Query 032341
Match_columns 142
No_of_seqs 108 out of 506
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afi_A AP-3 complex subunit de 100.0 3.8E-41 1.3E-45 255.1 13.0 120 3-128 53-172 (173)
2 4b93_A Vesicle-associated memb 100.0 2.4E-38 8.4E-43 242.2 13.1 124 3-132 1-124 (189)
3 2vx8_A Nucleoporin-like protei 100.0 4E-36 1.4E-40 226.8 13.9 123 3-131 43-165 (169)
4 2nut_C Vesicle-trafficking pro 100.0 2.5E-30 8.4E-35 198.3 14.9 120 5-131 2-132 (196)
5 3bw6_A Synaptobrevin homolog Y 99.9 1.6E-26 5.3E-31 170.0 12.6 118 3-131 3-141 (144)
6 3kyq_A YKT6, synaptobrevin hom 99.8 4.1E-20 1.4E-24 142.3 10.5 118 3-131 1-136 (199)
7 2fh5_A Signal recognition part 98.0 1.9E-05 6.4E-10 59.9 7.5 123 7-131 13-153 (185)
8 1w63_Q Adapter-related protein 91.6 2.2 7.6E-05 30.5 9.9 48 47-94 49-96 (158)
9 1w63_M Adaptor-related protein 90.5 1.6 5.6E-05 35.9 9.2 91 4-94 1-96 (423)
10 3tjz_C Coatomer subunit zeta-1 90.0 4 0.00014 29.2 12.0 89 4-93 11-105 (153)
11 2vgl_M AP-2 complex subunit MU 86.8 11 0.00037 31.1 11.8 81 13-94 11-94 (435)
12 2vgl_S AP-2 complex subunit si 86.3 6.6 0.00022 27.3 11.0 48 47-94 49-96 (142)
13 2fz0_A R-snare NYV1P, V-snare 69.9 4.3 0.00015 29.1 3.5 57 31-87 50-114 (149)
14 3cue_C Transport protein parti 41.6 87 0.003 22.2 6.5 58 32-91 51-113 (159)
15 4a4y_A Protein MXIG; protein b 37.4 58 0.002 22.2 4.7 43 5-59 85-127 (146)
16 2j3t_D Trafficking protein par 28.8 1.9E+02 0.0064 21.8 10.4 90 32-124 118-212 (219)
17 3cue_A Transport protein parti 23.0 2E+02 0.0068 21.7 5.9 47 45-91 119-188 (219)
18 2j3t_C Trafficking protein par 21.0 2.1E+02 0.0072 19.7 13.0 87 32-121 45-137 (145)
No 1
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=255.13 Aligned_cols=120 Identities=32% Similarity=0.537 Sum_probs=114.8
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (142)
Q Consensus 3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL 82 (142)
.|+|+|||||||++|||||+..+|||..++++||+|+|++++|.+++.|+|.|||++++|++||||||+++|+++||+||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 48899999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCC
Q 032341 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSC 128 (142)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~ 128 (142)
+||+++|.++|+ .+|.+++||+|+++|+++| ++.|+|||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L-----~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVL-----AAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHH-----HHHHHHhcC
Confidence 999999999998 5789999999999999999 677888885
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2.4e-38 Score=242.24 Aligned_cols=124 Identities=32% Similarity=0.534 Sum_probs=114.0
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (142)
Q Consensus 3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL 82 (142)
.|||+|||||||++|||||+..+|||.++|++||+++|+.++|.+++.|+|.|||++++|++|+||||+++|+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCCc
Q 032341 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSL 132 (142)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~~ 132 (142)
++|+++|..+|+ ..+.++.|++++.+|.+.| ++.+.+||+++..
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l-----~~~~~~y~d~~~~ 124 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVL-----AAQLKHHSENKSL 124 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHH-----HHHHHHHHCC---
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHH-----HHHHHhhhcccch
Confidence 999999999998 4678889999999999999 4555667776553
No 3
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=100.00 E-value=4e-36 Score=226.79 Aligned_cols=123 Identities=31% Similarity=0.517 Sum_probs=109.4
Q ss_pred cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (142)
Q Consensus 3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL 82 (142)
.|+|+|+|||||++|||||++.+|||.+++++||+++++.++|.+++.|+|.|||+++||++|+||||+++|+++||+||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 48999999999999999999999999999999999999978899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSS 131 (142)
Q Consensus 83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~ 131 (142)
++|+++|.++|+. .|.++.||+|+++|++.| ++.+++||+++-
T Consensus 123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~L-----k~~~~~~~~~~~ 165 (169)
T 2vx8_A 123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVL-----AAQLKHHSENHH 165 (169)
T ss_dssp HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHH-----SCC---------
T ss_pred HHHHHHHHHHhhh-hhhccCCcchhHHHHHHH-----HHHHHHhcCccc
Confidence 9999999999984 678888999988999999 899999998763
No 4
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.97 E-value=2.5e-30 Score=198.30 Aligned_cols=120 Identities=23% Similarity=0.400 Sum_probs=106.4
Q ss_pred eeEEEEEEcC--CeEEEeeeCCC---CC----HHHHHHHHHhcCCC-CCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032341 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (142)
Q Consensus 5 ~I~Ya~VArg--~~iLae~~~~~---gn----f~~~a~~iL~kl~~-~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~ 74 (142)
||+|+||||| ++||||+++.+ |+ |.++++.+|+++|+ .+.|.+++.|+|.|||++++|++|+||||+++|
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 79999998643 55 89999999999997 678999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCC-ccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341 75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGYSVVILILKPMNRRFSCYSS 131 (142)
Q Consensus 75 ~~~aF~FL~eI~~~F~~~y~~~~~~-~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~ 131 (142)
+++||.||++|+++|...|+. .+. .+.||+++ +|++.| ++.|.+||+.+.
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~-~f~~~l-----~~~~~~y~~~~~ 132 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFI-EFDTFI-----QKTKKLYIDSRA 132 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTG-GGHHHH-----HHHHTTTSCCC-
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCchH-HHHHHH-----HHHHHHhcCccc
Confidence 999999999999999999985 443 46899995 999999 677888988754
No 5
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.94 E-value=1.6e-26 Score=169.99 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=94.9
Q ss_pred cce-eEEEEEEcC----CeEEEeeeCCC----------CCH-HHHHHHHHhcCCCCCCeEEEEeCCeEEEEE-EeCCEEE
Q 032341 3 QKS-LIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTY 65 (142)
Q Consensus 3 ~m~-I~Ya~VArg----~~iLae~~~~~----------gnf-~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L-~~~gi~y 65 (142)
|+| |+|.+|+|+ .++|+++++.+ ++| ..++++|++|+|+ +.|.+++.|+|+|||+ .+||++|
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~ 81 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICG 81 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEE
Confidence 445 555559998 68999998876 665 7889999999988 4899999999999999 7899999
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCc-cC---CCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341 66 CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-AP---ANGLNKEFGYSVVILILKPMNRRFSCYSS 131 (142)
Q Consensus 66 lcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~-a~---~ysl~~~F~~~l~~lm~~~~~~~~n~~~~ 131 (142)
|||||+++|+++||.||++|+++|.++|+...|.+ +. ||++ .+|...| .+||+.+.
T Consensus 82 l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i---------~kYqdp~~ 141 (144)
T 3bw6_A 82 VLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYI---------SKYQDPSQ 141 (144)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHH---------HHTSCC--
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHH---------HHhCchhh
Confidence 99999999999999999999999999998543665 34 5666 3444433 33877654
No 6
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.82 E-value=4.1e-20 Score=142.34 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=88.8
Q ss_pred cceeEEEEEEcC--C--eEEEeeeCCC----------CCHHH-HHHHHHhcCCCCCCeEEEEeCCeEEE-EEEeCCEEEE
Q 032341 3 QKSLIYAFVARG--N--VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (142)
Q Consensus 3 ~m~I~Ya~VArg--~--~iLae~~~~~----------gnf~~-~a~~iL~kl~~~~~k~t~~~~~~~fh-~L~~~gi~yl 66 (142)
+|-|++-.|.+. + ++|+...+.+ ++|.. +++.+++++|| +.|.+++.|+|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 455777777762 2 5677554432 44544 45799999887 68999999999999 9999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcCCCCCC--ccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAA--TAPANGLNKEFGYSVVILILKPMNRRFSCYSS 131 (142)
Q Consensus 67 cvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~--~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~ 131 (142)
||||+++|+++||+||++|+++|..+|+...|. .+.|+++ +.|+++ +.+||+++.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f-----~~l~~~-----m~~Y~dp~~ 136 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY-----TALDGH-----LSRYQNPRE 136 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCC-----CTHHHH-----HHHTTSGGG
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccccc-----HHHHHH-----HHHhCCchh
Confidence 999999999999999999999999999855553 3346654 344333 334877654
No 7
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=98.00 E-value=1.9e-05 Score=59.86 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=76.1
Q ss_pred EEEEEEcCCeEEEeeeCCCCC----HHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 032341 7 IYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (142)
Q Consensus 7 ~Ya~VArg~~iLae~~~~~gn----f~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~--gi~ylcvtd~~~~~~~aF~ 80 (142)
+.+.+.+|++||+.++....+ ...+++.+|-.=.. +..+|..|+|..++..+| |++|++|-.+-..-.-.=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 578899999999998543323 35556655543322 234678899999999976 6999999888766666669
Q ss_pred HHHHHHHHHHhhcCCCCC--Ccc----CCCCCChhhHHHHHHHhh------chhccccCCCCC
Q 032341 81 FLERVKDEFVSKYGGGKA--ATA----PANGLNKEFGYSVVILIL------KPMNRRFSCYSS 131 (142)
Q Consensus 81 FL~eI~~~F~~~y~~~~~--~~a----~~ysl~~~F~~~l~~lm~------~~~~~~~n~~~~ 131 (142)
+|++|+..|...|++... ... .++.++..|...++++-. .+.|+.|++..+
T Consensus 91 LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~k~mr~fees~k 153 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEK 153 (185)
T ss_dssp HHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhhHHhhccHhhhhh
Confidence 999999999999964311 111 345688889988877643 233566665443
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.60 E-value=2.2 Score=30.54 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=42.0
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032341 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (142)
Q Consensus 47 t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (142)
....+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 345689999999999999999999999999999999998888877665
No 9
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.46 E-value=1.6 Score=35.94 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=59.1
Q ss_pred ceeEEEEEEc--CCeEEEee-eC-CCCC-HHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 032341 4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (142)
Q Consensus 4 m~I~Ya~VAr--g~~iLae~-~~-~~gn-f~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~a 78 (142)
|||-..+|.. |.++|+-+ .. ...+ .+..-+.++.+-.+....-..+.+++.|-|...+++.|+|+++.+..--..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 5666655543 44666644 22 1222 333344444432111111234568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 032341 79 MAFLERVKDEFVSKYG 94 (142)
Q Consensus 79 F~FL~eI~~~F~~~y~ 94 (142)
+.||..+.+-+..-++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988877765
No 10
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.99 E-value=4 Score=29.19 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=62.9
Q ss_pred ceeEEEEEE--cCCeEEEeeeCCC-CCH---HHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCccc
Q 032341 4 KSLIYAFVA--RGNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI 77 (142)
Q Consensus 4 m~I~Ya~VA--rg~~iLae~~~~~-gnf---~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~ 77 (142)
.||-.-+|- +|.++|+-|-... .+. ....+.+.+++.+.++ -....+++.+-|...+++.|+|+++.+..--.
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ 89 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELM 89 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence 355555554 4678998864321 222 2233344444433233 34567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 032341 78 PMAFLERVKDEFVSKY 93 (142)
Q Consensus 78 aF~FL~eI~~~F~~~y 93 (142)
.+.||..+-+-+..-+
T Consensus 90 ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 90 LMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988888
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=86.79 E-value=11 Score=31.09 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=55.0
Q ss_pred cCCeEEEeeeCCCCCHHHHHHHHHhcCCC--C-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHH
Q 032341 13 RGNVVLAEYTEFSGNFNSIAYQCLQKLPA--S-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEF 89 (142)
Q Consensus 13 rg~~iLae~~~~~gnf~~~a~~iL~kl~~--~-~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F 89 (142)
+|.++|+-+-..... ...+....+.+.. . ...-..+.+++.|-|...+++.|+|+++.+..--..+.||..+.+-+
T Consensus 11 ~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl 89 (435)
T 2vgl_M 11 KGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM 89 (435)
T ss_dssp TCCEEEEEECSSSCC-HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCC-hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 356777765332222 2333333333321 1 12233457899999999999999999999999999999999999888
Q ss_pred HhhcC
Q 032341 90 VSKYG 94 (142)
Q Consensus 90 ~~~y~ 94 (142)
..-++
T Consensus 90 ~~yf~ 94 (435)
T 2vgl_M 90 AAYFG 94 (435)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77776
No 12
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=86.29 E-value=6.6 Score=27.31 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=42.6
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032341 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (142)
Q Consensus 47 t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~ 94 (142)
....+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 345689999999999999999999999999999999999988887776
No 13
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=69.93 E-value=4.3 Score=29.06 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCCC-C---eEEEE-eCCeEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 032341 31 IAYQCLQKLPASN-N---KFTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (142)
Q Consensus 31 ~a~~iL~kl~~~~-~---k~t~~-~~~~~fh~L~---~~gi~ylcvtd~~~~~~~aF~FL~eI~~ 87 (142)
+...+|+|+-|-+ . |++.. .|+|-=.|-. ++|.+|+|.+..+.|+-+|-.-|.+++.
T Consensus 50 i~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 50 IMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4556778875522 2 34433 5888888877 4689999999999999999999999976
No 14
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=41.62 E-value=87 Score=22.17 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHHhcCCCCC---CeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHh
Q 032341 32 AYQCLQKLPASN---NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKD-EFVS 91 (142)
Q Consensus 32 a~~iL~kl~~~~---~k~t~~~~~~~fh~L~-~~gi~ylcvtd~~~~~~~aF~FL~eI~~-~F~~ 91 (142)
.+.+.+++.|.+ .-..+.-++|-.|+.. -.|+-|++++|...+ -.-.+|.+|.. .|..
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 467778887643 4566667888777766 579999999997743 34468899987 6654
No 15
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=37.39 E-value=58 Score=22.19 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=31.7
Q ss_pred eeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEE
Q 032341 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (142)
Q Consensus 5 ~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~ 59 (142)
.|+|-.|++++ +|+++++.|. +|.-+.+--++++++..||.-.
T Consensus 85 giiyltiskdn--icqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccCc----------EeeccccccceeecceEeehhc
Confidence 48899999886 4788887764 3443445678899999999754
No 16
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=28.84 E-value=1.9e+02 Score=21.84 Aligned_cols=90 Identities=9% Similarity=0.041 Sum_probs=56.8
Q ss_pred HHHHHhcCCCCC---CeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCC-CCCccCCCCC
Q 032341 32 AYQCLQKLPASN---NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-KAATAPANGL 106 (142)
Q Consensus 32 a~~iL~kl~~~~---~k~t~~~~~~~fh~L~-~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~-~~~~a~~ysl 106 (142)
...+-+++.|.+ .-.+++.++|-.|+.. -.|+-|+.++|.. ....-.||.+|.+.|...--.+ -..-..|- -
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI-~ 194 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPI-R 194 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCC-C
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCcc-c
Confidence 345566776643 3456677888777766 5799999999986 4455579999997776541111 00111122 2
Q ss_pred ChhhHHHHHHHhhchhcc
Q 032341 107 NKEFGYSVVILILKPMNR 124 (142)
Q Consensus 107 ~~~F~~~l~~lm~~~~~~ 124 (142)
+..|...+++++.+..+.
T Consensus 195 s~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 195 CELFDQNLKLALEVAEKA 212 (219)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 367999998887765443
No 17
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=23.01 E-value=2e+02 Score=21.74 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=33.4
Q ss_pred eEEEEeCCeEEEEEE-eCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHh
Q 032341 45 KFTYNCDAHTFNYLV-DNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVS 91 (142)
Q Consensus 45 k~t~~~~~~~fh~L~-~~gi~ylcvtd~~~~~----------------------~~aF~FL~eI~~~F~~ 91 (142)
-..+..++|..|+.. -.|+-|++++|...+- ...-.||.+|...|..
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 355566776666555 6799999999987622 3456899999987775
No 18
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=21.00 E-value=2.1e+02 Score=19.67 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=53.9
Q ss_pred HHHHHhcCCCC---CCeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHH-HHHHhhcCCCC-CCccCCCC
Q 032341 32 AYQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGK-AATAPANG 105 (142)
Q Consensus 32 a~~iL~kl~~~---~~k~t~~~~~~~fh~L~-~~gi~ylcvtd~~~~~~~aF~FL~eI~-~~F~~~y~~~~-~~~a~~ys 105 (142)
...+.+++.|. ....+++-++|-.|+.. -.|+-|+.++|...+. .-.||.+|. +.|...--.+- -.-..|-.
T Consensus 45 l~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~ 122 (145)
T 2j3t_C 45 IRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTVQ 122 (145)
T ss_dssp HHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCCC
T ss_pred HHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCcee
Confidence 45666777653 34577777888666655 5799999999987443 447899999 56654211110 00111221
Q ss_pred CChhhHHHHHHHhhch
Q 032341 106 LNKEFGYSVVILILKP 121 (142)
Q Consensus 106 l~~~F~~~l~~lm~~~ 121 (142)
+..|...++.++.+-
T Consensus 123 -s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 -SELFRSRLDSYVRSL 137 (145)
T ss_dssp -CHHHHHHHHHHHTTS
T ss_pred -cHHHHHHHHHHHHhC
Confidence 467999887776543
Done!