BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032340
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
 pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
 pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
 pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
          Length = 360

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 98  TWGLADVRINREKAGKGRPLSKKQREWR--LNTTFDSLR-LVRLHSD 141
           TWG  D  +NRE    GR ++  Q +W+  +   F  L    R+H D
Sbjct: 217 TWGFYDKLVNRESTPNGR-VAVNQNKWQEFIEKLFQRLEAFTRIHDD 262


>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
 pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
          Length = 209

 Score = 26.9 bits (58), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  SPSMEDIEAFCTTYRARLDEAEIAKSIP 34
          SPS++ +E + +T + + DE E    +P
Sbjct: 11 SPSIDQVEPYSSTAQVQFDEPEATGGVP 38


>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
 pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
 pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
 pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
 pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
 pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
          Length = 209

 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  SPSMEDIEAFCTTYRARLDEAEIAKSIP 34
          SPS++ +E + +T + + DE E    +P
Sbjct: 11 SPSIDQVEPYSSTAQVQFDEPEATGGVP 38


>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of
          Human Ncam1
          Length = 105

 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7  SPSMEDIEAFCTTYRARLDEAEIAKSIP 34
          SPS++ +E + +T + + DE E    +P
Sbjct: 9  SPSIDQVEPYSSTAQVQFDEPEATGGVP 36


>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
 pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
          Length = 215

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 7   SPSMEDIEAFCTTYRARLDEAEIAKSIP 34
           SPS++ +E + +T + + DE E    +P
Sbjct: 116 SPSIDQVEPYSSTAQVQFDEPEATGGVP 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,026,940
Number of Sequences: 62578
Number of extensions: 147758
Number of successful extensions: 355
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)