Query 032340
Match_columns 142
No_of_seqs 136 out of 1198
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ib8_A Conserved protein SP14. 100.0 9.9E-37 3.4E-41 231.9 12.1 113 1-141 45-161 (164)
2 1y96_A Gemin6, SIP2, GEM-assoc 80.2 3 0.0001 27.9 4.7 38 51-99 7-46 (86)
3 1ycy_A Conserved hypothetical 77.3 5.8 0.0002 25.3 5.1 60 53-138 8-69 (71)
4 3pgw_B SM B; protein-RNA compl 56.8 45 0.0016 26.0 7.5 32 51-93 4-37 (231)
5 1d3b_B Protein (small nuclear 55.3 6.5 0.00022 25.7 2.1 32 52-94 5-38 (91)
6 4emk_C U6 snRNA-associated SM- 54.5 11 0.00038 26.0 3.3 38 46-94 17-57 (113)
7 1ljo_A Archaeal SM-like protei 54.4 19 0.00066 22.6 4.3 32 53-94 7-40 (77)
8 3s6n_G Small nuclear ribonucle 51.9 13 0.00046 23.4 3.1 31 53-94 6-38 (76)
9 1i4k_A Putative snRNP SM-like 51.4 17 0.00058 22.8 3.6 30 54-94 7-38 (77)
10 1h64_1 SnRNP SM-like protein; 50.4 18 0.0006 22.6 3.5 30 54-94 7-38 (75)
11 1d3b_A Protein (small nuclear 48.9 21 0.00071 22.5 3.7 27 56-93 10-38 (75)
12 3s6n_F Small nuclear ribonucle 48.1 23 0.00079 23.0 3.9 31 53-94 8-40 (86)
13 3bw1_A SMX4 protein, U6 snRNA- 46.9 26 0.00088 23.2 4.1 30 54-94 13-44 (96)
14 1mgq_A SM-like protein; LSM, R 46.8 38 0.0013 21.5 4.8 34 50-94 14-49 (83)
15 1th7_A SnRNP-2, small nuclear 45.8 25 0.00085 22.3 3.8 30 54-94 12-43 (81)
16 4emk_B U6 snRNA-associated SM- 45.6 19 0.00065 22.6 3.1 30 54-94 7-38 (75)
17 4gop_A Putative uncharacterize 42.0 21 0.00072 24.5 3.1 46 47-99 4-49 (114)
18 1n9r_A SMF, small nuclear ribo 41.4 22 0.00075 23.5 3.0 30 54-93 24-55 (93)
19 1wvh_A Tensin, tensin1; beta s 40.6 15 0.00053 26.2 2.3 45 10-56 17-66 (134)
20 1i8f_A Putative snRNP SM-like 39.6 33 0.0011 21.7 3.6 30 54-94 14-45 (81)
21 4emk_A U6 snRNA-associated SM- 36.6 42 0.0014 22.2 3.9 34 50-94 18-54 (94)
22 4a53_A EDC3; RNA binding prote 36.5 36 0.0012 24.1 3.6 31 57-98 8-40 (125)
23 4emh_A Probable U6 snRNA-assoc 36.3 31 0.0011 23.4 3.2 27 56-93 21-49 (105)
24 3kdf_A Replication protein A 1 35.8 46 0.0016 23.1 4.1 46 48-99 9-55 (121)
25 2rm4_A CG6311-PB, DM EDC3; enh 33.9 1.1E+02 0.0038 20.8 6.6 61 57-139 8-70 (103)
26 2pi2_E Replication protein A 1 31.9 38 0.0013 24.2 3.2 46 48-98 30-75 (142)
27 2y9a_D Small nuclear ribonucle 31.0 52 0.0018 23.0 3.7 29 54-93 8-38 (126)
28 3byp_A CZRB protein; membrane 30.5 61 0.0021 20.4 3.8 44 5-53 51-94 (94)
29 1b34_A Protein (small nuclear 30.5 59 0.002 22.3 3.9 30 54-94 5-36 (119)
30 4emg_A Probable U6 snRNA-assoc 28.0 70 0.0024 20.9 3.8 36 44-94 5-43 (93)
31 2fwk_A U6 snRNA-associated SM- 28.0 46 0.0016 22.9 3.0 29 55-94 32-62 (121)
32 1m5q_A SMAP3, small nuclear ri 27.2 73 0.0025 22.3 4.0 30 54-94 3-34 (130)
33 2f6i_A ATP-dependent CLP prote 25.9 92 0.0031 23.3 4.6 36 6-47 46-81 (215)
34 1qd1_A Formiminotransferase-cy 25.5 43 0.0015 27.4 2.8 33 6-42 96-128 (325)
35 2qas_A SSPB, hypothetical prot 23.2 86 0.0029 23.0 3.8 82 19-135 27-112 (157)
36 2nys_A AGR_C_3712P; SSPB, stri 22.8 86 0.0029 23.4 3.8 67 34-135 36-104 (176)
37 3fb9_A Uncharacterized protein 22.6 1.7E+02 0.0059 19.3 4.9 36 54-99 18-58 (90)
38 2cby_A ATP-dependent CLP prote 21.1 1.3E+02 0.0044 22.2 4.6 57 6-68 34-92 (208)
No 1
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=100.00 E-value=9.9e-37 Score=231.90 Aligned_cols=113 Identities=20% Similarity=0.317 Sum_probs=101.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhh--hhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340 1 MSNKSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP 78 (142)
Q Consensus 1 liD~~~gvslddc~~vSr~i~~~LD--~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~ 78 (142)
+||+++|||+|||+.+||+||+.|| ++| ||+++|+|||||||++|||++++||+||+|+.|+|+++. |
T Consensus 45 ~ID~~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~-------~ 114 (164)
T 1ib8_A 45 FVDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQ-------A 114 (164)
T ss_dssp EEECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSS-------C
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEec-------c
Confidence 4799999999999999999999999 887 899999999999999999999999999999999999998 8
Q ss_pred CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340 79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 141 (142)
Q Consensus 79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~ 141 (142)
++|+++| +|.+++++.+++.+.. |+. . ..++|||++|++|||+++
T Consensus 115 ~~g~k~~~G~L~~~~~~~v~l~~~~-----------k~~---~----~~~~i~~~~I~ka~l~~e 161 (164)
T 1ib8_A 115 IDKQKVFEGTLLAFEEDELTMEYMD-----------KTR---K----KTVQIPYSLVSKARLAVK 161 (164)
T ss_dssp SSSCSEEEEEEEEEETTEEEEEEEC-----------SSC---E----EEEEECSSCCSSCEEECS
T ss_pred cCCceEEEEEEEEEeCCEEEEEEec-----------ccC---C----eEEEEEHHHCcEEEEEEE
Confidence 8999999 9999999999988641 111 1 147899999999999986
No 2
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=80.17 E-value=3 Score=27.86 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=30.6
Q ss_pred CChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEE
Q 032340 51 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTW 99 (142)
Q Consensus 51 ~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~ 99 (142)
++|.+|..++|+.|+|++.+ .+.| .|.++|.....+.+
T Consensus 7 ~~p~el~~li~KeV~V~l~d-----------g~~y~G~l~tvDp~s~sIvL 46 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASE-----------KNEYKGWVLTTDPVSANIVL 46 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETT-----------TEEEEEEEEEECTTTCCEEE
T ss_pred CCHHHHHhhcCCEEEEEEcC-----------CCEEEEEEEEECCCceEEEE
Confidence 46789999999999999987 3455 89999977765543
No 3
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=77.28 E-value=5.8 Score=25.27 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=38.8
Q ss_pred hHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecc
Q 032340 53 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF 130 (142)
Q Consensus 53 ~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~ 130 (142)
.+-++++.|+.|-|.... .-.| .|.+|+++.+-+. .+.|+.-| ||| .+-+.+
T Consensus 8 dktL~~WKg~rvAv~vg~-----------ehSFtGiledFDeEviLL~-dV~D~~GN-----k~k---------~liv~i 61 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGG-----------DHSFTGTLEDFDEEVILLK-DVVDVIGN-----RGK---------QMLIGL 61 (71)
T ss_dssp HHHHHHHTTSEEEEEEC---------------CEEEEEEECSSEEEEE-EEEETTEE-----EEE---------EEEEEG
T ss_pred HHHHHHhCCcEEEEEecC-----------cceeeeehhhcCcceeehh-hHHHHhcc-----ccc---------eeEEEe
Confidence 356789999999997755 3345 8999999987654 23333322 343 456788
Q ss_pred cccceeEE
Q 032340 131 DSLRLVRL 138 (142)
Q Consensus 131 ~~I~karl 138 (142)
++|..+.|
T Consensus 62 dDinWimL 69 (71)
T 1ycy_A 62 EDINWIML 69 (71)
T ss_dssp GGEEEEEE
T ss_pred ccceEEEe
Confidence 88877665
No 4
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=56.79 E-value=45 Score=25.96 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=26.4
Q ss_pred CChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCC
Q 032340 51 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 93 (142)
Q Consensus 51 ~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~ 93 (142)
.....+.+|+++.|.|++++ | ++| +|..||..
T Consensus 4 ~k~~kL~klIdKrV~V~Lkd----------G-Rel~GtLkgFDq~ 37 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQD----------G-RIFIGTFKAFDKH 37 (231)
T ss_pred CchHHHHHhcCCeEEEEECC----------C-cEEEEEEEEEccc
Confidence 45678899999999999988 3 455 99999876
No 5
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=55.30 E-value=6.5 Score=25.67 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=24.3
Q ss_pred ChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 52 IPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 52 ~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
....+.+++|+.|.|++++ | +.| .|.++|..-
T Consensus 5 ~~~~L~~~~~k~V~V~l~~----------g-r~~~G~L~~~D~~m 38 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQD----------G-RIFIGTFKAFDKHM 38 (91)
T ss_dssp --CCCGGGTTSEEEEEETT----------C-CEEEEEEEECCTTC
T ss_pred hhHHHHHHcCCcEEEEECC----------C-eEEEEEEEEECCCC
Confidence 3456789999999999987 4 455 999999764
No 6
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=54.52 E-value=11 Score=25.98 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=19.8
Q ss_pred CCCCCCC-hHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 46 VERVVRI-PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 46 ieRpL~~-~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
-++|-+. ..++.+++|+.|.|.+++ | +.| +|.++|..-
T Consensus 17 ~~~~kke~i~~L~~~l~k~V~V~L~d----------G-r~~~G~L~~fD~~m 57 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQRIQATFTG----------G-RQITGILKGFDQLM 57 (113)
T ss_dssp ---------------CCSEEEEEETT----------S-CEEEEEEEEECTTC
T ss_pred ccCCccchHHHHHHHcCCcEEEEEeC----------C-eEEEEEEEEEcCcc
Confidence 4566553 478889999999999987 3 455 999998764
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=54.41 E-value=19 Score=22.55 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=25.2
Q ss_pred hHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 53 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 53 ~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
...+.+++|+.|.|.+++ |++.| .|.++|.--
T Consensus 7 ~~~L~~~~~~~v~V~lk~----------g~~~~~G~L~~~D~~m 40 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMKG----------EENQLVGKLEGVDDYM 40 (77)
T ss_dssp HHHHHHTTTSEEEEEETT----------CSSEEEEEEEEECTTC
T ss_pred HHHHHHHCCCEEEEEEeC----------CCEEEEEEEEEECCcc
Confidence 456789999999999987 42455 999999763
No 8
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=51.87 E-value=13 Score=23.41 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=18.8
Q ss_pred hHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 53 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 53 ~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
...+..++|+.|.|.+++ | +.| .|.++|..-
T Consensus 6 ~~~L~~~~~k~V~V~Lk~----------g-r~~~G~L~~~D~~m 38 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLNG----------G-RHVQGILRGFDPFM 38 (76)
T ss_dssp --------CCEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred hHHHHHhCCCeEEEEECC----------C-cEEEEEEEEECCcc
Confidence 456889999999999987 3 455 999998764
No 9
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=51.39 E-value=17 Score=22.76 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.-+.+++|+.|.|.+++ | +.| .|.++|..-
T Consensus 7 ~~L~~~~~~~V~V~L~~----------g-~~~~G~L~~~D~~m 38 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLKG----------G-REFRGTLDGYDIHM 38 (77)
T ss_dssp HHHHTTTTSEEEEEETT----------S-CEEEEEEEEECTTC
T ss_pred HHHHHhCCCEEEEEEcC----------C-CEEEEEEEEEcCCC
Confidence 45678999999999987 3 444 999999764
No 10
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=50.42 E-value=18 Score=22.60 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.-+..++|+.|.|.+++ | +.| .|.++|..-
T Consensus 7 ~~L~~~~~~~V~V~l~~----------g-~~~~G~L~~~D~~m 38 (75)
T 1h64_1 7 DVIHRSLDKDVLVILKK----------G-FEFRGRLIGYDIHL 38 (75)
T ss_dssp HHHHTTTTSEEEEEETT----------S-EEEEEEEEEECTTC
T ss_pred HHHHHHCCCEEEEEECC----------C-CEEEEEEEEEeCCC
Confidence 45678999999999987 3 455 999999764
No 11
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=48.87 E-value=21 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCC
Q 032340 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 93 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~ 93 (142)
++.+.|+.|.|.+++ | ..| .|.++|+-
T Consensus 10 L~~~~g~~V~VeLk~----------g-~~~~G~L~~~D~~ 38 (75)
T 1d3b_A 10 LHEAEGHIVTCETNT----------G-EVYRGKLIEAEDN 38 (75)
T ss_dssp HHHTTTSEEEEEETT----------S-CEEEEEEEEECTT
T ss_pred HHHhCCCEEEEEECC----------C-cEEEEEEEEEccc
Confidence 467899999999987 3 344 89999976
No 12
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=48.07 E-value=23 Score=22.95 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=24.2
Q ss_pred hHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 53 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 53 ~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..-+..++|+.|.|.+++ | +.| +|.++|.--
T Consensus 8 ~~~L~~~~~k~V~V~Lk~----------g-~~~~G~L~~~D~~m 40 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLKW----------G-MEYKGYLVSVDGYM 40 (86)
T ss_dssp HHHHHHHTTSEEEEEETT----------S-CEEEEEEEEECTTC
T ss_pred HHHHHHhCCCeEEEEEcC----------C-eEEEEEEEEEcCce
Confidence 345678999999999987 4 444 999998763
No 13
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=46.89 E-value=26 Score=23.16 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..+..++|+.|.|.+++ | +.| +|.++|.--
T Consensus 13 ~~L~~~i~k~V~V~Lk~----------g-r~~~G~L~~fD~~m 44 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRG----------A-RTLVGTLQAFDSHC 44 (96)
T ss_dssp HHHGGGTTSEEEEEEGG----------G-CEEEEEEEEECTTC
T ss_pred HHHHHHCCCeEEEEECC----------C-cEEEEEEEEECCCC
Confidence 45678999999999988 3 445 999999763
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=46.82 E-value=38 Score=21.54 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 50 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 50 L~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..-...+.+++|+.|.|.+++ | +.| .|.++|..-
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~----------g-~~~~G~L~~~D~~m 49 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKG----------D-REFRGVLKSFDLHM 49 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred cChHHHHHHhCCCEEEEEEcC----------C-cEEEEEEEEECCCc
Confidence 333457888999999999987 3 445 999999774
No 15
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=45.78 E-value=25 Score=22.28 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=24.2
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..+.+++|+.|.|.+++ | +.| +|.++|..-
T Consensus 12 ~~L~~~~~~~V~V~l~~----------g-~~~~G~L~~~D~~m 43 (81)
T 1th7_A 12 KVLAESLNNLVLVKLKG----------N-KEVRGMLRSYDQHM 43 (81)
T ss_dssp HHHHHHTTSEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred HHHHHhCCCeEEEEEcC----------C-cEEEEEEEEEcCCC
Confidence 46778999999999987 3 455 999999774
No 16
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=45.60 E-value=19 Score=22.56 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=23.5
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.-+..++|+.|.|.+++ | +.| .|.++|..-
T Consensus 7 ~~L~~~~~k~V~V~Lk~----------g-~~~~G~L~~~D~~m 38 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLSS----------G-VDYKGILSCLDGYM 38 (75)
T ss_dssp HHHHHTTTSEEEEECTT----------S-CEEEEEEEEECTTC
T ss_pred HHHHHhCCCeEEEEEcC----------C-cEEEEEEEEEcCcc
Confidence 44678999999999987 3 445 999998763
No 17
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=42.04 E-value=21 Score=24.51 Aligned_cols=46 Identities=4% Similarity=-0.051 Sum_probs=31.4
Q ss_pred CCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceEEEEeEeCCeeEEEE
Q 032340 47 ERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTW 99 (142)
Q Consensus 47 eRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~~L~~~~~~~~~~~~ 99 (142)
.+|.-+..++.+|.|+.|++.-+-. ...| +.+.|.+-++..+++.+
T Consensus 4 ~tpRVn~~~L~~~~g~~VrivGkV~------~~~g-~~~~l~s~d~~~Vtv~l 49 (114)
T 4gop_A 4 PTPLINSSMLGQYVGQTVRIVGKVH------KVTG-NTLLMQTSDLGNVEIAM 49 (114)
T ss_dssp CCCEECTTTGGGGTTSEEEEEEEEE------EEET-TEEEEECTTSCEEEEEC
T ss_pred CCceECHHHHHhhCCCeEEEEEEEe------eeCC-CEEEEEeCCCCEEEEEe
Confidence 3788889999999999999876542 2233 45566665666666543
No 18
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=41.39 E-value=22 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=22.7
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCC
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 93 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~ 93 (142)
.-+..++|+.|.|.+++ |.+.| +|.++|.-
T Consensus 24 ~~L~~~i~k~V~V~Lk~----------g~~~~~G~L~~~D~~ 55 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLKF----------NSTEYRGTLVSTDNY 55 (93)
T ss_dssp --CGGGTTSEEEEEESS----------TTEEEEEEEEECCTT
T ss_pred HHHHHhCCCEEEEEEcC----------CCEEEEEEEEEEccc
Confidence 45667899999999988 42555 99999876
No 19
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=40.64 E-value=15 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCC-----CCCCChHHH
Q 032340 10 MEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE-----RVVRIPLEL 56 (142)
Q Consensus 10 lddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGie-----RpL~~~~~f 56 (142)
+...+.+.++++..|..... |-+....|+||+-||. |.+...+||
T Consensus 17 ltG~~av~~Ai~~~l~~~~~--~~~t~vh~kVS~qGItLtD~~rk~ffRrhy 66 (134)
T 1wvh_A 17 LTGPQAISKAVAETLVADPT--PTATIVHFKVSAQGITLTDNQRKLFFRRHY 66 (134)
T ss_dssp CCHHHHHHHHHHHHHTCSSC--CCCEEEEEEEETTEEEEEESSSCSSCEEEE
T ss_pred CcCHHHHHHHHHHHHhcCCC--CCCeEEEEEEEcCCCeEEccCcceEEEEec
Confidence 34567899999999975542 4567899999999973 455444444
No 20
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=39.57 E-value=33 Score=21.73 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..+.+++|+.|.|.+++ | +.| +|.++|..-
T Consensus 14 ~~L~~~~~~~V~V~l~~----------g-~~~~G~L~~~D~~m 45 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLRD----------S-HEIRGILRSFDQHV 45 (81)
T ss_dssp HHHHTTTTSEEEEEEGG----------G-EEEEEEEEEECTTC
T ss_pred HHHHHHCCCeEEEEEcC----------C-cEEEEEEEEEcCCC
Confidence 45678999999999988 3 455 999999774
No 21
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=36.63 E-value=42 Score=22.23 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCChHHH-HhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 50 VRIPLEL-ERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 50 L~~~~~f-~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
...|-.| .+++|..|.|.+++ | +.| +|.++|.--
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk~----------g-r~~~G~L~gfD~~m 54 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMKS----------E-REFAGTLVGFDDYV 54 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEESS----------S-EEEEEEEEEECTTC
T ss_pred cccCHHHHHHHcCCeEEEEECC----------C-cEEEEEEEEEcccC
Confidence 3444444 68999999999987 3 455 999998763
No 22
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=36.52 E-value=36 Score=24.14 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=25.2
Q ss_pred HhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEE
Q 032340 57 ERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCT 98 (142)
Q Consensus 57 ~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~ 98 (142)
..|+|..|.|+|++ |. .+ .+..++...++|.
T Consensus 8 sqFlGy~V~v~LkD----------gs-~~qG~I~~vd~k~LtL~ 40 (125)
T 4a53_A 8 ADFYGSNVEVLLNN----------DS-KARGVITNFDSSNSILQ 40 (125)
T ss_dssp HHHTTCEEEEEETT----------SC-EEEEEEEEEETTTTEEE
T ss_pred HHhcCceEEEEECC----------CC-EeeEEEEeecCCeeEEe
Confidence 46899999999997 22 33 8999999999983
No 23
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=36.26 E-value=31 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCC
Q 032340 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 93 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~ 93 (142)
+..++|+.|.|.+++ | ..| +|.++|.-
T Consensus 21 L~~~igk~V~V~Lk~----------G-~~~~G~L~~~D~~ 49 (105)
T 4emh_A 21 LNATQGRPILVELKN----------G-ETFNGHLENCDNY 49 (105)
T ss_dssp -----CCEEEEEETT----------S-CEEEEEEEEECTT
T ss_pred HHHhCCCEEEEEECC----------C-CEEEEEEEEEcCC
Confidence 567899999999987 3 344 89999876
No 24
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=35.75 E-value=46 Score=23.05 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=30.1
Q ss_pred CCCCChHHHHhcCCCeEEEEEeeccccCCCCCC-CCceEEEEeEeCCeeEEEE
Q 032340 48 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTW 99 (142)
Q Consensus 48 RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~-g~k~~~L~~~~~~~~~~~~ 99 (142)
+|.-+...+.+|+|+.|++.-+-. ... ..+.+.|.+-|+..+++.+
T Consensus 9 ~pRVn~s~L~~fvgk~VrivGkV~------~~~~~g~~~~l~s~Dg~~Vtv~l 55 (121)
T 3kdf_A 9 RSRINAGMLAQFIDKPVCFVGRLE------KIHPTGKMFILSDGEGKNGTIEL 55 (121)
T ss_dssp CEEECGGGGGGGTTCEEEEEEEEE------EECTTSSEEEEECTTSCEEEEEC
T ss_pred cceECHHHHHhhCCCeEEEEEEEE------EEcCCCCEEEEEeCCCCEEEEEe
Confidence 778889999999999999865542 111 1234456555555566553
No 25
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=33.93 E-value=1.1e+02 Score=20.78 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=40.1
Q ss_pred HhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccc
Q 032340 57 ERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLR 134 (142)
Q Consensus 57 ~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~ 134 (142)
+.|+|..|.|.-.+ --+.| .+..++.+.++++=- ..-|-++.+... ++++.-.+|+
T Consensus 8 edwiG~~VSI~C~d----------~LGVyQG~I~~V~~~~ItL~ka----------FrNGiplk~~~~--EVtLsa~DI~ 65 (103)
T 2rm4_A 8 QDWIGCAVSIACDE----------VLGVFQGLIKQISAEEITIVRA----------FRNGVPLRKQNA--EVVLKCTDIR 65 (103)
T ss_dssp GGGTTCEEEEEECT----------TTCEEEEEEEEEETTEEEEEEE----------EETTEECSCSSS--CEEEETTTEE
T ss_pred cceeceEEEEeeCC----------cceEeeEEEEEcccceeEEhhh----------hhcCcCcCCCCc--eEEEEecchh
Confidence 37899999998766 23456 888999888777521 223332222222 5788888998
Q ss_pred eeEEe
Q 032340 135 LVRLH 139 (142)
Q Consensus 135 karl~ 139 (142)
+..+.
T Consensus 66 ~L~II 70 (103)
T 2rm4_A 66 SIDLI 70 (103)
T ss_dssp EEEEE
T ss_pred heeee
Confidence 88774
No 26
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=31.92 E-value=38 Score=24.23 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=30.0
Q ss_pred CCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceEEEEeEeCCeeEEE
Q 032340 48 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCT 98 (142)
Q Consensus 48 RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~~L~~~~~~~~~~~ 98 (142)
+|.-+...+.+|+|+.|++.-+-..-. + +| +.+.|.+-|+..+++.
T Consensus 30 ~pRVN~s~L~~fvGk~VriVGkV~~~~---~-~G-~~~~l~s~Dg~~VtV~ 75 (142)
T 2pi2_E 30 RSRINAGMLAQFIDKPVCFVGRLEKIH---P-TG-KMFILSDGEGKNGTIE 75 (142)
T ss_dssp CEEECGGGGGGSTTCEEEEEEEEEEEC---T-TS-SEEEEECTTSCEEEEE
T ss_pred cceECHHHHHhhCCCEEEEEEEEeEEc---C-CC-CEEEEEeCCCcEEEEE
Confidence 789999999999999999876542111 1 22 3445555555555554
No 27
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=30.98 E-value=52 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCC
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 93 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~ 93 (142)
.-+..++|+.|.|.+++ | ..| +|.++|+.
T Consensus 8 ~~L~~~~gk~V~VeLkn----------G-~~~~G~L~~~D~~ 38 (126)
T 2y9a_D 8 KVLHEAEGHIVTCETNT----------G-EVYRGKLIEAEDN 38 (126)
T ss_dssp HHHHSCSSCEEEEEESS----------C-CEEEEEEEEECTT
T ss_pred HHHHHhCCCEEEEEECC----------C-cEEEEEEEEEcCc
Confidence 34678999999999988 3 455 99999976
No 28
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=30.54 E-value=61 Score=20.36 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCCh
Q 032340 5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP 53 (142)
Q Consensus 5 ~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~ 53 (142)
++..|+.+...+.+.+...|-..- ++. .-++++- |+..++|+++
T Consensus 51 ~~~~~~~~~h~i~~~ie~~l~~~~---~~~-~vtIh~e-p~~~~~~~~~ 94 (94)
T 3byp_A 51 RGDTPVEEAHRLCDELERALAQAF---PGL-QATIHVE-PEGERKRTNP 94 (94)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHS---TTE-EEEEEEE-ECC-------
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHC---CCC-EEEEEeC-CCCccccCCC
Confidence 356788899999999998885443 343 5677777 4666676654
No 29
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=30.46 E-value=59 Score=22.27 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=23.8
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..++.++|+.|.|.+++ | ..| +|.+||..-
T Consensus 5 ~~L~~~~gk~V~V~Lk~----------g-~~~~G~L~~~D~~M 36 (119)
T 1b34_A 5 RFLMKLSHETVTIELKN----------G-TQVHGTITGVDVSM 36 (119)
T ss_dssp HHHHTCTTCEEEEEETT----------C-CEEEEEEEEECTTC
T ss_pred HHHHHhCCCEEEEEEcC----------C-CEEEEEEEEEcccc
Confidence 45778999999999987 3 444 999999763
No 30
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=28.01 E-value=70 Score=20.88 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCCCCCCChHHHHhc-CCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 44 PGVERVVRIPLELERF-KDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 44 PGieRpL~~~~~f~r~-~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
-++..|| +|-+. +|..|.|.+++ | +.| .|.++|..-
T Consensus 5 ~~~~~Pl----~lL~~~~~~~V~V~l~~----------g-r~~~G~L~~~D~~m 43 (93)
T 4emg_A 5 QAVAEPL----DLVRLSLDEIVYVKLRG----------D-RELNGRLHAYDEHL 43 (93)
T ss_dssp ----CTT----HHHHTTTTSEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred cccCCCH----HHHHHhCCCEEEEEECC----------C-cEEEEEEEEECCcc
Confidence 3445555 45444 89999999987 3 455 999998763
No 31
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=28.00 E-value=46 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 55 ELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 55 ~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
=+.+++|+.|.|.+++ .+.| +|.++|..-
T Consensus 32 lL~~~l~k~V~V~Lk~-----------Gr~~~G~L~~fD~~m 62 (121)
T 2fwk_A 32 LIDKCIGNRIYVVMKG-----------DKEFSGVLRGFDEYV 62 (121)
T ss_dssp HHHHTBTSBCEEEETT-----------TEEECCEEEEECTTC
T ss_pred HHHHHcCCeEEEEECC-----------CcEEEEEEEEEcccC
Confidence 3568999999999987 3455 999998763
No 32
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=27.16 E-value=73 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
..+..++|+.|.|.+++ | +.| .|.++|.--
T Consensus 3 ~~L~~~igk~V~V~Lk~----------G-~~~~G~L~~~D~~M 34 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSN----------G-EVYKGVLHAVDNQL 34 (130)
T ss_dssp HHHHHTTTSEEEEEETT----------S-CEEEEEEEEECTTC
T ss_pred hHHHHhCCCeEEEEECC----------C-cEEEEEEEEEcccc
Confidence 35678999999999987 3 444 899998663
No 33
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=25.90 E-value=92 Score=23.33 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCC
Q 032340 6 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE 47 (142)
Q Consensus 6 ~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGie 47 (142)
|.|+-.....+.+.|..+ +.++ + .+-.|.|.|||=.
T Consensus 46 G~I~~~~a~~i~~~L~~l-~~~~---~--k~I~l~INSPGGs 81 (215)
T 2f6i_A 46 DEINKKTADELISQLLYL-DNIN---H--NDIKIYINSPGGS 81 (215)
T ss_dssp SCBCHHHHHHHHHHHHHH-HHHC---C--SCEEEEEEECCBC
T ss_pred cEECHHHHHHHHHHHHHH-HhCC---C--CcEEEEEECCCCC
Confidence 556655555555555432 2333 4 7899999999954
No 34
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=25.47 E-value=43 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEe
Q 032340 6 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS 42 (142)
Q Consensus 6 ~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVS 42 (142)
.++|+++|.++++.+...+-.+ + -+| -|.-|=+
T Consensus 96 ~~~tmeec~~lA~~~g~~i~~~-l--~VP-VyLYg~A 128 (325)
T 1qd1_A 96 RGVTMDECVRCAQAFGQRLAEE-L--GVP-VYLYGEA 128 (325)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHH-H--TCC-EEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHhhh-c--CCc-EEeehhh
Confidence 3689999999999999988543 2 233 3555544
No 35
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=23.19 E-value=86 Score=23.01 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHhhhhhhhcC--CCCCCeEEEE--ecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceEEEEeEeCCe
Q 032340 19 TYRARLDEAEIAK--SIPENTSLEV--SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMET 94 (142)
Q Consensus 19 ~i~~~LD~~d~~~--~i~~~Y~LEV--SSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~~L~~~~~~~ 94 (142)
-|..+|....-.+ |-...|++=- .-||+.=| .+++..-=..|.|.+.. .|.=+.|++++
T Consensus 27 Vvr~vL~~va~~g~LPg~HHFyITF~T~~pGV~i~----d~L~~~YP~EMTIVLQh-------------QF~dL~V~e~~ 89 (157)
T 2qas_A 27 VVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGP----QDLLSKYPDEMTIVLQH-------------QYWDLAPGETF 89 (157)
T ss_dssp HHHHHHHHHSSTTCSCTTCCEEEEEETTSTTCBCC----HHHHHHSSSEEEEEESS-------------SCEEEEECSSE
T ss_pred HHHHHHHHHHHcCCCCCccEEEEEEecCCCCccCC----HHHHhhCCCceEEEEEe-------------eecCcEEecCc
Confidence 3445555332222 3334465544 46787655 34444444667777754 33223788888
Q ss_pred eEEEEeecceehhhcccCCCCCccccccceeeeecccccce
Q 032340 95 ECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRL 135 (142)
Q Consensus 95 ~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~k 135 (142)
+.+.+....++ .++.|||+.|..
T Consensus 90 FsV~LsFgg~p------------------e~L~IPf~AI~~ 112 (157)
T 2qas_A 90 FSVTLKFGGQP------------------KRLSVPYAALTR 112 (157)
T ss_dssp EEEEEEETTEE------------------EEEEEEGGGEEE
T ss_pred EEEEEEeCCee------------------eEEEeehHHhee
Confidence 87776653222 158999999875
No 36
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=22.85 E-value=86 Score=23.43 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCCeEEEE--ecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceEEEEeEeCCeeEEEEeecceehhhccc
Q 032340 34 PENTSLEV--SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKA 111 (142)
Q Consensus 34 ~~~Y~LEV--SSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~~L~~~~~~~~~~~~~~~~v~~~~~~~ 111 (142)
...|++=- .-||+.=|- +++.--=..|.|.+.. .|.=+.|+++++.+.+....++
T Consensus 36 ~HHFyITF~T~~pGV~i~~----~L~~~YP~EMTIVLQh-------------QF~dL~V~e~~FsV~LsFgg~p------ 92 (176)
T 2nys_A 36 DHHFFITFLTGAPGVRISQ----HLKSKYAEQMTIVIQH-------------QFWDMKVTETGFEIGLSFSDTP------ 92 (176)
T ss_dssp TCCEEEEEESSSTTCBCCH----HHHHHSSSEEEEEESS-------------SCEEEEECSSEEEEEEEETTEE------
T ss_pred ccEEEEEEecCCCCccCCH----HHHhhCCCceEEEEEe-------------eecCcEEecCcEEEEEEeCCee------
Confidence 34455444 467886554 3443334667777754 3322378888887776653322
Q ss_pred CCCCCccccccceeeeecccccce
Q 032340 112 GKGRPLSKKQREWRLNTTFDSLRL 135 (142)
Q Consensus 112 ~kgk~~~~k~~~~~~~ip~~~I~k 135 (142)
.++.|||+.|..
T Consensus 93 ------------e~L~IPf~AI~~ 104 (176)
T 2nys_A 93 ------------EKLVIPYNAIRG 104 (176)
T ss_dssp ------------EEEEEEGGGEEE
T ss_pred ------------eEEEeehHHhee
Confidence 158999999874
No 37
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=22.65 E-value=1.7e+02 Score=19.35 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE-----EEEeEeCCeeEEEE
Q 032340 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-----RLISFDMETECCTW 99 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~-----~L~~~~~~~~~~~~ 99 (142)
++...++|..|.++.+. |+++. .|.++=..-+++.+
T Consensus 18 ~~l~~~vG~~V~l~An~----------GRkK~~er~GvL~etYPSvFvV~l 58 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLEN----------GRKRQKNRLGKLIEVYPSLFIVEF 58 (90)
T ss_dssp HHHHHTTTSEEEEEECC----------SSSCCSCEEEEEEEECSSEEEEEE
T ss_pred HHHHHcCCCEEEEEecC----------CcccEEEEEEEEEEecCcEEEEEE
Confidence 46778999999999876 44444 77777676666664
No 38
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=21.06 E-value=1.3e+02 Score=22.16 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCC--ChHHHHhcCCCeEEEEE
Q 032340 6 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVR--IPLELERFKDRAMYVKY 68 (142)
Q Consensus 6 ~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~--~~~~f~r~~G~~v~V~~ 68 (142)
|.|+-.....+.+.|..+-. ++ -...-.|.|.|||=. ..- ...+.-++...+|.+..
T Consensus 34 G~I~~~~a~~i~~~L~~~~~-~~----~~k~I~l~InSPGG~-v~a~~~I~~~i~~~~~pV~~~v 92 (208)
T 2cby_A 34 SEVNDEIANRLCAQILLLAA-ED----ASKDISLYINSPGGS-ISAGMAIYDTMVLAPCDIATYA 92 (208)
T ss_dssp SCBCHHHHHHHHHHHHHHHH-HC----SSSCEEEEEEECCBC-HHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEECHHHHHHHHHHHHHHHh-CC----CCCCEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEE
Confidence 55665555555555554432 22 126789999999953 211 12223344445665544
Done!