Query 032339
Match_columns 142
No_of_seqs 109 out of 190
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 20:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 100.0 6.2E-49 2.1E-53 295.3 5.1 105 35-139 3-107 (117)
2 1u2m_A Histone-like protein HL 55.3 12 0.0004 26.7 3.6 37 39-75 95-142 (143)
3 2kvo_A Photosystem II reaction 49.5 9.6 0.00033 28.4 2.4 27 38-64 85-111 (120)
4 1n0z_A ZNF265; zinc finger, RN 44.9 7.9 0.00027 23.8 1.1 18 101-118 12-34 (45)
5 3vu7_H DNA repair protein REV1 44.0 47 0.0016 24.3 5.4 41 35-81 52-92 (124)
6 1cyi_A Cytochrome C6, cytochro 38.2 27 0.00092 21.7 3.0 25 37-61 66-90 (90)
7 2k9i_A Plasmid PRN1, complete 36.6 28 0.00095 20.4 2.7 32 44-77 18-49 (55)
8 3jvd_A Transcriptional regulat 36.1 22 0.00075 27.5 2.7 45 45-89 36-100 (333)
9 3dbi_A Sugar-binding transcrip 34.7 25 0.00086 26.9 2.8 46 45-90 33-100 (338)
10 2k1p_A Zinc finger RAN-binding 33.8 15 0.00052 21.0 1.1 17 101-117 4-23 (33)
11 3e3m_A Transcriptional regulat 33.5 24 0.00083 27.4 2.6 42 45-86 42-103 (355)
12 3ctp_A Periplasmic binding pro 31.8 29 0.00098 26.6 2.7 23 65-87 72-94 (330)
13 2cly_C ATP synthase coupling f 30.9 78 0.0027 21.8 4.5 44 41-85 11-54 (77)
14 2o20_A Catabolite control prot 30.0 32 0.0011 26.4 2.6 22 65-86 75-96 (332)
15 3bil_A Probable LACI-family tr 29.5 33 0.0011 26.7 2.7 23 65-87 78-100 (348)
16 1qpz_A PURA, protein (purine n 28.6 61 0.0021 24.8 4.1 22 65-86 70-91 (340)
17 3cyv_A URO-D, UPD, uroporphyri 28.6 64 0.0022 25.8 4.4 35 43-77 305-347 (354)
18 3kjx_A Transcriptional regulat 28.5 53 0.0018 25.3 3.7 46 37-86 36-101 (344)
19 2cpg_A REPA protein, transcrip 28.1 54 0.0019 18.4 2.9 28 44-74 11-38 (45)
20 3h5o_A Transcriptional regulat 26.4 31 0.0011 26.5 2.0 45 45-89 34-98 (339)
21 2pyq_A Uncharacterized protein 25.7 98 0.0034 22.7 4.5 31 44-76 7-37 (114)
22 1jye_A Lactose operon represso 25.6 42 0.0014 26.0 2.7 41 46-86 34-94 (349)
23 1th8_A Anti-sigma F factor; SP 25.6 91 0.0031 20.8 4.1 46 39-85 12-57 (145)
24 2qv5_A AGR_C_5032P, uncharacte 21.1 2.1E+02 0.0073 22.9 6.1 46 34-79 187-235 (261)
25 1jx6_A LUXP protein; protein-l 21.1 86 0.0029 23.8 3.6 43 44-86 16-77 (342)
26 1r3s_A URO-D, uroporphyrinogen 20.9 1.5E+02 0.0053 23.9 5.3 36 41-77 316-359 (367)
27 2hsg_A Glucose-resistance amyl 20.7 1.1E+02 0.0037 23.3 4.1 45 38-86 29-93 (332)
28 4a1q_A ORF E73; viral protein, 20.4 1.6E+02 0.0056 19.7 4.4 28 59-86 29-58 (73)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=100.00 E-value=6.2e-49 Score=295.33 Aligned_cols=105 Identities=64% Similarity=1.236 Sum_probs=96.8
Q ss_pred cCCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcccccC
Q 032339 35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114 (142)
Q Consensus 35 ~~~~s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y~~e~ 114 (142)
.++++++++++|++|+++||+++||+||||++||+.|++||++||++||++|||||++.|+++|++.++|||||+||+++
T Consensus 3 ~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re~ 82 (117)
T 1dj7_A 3 SDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRER 82 (117)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhhc
Confidence 56789999999999999999999999999999999999999999999999999999997677766667799999999999
Q ss_pred ceeeeeeeeCCccccCCCceeeccc
Q 032339 115 KECHCMLFLTPENDFAGQDQVMLST 139 (142)
Q Consensus 115 G~ChCgLFvs~e~~~~G~~~~~~~~ 139 (142)
|+|||||||++||+|+|+.|+|+++
T Consensus 83 G~ChC~Lfvt~e~~~~g~~~~i~~~ 107 (117)
T 1dj7_A 83 KECHCMLFLTPDNDFAGDAQDIPME 107 (117)
T ss_dssp CCCTTSSSBCTTSTTBCSCSCCCHH
T ss_pred CceeEeeeecccccccCccccccHH
Confidence 9999999999999999999999986
No 2
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=55.34 E-value=12 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHhhhcCcE----------eccCh-hhHHHHHHHH
Q 032339 39 SEKSVEIMRKFSEQYARRSDTF----------FCVDK-SVTSVVIKGL 75 (142)
Q Consensus 39 s~~~~e~~~~~~ekyaek~Gy~----------lNPD~-ev~~~Vi~GL 75 (142)
.....+++.+.++.+|+..||- .+|.- ++|+.|++.|
T Consensus 95 ~~~i~~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 95 RGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 3556677889999999999984 35676 8898888765
No 3
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=49.54 E-value=9.6 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHHHhhhcCcEeccC
Q 032339 38 PSEKSVEIMRKFSEQYARRSDTFFCVD 64 (142)
Q Consensus 38 ~s~~~~e~~~~~~ekyaek~Gy~lNPD 64 (142)
.+++..+.+.+|+++||+.+|.-|...
T Consensus 85 ~s~~~WdRFMRFMeRYA~~Ngl~f~k~ 111 (120)
T 2kvo_A 85 NSQPEWDRFMRFMERYGAENGLGFSKS 111 (120)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCSSSCST
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccC
Confidence 489999999999999999999877654
No 4
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=44.89 E-value=7.9 Score=23.77 Aligned_cols=18 Identities=39% Similarity=1.093 Sum_probs=13.1
Q ss_pred CCceeec---Cccc--ccCceee
Q 032339 101 QGFWNCP---CVPM--RERKECH 118 (142)
Q Consensus 101 d~diICP---C~y~--~e~G~Ch 118 (142)
..||+|| |-.+ ..+..|+
T Consensus 12 ~GDW~C~~~~C~~~Nfa~R~~C~ 34 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFARRTSCD 34 (45)
T ss_dssp SSSCBCSSTTTCCBCCSSCSBCS
T ss_pred CCCcCCCCCCCCCEEcccccccc
Confidence 6799999 9874 4566664
No 5
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=44.02 E-value=47 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.6
Q ss_pred cCCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhh
Q 032339 35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDS 81 (142)
Q Consensus 35 ~~~~s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~r 81 (142)
...|.+++++.+.+++.+.++. -|-+-+..|++-|-+.-++
T Consensus 52 ~~~P~~~DV~~l~~yL~~lVee------k~Lek~~~vlk~l~rlv~~ 92 (124)
T 3vu7_H 52 ISDPMEEDILQVVKYCTDLIEE------KDLEKLDLVIKYMKRLMQQ 92 (124)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHhc
Confidence 3457777788887777777753 4566777777777665443
No 6
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=38.17 E-value=27 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcEe
Q 032339 37 EPSEKSVEIMRKFSEQYARRSDTFF 61 (142)
Q Consensus 37 ~~s~~~~e~~~~~~ekyaek~Gy~l 61 (142)
..++++++.+-.|+.......||.|
T Consensus 66 ~ls~~ei~~l~~yl~~~~~~~~W~~ 90 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHhcccccCCCC
Confidence 4799999999999999998888864
No 7
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=36.59 E-value=28 Score=20.42 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHH
Q 032339 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD 77 (142)
Q Consensus 44 e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~ 77 (142)
+++++.++.+|++.|. +..+=+-.+|.+-|.+
T Consensus 18 ~el~~~l~~~a~~~g~--s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNL--TLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 3455567888888886 4444444444444433
No 8
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=36.08 E-value=22 Score=27.54 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCCCCC
Q 032339 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (142)
Q Consensus 45 ~~~~~~ekyaek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~CPC 89 (142)
++++.+.+.|++.||.-|+ +..+...+++|+..--.++|+..=-+
T Consensus 36 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 100 (333)
T 3jvd_A 36 QTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVA 100 (333)
T ss_dssp ----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3444456667777776554 33577889999999999999865433
No 9
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=34.72 E-value=25 Score=26.95 Aligned_cols=46 Identities=13% Similarity=-0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhcCcEecc----------------------ChhhHHHHHHHHHHhHhhhCCCCCCCc
Q 032339 45 IMRKFSEQYARRSDTFFCV----------------------DKSVTSVVIKGLADHKDSLGAPLCPCR 90 (142)
Q Consensus 45 ~~~~~~ekyaek~Gy~lNP----------------------D~ev~~~Vi~GLa~NK~rYG~~~CPCR 90 (142)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=-+.
T Consensus 33 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 33 ETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp ---------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3444466667777776543 345778899999999999998654333
No 10
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=33.82 E-value=15 Score=20.95 Aligned_cols=17 Identities=35% Similarity=1.026 Sum_probs=10.5
Q ss_pred CCceeec-Cccc--ccCcee
Q 032339 101 QGFWNCP-CVPM--RERKEC 117 (142)
Q Consensus 101 d~diICP-C~y~--~e~G~C 117 (142)
..||+|| |-.+ ..+-.|
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C 23 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSEC 23 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBC
T ss_pred CCCcccCCCCCccccccccc
Confidence 4689999 7653 344444
No 11
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.50 E-value=24 Score=27.39 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 032339 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 45 ~~~~~~ekyaek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
++++.+.+.|++.||.-|+ +..+...+++|+..--.++|+..
T Consensus 42 ~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 103 (355)
T 3e3m_A 42 ETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQL 103 (355)
T ss_dssp -----------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE
Confidence 3445566677777787664 22466789999999999999875
No 12
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=31.78 E-value=29 Score=26.60 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHhhhCCCCC
Q 032339 65 KSVTSVVIKGLADHKDSLGAPLC 87 (142)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~C 87 (142)
..+...+++|+..--.++|+..=
T Consensus 72 ~~~~~~~~~gi~~~~~~~g~~~~ 94 (330)
T 3ctp_A 72 NPFFNQMASVIEEYAKNKGYTLF 94 (330)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHCCCEEE
Confidence 34677899999988888998653
No 13
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=30.94 E-value=78 Score=21.82 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 032339 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (142)
Q Consensus 41 ~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~ 85 (142)
-=++++|++-.+-+ ..|=...+.+++-..+-+-|.+-...||..
T Consensus 11 LFldKIREYk~Ks~-~~G~lVD~~Pe~~kel~~el~kL~~~YGgg 54 (77)
T 2cly_C 11 LFVDKIREYRTKRQ-TSGGPVDAGPEYQQDLDRELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHHHHHT-CCSSSSSCCTHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcc-cCCCCCCCCHHHHHHHHHHHHHHHHHHCcc
Confidence 34678888866655 348899999999999999999999999976
No 14
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.97 E-value=32 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHhhhCCCC
Q 032339 65 KSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
..+...++.|+..--.++|+..
T Consensus 75 ~~~~~~~~~gi~~~~~~~g~~~ 96 (332)
T 2o20_A 75 STYFAAITRGVDDIASMYKYNM 96 (332)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHHHHHHHHHcCCEE
Confidence 4477789999999888999865
No 15
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.54 E-value=33 Score=26.71 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHhhhCCCCC
Q 032339 65 KSVTSVVIKGLADHKDSLGAPLC 87 (142)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~C 87 (142)
..+...+++|+..--.++|+..=
T Consensus 78 ~~~~~~~~~gi~~~a~~~g~~~~ 100 (348)
T 3bil_A 78 NHYFAAMVTEIQSTASKAGLATI 100 (348)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHHHHHHHHcCCEEE
Confidence 34667899999988888998753
No 16
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.61 E-value=61 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHhHhhhCCCC
Q 032339 65 KSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 65 ~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
..+...+++|+..--.++|+..
T Consensus 70 ~~~~~~~~~gi~~~a~~~g~~~ 91 (340)
T 1qpz_A 70 AAYFAEIIEAVEKNCFQKGYTL 91 (340)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHHHHcCCEE
Confidence 4567789999999888899864
No 17
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=28.58 E-value=64 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhcCcEeccC--------hhhHHHHHHHHHH
Q 032339 43 VEIMRKFSEQYARRSDTFFCVD--------KSVTSVVIKGLAD 77 (142)
Q Consensus 43 ~e~~~~~~ekyaek~Gy~lNPD--------~ev~~~Vi~GLa~ 77 (142)
.+++++.++.++...||.||++ .+-+..+++..-.
T Consensus 305 ~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~env~a~v~~v~~ 347 (354)
T 3cyv_A 305 EEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHR 347 (354)
T ss_dssp HHHHHHHHTTTTTSSCEEBCBSSCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEecCCCCCCCCCHHHHHHHHHHHHH
Confidence 3445555555554468999998 4555555555443
No 18
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.50 E-value=53 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 032339 37 EPSEKSVEIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 37 ~~s~~~~e~~~~~~ekyaek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
..++++.++ +.+.+++.||.-|+ +..+...+++|+..--.++|+..
T Consensus 36 ~vs~~tr~r----V~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 101 (344)
T 3kjx_A 36 DVSDATRAR----VLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQP 101 (344)
T ss_dssp CCCHHHHHH----HHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEE
T ss_pred CCCHHHHHH----HHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 366666655 55566667787664 23467889999999999999875
No 19
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=28.09 E-value=54 Score=18.44 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHH
Q 032339 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKG 74 (142)
Q Consensus 44 e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~G 74 (142)
+.+.+.++++|++.|. + -.+++...++.
T Consensus 11 ~~l~~~Ld~~a~~~g~--s-rS~~ir~ai~~ 38 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL--S-KSAMISVALEN 38 (45)
T ss_dssp HHHHHHHHHHHHHHTC--C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc--C-HHHHHHHHHHH
Confidence 3456667888888885 3 34444444433
No 20
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.44 E-value=31 Score=26.53 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhcCcEecc--------------------ChhhHHHHHHHHHHhHhhhCCCCCCC
Q 032339 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (142)
Q Consensus 45 ~~~~~~ekyaek~Gy~lNP--------------------D~ev~~~Vi~GLa~NK~rYG~~~CPC 89 (142)
++++.+.+.+++.||.-|+ +..+...+++|+..--.++|+..=-+
T Consensus 34 ~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 98 (339)
T 3h5o_A 34 QLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIG 98 (339)
T ss_dssp -----------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3444466667777777663 22366789999999989999875433
No 21
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=25.68 E-value=98 Score=22.74 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhcCcEeccChhhHHHHHHHHH
Q 032339 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (142)
Q Consensus 44 e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa 76 (142)
+.|-++++.+-++ |-.+||++++..|..||-
T Consensus 7 e~ia~Y~~d~k~k--~~~~~D~~ll~kv~~~lG 37 (114)
T 2pyq_A 7 DLIAQYADDLRNK--CGMEPDMALLEKVTKGCG 37 (114)
T ss_dssp HHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC
Confidence 4444555554334 556999999999999983
No 22
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=25.62 E-value=42 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhcCcEecc------------------C--hhhHHHHHHHHHHhHhhhCCCC
Q 032339 46 MRKFSEQYARRSDTFFCV------------------D--KSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 46 ~~~~~ekyaek~Gy~lNP------------------D--~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
+++.+.+.|++.||.-|+ | ..+...+++|+..--.++|+..
T Consensus 34 tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 94 (349)
T 1jye_A 34 TREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASV 94 (349)
T ss_dssp ----------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEE
Confidence 344455666666665543 2 2466788999998888999864
No 23
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=25.62 E-value=91 Score=20.79 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCC
Q 032339 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (142)
Q Consensus 39 s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~ 85 (142)
..+.+..++.++..+++..+... .|...+..++.-|+.|--+||..
T Consensus 12 ~~~~~~~~r~~~~~~~~~~~~~~-~~~~~l~~il~~l~~Nai~h~~~ 57 (145)
T 1th8_A 12 RSENESFARVTVAAFVAQLDPTM-DELTEIKTVVSEAVTNAIIHGYN 57 (145)
T ss_dssp CTTHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred chhhHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 34567888999999998777543 46778889999999999999975
No 24
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=21.14 E-value=2.1e+02 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.030 Sum_probs=38.0
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhcCcEe---ccChhhHHHHHHHHHHhH
Q 032339 34 AQVEPSEKSVEIMRKFSEQYARRSDTFF---CVDKSVTSVVIKGLADHK 79 (142)
Q Consensus 34 ~~~~~s~~~~e~~~~~~ekyaek~Gy~l---NPD~ev~~~Vi~GLa~NK 79 (142)
-+.+.+.+.+++..+.+.+.|++.|+.+ +|-++.++.|.+.+..-+
T Consensus 187 LD~~~~~~~I~~qL~~a~~~Ar~~G~AIaIGhp~p~Ti~aL~~~~~~l~ 235 (261)
T 2qv5_A 187 LDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAG 235 (261)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHhhhhh
Confidence 3456888999999999999999999986 688888888888776654
No 25
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=21.09 E-value=86 Score=23.79 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhcCcEec----------------cC---hhhHHHHHHHHHHhHhhhCCCC
Q 032339 44 EIMRKFSEQYARRSDTFFC----------------VD---KSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 44 e~~~~~~ekyaek~Gy~lN----------------PD---~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
+++++.+.+.|++.||.-| |+ ..+...+++|+..--.++|+.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 3455556666666677544 33 4577889999999888999753
No 26
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=20.88 E-value=1.5e+02 Score=23.86 Aligned_cols=36 Identities=0% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhcCcEeccC--------hhhHHHHHHHHHH
Q 032339 41 KSVEIMRKFSEQYARRSDTFFCVD--------KSVTSVVIKGLAD 77 (142)
Q Consensus 41 ~~~e~~~~~~ekyaek~Gy~lNPD--------~ev~~~Vi~GLa~ 77 (142)
+-.+++++.++.++. .||.||++ .+-+..+++..-.
T Consensus 316 ~i~~~v~~~l~~~g~-~g~I~~~ghgi~~~~p~env~a~v~~v~~ 359 (367)
T 1r3s_A 316 EIGQLVKQMLDDFGP-HRYIANLGHGLYPDMDPEHVGAFVDAVHK 359 (367)
T ss_dssp HHHHHHHHHHHHHCS-SSEEEEESSCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCeeecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 334456666666665 79999988 3445555554433
No 27
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.68 E-value=1.1e+02 Score=23.27 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHHhhhcCcEec------------------c--ChhhHHHHHHHHHHhHhhhCCCC
Q 032339 38 PSEKSVEIMRKFSEQYARRSDTFFC------------------V--DKSVTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 38 ~s~~~~e~~~~~~ekyaek~Gy~lN------------------P--D~ev~~~Vi~GLa~NK~rYG~~~ 86 (142)
.++++.++ +.+.|++.||.-| | +..+...+++|+..--.++|+..
T Consensus 29 vs~~tr~r----V~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 93 (332)
T 2hsg_A 29 VKPSTRKK----VLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNI 93 (332)
T ss_dssp SCHHHHHH----HHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHH----HHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 56666555 4555555566543 2 23467789999998888899864
No 28
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=20.36 E-value=1.6e+02 Score=19.70 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred cEeccChh--hHHHHHHHHHHhHhhhCCCC
Q 032339 59 TFFCVDKS--VTSVVIKGLADHKDSLGAPL 86 (142)
Q Consensus 59 y~lNPD~e--v~~~Vi~GLa~NK~rYG~~~ 86 (142)
-+||.|.. +-++|++.|..||++.-..+
T Consensus 29 vylnrdmteiieeavvmwliqnkek~p~el 58 (73)
T 4a1q_A 29 VYLNRDMTEIIEEAVVMWLIQNKEKLPNEL 58 (73)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHGGGCCTTT
T ss_pred HhhcccHHHHHHHHHHHHHHhhhhhCchhh
Confidence 45777743 45689999999998875544
Done!