BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032339
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase
          Length = 117

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66

Query: 99  AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 67  VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 102


>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUK|E Chain E, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUO|A Chain A, Crystal Srtucture Of The Nem Modified
           Ferredoxin:thioredoxin Reductase
          Length = 109

 Score =  158 bits (400), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60

Query: 99  AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 61  VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 96


>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin F
 pdb|2PVO|A Chain A, Crystal Srtucture Of The Ternary Complex Between
           Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
           Reductase
          Length = 110

 Score =  158 bits (400), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 81/94 (86%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2   KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
             FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 62  NTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 95


>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin
           And Ferredoxin:thioredoxin Reductase
          Length = 108

 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)

Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE + 
Sbjct: 3   TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62

Query: 102 GFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 63  TFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 95


>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin
           Reductase
          Length = 107

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 77/89 (86%)

Query: 46  MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
           M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE +  FWN
Sbjct: 4   MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63

Query: 106 CPCVPMRERKECHCMLFLTPENDFAGQDQ 134
           CPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 64  CPCVPMRERKECHCMLFLTPDNDFAGDAQ 92


>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
           Pspc1NONO
          Length = 261

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 8   CGSGVSTFICTPRPIIARPRPV--------TQIRAQVEPSEKSVEIMRKFSE------QY 53
           CG G      TPRP+I  P            ++  + +   K  E   +F++      +Y
Sbjct: 157 CGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEY 216

Query: 54  ARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
           A R      ++K     V + + + K+ L A +   RH
Sbjct: 217 ASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,879,647
Number of Sequences: 62578
Number of extensions: 133191
Number of successful extensions: 351
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)