338 27 IIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDISEV 66 (142)
Q Consensus 27 vv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~ 66 (142)
|..|+..-||.|....+.+.++.+++.+ .+.+.-+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 5678999999999999999999999833 455555554433
No 271
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.96 E-value=21 Score=24.51 Aligned_cols=81 Identities=10% Similarity=0.130 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-hHHhhcC--cCCCcEEEEEECCeEEEEecCCCccccccccccchhH
Q 032338 35 DDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYE--LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQE 111 (142)
Q Consensus 35 C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~~~--I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~ 111 (142)
|++|..|.-.|...-. +...+.+..||...-. ++.+..| =++.|++ ++.+|....-+.++.... -.+.+.+.
T Consensus 24 Cp~c~~iEGlLa~~P~-l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvL-VL~~~~~~~~~~~~~~~~---rfi~d~~~ 98 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPD-LRERLDVRRVDFPRPRQAVIALLGEANQSLPVL-VLADGAPSPDDAGSHGGR---RFIDDPRR 98 (112)
T ss_pred CCchHHHHhHHhhChh-hhhcccEEEeCCCCchHHHHHHhChhccCCCEE-EeCCCCCCcccccccCCe---EEeCCHHH
Confidence 9999999888765433 2346778888876532 3444333 2789996 555665443222211111 24567788
Q ss_pred HHHHHHHHH
Q 032338 112 FIDIVETVY 120 (142)
Q Consensus 112 l~~~l~~~~ 120 (142)
+++.|.+-|
T Consensus 99 I~~~La~r~ 107 (112)
T PF11287_consen 99 ILRYLAERH 107 (112)
T ss_pred HHHHHHHHc
Confidence 888777654
No 272
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.36 E-value=12 Score=28.43 Aligned_cols=47 Identities=4% Similarity=-0.008 Sum_probs=33.4
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
..+.+++++.++||+++-.||+...+..| . .+.+.++++.++.+..+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g-----~---y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTG-----A---YFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCC-----c---ccCCcHHHHHHHHHHHh
Confidence 45788999999999999999987654332 1 12345778887776543
No 273
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=5.3 Score=30.79 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=40.9
Q ss_pred CeEEEEEe-----cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCc-CCCcEEE-EEECCeEE
Q 032338 24 RVVIIRFG-----HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVM-FFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~-----a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I-~~~Pt~~-~f~~g~~~ 90 (142)
++|+| |. .|-|+-.+++..++... ++.+...|+-.+.++.+.... +..|||- +|-+|+-+
T Consensus 139 ~~v~l-FmKG~p~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 139 KPVML-FMKGTPEEPKCGFSRQLVGILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred CeEEE-EecCCCCcccccccHHHHHHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 56665 54 67888888888887754 344667888777777664442 4566653 67789877
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=64.86 E-value=3.8 Score=29.52 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=16.6
Q ss_pred hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.+.+.++||.++||+++ +|+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~~~ 178 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGEMF 178 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCeee
Confidence 45677889999999755 67654
No 275
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=16 Score=27.52 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhc
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIK 53 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~ 53 (142)
+++.++.|.-.-|++|+.+.|.+.+......
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 3678888999999999888888877555433
No 276
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.77 E-value=37 Score=28.51 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=51.1
Q ss_pred HHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 18 ILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 18 i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|..-++..-+=.|++-.|..|-..-.-|.-. .-+.+++.-..||---.++=.+.-+|.++|| +|.||+..
T Consensus 111 ik~i~g~~~FETy~SltC~nCPDVVQALN~m-svlNp~I~H~~IdGa~Fq~Evear~IMaVPt--vflnGe~f 180 (520)
T COG3634 111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLM-SVLNPRIKHTAIDGALFQDEVEARNIMAVPT--VFLNGEEF 180 (520)
T ss_pred HHhcCCceeEEEEEEeeccCChHHHHHHHHH-HhcCCCceeEEecchhhHhHHHhccceecce--EEEcchhh
Confidence 4444566777778888899997665555533 3456688888898776666666778999999 57888865
No 277
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.31 E-value=8.9 Score=26.09 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=21.6
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS 64 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 64 (142)
.-|+.|.|..|++....|++-. +.+-.+|+-
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~g------i~~~~~d~~ 33 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAAG------HEVEVRDLL 33 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHcC------CCcEEeehh
Confidence 3488999999999887777543 344455544
No 278
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=60.18 E-value=46 Score=21.78 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=42.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCch-hHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchh
Q 032338 32 HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 110 (142)
Q Consensus 32 a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~ 110 (142)
..+|+.|++..-.+.+..- .+.+..+|....+ .+.+..-...+|++. .+|..+ .+-.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi----~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i----------------~eS~ 76 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV----VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK----------------TDNN 76 (91)
T ss_pred CCCChhHHHHHHHHHHCCC----ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe----------------cCHH
Confidence 3679999998877765421 3555667766544 455545557899753 455444 1236
Q ss_pred HHHHHHHHHHH
Q 032338 111 EFIDIVETVYR 121 (142)
Q Consensus 111 ~l~~~l~~~~~ 121 (142)
.+.+.|++.+.
T Consensus 77 ~I~eYLde~~~ 87 (91)
T cd03061 77 KIEEFLEETLC 87 (91)
T ss_pred HHHHHHHHHcc
Confidence 67777777643
No 279
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=59.46 E-value=24 Score=27.59 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=45.9
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHhcCceE--EEEEeCCC----------------chhHHhhcCcCCCcEEEEEECC
Q 032338 26 VIIRFGHDWDDTCMQMDEVLSSVAETIKNFAV--IYLVDISE----------------VPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 26 vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~--~~~vd~d~----------------~~~l~~~~~I~~~Pt~~~f~~g 87 (142)
||=-|.+.-|..|=.....+.+++++ . .+. -+.||..+ ...+++.++-++++|=..+-||
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~-~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD-P-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC-C-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 44447788999999999999999887 2 333 34555432 2456778888999998888888
Q ss_pred eEE
Q 032338 88 KHI 90 (142)
Q Consensus 88 ~~~ 90 (142)
+..
T Consensus 122 r~~ 124 (261)
T COG5429 122 RVH 124 (261)
T ss_pred hhh
Confidence 754
No 280
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=59.11 E-value=57 Score=22.51 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=61.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEeCCCchhHHh----hcCcC-CCcEEEEEE--CCeEEEEe
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNT----MYELY-DPSTVMFFF--RNKHIMID 93 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~----~~~I~-~~Pt~~~f~--~g~~~~~~ 93 (142)
+...++-|--+-.+.-.++.+++.++|+++.. +..|+-||-|+.|-+.. .|+|. .-|.+=+.. +..-+.++
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 34677889999999999999999999999754 68899999999987655 44542 246655553 22333322
Q ss_pred cCCCccccccccccchhHHHHHHHHH
Q 032338 94 LGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 94 ~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
.... . ..++.++|.++|+.+
T Consensus 100 m~~~--~----d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDD--E----DLPTAEELEDWIEDV 119 (120)
T ss_pred cccc--c----ccCcHHHHHHHHHhh
Confidence 2111 0 224568888888764
No 281
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=58.79 E-value=26 Score=21.01 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=34.3
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC----CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.+.|+.|++..-.++...-. +....+|.. ..+++.+..-...+|++. .+|..+
T Consensus 5 y~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l 63 (76)
T cd03053 5 YGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKL 63 (76)
T ss_pred EeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEE
Confidence 4566699999988877765433 344455543 234566666678899863 455544
No 282
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=58.67 E-value=18 Score=29.66 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCchhHHhhcCcCCCcEEEEEEC--CeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcC
Q 032338 55 FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR--NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
Q Consensus 55 ~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~--g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g 126 (142)
.+..+..|..+.+.+..-|.+.++|.+.+++. |+.+ .++.|.++ .++|+.-+++-.....++
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v---------~~ws~vi~-~~~fl~~l~~Fi~~~~~d 195 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERV---------KRWSGVIE-PEQFLSDLNEFIDSCPHD 195 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhh---------hhhccccC-HHHHHHHHHHHHhcCCcc
Confidence 45556667777788999999999997766653 5655 35667777 788888888876666555
No 283
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=58.17 E-value=61 Score=22.55 Aligned_cols=63 Identities=6% Similarity=0.017 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCceEEEEEeCCCch----------hHHhhcCcCCCcEEEEEECCeEEEEecCCCccccccccccchh
Q 032338 41 MDEVLSSVAETIKNFAVIYLVDISEVP----------DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 110 (142)
Q Consensus 41 ~~p~l~~la~~~~~~v~~~~vd~d~~~----------~l~~~~~I~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~ 110 (142)
+...++.+.+ ..+.+.+.|...+| ++.+.-|...+|-+ +-||+.+ ..|..++.+
T Consensus 29 ~a~~~~~Lk~---~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPit--lVdGeiv-----------~~G~YPt~e 92 (123)
T PF06953_consen 29 FAADLDWLKE---QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPIT--LVDGEIV-----------KTGRYPTNE 92 (123)
T ss_dssp HHHHHHHHHH---TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEE--EETTEEE-----------EESS---HH
T ss_pred HHHHHHHHHh---CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEE--EECCEEE-----------EecCCCCHH
Confidence 4444454533 26889999988754 23445677899984 5589877 356667788
Q ss_pred HHHHHHHHH
Q 032338 111 EFIDIVETV 119 (142)
Q Consensus 111 ~l~~~l~~~ 119 (142)
+|.+++.--
T Consensus 93 El~~~~~i~ 101 (123)
T PF06953_consen 93 ELAEWLGIS 101 (123)
T ss_dssp HHHHHHT--
T ss_pred HHHHHhCCC
Confidence 888887543
No 284
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=56.94 E-value=67 Score=22.70 Aligned_cols=92 Identities=10% Similarity=0.085 Sum_probs=56.2
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHHH---HHHHHHhcCceEEEEEeCCCch------------------hHHhhcCcCCCc
Q 032338 21 EEERVVIIRFGHDWDDTCMQMDEVL---SSVAETIKNFAVIYLVDISEVP------------------DFNTMYELYDPS 79 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~------------------~l~~~~~I~~~P 79 (142)
.+.|+++|+.+.|-...+..+-.-+ +.+.+-++.++++.--|++... ..++.++...+|
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 3478999999999885543332211 2333333457888888876532 245667889999
Q ss_pred EEEEEECCe-EEEEecCCCccccccccccchhHHHHHHHHH
Q 032338 80 TVMFFFRNK-HIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 80 t~~~f~~g~-~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~ 119 (142)
.+.+.-... ...+ -.++.|.. +.+++++.|.+.
T Consensus 99 ~~avI~~~~~~~~v------l~~i~G~~-~~~ell~~L~~~ 132 (136)
T cd02990 99 AILIIMGKRSSNEV------LNVIQGNT-GVDELLMRLIEA 132 (136)
T ss_pred eEEEEEecCCceEE------EEEEECCC-CHHHHHHHHHHH
Confidence 998885321 1100 03455554 468888877664
No 285
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=56.26 E-value=13 Score=24.23 Aligned_cols=24 Identities=4% Similarity=0.092 Sum_probs=19.1
Q ss_pred hhHHhhcCcCCCcEEEEEE-CCeEE
Q 032338 67 PDFNTMYELYDPSTVMFFF-RNKHI 90 (142)
Q Consensus 67 ~~l~~~~~I~~~Pt~~~f~-~g~~~ 90 (142)
.++++.|++.++|+.++++ +|+..
T Consensus 85 ~~~~~~~~~~~~P~~~vid~~G~v~ 109 (114)
T cd02967 85 AELGMAYQVSKLPYAVLLDEAGVIA 109 (114)
T ss_pred HHHHhhcCCCCcCeEEEECCCCeEE
Confidence 4588999999999998886 45544
No 286
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.32 E-value=14 Score=27.96 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=18.4
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHH
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSSVA 49 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~la 49 (142)
...+.|..++|++|++....+..+.
T Consensus 120 ~~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 120 LREFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred EEEeecCCCCcHHHHHHHHHHHHhc
Confidence 5666789999999988766555443
No 287
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=54.91 E-value=26 Score=30.97 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=51.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCHHH------HHHHHHHHHHHH----------HhcCceEEEEEe-CCC--ch--hH
Q 032338 11 GWAVDQAILTEEERVVIIRFGHDWDDTC------MQMDEVLSSVAE----------TIKNFAVIYLVD-ISE--VP--DF 69 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~a~WC~~C------~~~~p~l~~la~----------~~~~~v~~~~vd-~d~--~~--~l 69 (142)
++++.+++. .++||+|.=.|+--+.| +++.|.++++.. ....+..||.++ +.. +- +-
T Consensus 333 Ak~irrAV~--egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED 410 (715)
T COG1107 333 AKEIRRAVL--EGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALED 410 (715)
T ss_pred HHHHHHHHh--cCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCcccCCceeHHhhhhhHHHHHHH
Confidence 566777776 47999999999999999 667788877543 122356677665 221 22 22
Q ss_pred HhhcCcCCCcEEEEEECCe
Q 032338 70 NTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 70 ~~~~~I~~~Pt~~~f~~g~ 88 (142)
++.++ +.+|-+++..||.
T Consensus 411 ~~RhG-qKlPL~VlvDnGs 428 (715)
T COG1107 411 AHRHG-QKLPLLVLVDNGS 428 (715)
T ss_pred HHhcC-CccceEEEEcCCC
Confidence 44555 6788888888874
No 288
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=53.04 E-value=38 Score=20.18 Aligned_cols=58 Identities=5% Similarity=-0.056 Sum_probs=34.0
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC-CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.+.|+.|++..-.+..... +-.+....+|.. ..+++.+......+|++.. .+|..+
T Consensus 4 y~~~~s~~~~~~~~~l~~~~~--~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 4 LYSPTSPYVRKVRVAAHETGL--GDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred ecCCCCcHHHHHHHHHHHhCC--CCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 578889999987776665211 113444555532 2345655556678998632 345444
No 289
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=49.52 E-value=5.3 Score=21.67 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=8.1
Q ss_pred CceeeccCCch
Q 032338 127 RGLVIAPKDYS 137 (142)
Q Consensus 127 ~~~~~~~~~~~ 137 (142)
.|+|+|||++.
T Consensus 16 TGvVRsP~eYp 26 (36)
T PF10413_consen 16 TGVVRSPYEYP 26 (36)
T ss_dssp TSHHS-TTTSH
T ss_pred cccccCCCcCc
Confidence 58999999954
No 290
>PRK10387 glutaredoxin 2; Provisional
Probab=48.17 E-value=85 Score=22.68 Aligned_cols=56 Identities=5% Similarity=-0.035 Sum_probs=31.1
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.+.|++|++..-.++...-. +....++..+.....+......+|+++. .+|..+
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l 59 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEATPIRMIGQKQVPILQK-DDGSYM 59 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeEe
Confidence 4567799999987776655433 3333444433222223333457999632 455544
No 291
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=47.22 E-value=60 Score=19.27 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=13.7
Q ss_pred cCCCHHHHHHHHHHHHH
Q 032338 32 HDWDDTCMQMDEVLSSV 48 (142)
Q Consensus 32 a~WC~~C~~~~p~l~~l 48 (142)
.+||+.|++..-.+...
T Consensus 13 ~s~sp~~~~v~~~L~~~ 29 (72)
T cd03054 13 PSLSPECLKVETYLRMA 29 (72)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 46999999988887753
No 292
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=46.61 E-value=44 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHH--------HHHHHHHHHHHHhcCceEE
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCM--------QMDEVLSSVAETIKNFAVI 58 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~--------~~~p~l~~la~~~~~~v~~ 58 (142)
+.+++..++....++++|| |+||- ..+..|..+++++++...+
T Consensus 39 ~R~~i~~Il~G~DdRLlvV------iGPCSiHD~~AAleYA~RL~~l~e~~~d~L~i 89 (351)
T COG0722 39 SRKEIEDILHGEDDRLLVV------IGPCSIHDPEAALEYARRLKALREELKDRLEI 89 (351)
T ss_pred HHHHHHHHhcCCCCcEEEE------EeCCccCCHHHHHHHHHHHHHHHHHhhCceEE
Confidence 4567777777677788887 78882 3445566778888875443
No 293
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=45.48 E-value=49 Score=23.43 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=3.1
Q ss_pred CHHHHH
Q 032338 35 DDTCMQ 40 (142)
Q Consensus 35 C~~C~~ 40 (142)
|+.||+
T Consensus 88 CG~CRQ 93 (134)
T COG0295 88 CGACRQ 93 (134)
T ss_pred cHHHHH
Confidence 555554
No 294
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=45.46 E-value=78 Score=23.19 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=37.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
..+--|+.++|+.|++..-.+++..- .+.+..+|.+.. +++.+..--..+|++. .+|..+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 33444566789999998877765432 355567776543 3566554556899974 455544
No 295
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=44.99 E-value=66 Score=19.78 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhh---cCcCCCcEE
Q 032338 32 HDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTM---YELYDPSTV 81 (142)
Q Consensus 32 a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~---~~I~~~Pt~ 81 (142)
-+||+.|++..-.+....-. +....++..+....... -....+|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~L 61 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE----YKTVPVEFPDIPPILGELTSGGFYTVPVI 61 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC----CeEEEecCCCcccccccccCCCCceeCeE
Confidence 47899999988877754333 34445554433322222 224578986
No 296
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=43.97 E-value=22 Score=24.04 Aligned_cols=31 Identities=6% Similarity=-0.128 Sum_probs=22.2
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~ 65 (142)
-|+.+.|..|++....+++. .+.+-.+|+-+
T Consensus 3 iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 47899999999988888753 34444566543
No 297
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=43.46 E-value=23 Score=23.80 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=21.6
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~ 65 (142)
-|+.+.|..|++....+++. .+.+-.+|+-+
T Consensus 3 iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 3 IYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 47899999999987777644 34444566543
No 298
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=43.16 E-value=27 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.2
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHh
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETI 52 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~ 52 (142)
-|+.|.|..|+.....+++..-+|
T Consensus 5 iy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 5 IYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred EEeCCCChHHHHHHHHHHHcCCCc
Confidence 488999999999998888654443
No 299
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=42.14 E-value=32 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=20.3
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 66 (142)
|+-+.|..|++....|++- .+.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 5778999999998888753 345557887653
No 300
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=80 Score=24.43 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~ 91 (142)
|.--.|..|..+-..+++-. +-+++. .+|.+.-+.++-+-+|-++|. +|+||+.+.
T Consensus 16 ~~HktC~ssy~Lf~~L~nkg--ll~~Vk--ii~a~~p~f~~~~~~V~SvP~--Vf~DGel~~ 71 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENKG--LLGKVK--IIDAELPPFLAFEKGVISVPS--VFIDGELVY 71 (265)
T ss_pred EEecchHHHHHHHHHHHhcC--CCCCce--EEEcCCChHHHhhcceeecce--EEEcCeEEE
Confidence 55667999988776665411 112344 456666677777778999999 578898763
No 301
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=40.71 E-value=48 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.4
Q ss_pred CccCcccCChHHHHHHHHhcCCCeEEEEEec
Q 032338 2 SYLLPHLHSGWAVDQAILTEEERVVIIRFGH 32 (142)
Q Consensus 2 ~~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a 32 (142)
|.==|+.-+++++-++|.+..+.||+|.|--
T Consensus 31 S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD 61 (180)
T PF14097_consen 31 SAGNPTPLSGEELVELIKQAPHDPVLVMFDD 61 (180)
T ss_pred cCCCCCcCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 3334666678999899998889999999964
No 302
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=39.62 E-value=1.4e+02 Score=21.97 Aligned_cols=56 Identities=5% Similarity=-0.056 Sum_probs=29.9
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.+.|++|++..-.+....-.| ....++.++.....+......+|++.. .+|..+
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAM 58 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcchhHHHhcCCCCcceEEe-eCCeEe
Confidence 45677999998777776554332 222333333222333333467998632 456544
No 303
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=38.83 E-value=65 Score=20.47 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHHhcCceEEEEEeCCCchhHHhhcCc-CCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 45 LSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 45 l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I-~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
|++++..+. ++ ..|.+..+.+. +.+ ..-.|+.+|..|+.+ ++|+ ++.++..+.++++++
T Consensus 21 L~~la~~~~-~~---~YePe~fpgl~--~r~~~p~~t~~IF~sGki~-----------itGa-ks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 21 LEELAEELE-NV---EYEPERFPGLI--YRLRNPKATVLIFSSGKIV-----------ITGA-KSEEEAKKAIEKILP 80 (86)
T ss_dssp HHHHHHHST-TE---EEETTTESSEE--EEETTTTEEEEEETTSEEE-----------EEEE-SSHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-Cc---EEeeccCCeEE--EeecCCcEEEEEEcCCEEE-----------EEec-CCHHHHHHHHHHHHH
Confidence 455555542 22 44444444432 222 235788888889876 3333 345666666665543
No 304
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=38.36 E-value=80 Score=18.95 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=34.4
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC---CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS---EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d---~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
|+.+-|+.|++..-.++...- .+.+..+|.. ..+++.+..-...+|++.. .+|..+
T Consensus 4 y~~~~~~~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l 62 (75)
T cd03044 4 YTYPGNPRSLKILAAAKYNGL----DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL 62 (75)
T ss_pred ecCCCCccHHHHHHHHHHcCC----ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE
Confidence 566778888887766664422 3555666654 2355666556678999632 345444
No 305
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.33 E-value=1.3e+02 Score=23.44 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEE
Q 032338 36 DTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 36 ~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~ 91 (142)
.+|..|+..+.+++++++.-++++--|+.-....++ .++.+++|+.+.
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD--------~IVAlK~G~vv~ 216 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINFASCYSD--------HIVALKNGKVVK 216 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhh--------heeeecCCEEEe
Confidence 789999999999999998766666666654333333 356789999873
No 306
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=38.25 E-value=38 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=16.9
Q ss_pred CCeEEEEE---ecCCCHHHHHHHHH
Q 032338 23 ERVVIIRF---GHDWDDTCMQMDEV 44 (142)
Q Consensus 23 ~k~vvv~F---~a~WC~~C~~~~p~ 44 (142)
..++||.| |.-||.-|+.+..+
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred cceEEEEEecccchhhccHHHhhhc
Confidence 35888999 45699999887654
No 307
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=38.05 E-value=1.7e+02 Score=21.99 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=45.2
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEE--EEEeCCC----------------chhHHhhcCcCCCcEEEEEECCeEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVI--YLVDISE----------------VPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~--~~vd~d~----------------~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
-|.+..|..|=.....|.+++.+ . ++.. +.||..+ ....++.++.+++-|=-++-||+.-
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 37889999999999999999998 3 4444 4555433 2346667777775555567788764
Q ss_pred EEecCCCccccccccccchhHHHHHHHHHHHh
Q 032338 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 122 (142)
. .|. +..++...|+...+.
T Consensus 82 ~-----------~g~--~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 82 R-----------VGS--DRAAVEAAIQAARAR 100 (202)
T ss_dssp E-----------ETT---HHHHHHHHHHHHHT
T ss_pred e-----------ecc--CHHHHHHHHHHhhcc
Confidence 2 221 345666666665443
No 308
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=38.02 E-value=14 Score=22.94 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=15.8
Q ss_pred EEEEECCeEEEEecCCCcccc-ccccccchhHHHHHH
Q 032338 81 VMFFFRNKHIMIDLGTGNNNK-INWALKDKQEFIDIV 116 (142)
Q Consensus 81 ~~~f~~g~~~~~~~g~~~~~~-~~~~~~~~~~l~~~l 116 (142)
|-+.-||+.+. .+ ..+.+++.+++.+.|
T Consensus 43 Fev~~~g~~v~--------sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 43 FEVTVNGQLVW--------SKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEECCEEEE--------EeccCCCCCCHHHHHHhh
Confidence 34445777664 22 224566777777654
No 309
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=36.71 E-value=1e+02 Score=22.07 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 032338 23 ERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDIS 64 (142)
Q Consensus 23 ~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 64 (142)
+.-+.+.++++.++.|..+.-.++.+|+.|.+ .+.+-.++..
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678889999999999999999999999987 6666655543
No 310
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=36.56 E-value=2e+02 Score=22.74 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC-ceEEEEEe
Q 032338 33 DWDDTCMQMDEVLSSVAETIKN-FAVIYLVD 62 (142)
Q Consensus 33 ~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd 62 (142)
+|.-||+.+..++-.+++++.. .+.+++.-
T Consensus 131 D~anPCKHi~AvyY~lae~f~~dPflif~lR 161 (266)
T COG4279 131 DYANPCKHIAAVYYLLAEKFDEDPFLIFKLR 161 (266)
T ss_pred CcccchHHHHHHHHHHHHHhccCCeeeeeec
Confidence 4557999999999999999865 34444443
No 311
>PRK11752 putative S-transferase; Provisional
Probab=33.30 E-value=1.5e+02 Score=22.80 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred EEEecCCCHHHHHHHHHHHHH-HHHhcC-ceEEEEEeCCC----chhHHhhcCcCCCcEEE
Q 032338 28 IRFGHDWDDTCMQMDEVLSSV-AETIKN-FAVIYLVDISE----VPDFNTMYELYDPSTVM 82 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~l-a~~~~~-~v~~~~vd~d~----~~~l~~~~~I~~~Pt~~ 82 (142)
+.+|..+++.|++..-.++++ +...++ .+.+..||... .+++.+..-...+|+++
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv 105 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALL 105 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEE
Confidence 345556799999998888875 333322 45667777643 34666655567899974
No 312
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=33.25 E-value=1.5e+02 Score=22.11 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC
Q 032338 13 AVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~ 54 (142)
.+-+.+.+..-+||.|.||-|.=..-.++...|+.+.....+
T Consensus 133 trikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 133 TRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred HHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 345667777788999999999888888788888888776554
No 313
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=32.45 E-value=1.6e+02 Score=19.85 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=38.1
Q ss_pred ccCcccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 032338 3 YLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 3 ~~l~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 63 (142)
|.+..++. +.++- .+-+|++++|.=-|+-|+.-. --..|+++.++|++ .+.++..=+
T Consensus 4 f~~~~~~G-~~v~l--~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPc 61 (108)
T PF00255_consen 4 FSAKDIDG-KPVSL--SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPC 61 (108)
T ss_dssp SEEEBTTS-SEEEG--GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEB
T ss_pred eeeeCCCC-CEECH--HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeeh
Confidence 44445442 33332 335689999999999999888 55688999999874 455554443
No 314
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=42 Score=25.02 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=18.1
Q ss_pred cCCCeEEEEEe-cCCCHHHHH----HHHHHHHHHHH
Q 032338 21 EEERVVIIRFG-HDWDDTCMQ----MDEVLSSVAET 51 (142)
Q Consensus 21 ~~~k~vvv~F~-a~WC~~C~~----~~p~l~~la~~ 51 (142)
..+++||+.|| +...|-|-+ ++.-++++.+.
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka 123 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA 123 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhc
Confidence 34569999888 444455544 34555555543
No 315
>PRK10853 putative reductase; Provisional
Probab=32.11 E-value=66 Score=21.91 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=21.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC
Q 032338 28 IRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS 64 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 64 (142)
.-|+-+.|..|++....|++- .+.+-.+|.-
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~ 33 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYR 33 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHHc------CCCcEEeehc
Confidence 357899999999988888754 2444455543
No 316
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=29.69 E-value=1.3e+02 Score=17.85 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=32.2
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCC-chhHHhhcCc-CCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYEL-YDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~I-~~~Pt~~~f~~g~~~ 90 (142)
++.+.|+.|++..-.++...-. +....+|... .+++.+..-. ..+|++. .+|..+
T Consensus 4 y~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l 60 (74)
T cd03058 4 LGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLL--HNGKPI 60 (74)
T ss_pred EECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEE--ECCEEe
Confidence 5677899999988777765433 3334455432 2344443333 5899864 345443
No 317
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=29.16 E-value=57 Score=19.85 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=30.0
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC----CchhHHhhcCcCCCcEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTV 81 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~~~I~~~Pt~ 81 (142)
.+|...++.|++..-.+++..-. +....++.. ..+++.+..-...+|++
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l 55 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELGLP----YEIHPVDISKGEQKKPEFLKINPNGRIPAI 55 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcCCC----cEEEEecCcCCcccCHHHHHhCcCCCCCEE
Confidence 34544468898888777765433 444456542 23456655556789996
No 318
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=28.88 E-value=93 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=18.2
Q ss_pred CCCchhHHhhcCcCCCcEEEEE
Q 032338 63 ISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 63 ~d~~~~l~~~~~I~~~Pt~~~f 84 (142)
+.-+|.+=++|+|..+|+|++.
T Consensus 148 v~IDP~lF~~F~I~~VPafVv~ 169 (212)
T PRK13730 148 VQIDPTLFSQYGIRSVPALVVF 169 (212)
T ss_pred eeECHHHHHhcCCccccEEEEE
Confidence 3347888889999999999885
No 319
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=28.79 E-value=1.1e+02 Score=17.76 Aligned_cols=54 Identities=7% Similarity=-0.051 Sum_probs=29.5
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCC----CchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 31 GHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 31 ~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d----~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
+.+.|+.|.+..-.++...- .+....+|.. ..+++.+......+|++. .+|..+
T Consensus 5 ~~~~~~~~~~~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 62 (73)
T cd03042 5 SYFRSSASYRVRIALNLKGL----DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV--IDGLVL 62 (73)
T ss_pred cCCCCcchHHHHHHHHHcCC----CCeEEEecCccCCcCChHHHHhCCCCCCCEEE--ECCEEE
Confidence 34556667666555554322 3455566653 234566555667899863 345433
No 320
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=28.62 E-value=67 Score=22.22 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=17.3
Q ss_pred EEEecCCCHHHHHHHHHHHHH
Q 032338 28 IRFGHDWDDTCMQMDEVLSSV 48 (142)
Q Consensus 28 v~F~a~WC~~C~~~~p~l~~l 48 (142)
..|+-+.|..||+....|++-
T Consensus 4 ~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 4 IFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEeCCCCHHHHHHHHHHHHC
Confidence 347789999999998888755
No 321
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=28.54 E-value=2.2e+02 Score=20.24 Aligned_cols=65 Identities=6% Similarity=-0.069 Sum_probs=44.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCC--cEEEEEECCeEE
Q 032338 24 RVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDP--STVMFFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~--Pt~~~f~~g~~~ 90 (142)
++-.|.+|-.-|+.|-.....+.+.= -.+.+.|..+..+....+....++..- =++++.++|+..
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 44455579999999999666665442 234688888888888888888887543 455555556654
No 322
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=28.35 E-value=19 Score=25.82 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHH
Q 032338 34 WDDTCMQMDEVLS 46 (142)
Q Consensus 34 WC~~C~~~~p~l~ 46 (142)
-||+|+++.|.|-
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999998774
No 323
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=28.21 E-value=19 Score=25.84 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHH
Q 032338 34 WDDTCMQMDEVLS 46 (142)
Q Consensus 34 WC~~C~~~~p~l~ 46 (142)
-|++|+++.|.|-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999998774
No 324
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.98 E-value=68 Score=24.27 Aligned_cols=41 Identities=0% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEEE
Q 032338 45 LSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 45 l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~~ 91 (142)
+.++.++++..+- .|....+.+.|+|..+|++ +..+|+.+.
T Consensus 158 ~~~l~~~l~~~vY-----fdQ~g~Lt~rF~I~~VPav-V~q~g~~l~ 198 (202)
T TIGR02743 158 VNELEKRLDSRIY-----FDQHGKLTQKFGIKHVPAR-VSQEGLRLR 198 (202)
T ss_pred HHHHHHHhCCceE-----EcCCchHhhccCceeeceE-EEecCCEEE
Confidence 3455666543222 1566789999999999996 457787664
No 325
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.96 E-value=1.5e+02 Score=21.00 Aligned_cols=30 Identities=10% Similarity=-0.132 Sum_probs=23.4
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHhcCceEE
Q 032338 29 RFGHDWDDTCMQMDEVLSSVAETIKNFAVI 58 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~la~~~~~~v~~ 58 (142)
.|+..-||.|-...+.++++.++++-.+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 366778999999999999999887533443
No 326
>PRK10026 arsenate reductase; Provisional
Probab=26.99 E-value=96 Score=22.02 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=17.0
Q ss_pred EEecCCCHHHHHHHHHHHHH
Q 032338 29 RFGHDWDDTCMQMDEVLSSV 48 (142)
Q Consensus 29 ~F~a~WC~~C~~~~p~l~~l 48 (142)
-|+.+.|..||+....|++.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHC
Confidence 47899999999998888754
No 327
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=26.09 E-value=1.7e+02 Score=21.81 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=18.1
Q ss_pred cEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 79 STVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 79 Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
+++++|..|+.+ .+|+ ++.+++...++.+..
T Consensus 54 ~a~LIF~SGK~V-----------cTGa-Ks~ed~~~av~~~~~ 84 (185)
T COG2101 54 TAALIFRSGKVV-----------CTGA-KSVEDVHRAVKKLAK 84 (185)
T ss_pred ceEEEEecCcEE-----------Eecc-CcHHHHHHHHHHHHH
Confidence 466778888876 2333 345666666655433
No 328
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=25.66 E-value=53 Score=25.22 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=43.3
Q ss_pred cccCChHHHHHHHHhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCchhHHhhcCc
Q 032338 6 PHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL 75 (142)
Q Consensus 6 ~~l~~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~I 75 (142)
..|.....+.++.. .++|++ -+++.++.++.+....+++.++.. ......++.++..++..+|+|
T Consensus 206 ~~Ip~~~~v~~A~~--~g~pv~--~~~p~s~~a~~~~~la~ell~~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 206 HFVPRSNIVQKAEI--RKMTVI--EYDPESEQANEYRELAKKIYENTE-FVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred EECCCChHHHHHHH--cCCceE--EeCCCCHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHH
Confidence 34555666767653 467765 367889999888888888776532 344556666666777777775
No 329
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=25.49 E-value=1.1e+02 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=31.4
Q ss_pred cCCCeEEEEEecCCCHH-H----HHHHHHHHHHHHHhcC--ceEEEEEeCC
Q 032338 21 EEERVVIIRFGHDWDDT-C----MQMDEVLSSVAETIKN--FAVIYLVDIS 64 (142)
Q Consensus 21 ~~~k~vvv~F~a~WC~~-C----~~~~p~l~~la~~~~~--~v~~~~vd~d 64 (142)
-.++.++++|.=+.||. | .+|...++++.++..- .-.|+.||-+
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 34789999999999975 5 5666777777665332 2368888864
No 330
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=25.46 E-value=3.7e+02 Score=21.80 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEEeCCC------chhHHhhcCc-----CCCcEEEEEECCeEEEEecCCCcccccc
Q 032338 35 DDTCMQMDEVLSSVAETIKNFAVIYLVDISE------VPDFNTMYEL-----YDPSTVMFFFRNKHIMIDLGTGNNNKIN 103 (142)
Q Consensus 35 C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~------~~~l~~~~~I-----~~~Pt~~~f~~g~~~~~~~g~~~~~~~~ 103 (142)
=++..-.+.++++++..|.....++.|+-+. +.++++++|+ ...|-++++..++.-.+ +...- .--
T Consensus 161 G~hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k~wl~-liEaV--tS~ 237 (306)
T PF06616_consen 161 GPHNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEKNWLF-LIEAV--TSH 237 (306)
T ss_dssp STTHHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTTTEEE-EEEE----TT
T ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCCCcEE-EEEEE--cCc
Confidence 4678888999999999997655555555333 3567888888 56999999986652111 00000 012
Q ss_pred ccccchhHHHHHHHHHHHhhhcCCceeecc
Q 032338 104 WALKDKQEFIDIVETVYRGARKGRGLVIAP 133 (142)
Q Consensus 104 ~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~ 133 (142)
|.+..+ =..-|++++.++..|..-||+=
T Consensus 238 GPv~~k--R~~eL~~l~~~~~~g~vfVTAF 265 (306)
T PF06616_consen 238 GPVDPK--RKRELEELFEGSKAGLVFVTAF 265 (306)
T ss_dssp ----HH--HHHHHHHHT-BTTCEEEEEEEE
T ss_pred CCCCHH--HHHHHHHHHhcCCCCeEEEEeC
Confidence 333322 2455677788887777777763
No 331
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=25.26 E-value=3.2e+02 Score=20.97 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc-hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 33 DWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 33 ~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
.-|+.|++..-.+... +-.+.+..+|.... +++.+..-...+|++. .+|..+
T Consensus 17 ~~cp~~~rv~i~L~ek----gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~--~~g~~l 69 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT--YNTEVK 69 (236)
T ss_pred CCCHhHHHHHHHHHHc----CCCcEEEEECCCCCCHHHHHHCcCCCCCEEE--ECCEEe
Confidence 4599999988777752 12466777887654 5677666667899963 355543
No 332
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.86 E-value=1.7e+02 Score=19.65 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhhhcCCc
Q 032338 109 KQEFIDIVETVYRGARKGRG 128 (142)
Q Consensus 109 ~~~l~~~l~~~~~~~~~g~~ 128 (142)
..++.++|++.+...++|.+
T Consensus 86 ak~M~eFink~F~qif~gg~ 105 (107)
T COG4707 86 AKEMMEFINKEFYQIFLGGS 105 (107)
T ss_pred HHHHHHHHHHHHHHHHcccC
Confidence 47899999999999888764
No 333
>PRK06246 fumarate hydratase; Provisional
Probab=23.96 E-value=73 Score=25.41 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=37.2
Q ss_pred CchhHHhhcCc-----CCCcEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccC
Q 032338 65 EVPDFNTMYEL-----YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPK 134 (142)
Q Consensus 65 ~~~~l~~~~~I-----~~~Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~ 134 (142)
+|.++|++.+. .++|++.+ +-|+.+. +.+. .-++.+.+-+.+.++.....+.+|.+|+
T Consensus 53 eN~~iA~~~~~P~CQDTG~~~~fv-~iG~~v~----------~~~~-~l~~ai~egv~~a~~~~pLR~s~V~~pl 115 (280)
T PRK06246 53 ENAEIAKEEQVPLCQDTGMAVVFV-EIGQDVH----------IEGG-DLEDAINEGVRKGYEEGYLRKSVVADPL 115 (280)
T ss_pred HHHHHHhcCCCccccCCCcEEEEE-EeCCCcc----------cCCc-cHHHHHHHHHHHHhccCCCchhccCCcc
Confidence 45566666655 67888644 3355542 2221 1135566667778888888999998998
No 334
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=23.61 E-value=4.2e+02 Score=21.84 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=44.4
Q ss_pred HhcCCCeEEEEEecCCCHHHHHHHHHHHHHHHHhc--CceEEEEEeCCCchhHHhhcCcCCCcEEEEEE
Q 032338 19 LTEEERVVIIRFGHDWDDTCMQMDEVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 19 ~~~~~k~vvv~F~a~WC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~ 85 (142)
.+....+++||=....+ .+-+.++++-.. ..+.|+..|+.+.+.|.+-|....+=.++.|-
T Consensus 23 ~~~gy~v~~vDNl~n~~------~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa 85 (343)
T KOG1371|consen 23 LKRGYGVVIVDNLNNSY------LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFA 85 (343)
T ss_pred HhCCCcEEEEecccccc------hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeeh
Confidence 34556788887665554 555555555544 57999999999999999999988866666663
No 335
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=23.29 E-value=3.6e+02 Score=22.34 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=35.0
Q ss_pred eEEEEEecCCCHHHHH----HHHHHHHHHHHhcC---ceEEEEEeCCCc-h--hHHhhcCcCC--CcEEEEEECCeEEE
Q 032338 25 VVIIRFGHDWDDTCMQ----MDEVLSSVAETIKN---FAVIYLVDISEV-P--DFNTMYELYD--PSTVMFFFRNKHIM 91 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~----~~p~l~~la~~~~~---~v~~~~vd~d~~-~--~l~~~~~I~~--~Pt~~~f~~g~~~~ 91 (142)
..-++|-| ||.|-+ +...+.++.+++.+ ...+..+-+--| | .--..+||.+ -|.-.+|.+|+.+.
T Consensus 256 ~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~ 332 (361)
T COG0821 256 SRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK 332 (361)
T ss_pred ccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE
Confidence 33444444 999943 33344445554432 344444443322 1 1223566644 58999999999873
No 336
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.55 E-value=1.5e+02 Score=23.26 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=22.4
Q ss_pred eEEEEEeCCCchhHHhhcCcCCCcE
Q 032338 56 AVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 56 v~~~~vd~d~~~~l~~~~~I~~~Pt 80 (142)
..+..||+|.|..|..++||...|+
T Consensus 30 ~~VLvVDaDpd~nL~~~LGve~~~~ 54 (255)
T COG3640 30 YNVLVVDADPDSNLPEALGVEEPMK 54 (255)
T ss_pred ceEEEEeCCCCCChHHhcCCCCCCc
Confidence 7889999999999999999988755
No 337
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=22.18 E-value=1.6e+02 Score=25.21 Aligned_cols=25 Identities=8% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCcEEEEEECCeEEEEecCCCcccc
Q 032338 77 DPSTVMFFFRNKHIMIDLGTGNNNK 101 (142)
Q Consensus 77 ~~Pt~~~f~~g~~~~~~~g~~~~~~ 101 (142)
-+|+++|++++..+.+.+|.+....
T Consensus 63 iy~vyl~~~d~~~~~l~~~~~~t~~ 87 (459)
T PRK11331 63 IYPVILYYKDFDELVLAYGISDTNE 87 (459)
T ss_pred eeEEEEEeccCCEEEEEEecCCCcc
Confidence 3899999999999999998887653
No 338
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.88 E-value=1.2e+02 Score=24.17 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=29.3
Q ss_pred eEEEEEecCCCHHHHHHHHHHHH---HHHHhcC-ceEEEEEeCCCc----hhHHhhcCc----CCCcEEEEEECCeEE
Q 032338 25 VVIIRFGHDWDDTCMQMDEVLSS---VAETIKN-FAVIYLVDISEV----PDFNTMYEL----YDPSTVMFFFRNKHI 90 (142)
Q Consensus 25 ~vvv~F~a~WC~~C~~~~p~l~~---la~~~~~-~v~~~~vd~d~~----~~l~~~~~I----~~~Pt~~~f~~g~~~ 90 (142)
-||| |.+. ++-+++.+++ +..-+.. .|.+-.=|+.=+ .+|...++- ..+| .+|.+|+.+
T Consensus 132 ~VVv--Y~Ts---LRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LP--rVFV~GryI 202 (281)
T KOG2824|consen 132 RVVV--YTTS---LRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLP--RVFVKGRYI 202 (281)
T ss_pred eEEE--EEcc---cchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccC--eEEEccEEe
Confidence 4554 4444 4555555553 2222222 355544444432 344444443 5688 467789888
No 339
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=21.81 E-value=79 Score=18.67 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=30.7
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCCCc--hhHHhhcCcCCCcEEEEEECCeEE
Q 032338 30 FGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 30 F~a~WC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
++.+.|+.|+...-.+++..-. +....+|..+. .++.....-..+|++. .+|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~----~e~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l 60 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE----YEDVRITYEEWPELDLKPTLPFGQLPVLE--IDGKKL 60 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC----cEEEEeCHHHhhhhhhccCCcCCCCCEEE--ECCEEE
Confidence 3456788999877777655433 33344554322 2234444456799963 345443
No 340
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.47 E-value=1.8e+02 Score=21.31 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=11.2
Q ss_pred ccccccchhHHHHHHHHHHH
Q 032338 102 INWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 102 ~~~~~~~~~~l~~~l~~~~~ 121 (142)
++|+ ++.+++...++.++.
T Consensus 151 itGa-ks~~~~~~a~~~i~~ 169 (174)
T cd04518 151 ITGA-KSEEDAKRAVEKLLS 169 (174)
T ss_pred EEec-CCHHHHHHHHHHHHH
Confidence 3444 456777777766644
No 341
>PRK00394 transcription factor; Reviewed
Probab=20.92 E-value=1.9e+02 Score=21.28 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=17.6
Q ss_pred cEEEEEECCeEEEEecCCCccccccccccchhHHHHHHHHHHH
Q 032338 79 STVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 79 Pt~~~f~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 121 (142)
.|+++|..|+.+ ++|+ ++.+++...++.++.
T Consensus 140 ~~~lIF~SGKvv-----------itGa-ks~~~~~~a~~~i~~ 170 (179)
T PRK00394 140 VVVLLFGSGKLV-----------ITGA-KSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEEcCCEEE-----------EEec-CCHHHHHHHHHHHHH
Confidence 345556666654 3444 456667776666644
No 342
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=20.72 E-value=3e+02 Score=19.02 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHHH----HHHHHHHhcC---ceEEEEEeCCCchhHHhhcCcCCCcEEEEEECCeEE
Q 032338 32 HDWDDTCMQMDEV----LSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 32 a~WC~~C~~~~p~----l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f~~g~~~ 90 (142)
...|..|..-... +.+++..+.. .+.+-++.++.. +++.++ ..-|++ -.||+.+
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I--~inG~pi 72 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTI--RINGRPI 72 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCee--eECCEeh
Confidence 3489999664444 4445554543 466777777764 677777 677884 4477766
No 343
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=3.8e+02 Score=20.18 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=57.3
Q ss_pred cCCCeEEEEEe-cCCCHHHHHHHHHHHHHHHHhcC-c--eEEEEEeC--------------------------CCchhHH
Q 032338 21 EEERVVIIRFG-HDWDDTCMQMDEVLSSVAETIKN-F--AVIYLVDI--------------------------SEVPDFN 70 (142)
Q Consensus 21 ~~~k~vvv~F~-a~WC~~C~~~~p~l~~la~~~~~-~--v~~~~vd~--------------------------d~~~~l~ 70 (142)
..++.|++-|| .++---|=...-.+.+.++++.. + +..+.+|. |.+.+++
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 45788999888 67777775555556666666544 3 44444442 2356778
Q ss_pred hhcCc----CCCcE---EEEEECCe--EEEE-ecCCCccccccccccchhHHHHHHHHHHHhhhcCCceeeccCCc
Q 032338 71 TMYEL----YDPST---VMFFFRNK--HIMI-DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 71 ~~~~I----~~~Pt---~~~f~~g~--~~~~-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~~ 136 (142)
+.||| .+++- +++-.+|- ++.+ |.. .-++.++.+..++.....-..|- +|-+=|.|
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlp---------vgRSVdE~lRLvqAfQ~td~~ge-VcPagW~p 176 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLP---------VGRSVDETLRLVQAFQFTDEHGE-VCPAGWKP 176 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccC---------CCccHHHHHHHHHHHhhhhccCc-cccCCCCC
Confidence 88887 33332 11222332 2211 111 12355777777777555555554 56666654
No 344
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.50 E-value=1.1e+02 Score=23.34 Aligned_cols=41 Identities=0% Similarity=0.015 Sum_probs=27.3
Q ss_pred HHHHHHhcCceEEEEEeCCCchhHHhhcCcCCCcEEEEE--ECCeEEEE
Q 032338 46 SSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF--FRNKHIMI 92 (142)
Q Consensus 46 ~~la~~~~~~v~~~~vd~d~~~~l~~~~~I~~~Pt~~~f--~~g~~~~~ 92 (142)
.++.++++..+- .|....|.+.|+|..+|++ +. .+|+.+.+
T Consensus 157 ~~~~~~l~~~vY-----fdQ~G~Lt~rF~I~~VPAv-V~~~q~G~~l~I 199 (209)
T PRK13738 157 PEMSKALDSRIY-----FDQNGVLCQRFGIDQVPAR-VSAVPGGRFLKV 199 (209)
T ss_pred HHHHHHhCCceE-----EcCcchHHHhcCCeeeceE-EEEcCCCCEEEE
Confidence 445555543222 1556679999999999996 45 67877644
No 345
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.04 E-value=2.3e+02 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=30.3
Q ss_pred ChHHHHHHHHhcCCCeEEEEEecCCCHHHH--------HHHHHHHHHHHHhcCceE-EEEEeCCC
Q 032338 10 SGWAVDQAILTEEERVVIIRFGHDWDDTCM--------QMDEVLSSVAETIKNFAV-IYLVDISE 65 (142)
Q Consensus 10 ~~~~~~~~i~~~~~k~vvv~F~a~WC~~C~--------~~~p~l~~la~~~~~~v~-~~~vd~d~ 65 (142)
+.+++..++....++++|| ++||- ..+..+.++.+++.+.+. +.++-.++
T Consensus 38 ~R~~I~~Il~g~d~rllvI------vGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eK 96 (348)
T PRK12756 38 SRRRIEKILNGEDPRLLVI------IGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEK 96 (348)
T ss_pred HHHHHHHHhcCCCCceEEE------ecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEecccc
Confidence 3556777776666777777 77882 234455666667665433 55665554
Done!