BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032339
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
Length = 146
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 110/140 (78%), Gaps = 6/140 (4%)
Query: 1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
M LQ+ C G S TPR R IRA+ EPSEKSVEIMRKFSEQYARRS
Sbjct: 1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56
Query: 59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE QGFWNCPCVPMRERKECH
Sbjct: 57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116
Query: 119 CMLFLTPENDFAGQDQVMLS 138
CMLFLTP+NDFAG+DQ + S
Sbjct: 117 CMLFLTPDNDFAGKDQTITS 136
>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Glycine max GN=FTRC PE=2 SV=1
Length = 144
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 110/136 (80%), Gaps = 4/136 (2%)
Query: 1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
MT Q+S V + + TP R R +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56
Query: 61 FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCM 120
FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRERKECHCM
Sbjct: 57 FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116
Query: 121 LFLTPENDFAGQDQVM 136
LFLTP+NDFAG +Q +
Sbjct: 117 LFLTPDNDFAGNEQTI 132
>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea PE=2 SV=1
Length = 148
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/110 (84%), Positives = 102/110 (92%)
Query: 27 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
RP I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86
Query: 87 CPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
CPCR+YDDKAAEA QGFWNCPCVPMRERKECHCMLFLTPENDFAG+DQ +
Sbjct: 87 CPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTI 136
>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea GN=FTRC PE=1 SV=2
Length = 144
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 106/114 (92%), Gaps = 1/114 (0%)
Query: 24 ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
A PR ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78
Query: 83 GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
GAPLCPCRHYDDK AEA+QGFWNCPCVPMRERKECHCMLFLTP+NDFAG++Q +
Sbjct: 79 GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTI 132
>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Zea mays GN=FTRC PE=2 SV=1
Length = 152
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 102/117 (87%), Gaps = 5/117 (4%)
Query: 24 ARPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
RPR +RAQ ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25 GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83
Query: 80 DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
D+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRERKECHCMLFLTP+NDFAG+DQV+
Sbjct: 84 DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVI 140
>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2
SV=1
Length = 146
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/96 (88%), Positives = 91/96 (94%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE
Sbjct: 39 KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98
Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
QGFWNCPCVPMRERKECHCMLFLTP+NDFAGQDQ +
Sbjct: 99 QGFWNCPCVPMRERKECHCMLFLTPDNDFAGQDQAI 134
>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
yezoensis GN=ftrB PE=3 SV=2
Length = 116
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 81/99 (81%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
+++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70
Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLST 139
+WNCPCVPMRER+ECHCMLFLTP+N+FA Q + T
Sbjct: 71 ATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEIDKT 109
>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
purpurea GN=ftrB PE=3 SV=1
Length = 118
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 78/98 (79%)
Query: 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71
Query: 102 GFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLST 139
+WNCPCVPMRERKECHCMLFLTP+N+F Q + T
Sbjct: 72 TYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKT 109
>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia
theta GN=ftrB PE=3 SV=1
Length = 102
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 78/101 (77%)
Query: 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
+E S M+KF+E YA+R++TFFC D S+T +V++GLA HKD GAPLCPCRHYDDK
Sbjct: 2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61
Query: 96 AAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
+ E +WNCPCVPMRERKECHCMLFLT +N+FAG Q +
Sbjct: 62 SEEVASTYWNCPCVPMRERKECHCMLFLTKDNEFAGSSQTL 102
>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium
caldarium GN=ftrB PE=3 SV=1
Length = 111
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 79/96 (82%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD GAPLCPCRHY++K E
Sbjct: 6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65
Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
+WNCPCVPMRERKECHCMLFL P N+F+G+ Q++
Sbjct: 66 AAYWNCPCVPMRERKECHCMLFLQPSNEFSGESQLI 101
>sp|P46224|CH60_PYRSA 60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL
PE=3 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 46 MRKFSEQYARRSD-TFFCVDKSVTSVVIKGLADHKDSLGA 84
MR+FSE Y ++ TFFC + S+T+VVI+GL HK+ GA
Sbjct: 1 MRRFSETYGQKKQITFFCSNLSITAVVIEGLLKHKEEYGA 40
>sp|Q608Y9|NUON_METCA NADH-quinone oxidoreductase subunit N OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=nuoN PE=3
SV=1
Length = 493
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 18 TPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCV 63
TP P PVT A V + ++R F+ +A RS+TF CV
Sbjct: 224 TPDVYQGAPTPVTAFLATVSKASVFALLLRFFTAAHAERSETFLCV 269
>sp|Q72DH6|SYY_DESVH Tyrosine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=tyrS PE=3
SV=1
Length = 398
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 79 KDSLGAPLCPCRHYDDKAAEAQQGF 103
K+SL L H +DKAAEAQQGF
Sbjct: 289 KESLAYELTTRYHGEDKAAEAQQGF 313
>sp|P47715|RPOB_MYCGA DNA-directed RNA polymerase subunit beta OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=rpoB PE=3 SV=2
Length = 1390
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 49 FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLG 83
F ++ A + DT F ++KS T +IK L +H S+G
Sbjct: 1120 FDKKLADQLDTVFGLEKSKTQSLIKNLVEHMKSIG 1154
>sp|Q88BK3|DNAA_PSESM Chromosomal replication initiator protein DnaA OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=dnaA PE=3 SV=1
Length = 511
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 16 ICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYA 54
+ P P++A P PV + EPS S + M S Q A
Sbjct: 117 MAVPAPMVAAPVPVHNVATHDEPSRDSFDPMAGASSQQA 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,994,716
Number of Sequences: 539616
Number of extensions: 1792231
Number of successful extensions: 5391
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5376
Number of HSP's gapped (non-prelim): 16
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)