Query 032342
Match_columns 142
No_of_seqs 122 out of 1085
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.5 4.5E-13 9.7E-18 80.0 7.2 66 24-98 1-66 (66)
2 cd05022 S-100A13 S-100A13: S-1 99.3 6E-11 1.3E-15 75.1 9.3 73 20-105 5-80 (89)
3 COG5126 FRQ1 Ca2+-binding prot 99.3 5.6E-11 1.2E-15 82.5 9.0 80 8-100 68-156 (160)
4 KOG0044 Ca2+ sensor (EF-Hand s 99.2 2.3E-11 5E-16 87.0 6.7 95 4-100 73-175 (193)
5 cd05027 S-100B S-100B: S-100B 99.2 2.6E-10 5.6E-15 72.1 10.1 79 19-105 4-84 (88)
6 KOG0027 Calmodulin and related 99.2 2.4E-10 5.2E-15 79.0 9.2 82 6-100 55-149 (151)
7 COG5126 FRQ1 Ca2+-binding prot 99.2 9.8E-11 2.1E-15 81.3 7.0 96 11-120 8-117 (160)
8 cd05025 S-100A1 S-100A1: S-100 99.1 8.8E-10 1.9E-14 70.1 9.9 79 19-106 5-86 (92)
9 cd05026 S-100Z S-100Z: S-100Z 99.1 1.8E-09 4E-14 68.9 10.4 79 19-105 6-86 (93)
10 cd05031 S-100A10_like S-100A10 99.1 1.8E-09 3.9E-14 68.9 9.7 77 20-104 5-83 (94)
11 KOG0027 Calmodulin and related 99.1 2.3E-09 5E-14 74.1 10.3 86 22-120 7-110 (151)
12 KOG0034 Ca2+/calmodulin-depend 99.1 2E-09 4.3E-14 76.9 10.0 73 23-101 104-176 (187)
13 cd05029 S-100A6 S-100A6: S-100 99.1 2.9E-09 6.2E-14 67.3 9.7 75 22-106 9-85 (88)
14 cd00052 EH Eps15 homology doma 99.1 1.5E-09 3.2E-14 64.5 7.9 63 26-103 2-64 (67)
15 smart00027 EH Eps15 homology d 99.0 3.6E-09 7.7E-14 67.8 9.2 68 22-104 9-76 (96)
16 cd00213 S-100 S-100: S-100 dom 99.0 6.4E-09 1.4E-13 65.4 9.4 74 22-105 7-84 (88)
17 PTZ00183 centrin; Provisional 99.0 7.8E-09 1.7E-13 71.1 9.2 63 24-99 91-153 (158)
18 cd00051 EFh EF-hand, calcium b 98.9 1.3E-08 2.9E-13 58.4 7.9 61 25-98 2-62 (63)
19 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.2E-08 2.7E-13 67.6 8.1 63 19-98 44-106 (116)
20 PTZ00184 calmodulin; Provision 98.9 2E-08 4.3E-13 68.1 9.3 62 24-98 85-146 (149)
21 cd05023 S-100A11 S-100A11: S-1 98.9 5.8E-08 1.3E-12 61.5 10.5 79 19-105 5-85 (89)
22 KOG0037 Ca2+-binding protein, 98.9 2.2E-08 4.7E-13 72.2 9.2 82 7-101 106-189 (221)
23 PF13833 EF-hand_8: EF-hand do 98.8 1.3E-08 2.8E-13 58.2 6.1 53 36-100 1-53 (54)
24 KOG0041 Predicted Ca2+-binding 98.8 2.6E-08 5.5E-13 71.1 8.7 80 10-102 86-165 (244)
25 KOG0030 Myosin essential light 98.8 1.7E-08 3.6E-13 68.1 6.2 104 21-139 9-131 (152)
26 cd05030 calgranulins Calgranul 98.8 1.3E-07 2.7E-12 59.8 9.0 74 20-105 5-84 (88)
27 PTZ00183 centrin; Provisional 98.8 1.1E-07 2.3E-12 65.4 9.3 66 22-100 16-81 (158)
28 KOG0028 Ca2+-binding protein ( 98.7 1.4E-07 3.1E-12 65.0 8.6 80 8-100 82-170 (172)
29 PTZ00184 calmodulin; Provision 98.7 2.3E-07 4.9E-12 62.9 9.5 67 22-101 10-76 (149)
30 PF14658 EF-hand_9: EF-hand do 98.7 1.2E-07 2.7E-12 56.3 6.9 63 27-101 2-65 (66)
31 KOG0031 Myosin regulatory ligh 98.5 9.3E-07 2E-11 60.7 8.9 51 13-72 22-72 (171)
32 KOG0038 Ca2+-binding kinase in 98.5 4.7E-07 1E-11 61.7 7.0 70 23-100 108-177 (189)
33 KOG0036 Predicted mitochondria 98.5 5.9E-07 1.3E-11 70.3 8.1 90 19-120 10-107 (463)
34 KOG0036 Predicted mitochondria 98.5 8.4E-07 1.8E-11 69.4 8.6 80 8-100 67-146 (463)
35 cd05024 S-100A10 S-100A10: A s 98.5 7.2E-06 1.6E-10 51.9 10.8 76 22-106 7-82 (91)
36 KOG0028 Ca2+-binding protein ( 98.4 2E-06 4.4E-11 59.4 8.0 69 20-101 30-98 (172)
37 PF00036 EF-hand_1: EF hand; 98.4 3.5E-07 7.5E-12 45.8 3.0 28 24-51 1-28 (29)
38 KOG0044 Ca2+ sensor (EF-Hand s 98.3 2.7E-06 5.9E-11 61.0 7.1 70 22-104 63-132 (193)
39 PF00036 EF-hand_1: EF hand; 98.3 1.3E-06 2.7E-11 43.8 3.2 26 75-100 3-28 (29)
40 PLN02964 phosphatidylserine de 98.3 5.1E-06 1.1E-10 69.2 8.3 68 20-101 140-208 (644)
41 PF12763 EF-hand_4: Cytoskelet 98.2 1.1E-05 2.5E-10 52.4 7.9 64 23-102 10-73 (104)
42 KOG0377 Protein serine/threoni 98.2 9.7E-06 2.1E-10 64.3 8.8 70 23-101 547-616 (631)
43 PLN02964 phosphatidylserine de 98.2 7.7E-06 1.7E-10 68.2 8.4 64 24-100 180-243 (644)
44 KOG0031 Myosin regulatory ligh 98.2 2E-05 4.3E-10 54.2 8.3 66 21-99 99-164 (171)
45 PF13405 EF-hand_6: EF-hand do 98.1 3.9E-06 8.3E-11 42.5 2.9 27 24-50 1-27 (31)
46 KOG0037 Ca2+-binding protein, 98.0 3.8E-05 8.3E-10 55.6 8.1 80 23-102 57-154 (221)
47 KOG0377 Protein serine/threoni 98.0 1.2E-05 2.5E-10 63.8 5.8 100 2-105 443-580 (631)
48 KOG4223 Reticulocalbin, calume 98.0 1.3E-05 2.9E-10 61.0 4.8 109 20-141 74-192 (325)
49 PF13202 EF-hand_5: EF hand; P 97.9 1.2E-05 2.7E-10 38.7 2.8 25 25-49 1-25 (25)
50 PF14788 EF-hand_10: EF hand; 97.9 4E-05 8.8E-10 43.1 5.2 49 40-101 2-50 (51)
51 PRK12309 transaldolase/EF-hand 97.9 5.1E-05 1.1E-09 60.1 7.6 55 22-102 333-387 (391)
52 KOG4065 Uncharacterized conser 97.9 8.6E-05 1.9E-09 48.8 7.1 72 25-97 69-142 (144)
53 PF10591 SPARC_Ca_bdg: Secrete 97.8 1E-05 2.2E-10 53.4 1.2 62 20-96 51-112 (113)
54 KOG0030 Myosin essential light 97.8 0.00015 3.3E-09 49.1 6.8 61 24-98 89-149 (152)
55 PF13202 EF-hand_5: EF hand; P 97.7 5E-05 1.1E-09 36.5 3.1 24 75-98 2-25 (25)
56 PF13405 EF-hand_6: EF-hand do 97.5 0.00019 4.1E-09 36.1 3.1 26 75-100 3-28 (31)
57 KOG0040 Ca2+-binding actin-bun 97.4 0.00054 1.2E-08 61.3 7.6 67 23-100 2253-2324(2399)
58 KOG0034 Ca2+/calmodulin-depend 97.4 0.00093 2E-08 47.9 7.1 29 75-103 107-135 (187)
59 KOG4251 Calcium binding protei 97.3 0.0006 1.3E-08 50.6 5.3 71 20-100 98-168 (362)
60 KOG4223 Reticulocalbin, calume 97.2 0.0013 2.9E-08 50.3 6.1 67 22-100 162-228 (325)
61 smart00054 EFh EF-hand, calciu 97.0 0.0012 2.5E-08 31.2 3.0 27 25-51 2-28 (29)
62 KOG2643 Ca2+ binding protein, 97.0 0.013 2.7E-07 46.9 10.2 79 10-99 304-383 (489)
63 PF13833 EF-hand_8: EF-hand do 96.9 0.0019 4.2E-08 36.4 4.0 30 22-51 24-53 (54)
64 KOG0046 Ca2+-binding actin-bun 96.9 0.0069 1.5E-07 49.3 8.1 70 23-104 19-89 (627)
65 smart00054 EFh EF-hand, calciu 96.7 0.0028 6.1E-08 29.8 3.0 26 75-100 3-28 (29)
66 PF13499 EF-hand_7: EF-hand do 96.6 0.0053 1.2E-07 35.9 4.2 30 20-49 37-66 (66)
67 KOG1955 Ral-GTPase effector RA 96.4 0.0081 1.8E-07 48.7 5.4 77 10-101 218-294 (737)
68 PF09279 EF-hand_like: Phospho 96.2 0.023 5E-07 34.9 5.9 63 25-99 2-68 (83)
69 smart00027 EH Eps15 homology d 96.2 0.03 6.6E-07 35.4 6.4 36 22-57 43-78 (96)
70 cd05022 S-100A13 S-100A13: S-1 96.0 0.021 4.5E-07 36.0 5.0 31 23-53 47-77 (89)
71 KOG2562 Protein phosphatase 2 96.0 0.04 8.6E-07 44.4 7.5 88 5-96 327-420 (493)
72 cd05023 S-100A11 S-100A11: S-1 95.8 0.044 9.4E-07 34.5 5.7 30 23-52 52-81 (89)
73 cd00252 SPARC_EC SPARC_EC; ext 95.5 0.02 4.4E-07 37.9 3.6 29 22-50 79-107 (116)
74 KOG2643 Ca2+ binding protein, 95.4 0.027 5.9E-07 45.0 4.6 29 76-104 429-457 (489)
75 PF09069 EF-hand_3: EF-hand; 95.4 0.27 5.9E-06 31.0 8.2 73 22-99 2-74 (90)
76 cd00052 EH Eps15 homology doma 95.2 0.079 1.7E-06 30.6 5.2 31 22-52 32-62 (67)
77 cd00213 S-100 S-100: S-100 dom 95.2 0.11 2.4E-06 32.1 6.1 31 22-52 50-80 (88)
78 KOG0751 Mitochondrial aspartat 95.2 0.036 7.8E-07 45.2 4.5 43 10-52 89-137 (694)
79 cd05026 S-100Z S-100Z: S-100Z 95.1 0.051 1.1E-06 34.3 4.4 31 23-53 53-83 (93)
80 KOG4578 Uncharacterized conser 94.9 0.021 4.5E-07 44.2 2.4 64 25-100 335-398 (421)
81 cd05025 S-100A1 S-100A1: S-100 94.8 0.1 2.2E-06 32.7 5.2 35 22-56 51-85 (92)
82 PF12763 EF-hand_4: Cytoskelet 94.8 0.034 7.3E-07 36.1 2.9 48 7-54 27-74 (104)
83 cd05030 calgranulins Calgranul 94.6 0.11 2.3E-06 32.5 4.9 31 22-52 50-80 (88)
84 cd05029 S-100A6 S-100A6: S-100 94.6 0.12 2.5E-06 32.4 5.0 30 23-52 51-80 (88)
85 cd00051 EFh EF-hand, calcium b 94.6 0.098 2.1E-06 28.9 4.3 27 23-49 36-62 (63)
86 PRK12309 transaldolase/EF-hand 94.3 0.077 1.7E-06 42.3 4.6 44 6-54 345-388 (391)
87 cd05024 S-100A10 S-100A10: A s 94.3 0.16 3.5E-06 32.1 5.1 30 24-53 49-78 (91)
88 PF14788 EF-hand_10: EF hand; 94.3 0.11 2.5E-06 29.2 3.9 30 23-52 21-50 (51)
89 KOG3555 Ca2+-binding proteogly 94.1 0.1 2.2E-06 40.7 4.6 63 20-99 247-309 (434)
90 KOG0038 Ca2+-binding kinase in 94.1 0.17 3.7E-06 34.9 5.2 62 28-101 76-137 (189)
91 KOG2562 Protein phosphatase 2 94.0 0.27 5.9E-06 39.7 7.0 81 25-118 313-398 (493)
92 KOG1029 Endocytic adaptor prot 93.7 0.18 3.9E-06 43.3 5.6 64 23-101 195-258 (1118)
93 cd05031 S-100A10_like S-100A10 93.4 0.18 4E-06 31.6 4.3 30 23-52 51-80 (94)
94 PF05042 Caleosin: Caleosin re 93.4 0.78 1.7E-05 32.5 7.7 55 74-128 98-171 (174)
95 cd05027 S-100B S-100B: S-100B 93.3 0.21 4.6E-06 31.2 4.4 30 23-52 51-80 (88)
96 KOG4251 Calcium binding protei 92.5 0.5 1.1E-05 35.4 5.9 94 23-120 236-342 (362)
97 KOG2243 Ca2+ release channel ( 91.9 0.42 9.2E-06 43.9 5.7 59 28-100 4062-4120(5019)
98 KOG0035 Ca2+-binding actin-bun 91.8 0.86 1.9E-05 39.8 7.4 78 18-103 742-819 (890)
99 KOG4666 Predicted phosphate ac 91.3 0.34 7.3E-06 37.7 4.1 64 23-100 296-359 (412)
100 PF05517 p25-alpha: p25-alpha 90.8 2.3 5.1E-05 29.4 7.6 67 28-105 7-74 (154)
101 PF14658 EF-hand_9: EF-hand do 90.4 0.64 1.4E-05 27.6 3.8 31 21-51 33-64 (66)
102 PF08414 NADPH_Ox: Respiratory 90.4 2.3 5E-05 27.3 6.6 64 24-102 31-94 (100)
103 KOG0169 Phosphoinositide-speci 89.3 1.3 2.8E-05 38.0 6.2 68 20-100 133-200 (746)
104 KOG1707 Predicted Ras related/ 89.2 3.7 8.1E-05 34.5 8.6 32 20-51 192-223 (625)
105 KOG3866 DNA-binding protein of 89.1 1.4 3.1E-05 34.1 5.8 72 26-100 247-324 (442)
106 KOG0042 Glycerol-3-phosphate d 88.7 1.1 2.3E-05 37.5 5.1 69 24-105 594-662 (680)
107 PF09068 EF-hand_2: EF hand; 87.8 4.1 8.9E-05 27.3 6.8 75 25-99 43-124 (127)
108 PF05042 Caleosin: Caleosin re 87.6 2.1 4.5E-05 30.4 5.4 71 22-99 95-165 (174)
109 PF10591 SPARC_Ca_bdg: Secrete 85.9 0.35 7.5E-06 31.8 0.8 42 6-47 71-112 (113)
110 KOG0041 Predicted Ca2+-binding 85.9 1 2.2E-05 32.8 3.2 29 74-102 101-129 (244)
111 KOG1955 Ral-GTPase effector RA 85.7 0.81 1.8E-05 37.6 2.9 46 7-52 249-294 (737)
112 KOG4666 Predicted phosphate ac 84.2 2.4 5.3E-05 33.1 4.7 80 23-119 259-338 (412)
113 PLN02952 phosphoinositide phos 82.9 17 0.00037 30.8 9.6 82 10-99 18-109 (599)
114 KOG0751 Mitochondrial aspartat 82.5 5.7 0.00012 32.9 6.4 56 30-100 81-136 (694)
115 KOG1029 Endocytic adaptor prot 80.9 11 0.00024 33.0 7.7 57 34-105 26-82 (1118)
116 KOG0998 Synaptic vesicle prote 80.4 0.81 1.8E-05 40.1 1.1 66 24-104 284-349 (847)
117 KOG0039 Ferric reductase, NADH 77.9 7.8 0.00017 33.1 6.2 78 18-101 13-90 (646)
118 KOG4347 GTPase-activating prot 74.5 6.5 0.00014 33.4 4.7 57 24-94 556-612 (671)
119 KOG3442 Uncharacterized conser 73.7 13 0.00027 25.0 5.0 44 36-89 52-95 (132)
120 PF00404 Dockerin_1: Dockerin 71.4 8.3 0.00018 17.4 2.7 18 33-50 1-18 (21)
121 PLN02952 phosphoinositide phos 69.9 19 0.00042 30.5 6.5 53 36-100 13-65 (599)
122 KOG4065 Uncharacterized conser 69.5 7.1 0.00015 26.0 3.1 29 20-48 114-142 (144)
123 KOG4004 Matricellular protein 69.0 1.9 4.2E-05 31.3 0.4 56 29-99 193-249 (259)
124 PLN02228 Phosphoinositide phos 67.9 40 0.00088 28.5 7.9 67 21-100 22-92 (567)
125 PLN02230 phosphoinositide phos 67.7 46 0.001 28.4 8.2 71 23-100 29-102 (598)
126 PF12174 RST: RCD1-SRO-TAF4 (R 67.3 14 0.0003 22.1 3.8 48 40-103 9-56 (70)
127 cd07313 terB_like_2 tellurium 65.6 22 0.00048 22.2 4.9 54 36-100 12-65 (104)
128 PF14513 DAG_kinase_N: Diacylg 65.5 8.1 0.00018 26.3 2.9 53 37-104 5-64 (138)
129 PLN02222 phosphoinositide phos 63.6 45 0.00098 28.3 7.5 66 22-100 24-90 (581)
130 KOG0040 Ca2+-binding actin-bun 61.7 25 0.00054 33.4 5.9 63 24-98 2297-2359(2399)
131 KOG1707 Predicted Ras related/ 59.6 12 0.00025 31.7 3.3 34 19-52 311-344 (625)
132 PF08726 EFhand_Ca_insen: Ca2+ 58.7 13 0.00027 22.3 2.6 27 23-50 6-32 (69)
133 PF08976 DUF1880: Domain of un 56.5 13 0.00029 24.6 2.6 31 65-99 4-34 (118)
134 KOG3866 DNA-binding protein of 55.7 28 0.00061 27.3 4.6 42 63-104 222-276 (442)
135 PF09068 EF-hand_2: EF hand; 55.5 19 0.00041 24.1 3.3 31 21-51 95-125 (127)
136 KOG4347 GTPase-activating prot 55.3 38 0.00081 29.0 5.6 31 74-104 557-587 (671)
137 PF14513 DAG_kinase_N: Diacylg 53.8 54 0.0012 22.4 5.3 65 9-85 11-82 (138)
138 PF02037 SAP: SAP domain; Int 53.5 29 0.00063 17.5 3.9 28 39-73 3-30 (35)
139 KOG1265 Phospholipase C [Lipid 53.2 95 0.0021 28.0 7.7 86 8-99 204-298 (1189)
140 KOG0998 Synaptic vesicle prote 51.1 13 0.00028 32.9 2.4 65 24-103 12-76 (847)
141 PLN02223 phosphoinositide phos 47.3 1.6E+02 0.0034 24.9 8.0 73 23-100 16-92 (537)
142 KOG1954 Endocytosis/signaling 46.9 28 0.0006 28.2 3.5 56 26-97 447-502 (532)
143 PF09373 PMBR: Pseudomurein-bi 46.7 38 0.00082 16.9 3.2 19 86-104 2-20 (33)
144 KOG3555 Ca2+-binding proteogly 46.0 37 0.00081 27.0 4.0 72 18-100 206-278 (434)
145 KOG2243 Ca2+ release channel ( 44.2 1.8E+02 0.0039 28.3 8.2 23 77-99 4062-4084(5019)
146 KOG4578 Uncharacterized conser 44.1 23 0.0005 27.9 2.6 47 5-51 349-398 (421)
147 PF00226 DnaJ: DnaJ domain; I 42.9 61 0.0013 18.1 6.9 44 57-100 4-49 (64)
148 KOG2871 Uncharacterized conser 42.1 31 0.00067 27.7 3.1 65 21-97 307-371 (449)
149 KOG0169 Phosphoinositide-speci 41.8 1.6E+02 0.0034 25.9 7.3 67 25-99 207-273 (746)
150 smart00513 SAP Putative DNA-bi 40.7 50 0.0011 16.5 4.2 27 39-72 3-29 (35)
151 PF07308 DUF1456: Protein of u 38.3 86 0.0019 18.5 5.5 48 41-101 15-62 (68)
152 TIGR02675 tape_meas_nterm tape 36.6 92 0.002 18.6 4.0 17 36-52 27-43 (75)
153 PF01023 S_100: S-100/ICaBP ty 35.2 75 0.0016 16.9 4.2 29 24-52 7-37 (44)
154 COG4103 Uncharacterized protei 34.6 1.2E+02 0.0026 20.9 4.6 61 27-100 34-94 (148)
155 PF03656 Pam16: Pam16; InterP 33.4 1.2E+02 0.0026 20.3 4.5 41 39-89 54-94 (127)
156 KOG4004 Matricellular protein 32.5 30 0.00065 25.3 1.6 30 20-49 219-248 (259)
157 PF12872 OST-HTH: OST-HTH/LOTU 30.2 1.1E+02 0.0025 17.5 6.1 23 77-99 36-58 (74)
158 PF07879 PHB_acc_N: PHB/PHA ac 28.1 45 0.00097 19.6 1.5 21 31-51 11-31 (64)
159 TIGR00599 rad18 DNA repair pro 27.9 3.3E+02 0.0072 22.1 8.8 59 40-105 269-329 (397)
160 PRK09430 djlA Dna-J like membr 26.9 2.8E+02 0.0061 20.9 6.1 54 35-100 67-120 (267)
161 KOG0506 Glutaminase (contains 26.2 2.7E+02 0.0059 23.4 6.0 63 28-99 91-157 (622)
162 PF03979 Sigma70_r1_1: Sigma-7 26.1 50 0.0011 20.1 1.6 33 35-82 17-49 (82)
163 PHA03102 Small T antigen; Revi 25.0 2.4E+02 0.0052 19.5 6.6 28 60-87 12-41 (153)
164 PF12213 Dpoe2NT: DNA polymera 24.5 1.7E+02 0.0036 17.5 7.7 67 20-100 4-72 (73)
165 PF06226 DUF1007: Protein of u 24.3 1.2E+02 0.0025 22.0 3.5 27 28-54 55-81 (212)
166 TIGR03573 WbuX N-acetyl sugar 23.9 2.5E+02 0.0054 21.9 5.5 8 65-72 303-310 (343)
167 PTZ00100 DnaJ chaperone protei 23.5 2.3E+02 0.005 18.7 6.8 28 60-87 72-99 (116)
168 PF13623 SurA_N_2: SurA N-term 23.2 2E+02 0.0044 19.6 4.3 25 87-111 47-71 (145)
169 PHA02105 hypothetical protein 23.0 98 0.0021 17.9 2.2 53 39-99 4-56 (68)
170 PF02864 STAT_bind: STAT prote 21.5 2E+02 0.0044 21.7 4.3 55 38-96 177-231 (254)
171 cd06257 DnaJ DnaJ domain or J- 20.5 1.5E+02 0.0033 15.6 6.2 30 58-87 5-34 (55)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=4.5e-13 Score=80.01 Aligned_cols=66 Identities=36% Similarity=0.660 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
+++.+|+.+|.+++|+|+.+||..++..+ +.+ .+..++...+..+|+.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-------GRD--MSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-------TSH--STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-------ccc--ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999987 543 5678888888889999999999999999999875
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=6e-11 Score=75.13 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhCC-CCCCccCHHHHHHHHHH-HHHHHhhhCCCCCCCH-HHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 20 QFKKSVEEIFAALDL-NNDGVLSRSELRKAFES-MRLIETHFGVDVATPP-EQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~-~~dG~Is~~el~~~l~~-~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
.....+..+|+.||+ +++|+|+..||+.++.. + |. .++. +++.. +++.+|.|++|.|+|+||+.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-------g~--~ls~~~~v~~----mi~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQL-------PH--LLKDVEGLEE----KMKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-------hh--hccCHHHHHH----HHHHhCCCCCCCCcHHHHHH
Confidence 344568889999999 99999999999999998 6 42 3555 66666 99999999999999999999
Q ss_pred HHHHHHHHH
Q 032342 97 EMKKIMLAI 105 (142)
Q Consensus 97 ~l~~~~~~~ 105 (142)
++..+...+
T Consensus 72 l~~~l~~~~ 80 (89)
T cd05022 72 LIGELAKAV 80 (89)
T ss_pred HHHHHHHHH
Confidence 998876554
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.25 E-value=5.6e-11 Score=82.51 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=67.6
Q ss_pred ChhhHHHHhhHHH---------HHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 032342 8 GSTVRDFVNEEEQ---------FKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIF 78 (142)
Q Consensus 8 ~~~~~~f~~~~~~---------~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 78 (142)
|....+|-+|+.. ..+++.+.|+.||.|++|+|+..++..+++.+ |. .++.+++.. ++
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-------ge--~~~deev~~----ll 134 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-------GE--RLSDEEVEK----LL 134 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-------cc--cCCHHHHHH----HH
Confidence 3455666666442 24679999999999999999999999999977 75 489999988 99
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 032342 79 EKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 79 ~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
+.+|.+++|.|++++|++++..
T Consensus 135 ~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 135 KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999998753
No 4
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=2.3e-11 Score=86.98 Aligned_cols=95 Identities=21% Similarity=0.314 Sum_probs=75.5
Q ss_pred eeeeChhhHHHHhhHH--------HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 032342 4 VIIDGSTVRDFVNEEE--------QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYD 75 (142)
Q Consensus 4 ~~~d~~~~~~f~~~~~--------~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 75 (142)
...|+.+.++|.++.- .+.+++.+.|+.||.|++|+|+++|+..++..+|.+......| ......++.++
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~--~~~~~~~~~v~ 150 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP--EDEETPEERVD 150 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC--cccccHHHHHH
Confidence 3446678888888744 5567899999999999999999999999999997655332322 33344556777
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 76 SIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 76 ~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
.+|+.+|.|+||.|+++||...+..
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhh
Confidence 8999999999999999999998864
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=2.6e-10 Score=72.12 Aligned_cols=79 Identities=23% Similarity=0.309 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 19 EQFKKSVEEIFAALD-LNNDG-VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D-~~~dG-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
+.....+..+|+.|| ++++| +|+.++|+.+++.-.+ ...|.. ++++++.. +++.+|.+++|.|+|+||+.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~--~~lg~~--~~~~~v~~----~i~~~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELS--HFLEEI--KEQEVVDK----VMETLDSDGDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhH--HHhcCC--CCHHHHHH----HHHHhCCCCCCcCcHHHHHH
Confidence 334556889999998 79999 5999999999997110 111543 67787887 99999999999999999999
Q ss_pred HHHHHHHHH
Q 032342 97 EMKKIMLAI 105 (142)
Q Consensus 97 ~l~~~~~~~ 105 (142)
++..+...+
T Consensus 76 li~~~~~~~ 84 (88)
T cd05027 76 FVAMVTTAC 84 (88)
T ss_pred HHHHHHHHH
Confidence 998765543
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-10 Score=79.00 Aligned_cols=82 Identities=28% Similarity=0.521 Sum_probs=69.4
Q ss_pred eeChhhHHHHhhHHHH-------------HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 032342 6 IDGSTVRDFVNEEEQF-------------KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTK 72 (142)
Q Consensus 6 ~d~~~~~~f~~~~~~~-------------~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~ 72 (142)
.||++.++|-+|..-+ ...+..+|+.||++++|+|+.+||+.++..+ |.+ .+.+++..
T Consensus 55 ~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-------g~~--~~~~e~~~ 125 (151)
T KOG0027|consen 55 LDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL-------GEK--LTDEECKE 125 (151)
T ss_pred CCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-------CCc--CCHHHHHH
Confidence 4567777877775422 2378999999999999999999999999998 765 78887777
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 73 LYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 73 ~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
+++.+|.+++|.|+|+||+.++..
T Consensus 126 ----mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 126 ----MIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ----HHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999999998853
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.17 E-value=9.8e-11 Score=81.31 Aligned_cols=96 Identities=25% Similarity=0.394 Sum_probs=80.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCccc
Q 032342 11 VRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSID 90 (142)
Q Consensus 11 ~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is 90 (142)
...|..+...-.++++..|+.+|++++|.|++++|..+++.+ |.+ ++..++.. ++..+|. +.+.|+
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-------g~~--~s~~ei~~----l~~~~d~-~~~~id 73 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL-------GFN--PSEAEINK----LFEEIDA-GNETVD 73 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-------CCC--CcHHHHHH----HHHhccC-CCCccC
Confidence 445556667778899999999999999999999999999987 765 78877776 9999999 899999
Q ss_pred HHHHHHHHHHHHHH--------------HhcccCCCChhhhccc
Q 032342 91 LHEFSAEMKKIMLA--------------IADGLGSCPIQMALED 120 (142)
Q Consensus 91 ~~EF~~~l~~~~~~--------------~~~~~~~~~~~~~~~~ 120 (142)
|.+|..+|.....+ ..++.|.+++.+|...
T Consensus 74 f~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~v 117 (160)
T COG5126 74 FPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRV 117 (160)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHH
Confidence 99999999876532 3677888988888876
No 8
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.14 E-value=8.8e-10 Score=70.09 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhC-CCCCCc-cCHHHHHHHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHH
Q 032342 19 EQFKKSVEEIFAALD-LNNDGV-LSRSELRKAFES-MRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFS 95 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D-~~~dG~-Is~~el~~~l~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~ 95 (142)
+.....+..+|+.|| .+++|+ |+.+||+.+++. + +..++. .++.+++.. +++.+|.+++|.|+|+||+
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l---g~~~~~--~~s~~~v~~----i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTEL---SDFLDA--QKDADAVDK----IMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH---HHHccC--CCCHHHHHH----HHHHHCCCCCCcCcHHHHH
Confidence 444567899999997 999995 999999999985 3 111122 256777776 9999999999999999999
Q ss_pred HHHHHHHHHHh
Q 032342 96 AEMKKIMLAIA 106 (142)
Q Consensus 96 ~~l~~~~~~~~ 106 (142)
.++..+...+.
T Consensus 76 ~l~~~~~~~~~ 86 (92)
T cd05025 76 VLVAALTVACN 86 (92)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 9
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=1.8e-09 Score=68.86 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 19 EQFKKSVEEIFAALD-LNNDG-VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D-~~~dG-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
+.-...+..+|+.|| .+++| +|+..||+.++.... +..++ ...++.++.+ +++.+|.+++|.|+|+||+.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~--~~~~~--~~~~~~~v~~----i~~elD~n~dG~Idf~EF~~ 77 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQREL--TDFLS--SQKDPMLVDK----IMNDLDSNKDNEVDFNEFVV 77 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHh--HHhcc--cccCHHHHHH----HHHHhCCCCCCCCCHHHHHH
Confidence 344456778899999 78998 599999999997631 11111 1245666666 99999999999999999999
Q ss_pred HHHHHHHHH
Q 032342 97 EMKKIMLAI 105 (142)
Q Consensus 97 ~l~~~~~~~ 105 (142)
++..+...+
T Consensus 78 l~~~l~~~~ 86 (93)
T cd05026 78 LVAALTVAC 86 (93)
T ss_pred HHHHHHHHH
Confidence 998876554
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.09 E-value=1.8e-09 Score=68.95 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCC-CC-CCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 20 QFKKSVEEIFAALDL-NN-DGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~-~~-dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
.....+..+|+.||. ++ +|+|+.+|++.+++... +..+|.. ++.+++.. +++.+|.+++|.|+++||+.+
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~--g~~lg~~--~s~~ei~~----~~~~~D~~~dg~I~f~eF~~l 76 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKEL--SEFLKNQ--KDPMAVDK----IMKDLDQNRDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHh--HHHhhcc--ccHHHHHH----HHHHhCCCCCCcCcHHHHHHH
Confidence 345568899999997 87 69999999999998621 1112433 67777776 999999999999999999999
Q ss_pred HHHHHHH
Q 032342 98 MKKIMLA 104 (142)
Q Consensus 98 l~~~~~~ 104 (142)
+......
T Consensus 77 ~~~~~~~ 83 (94)
T cd05031 77 VAGLSIA 83 (94)
T ss_pred HHHHHHH
Confidence 9765443
No 11
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=2.3e-09 Score=74.09 Aligned_cols=86 Identities=29% Similarity=0.418 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
...++.+|+.+|++++|+|+..+|..+++.+ |.. ++..++.. ++..+|.+++|.|+++||+.++...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-------g~~--~t~~el~~----~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-------GQN--PTEEELRD----LIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-------CCC--CCHHHHHH----HHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4668999999999999999999999999998 765 89999888 9999999999999999999999754
Q ss_pred HHH------------------HhcccCCCChhhhccc
Q 032342 102 MLA------------------IADGLGSCPIQMALED 120 (142)
Q Consensus 102 ~~~------------------~~~~~~~~~~~~~~~~ 120 (142)
... ..++.|.++..++.+.
T Consensus 74 ~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~ 110 (151)
T KOG0027|consen 74 GEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKV 110 (151)
T ss_pred hcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHH
Confidence 321 2556777777777654
No 12
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.07 E-value=2e-09 Score=76.88 Aligned_cols=73 Identities=33% Similarity=0.531 Sum_probs=62.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
.++.-+|+.||.+++|.|+.+|+.+++..+. |.......+++...++.++..+|.++||.|+++||+..+.+.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~------~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMV------GENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH------ccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4888899999999999999999999999873 432112378888889999999999999999999999998753
No 13
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.06 E-value=2.9e-09 Score=67.32 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhCC-CC-CCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 22 KKSVEEIFAALDL-NN-DGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 22 ~~~l~~~F~~~D~-~~-dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
...+-.+|..||. ++ +|+|+.+||+.++.... .+|. .++.+++.+ +++.+|.+++|.|+|+||+.++.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~----~lg~--k~t~~ev~~----m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKEL----TIGS--KLQDAEIAK----LMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHH----hcCC--CCCHHHHHH----HHHHhcCCCCCCCcHHHHHHHHH
Confidence 3456778999997 66 89999999999997420 0143 478888888 99999999999999999999998
Q ss_pred HHHHHHh
Q 032342 100 KIMLAIA 106 (142)
Q Consensus 100 ~~~~~~~ 106 (142)
.+...+-
T Consensus 79 ~l~~~~~ 85 (88)
T cd05029 79 ALALIYN 85 (88)
T ss_pred HHHHHHh
Confidence 8766543
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.06 E-value=1.5e-09 Score=64.45 Aligned_cols=63 Identities=35% Similarity=0.591 Sum_probs=54.5
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 26 EEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 26 ~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
+.+|+.+|.+++|.|+.+|+..++... | .+.+++.. +++.+|.+++|.|+++||+.++..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g----~~~~~~~~----i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------G----LPRSVLAQ----IWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------C----CCHHHHHH----HHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 568999999999999999999999876 5 35666666 999999999999999999999876543
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=3.6e-09 Score=67.80 Aligned_cols=68 Identities=32% Similarity=0.529 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
...+..+|+.+|.+++|.|+.+++..+++.. | ++.+++.. +++.+|.+++|.|+++||+.++..+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~----~~~~ev~~----i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------G----LPQTLLAK----IWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------C----CCHHHHHH----HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4568999999999999999999999999876 5 56677766 9999999999999999999999765
Q ss_pred HHH
Q 032342 102 MLA 104 (142)
Q Consensus 102 ~~~ 104 (142)
...
T Consensus 74 ~~~ 76 (96)
T smart00027 74 YRK 76 (96)
T ss_pred HHH
Confidence 544
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.00 E-value=6.4e-09 Score=65.44 Aligned_cols=74 Identities=23% Similarity=0.410 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCC--CCCCccCHHHHHHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 22 KKSVEEIFAALDL--NNDGVLSRSELRKAFESMRLIETHFGVD--VATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 22 ~~~l~~~F~~~D~--~~dG~Is~~el~~~l~~~~~~~~~~g~~--~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
.+.+..+|..||+ +++|.|+.++|..+++..+ |.+ ..++..++.. ++..+|.+++|.|++++|+.+
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~------g~~~~~~~~~~ei~~----i~~~~d~~~~g~I~f~eF~~~ 76 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETEL------PNFLKNQKDPEAVDK----IMKDLDVNKDGKVDFQEFLVL 76 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHh------hhhccCCCCHHHHHH----HHHHhccCCCCcCcHHHHHHH
Confidence 4558889999999 8999999999999997621 321 1145666766 999999999999999999999
Q ss_pred HHHHHHHH
Q 032342 98 MKKIMLAI 105 (142)
Q Consensus 98 l~~~~~~~ 105 (142)
+......+
T Consensus 77 ~~~~~~~~ 84 (88)
T cd00213 77 IGKLAVAC 84 (88)
T ss_pred HHHHHHHH
Confidence 98776543
No 17
>PTZ00183 centrin; Provisional
Probab=98.95 E-value=7.8e-09 Score=71.05 Aligned_cols=63 Identities=24% Similarity=0.416 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
.+..+|+.+|.+++|.|+..+|..++..+ |.+ ++..++.. +|..+|.+++|.|++++|..++.
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-------~~~--l~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKEL-------GET--ITDEELQE----MIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHh-------CCC--CCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHh
Confidence 45566666666666666666666666554 432 55555554 66666666666666666665554
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.92 E-value=1.3e-08 Score=58.37 Aligned_cols=61 Identities=33% Similarity=0.591 Sum_probs=53.4
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
+..+|+.+|.+++|.|+.+++..++... +.+ .+.+.+.. +|..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-------~~~--~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-------GEG--LSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-------CCC--CCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999987 644 67776666 9999999999999999998765
No 19
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=1.2e-08 Score=67.56 Aligned_cols=63 Identities=35% Similarity=0.443 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 19 EQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
......+.+.|..+|.|+||+|+.+|+..+. + + .....+. .+|..+|.|++|.||++||+..+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~----~~e~~~~----~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------D----PNEHCIK----PFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------c----chHHHHH----HHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456779999999999999999999999765 2 2 2333334 49999999999999999999998
No 20
>PTZ00184 calmodulin; Provisional
Probab=98.89 E-value=2e-08 Score=68.12 Aligned_cols=62 Identities=27% Similarity=0.566 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
.+..+|+.+|.+++|.|+.+++..++... |.+ ++...+.. +++.+|.+++|.|+++||..++
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~~~--~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-------GEK--LTDEEVDE----MIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-------CCC--CCHHHHHH----HHHhcCCCCCCcCcHHHHHHHH
Confidence 45666777777777777777776666654 432 45555554 6666777777777777776655
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.88 E-value=5.8e-08 Score=61.45 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 19 EQFKKSVEEIFAA-LDLNNDG-VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 19 ~~~~~~l~~~F~~-~D~~~dG-~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
+.....+..+|+. +|.+++| +|+.+||+.++....+ ..++ ....+.++.+ +++.+|.|++|.|+|+||+.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~--~~~~--~~~~~~~~~~----ll~~~D~d~DG~I~f~EF~~ 76 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELA--SFTK--NQKDPGVLDR----MMKKLDLNSDGQLDFQEFLN 76 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhh--Hhhc--CCCCHHHHHH----HHHHcCCCCCCcCcHHHHHH
Confidence 3445567889999 6788876 9999999999986521 0111 1245566666 99999999999999999999
Q ss_pred HHHHHHHHH
Q 032342 97 EMKKIMLAI 105 (142)
Q Consensus 97 ~l~~~~~~~ 105 (142)
++..+...+
T Consensus 77 l~~~l~~~~ 85 (89)
T cd05023 77 LIGGLAVAC 85 (89)
T ss_pred HHHHHHHHH
Confidence 998775543
No 22
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.87 E-value=2.2e-08 Score=72.17 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=69.6
Q ss_pred eChhhHHHHhhHH--HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Q 032342 7 DGSTVRDFVNEEE--QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLD 84 (142)
Q Consensus 7 d~~~~~~f~~~~~--~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~ 84 (142)
|+++.+.|.||.. ...+.++.+|+.||+|+.|.|+..||+.++..+ |.. ++++-... +++.+|..
T Consensus 106 ~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-------Gy~--Lspq~~~~----lv~kyd~~ 172 (221)
T KOG0037|consen 106 DNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQL-------GYR--LSPQFYNL----LVRKYDRF 172 (221)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHc-------CcC--CCHHHHHH----HHHHhccc
Confidence 4567888888866 445789999999999999999999999999988 865 77765544 99999988
Q ss_pred CCCcccHHHHHHHHHHH
Q 032342 85 SSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 85 ~~g~Is~~EF~~~l~~~ 101 (142)
++|.|.+++|++++..+
T Consensus 173 ~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 173 GGGRIDFDDFIQCCVVL 189 (221)
T ss_pred cCCceeHHHHHHHHHHH
Confidence 89999999999998654
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.85 E-value=1.3e-08 Score=58.20 Aligned_cols=53 Identities=32% Similarity=0.700 Sum_probs=46.0
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 36 NDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 36 ~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
.+|.|+.++|..++..+ |.+. ++++++.. +|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~-------g~~~-~s~~e~~~----l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-------GIKD-LSEEEVDR----LFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-------TSSS-SCHHHHHH----HHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-------CCCC-CCHHHHHH----HHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999765 6532 78888877 999999999999999999999865
No 24
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.84 E-value=2.6e-08 Score=71.07 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=69.2
Q ss_pred hhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcc
Q 032342 10 TVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSI 89 (142)
Q Consensus 10 ~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~I 89 (142)
-+.+|-+|.....+.+..+|+.||.+.||+|+..||+.+++++ |-| -|.-.+.. +++.+|.|.+|.|
T Consensus 86 ~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-------gap--QTHL~lK~----mikeVded~dgkl 152 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-------GAP--QTHLGLKN----MIKEVDEDFDGKL 152 (244)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh-------CCc--hhhHHHHH----HHHHhhcccccch
Confidence 3678888888888999999999999999999999999999998 765 45544555 9999999999999
Q ss_pred cHHHHHHHHHHHH
Q 032342 90 DLHEFSAEMKKIM 102 (142)
Q Consensus 90 s~~EF~~~l~~~~ 102 (142)
+|.||.-+++...
T Consensus 153 SfreflLIfrkaa 165 (244)
T KOG0041|consen 153 SFREFLLIFRKAA 165 (244)
T ss_pred hHHHHHHHHHHHh
Confidence 9999998887643
No 25
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.80 E-value=1.7e-08 Score=68.07 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCC--CCCcccHHHHHHHH
Q 032342 21 FKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLD--SSGSIDLHEFSAEM 98 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~--~~g~Is~~EF~~~l 98 (142)
...+++.+|..||..+||+|+...+..+++.+ |.+ +|..++.+ ....+..+ +-.+|+|++|.-++
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-------G~n--PT~aeV~k----~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-------GQN--PTNAEVLK----VLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHh-------cCC--CcHHHHHH----HHcCcccchhhhhhhhHHHHHHHH
Confidence 34678999999999999999999999999998 876 99999888 77777766 44689999999998
Q ss_pred HHHHHH----------------HhcccCCCChhhhccccchHHH-HHHHHhHhcccCC
Q 032342 99 KKIMLA----------------IADGLGSCPIQMALEDDDQNFL-KKAADLEASKLSH 139 (142)
Q Consensus 99 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 139 (142)
..+..+ +.++.|.++-.++++. ...+ .+..++|...|++
T Consensus 76 q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhv--LttlGekl~eeEVe~Lla 131 (152)
T KOG0030|consen 76 QQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHV--LTTLGEKLTEEEVEELLA 131 (152)
T ss_pred HHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHH--HHHHHhhccHHHHHHHHc
Confidence 876654 3566777777777776 4444 4445555554443
No 26
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.76 E-value=1.3e-07 Score=59.76 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCC--CCCccCHHHHHHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHHhcCCCCCCcccHHH
Q 032342 20 QFKKSVEEIFAALDLN--NDGVLSRSELRKAFESMRLIETHFGVDVATP----PEQLTKLYDSIFEKFDLDSSGSIDLHE 93 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~--~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~----~~~~~~~~~~l~~~~d~~~~g~Is~~E 93 (142)
.....+-.+|+.|+.+ .+|+|+.+||+.++.... |. .++ ..++.. +++.+|.+++|.|+|+|
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~------g~--~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~e 72 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL------PN--FLKKEKNQKAIDK----IFEDLDTNQDGQLSFEE 72 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh------hH--hhccCCCHHHHHH----HHHHcCCCCCCcCcHHH
Confidence 3345577889999965 489999999999997431 21 133 666666 99999999999999999
Q ss_pred HHHHHHHHHHHH
Q 032342 94 FSAEMKKIMLAI 105 (142)
Q Consensus 94 F~~~l~~~~~~~ 105 (142)
|+.++..+...+
T Consensus 73 F~~~~~~~~~~~ 84 (88)
T cd05030 73 FLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHHh
Confidence 999998876654
No 27
>PTZ00183 centrin; Provisional
Probab=98.75 E-value=1.1e-07 Score=65.38 Aligned_cols=66 Identities=33% Similarity=0.591 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
...+..+|..+|.+++|.|+..+|..++..+ |.+ ++...+.. +++.+|.+++|.|+++||..++..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-------g~~--~~~~~~~~----l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSL-------GFE--PKKEEIKQ----MIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-------CCC--CCHHHHHH----HHHHhCCCCCCcEeHHHHHHHHHH
Confidence 4568889999999999999999999999876 654 55555555 888899999999999999887654
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.4e-07 Score=65.00 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=63.4
Q ss_pred ChhhHHHHhhHHHH---------HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 032342 8 GSTVRDFVNEEEQF---------KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIF 78 (142)
Q Consensus 8 ~~~~~~f~~~~~~~---------~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 78 (142)
|++.+.|-.+.... ...+...|+.+|-+++|+|+..+|+.+...+ | ++++.+++.+ +.
T Consensus 82 ~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-------g--enltD~El~e----MI 148 (172)
T KOG0028|consen 82 GSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-------G--ENLTDEELME----MI 148 (172)
T ss_pred cCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-------C--ccccHHHHHH----HH
Confidence 45666666554432 3467888999999999999999999988887 6 3588988888 88
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 032342 79 EKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 79 ~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..+|.+++|.|+.+||..++.+
T Consensus 149 eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 149 EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHhcccccccccHHHHHHHHhc
Confidence 8899999999999999888764
No 29
>PTZ00184 calmodulin; Provisional
Probab=98.70 E-value=2.3e-07 Score=62.88 Aligned_cols=67 Identities=27% Similarity=0.509 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
...+...|..+|.+++|.|+.++|..++..+ +.+ ++.+++.. +++.+|.+++|.|++++|+.++...
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-------~~~--~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSL-------GQN--PTEAELQD----MINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-------CCC--CCHHHHHH----HHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4568889999999999999999999998776 654 55555555 9999999999999999999887643
No 30
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=1.2e-07 Score=56.27 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=56.0
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHH
Q 032342 27 EIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSS-GSIDLHEFSAEMKKI 101 (142)
Q Consensus 27 ~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~-g~Is~~EF~~~l~~~ 101 (142)
..|+.+|+++.|.|....+...++.. +.+ .++..++.. +...+|+++. |.|+++.|+..|+.|
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~-------~~~-~p~e~~Lq~----l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV-------TGR-SPEESELQD----LINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH-------cCC-CCcHHHHHH----HHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 36999999999999999999999988 652 477778777 9999999988 999999999999876
No 31
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.55 E-value=9.3e-07 Score=60.69 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=42.8
Q ss_pred HHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 032342 13 DFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTK 72 (142)
Q Consensus 13 ~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~ 72 (142)
-|..+.+...+++++.|...|.|+||.|..++|+.++.++ |.. .+.+++..
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-------Gk~--~~d~elDa 72 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-------GKI--ASDEELDA 72 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-------CCC--CCHHHHHH
Confidence 4566777888999999999999999999999999999887 654 66666655
No 32
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.53 E-value=4.7e-07 Score=61.73 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=62.1
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
-++.-.|+.||-|+|+.|...++...+.++.+ ..++.+++...++++....|.+++|++++.||..++.+
T Consensus 108 lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr--------~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR--------DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhhheeEEeecCCCCcccHHHHHHHHHHHhh--------ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 34666799999999999999999999998731 24899999999999999999999999999999998865
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.51 E-value=5.9e-07 Score=70.27 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 19 EQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
.+.+.+++.+|+.+|.+++|.++..++...+.++ ..| ++..+.+.. +|+.+|.|.+|.++|+||..++
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-------~~~-~~~~~~~~~----l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-------DHP-KPNYEAAKM----LFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-------CCC-CCchHHHHH----HHHhcccCcCCcccHHHHHHHH
Confidence 3456779999999999999999999999999987 655 455555555 9999999999999999999999
Q ss_pred HHHHHH--------HhcccCCCChhhhccc
Q 032342 99 KKIMLA--------IADGLGSCPIQMALED 120 (142)
Q Consensus 99 ~~~~~~--------~~~~~~~~~~~~~~~~ 120 (142)
...... +.+++|.+.+.++...
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~ 107 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRY 107 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHH
Confidence 764433 2556777877777654
No 34
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.49 E-value=8.4e-07 Score=69.43 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=72.5
Q ss_pred ChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 032342 8 GSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSG 87 (142)
Q Consensus 8 ~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g 87 (142)
+-.+.+|..+...-+.++.++|+..|.++||.|..+|+.+.++.+ |.+ ++.+++.. +++..|+++++
T Consensus 67 ~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-------gi~--l~de~~~k----~~e~~d~~g~~ 133 (463)
T KOG0036|consen 67 RVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-------GIQ--LSDEKAAK----FFEHMDKDGKA 133 (463)
T ss_pred cccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHh-------CCc--cCHHHHHH----HHHHhccCCCe
Confidence 357888888888889999999999999999999999999999998 865 89998887 99999999999
Q ss_pred cccHHHHHHHHHH
Q 032342 88 SIDLHEFSAEMKK 100 (142)
Q Consensus 88 ~Is~~EF~~~l~~ 100 (142)
.|+++||...+.-
T Consensus 134 ~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 134 TIDLEEWRDHLLL 146 (463)
T ss_pred eeccHHHHhhhhc
Confidence 9999999998753
No 35
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=7.2e-06 Score=51.90 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
..-+-.+|..|- .+.|.++..||+.++.+-.+ ..++- .-.+..+.. +++.+|.|+||.|+|.||..++..+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp--~~l~~--~~d~~~vd~----im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFS--EFLKN--QNDPMAVDK----IMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhH--HHHcC--CCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 344667899998 44679999999999976421 11221 235555555 9999999999999999999999887
Q ss_pred HHHHh
Q 032342 102 MLAIA 106 (142)
Q Consensus 102 ~~~~~ 106 (142)
...+.
T Consensus 78 ~~ac~ 82 (91)
T cd05024 78 LIACN 82 (91)
T ss_pred HHHHH
Confidence 66543
No 36
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2e-06 Score=59.35 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
...++++..|..+|++++|+|..+||..+++++ |.. +...++.+ +...+|+++.|.|++++|...+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral-------GFE--~~k~ei~k----ll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL-------GFE--PKKEEILK----LLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc-------CCC--cchHHHHH----HHHhhhhccCceechHHHHHHHH
Confidence 345678888999999999999999998888877 654 66777666 77777777777777777777765
Q ss_pred HH
Q 032342 100 KI 101 (142)
Q Consensus 100 ~~ 101 (142)
..
T Consensus 97 ~k 98 (172)
T KOG0028|consen 97 VK 98 (172)
T ss_pred HH
Confidence 43
No 37
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.40 E-value=3.5e-07 Score=45.81 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
.++.+|+.+|+|++|+|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3688999999999999999999999875
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.31 E-value=2.7e-06 Score=61.01 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
......+|..+|.|++|.|+..||..++..+ - . .+.++-. ...|+.+|.+++|.|+++|+..++..+
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-------~-r--Gt~eekl---~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLT-------S-R--GTLEEKL---KWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-------c-C--CcHHHHh---hhhheeecCCCCceEcHHHHHHHHHHH
Confidence 3457788999999999999999988888765 1 1 3444333 346999999999999999999888766
Q ss_pred HHH
Q 032342 102 MLA 104 (142)
Q Consensus 102 ~~~ 104 (142)
...
T Consensus 130 ~~m 132 (193)
T KOG0044|consen 130 YQM 132 (193)
T ss_pred HHH
Confidence 554
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.27 E-value=1.3e-06 Score=43.76 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 75 DSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 75 ~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..+|+.+|.|++|.|+++||+.++..
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 34999999999999999999999875
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.25 E-value=5.1e-06 Score=69.22 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFG-VDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
.-.+.+.+.|+.+|++++|++ +..+++.+ | .. ++..+. ..+..+|+.+|.+++|.|+++||..++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-------G~~~--pte~e~-~fi~~mf~~~D~DgdG~IdfdEFl~lL 205 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSC-------SIED--PVETER-SFARRILAIVDYDEDGQLSFSEFSDLI 205 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-------CCCC--CCHHHH-HHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 334567778888888888876 56666655 5 22 444431 224458888888888888888888877
Q ss_pred HHH
Q 032342 99 KKI 101 (142)
Q Consensus 99 ~~~ 101 (142)
..+
T Consensus 206 ~~l 208 (644)
T PLN02964 206 KAF 208 (644)
T ss_pred HHh
Confidence 653
No 41
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.22 E-value=1.1e-05 Score=52.39 Aligned_cols=64 Identities=33% Similarity=0.599 Sum_probs=53.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIM 102 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~ 102 (142)
+.+..+|+.+|+ .+|.|+.++...++... | ++.+.+.+ ||...|.+++|.++++||+.+|.-+.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S-------~----L~~~~L~~----IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS-------G----LPRDVLAQ----IWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT-------T----SSHHHHHH----HHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc-------C----CCHHHHHH----HHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 457889999986 58999999999999877 6 55777777 99999999999999999999996553
No 42
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.22 E-value=9.7e-06 Score=64.26 Aligned_cols=70 Identities=30% Similarity=0.573 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
..+..+|+..|.|+.|.|+.+||+.+.+-+ .+.++ ..++.+++.+ +-+..|.|+||.|++.||..+.+-.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~---~sh~~--~~i~~~~i~~----la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLL---SSHMN--GAISDDEILE----LARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHH---HhhcC--CCcCHHHHHH----HHHhhccCCCCcccHHHHHHHHhhh
Confidence 347889999999999999999999999876 33334 4589999988 8899999999999999999998643
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.21 E-value=7.7e-06 Score=68.15 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=56.9
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
.+..+|+.+|.+++|.|+.+||..++..+ +. ..+.+++.. +|+.+|.+++|.|+++||..++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-------g~--~~seEEL~e----aFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAF-------GN--LVAANKKEE----LFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHh-------cc--CCCHHHHHH----HHHHhCCCCCCcCCHHHHHHHHHh
Confidence 37899999999999999999999999876 53 267777777 999999999999999999999987
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.16 E-value=2e-05 Score=54.25 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 21 FKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
+++.+...|+.||.++.|.|..+.|+.+|... |- ..+++++.+ +|+.+-.+..|.|+|.+|+.++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-------gD--r~~~eEV~~----m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTM-------GD--RFTDEEVDE----MYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHh-------cc--cCCHHHHHH----HHHhCCcccCCceeHHHHHHHHH
Confidence 34567889999999999999999999999987 64 499999998 99999999999999999999886
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.09 E-value=3.9e-06 Score=42.49 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.3
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFE 50 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~ 50 (142)
+++.+|+.+|.+++|+|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 368899999999999999999999998
No 46
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.04 E-value=3.8e-05 Score=55.61 Aligned_cols=80 Identities=24% Similarity=0.443 Sum_probs=56.3
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHH----------HHHHHHhhhCCC--CCCCHHHHHHH------HHHHHHhcCCC
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFE----------SMRLIETHFGVD--VATPPEQLTKL------YDSIFEKFDLD 84 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~----------~~~~~~~~~g~~--~~~~~~~~~~~------~~~l~~~~d~~ 84 (142)
..+..+|...|++..|.|+.+|++.++. ++-.+..+|.-+ +.+...|...+ |..+|+.+|.|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3467788888888888888888888864 222234444433 34555555543 56688889999
Q ss_pred CCCcccHHHHHHHHHHHH
Q 032342 85 SSGSIDLHEFSAEMKKIM 102 (142)
Q Consensus 85 ~~g~Is~~EF~~~l~~~~ 102 (142)
++|.|+..|+.+++..+.
T Consensus 137 ~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLG 154 (221)
T ss_pred CCCcccHHHHHHHHHHcC
Confidence 999999999888887654
No 47
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.03 E-value=1.2e-05 Score=63.82 Aligned_cols=100 Identities=24% Similarity=0.369 Sum_probs=76.6
Q ss_pred ceeeeeChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCC--------CC-------
Q 032342 2 GVVIIDGSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVA--------TP------- 66 (142)
Q Consensus 2 ~~~~~d~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~--------~~------- 66 (142)
|+-+|+.|.++.+.+-+.+....+...|+.+|++..|+|+......+++.+ ..+|+|+- .+
T Consensus 443 R~~~vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i----~~L~LPWr~L~~kla~~s~d~~v~Y 518 (631)
T KOG0377|consen 443 RMGIVEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENI----TGLNLPWRLLRPKLANGSDDGKVEY 518 (631)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHH----hcCCCcHHHhhhhccCCCcCcceeh
Confidence 456788889999999999999999999999999999999999999999865 23344311 00
Q ss_pred ------------HHHHH-----------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 032342 67 ------------PEQLT-----------KLYDSIFEKFDLDSSGSIDLHEFSAEMKKIMLAI 105 (142)
Q Consensus 67 ------------~~~~~-----------~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~~~ 105 (142)
.+++. ..++.+|+..|.|++|.|+.+||.+++.-+...+
T Consensus 519 ~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 519 KSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 01100 0124599999999999999999999997666553
No 48
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=1.3e-05 Score=60.97 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
.....+..++..+|.+++|.|+..|+..++... ++..+.....+-+..+|.+.+|.|+|+|+.....
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s-------------~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQS-------------QKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 445678999999999999999999999999754 2334444455588899999999999999998886
Q ss_pred HHHH---HHhc-ccCCCChhhhccc------cchHHHHHHHHhHhcccCCCC
Q 032342 100 KIML---AIAD-GLGSCPIQMALED------DDQNFLKKAADLEASKLSHPS 141 (142)
Q Consensus 100 ~~~~---~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 141 (142)
.+-. ...+ ..+.....++..+ .+......+.-+|+.+|+||+
T Consensus 141 ~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 141 GRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred hcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 5321 0000 0111112222211 112223344678999999997
No 49
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.93 E-value=1.2e-05 Score=38.71 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAF 49 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l 49 (142)
++..|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998764
No 50
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.92 E-value=4e-05 Score=43.11 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=38.3
Q ss_pred cCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 40 LSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 40 Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
++..|++.+++.+ ++. +....+.. +|+.+|.+++|.+..+||..++..+
T Consensus 2 msf~Evk~lLk~~-------NI~--~~~~yA~~----LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-------NIE--MDDEYARQ----LFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHT-------T------HHHHHH----HHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-------ccC--cCHHHHHH----HHHHhcccCCCCccHHHHHHHHHHh
Confidence 5788999999877 654 77777777 9999999999999999999988753
No 51
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.91 E-value=5.1e-05 Score=60.07 Aligned_cols=55 Identities=29% Similarity=0.553 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
...+..+|+.+|.+++|.|+.+||.. .. .+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~----------------------~~----~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG----------------------SD----AVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH----------------------HH----HHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34567799999999999999999831 11 29999999999999999999999765
Q ss_pred H
Q 032342 102 M 102 (142)
Q Consensus 102 ~ 102 (142)
.
T Consensus 387 ~ 387 (391)
T PRK12309 387 L 387 (391)
T ss_pred H
Confidence 4
No 52
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=8.6e-05 Score=48.79 Aligned_cols=72 Identities=25% Similarity=0.349 Sum_probs=57.8
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCC-C-CCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGV-D-VATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~-~-~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
--..|++.|-|++|.|+-=|+..++...-.... -|. | +-++..++...++.+++.-|.|+||.|+|-||.+.
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~-~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHD-SGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhh-cCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 445899999999999999999999987633111 122 2 33577788999999999999999999999999864
No 53
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.76 E-value=1e-05 Score=53.36 Aligned_cols=62 Identities=34% Similarity=0.516 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
.....+.+.|..+|.|+||.|+..|+..+...+ . ....=+.. +++.+|.|+||.||+.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-------~----~~e~C~~~----F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-------M----PPEHCARP----FFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-------S----TTGGGHHH----HHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-------h----hhHHHHHH----HHHHcCCCCCCCCCHHHHcc
Confidence 344568889999999999999999998765533 1 22222334 99999999999999999975
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=0.00015 Score=49.15 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
.+-+..+.||+.++|.|...+|+.++.++ |- .++.+++.+ +..-. .|.+|.|+|+.|+..+
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttl-------Ge--kl~eeEVe~----Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTL-------GE--KLTEEEVEE----LLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHH-------Hh--hccHHHHHH----HHccc-cccCCcCcHHHHHHHH
Confidence 35567899999999999999999999998 74 499999987 54443 5778999999999865
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.73 E-value=5e-05 Score=36.54 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHH
Q 032342 75 DSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 75 ~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
+..|+.+|.|++|.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 348999999999999999998864
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.45 E-value=0.00019 Score=36.13 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 75 DSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 75 ~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..+|+.+|.+++|.|+.+||..++.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45999999999999999999999974
No 57
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.45 E-value=0.00054 Score=61.32 Aligned_cols=67 Identities=21% Similarity=0.436 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCH-----HHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPP-----EQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~-----~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
..+..+|++||++.+|.+++.+|+.|++.. |+.-++-. .++.. ++..+|++.+|.|++.+|+.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-------gY~lpmvEe~~~~p~fe~----~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-------GYDLPMVEEGEPEPEFEE----ILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc-------CCCCcccccCCCChhHHH----HHHhcCCCCcCcccHHHHHHH
Confidence 456779999999999999999999999988 66421212 24454 999999999999999999999
Q ss_pred HHH
Q 032342 98 MKK 100 (142)
Q Consensus 98 l~~ 100 (142)
|..
T Consensus 2322 mi~ 2324 (2399)
T KOG0040|consen 2322 MIS 2324 (2399)
T ss_pred HHh
Confidence 864
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00093 Score=47.86 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 75 DSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 75 ~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
+-.|+.+|.+++|.|+.+|+.+++..+..
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 34899999999999999999999887654
No 59
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.29 E-value=0.0006 Score=50.61 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
....++..+|+..|-|.||+|+..|+++.|..-. ...|. -..++-.. .|+..|++++|.|+|+||..-..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImekt--aEHfq----eameeSkt----hFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKT--AEHFQ----EAMEESKT----HFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHH--HHHHH----HHHhhhhh----heeeeCCCCCCceehhhhhhHHH
Confidence 4456789999999999999999999999987542 12221 11122223 89999999999999999987664
Q ss_pred H
Q 032342 100 K 100 (142)
Q Consensus 100 ~ 100 (142)
.
T Consensus 168 a 168 (362)
T KOG4251|consen 168 A 168 (362)
T ss_pred h
Confidence 3
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0013 Score=50.27 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..+-+.-|+..|.|++|.++.+||..++.=- -. +++.. =++..-+...|+|+||+|+++||+.=+..
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE-------e~-p~M~~----iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPE-------EH-PHMKD----IVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChh-------hc-chHHH----HHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 3445678999999999999999999887521 01 11222 23344788899999999999999988754
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.98 E-value=0.0012 Score=31.18 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=24.2
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 577999999999999999999988864
No 62
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.013 Score=46.86 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=58.5
Q ss_pred hhHHHHhhHHHHHHH-HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCc
Q 032342 10 TVRDFVNEEEQFKKS-VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGS 88 (142)
Q Consensus 10 ~~~~f~~~~~~~~~~-l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~ 88 (142)
++.+|.+|++.+..+ +.--|..+|+..+|.|+..+|..++-... + ...+.....+.++-+.+..+ +-.
T Consensus 304 s~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a------~----~n~~~k~~~lkrvk~kf~~~-~~g 372 (489)
T KOG2643|consen 304 SIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYA------G----VNSKKKHKYLKRVKEKFKDD-GKG 372 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHc------c----cchHhHHHHHHHHHHhccCC-CCC
Confidence 466777777766655 44569999999999999999999887651 2 33444455666788888766 668
Q ss_pred ccHHHHHHHHH
Q 032342 89 IDLHEFSAEMK 99 (142)
Q Consensus 89 Is~~EF~~~l~ 99 (142)
||++||.+...
T Consensus 373 ISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 373 ISLQEFKAFFR 383 (489)
T ss_pred cCHHHHHHHHH
Confidence 99999888763
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.92 E-value=0.0019 Score=36.36 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
.+.+..+|..+|.+++|+|+.+||..++..
T Consensus 24 ~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 24 EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 356899999999999999999999988763
No 64
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.88 E-value=0.0069 Score=49.34 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVD-VATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
..++..|...| +++|+|+..++..++... +.+ ++...+++.. +....+.+.+|.|++++|+.++...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-------~~~~g~~~~eei~~----~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-------KLPLGYFVREEIKE----ILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-------cccccchhHHHHHH----HHhccCCCcCCccCHHHHHHHHHhh
Confidence 45788899999 999999999999999876 433 2344666666 9999999999999999999977655
Q ss_pred HHH
Q 032342 102 MLA 104 (142)
Q Consensus 102 ~~~ 104 (142)
...
T Consensus 87 ~s~ 89 (627)
T KOG0046|consen 87 KSK 89 (627)
T ss_pred hhh
Confidence 443
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.67 E-value=0.0028 Score=29.77 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 75 DSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 75 ~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..+|+.+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 34899999999999999999998864
No 66
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.56 E-value=0.0053 Score=35.87 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAF 49 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l 49 (142)
.....+..+|+.+|.+++|.|+.+||..++
T Consensus 37 ~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 37 ESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 344567888999999999999999998764
No 67
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.0081 Score=48.74 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=61.9
Q ss_pred hhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcc
Q 032342 10 TVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSI 89 (142)
Q Consensus 10 ~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~I 89 (142)
.+.+-+.-..+..+.+..-|+.+-+|..|.|+-.--+.++.+. . +...++.- ||...|.+.||.+
T Consensus 218 ~~d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS-------k----lpi~ELsh----IWeLsD~d~DGAL 282 (737)
T KOG1955|consen 218 ELDTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS-------K----LPIEELSH----IWELSDVDRDGAL 282 (737)
T ss_pred ccCCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc-------c----CchHHHHH----HHhhcccCccccc
Confidence 3444444455556667888999999999999999999988876 3 66777776 9999999999999
Q ss_pred cHHHHHHHHHHH
Q 032342 90 DLHEFSAEMKKI 101 (142)
Q Consensus 90 s~~EF~~~l~~~ 101 (142)
++.|||..+.-.
T Consensus 283 tL~EFcAAfHLV 294 (737)
T KOG1955|consen 283 TLSEFCAAFHLV 294 (737)
T ss_pred cHHHHHhhHhhe
Confidence 999999998643
No 68
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.23 E-value=0.023 Score=34.94 Aligned_cols=63 Identities=24% Similarity=0.397 Sum_probs=47.6
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLD----SSGSIDLHEFSAEMK 99 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~----~~g~Is~~EF~~~l~ 99 (142)
+..+|+.|-. +.+.++.++|..++... ......+.+++.. ++..+..+ ..+.+++++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~e-------Q~~~~~~~~~~~~----li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREE-------QGEPRLTDEQAKE----LIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHT-------SS-TTSSHHHHHH----HHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHH-------hccccCcHHHHHH----HHHHHccchhhcccCCcCHHHHHHHHC
Confidence 6789999966 78999999999999865 2222467888877 55555433 468999999999985
No 69
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.17 E-value=0.03 Score=35.41 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHh
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIET 57 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~ 57 (142)
...+..+|..+|.+++|.|+.++|..++........
T Consensus 43 ~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 43 QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 356889999999999999999999999987765544
No 70
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.02 E-value=0.021 Score=36.03 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMR 53 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~ 53 (142)
..+..+++.+|.|+||.|+++||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999999998773
No 71
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.99 E-value=0.04 Score=44.36 Aligned_cols=88 Identities=27% Similarity=0.379 Sum_probs=60.4
Q ss_pred eeeCh-hhHHHHhhHHHHH-----HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 032342 5 IIDGS-TVRDFVNEEEQFK-----KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIF 78 (142)
Q Consensus 5 ~~d~~-~~~~f~~~~~~~~-----~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 78 (142)
..+|. .+.+|+-|.-+.+ ..++=+|+.+|-+++|.|+..|++-+.+........+|.. .++-+.+ ...++
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e-~l~fed~---l~qi~ 402 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQE-ALPFEDA---LCQIR 402 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCC-cccHHHH---HHHHH
Confidence 34443 5566665544444 2477799999999999999999998887654444444533 2444333 23477
Q ss_pred HhcCCCCCCcccHHHHHH
Q 032342 79 EKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 79 ~~~d~~~~g~Is~~EF~~ 96 (142)
..+-+...+.|++.+|+.
T Consensus 403 DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 403 DMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHhCccCCCceeHHHHhh
Confidence 777777788999999987
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.79 E-value=0.044 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
..+..+++.+|.|++|.|+++||..++..+
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 568899999999999999999999998876
No 73
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.53 E-value=0.02 Score=37.86 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFE 50 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~ 50 (142)
...+..+|+.+|.|+||.||.+|+..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45678899999999999999999999983
No 74
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.027 Score=45.04 Aligned_cols=29 Identities=34% Similarity=0.553 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 032342 76 SIFEKFDLDSSGSIDLHEFSAEMKKIMLA 104 (142)
Q Consensus 76 ~l~~~~d~~~~g~Is~~EF~~~l~~~~~~ 104 (142)
-+|..+|.|+||.++.+||...+.+.+..
T Consensus 429 vvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 429 VVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred eEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 38999999999999999999999886654
No 75
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.39 E-value=0.27 Score=31.03 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
.++++-+|+.+ .|++|.++...|...++.+......+|.. .+-..++..+..+|+.. .....|+.++|..-+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~--~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEG--PAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-G--GGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcc--ccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 56788899988 78899999999999999887777766644 22222555666699987 3556899999998775
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.21 E-value=0.079 Score=30.58 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
...+..+|+.+|.+++|.|+.++|..++..+
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4568899999999999999999999888765
No 77
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.21 E-value=0.11 Score=32.09 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
...+..++..+|.+++|.|+.++|..++...
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678899999999999999999999988765
No 78
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.16 E-value=0.036 Score=45.16 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhHHHHhhHH------HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 10 TVRDFVNEEE------QFKKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 10 ~~~~f~~~~~------~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
++++|.+|.. .++......|+.||+.++|.++.+++..++..+
T Consensus 89 glisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 89 GLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 4666666533 556778899999999999999999999999876
No 79
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.13 E-value=0.051 Score=34.34 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMR 53 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~ 53 (142)
..+..+++.+|.|++|.|+++||..++..++
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999998773
No 80
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.85 E-value=0.021 Score=44.17 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
+.+.|..+|+|+++.|...|++-+=+-+. ....+.+-...+++.+|.|+|..|+++||...|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~------------k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLL------------KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHH------------hhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 56679999999999999998654433220 01111222335999999999999999999998864
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.81 E-value=0.1 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIE 56 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~ 56 (142)
...+..+|+.+|.+++|.|+.++|..++..+..++
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999998775443
No 82
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.77 E-value=0.034 Score=36.11 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=35.1
Q ss_pred eChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 032342 7 DGSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRL 54 (142)
Q Consensus 7 d~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~ 54 (142)
.|.....|.....-..+.+..+|...|.+++|+++.+||..++.-++.
T Consensus 27 sg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 27 SGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp EHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 344444444433334467999999999999999999999999987754
No 83
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.61 E-value=0.11 Score=32.47 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
...+..+|+.+|.+++|.|++++|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5679999999999999999999999988866
No 84
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.59 E-value=0.12 Score=32.44 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
+.+..+++.+|.+++|.|+++||..++..+
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 568889999999999999999999888876
No 85
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.57 E-value=0.098 Score=28.86 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAF 49 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l 49 (142)
..+..+|+.+|.+++|.|+.++|..++
T Consensus 36 ~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 36 EEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 457789999999999999999998765
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.33 E-value=0.077 Score=42.27 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=34.9
Q ss_pred eeChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 032342 6 IDGSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRL 54 (142)
Q Consensus 6 ~d~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~ 54 (142)
.||.+.++.-++.. +..+|+.+|.|++|.|+.+||..++...++
T Consensus 345 ~dgdG~Is~~E~~~-----~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 345 LDGDGFITREEWLG-----SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred CCCCCcCcHHHHHH-----HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 45666666665532 578999999999999999999999987643
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.26 E-value=0.16 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMR 53 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~ 53 (142)
.+..+++.+|.|+||.|+.+||..++..+.
T Consensus 49 ~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 49 AVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 488899999999999999999999998763
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.26 E-value=0.11 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
..+..+|+..|+.++|.+..+||..+.+.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 457789999999999999999999988754
No 89
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.08 E-value=0.1 Score=40.73 Aligned_cols=63 Identities=29% Similarity=0.319 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
.....+.++|..+|.|.||.++..|+..+-.. .. +.-++.+|..+|...||.|+-.||+-...
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---------------kn--E~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---------------KN--EACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc---------------Cc--hhHHHHHHhhhcccccCccccchhhhhhc
Confidence 34567899999999999999999999865432 11 12234599999999999999999998764
No 90
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.08 E-value=0.17 Score=34.93 Aligned_cols=62 Identities=18% Similarity=0.359 Sum_probs=45.2
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 28 IFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 28 ~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
+...|-.++.|.++.++|..++.-+ . ...+.++.. .-.|+.+|-|+++.|..+++.+.+..+
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~-------s---E~APrdlK~--~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVF-------S---EMAPRDLKA--KYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHH-------H---hhChHHhhh--hheeEEeecCCCCcccHHHHHHHHHHH
Confidence 3344457999999999999999865 1 133333321 237889999999999999988888654
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.03 E-value=0.27 Score=39.74 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=48.4
Q ss_pred HHHHHHh----hCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 25 VEEIFAA----LDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 25 l~~~F~~----~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
+.++|+. +-...+|.+++++|..++-+. ...-++.-++ -+|+-+|.+++|.++..|..-++..
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~---------e~k~t~~Sle----YwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE---------EDKDTPASLE----YWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHh---------ccCCCccchh----hheeeeeccCCCcccHHHHHHHHHH
Confidence 5555552 223345666666666655543 1112232233 3899999999999999998888877
Q ss_pred HHHHHhc-ccCCCChhhhc
Q 032342 101 IMLAIAD-GLGSCPIQMAL 118 (142)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~ 118 (142)
....+.. +...++++++.
T Consensus 380 q~~rm~~~~~e~l~fed~l 398 (493)
T KOG2562|consen 380 QLQRMECMGQEALPFEDAL 398 (493)
T ss_pred HHHHHHhcCCCcccHHHHH
Confidence 7666533 34445554443
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.18 Score=43.31 Aligned_cols=64 Identities=33% Similarity=0.507 Sum_probs=54.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
.++..+|+.+|+...|+++...-+.++... + ++..++.. ||-.-|.|+||.++-+||.-.|.-+
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS-------~----Lpq~~LA~----IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQS-------G----LPQNQLAH----IWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhc-------C----CchhhHhh----heeeeccCCCCcccHHHHHHHHHHH
Confidence 468889999999999999999999888766 5 44666655 9999999999999999999887533
No 93
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.45 E-value=0.18 Score=31.65 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
..+..+++.+|.+++|.|+.++|..++...
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 468899999999999999999999988765
No 94
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.44 E-value=0.78 Score=32.45 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHH---------HHHH----------HhcccCCCChhhhccccchHHHHH
Q 032342 74 YDSIFEKFDLDSSGSIDLHEFSAEMKK---------IMLA----------IADGLGSCPIQMALEDDDQNFLKK 128 (142)
Q Consensus 74 ~~~l~~~~d~~~~g~Is~~EF~~~l~~---------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 128 (142)
++.+|..++..+.+.+++.|...++.. +... +.+.+|....+.++..-||++..+
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYDGSlF~~ 171 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYDGSLFYK 171 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcchHHHHH
Confidence 455999999988899999999999875 1111 245678888888888777776644
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=93.32 E-value=0.21 Score=31.24 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
..+..+++.+|+|++|.|++++|..++..+
T Consensus 51 ~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 51 EVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 458899999999999999999999988866
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.49 E-value=0.5 Score=35.45 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=64.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI- 101 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~- 101 (142)
..++.+...||+|+|..++..+|....-...... -|. .+...++......+-...|.|.+|.++++|+..++...
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenq--qgq--diddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n 311 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQ--QGQ--DIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN 311 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhh--hcc--chHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh
Confidence 4467788999999999999999987553221100 022 25555666666667788999999999999998886432
Q ss_pred ------------HHHHhcccCCCChhhhccc
Q 032342 102 ------------MLAIADGLGSCPIQMALED 120 (142)
Q Consensus 102 ------------~~~~~~~~~~~~~~~~~~~ 120 (142)
.....++...++.+.+.+.
T Consensus 312 ~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 312 FRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred hhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 1223455566777777765
No 97
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.89 E-value=0.42 Score=43.88 Aligned_cols=59 Identities=17% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 28 IFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 28 ~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
.|+.||+|+.|.|+..+|..+++.- . +.++.+..- ++.-...+.+...+|++|+.-...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~---------k-~ytqse~df----llscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH---------K-HYTQSEIDF----LLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc---------c-cchhHHHHH----HHHhhccCccccccHHHHHHHhcC
Confidence 5999999999999999999999843 2 467777665 666777888899999999987654
No 98
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.82 E-value=0.86 Score=39.85 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 18 EEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 18 ~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
.++...+++.+|+.+++...|.++.+++..++..+ |.. ....++..+-|..+....|.+.-|.+++.+|...
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-------g~~-~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSL-------GYN-TEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-------Ccc-cchhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 44667789999999999999999999999999988 754 2233566676777888888888899999999999
Q ss_pred HHHHHH
Q 032342 98 MKKIML 103 (142)
Q Consensus 98 l~~~~~ 103 (142)
+.+-..
T Consensus 814 l~R~~e 819 (890)
T KOG0035|consen 814 LEREYE 819 (890)
T ss_pred hhhhhh
Confidence 876443
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=91.34 E-value=0.34 Score=37.71 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..++-.|++|+.+-||.+...+|..++... +|++ .-.+ ..+|+..+...+++|++++|..++..
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~------lgv~----~l~v----~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVV------LGVE----VLRV----PVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh------cCcc----eeec----cccchhhhcccCcceeHHHHHHHHHh
Confidence 447778888888888888888888777754 1443 1111 22899999999999999999998754
No 100
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.82 E-value=2.3 Score=29.39 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=47.0
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 032342 28 IFAALDLNNDGVLSRSELRKAFESMRLIETHFGV-DVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIMLAI 105 (142)
Q Consensus 28 ~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~-~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~~~ 105 (142)
.|..|-..+...++...|..+++.+ ++ +..++...+.- +|..+-..+...|+|++|..+|..+....
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~-------~i~d~k~t~tdvDi----iF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDC-------GIIDKKLTSTDVDI----IFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHT-------SS--SSS-HHHHHH----HHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHc-------CCCCCCCchHHHHH----HHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 3444445556678999999999977 54 23467777766 88887766677899999999998776653
No 101
>PF14658 EF-hand_9: EF-hand domain
Probab=90.36 E-value=0.64 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhCCCCC-CccCHHHHHHHHHH
Q 032342 21 FKKSVEEIFAALDLNND-GVLSRSELRKAFES 51 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~d-G~Is~~el~~~l~~ 51 (142)
.+..++.+.+.+|+++. |.|+.++|..+++.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34579999999999998 99999999998874
No 102
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.35 E-value=2.3 Score=27.28 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIM 102 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~ 102 (142)
.++.-|..+-. +|+++.++|..+|. +. -+++-+.++++.+-+.-... .+.|+.+|+..+...+.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIG----------M~--dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIG----------MK--DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT--------------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcC----------Cc--ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhh
Confidence 45566776666 99999999998884 32 46777777666676665555 57899999888876653
No 103
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=89.32 E-value=1.3 Score=38.01 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
....++..+|+..|++.+|.++..+...++..+ +. .+....+.. +|+..+..+++.+...+|.....
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-------n~--~l~~~~~~~----~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-------NV--QLSESKARR----LFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH-------HH--hhhHHHHHH----HHHHHHhhccceehHHHHHHHHH
Confidence 344568899999999999999999999999876 32 244555555 88888888899999999988875
Q ss_pred H
Q 032342 100 K 100 (142)
Q Consensus 100 ~ 100 (142)
.
T Consensus 200 ~ 200 (746)
T KOG0169|consen 200 E 200 (746)
T ss_pred h
Confidence 4
No 104
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.22 E-value=3.7 Score=34.48 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
.....+.++|+..|.|+||.++-.|+...=+.
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~ 223 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKK 223 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHH
Confidence 45677999999999999999998887665443
No 105
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.15 E-value=1.4 Score=34.13 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHH------HHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 26 EEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPE------QLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 26 ~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~------~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
+..|...|.|+||.++-.++...+..-. -+... |.....+ +....-+.+++.+|.|.|..|+++||.+.-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkEL--EKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKEL--EKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHH--HHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3468888999999999999988775421 11111 1111111 1123346699999999999999999998765
Q ss_pred H
Q 032342 100 K 100 (142)
Q Consensus 100 ~ 100 (142)
.
T Consensus 324 ~ 324 (442)
T KOG3866|consen 324 N 324 (442)
T ss_pred h
Confidence 4
No 106
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.66 E-value=1.1 Score=37.52 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
....-|..+|.++.|+++.+++..+++.. +.. .+.+.+.+ +.+..|.+-+|.+...||.+++..+-.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-------~~~--~d~~~~~~----~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE-------NVG--WDEDRLHE----ELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh-------cCC--CCHHHHHH----HHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 35567999999999999999999999876 432 56665555 888888888999999999999876544
Q ss_pred HH
Q 032342 104 AI 105 (142)
Q Consensus 104 ~~ 105 (142)
.+
T Consensus 661 g~ 662 (680)
T KOG0042|consen 661 GC 662 (680)
T ss_pred CC
Confidence 33
No 107
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.76 E-value=4.1 Score=27.29 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCC--CCccCHHHHHHHHHHHHH-HHhhhCCCCCCC----HHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 25 VEEIFAALDLNN--DGVLSRSELRKAFESMRL-IETHFGVDVATP----PEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 25 l~~~F~~~D~~~--dG~Is~~el~~~l~~~~~-~~~~~g~~~~~~----~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
+.++|+...-+. +..++..++..++..+|. ..+..+.-..++ +..+.-.+..++..+|.+++|.|+.-.|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 456777766433 567999999999999984 555444321111 2344555677999999999999999999887
Q ss_pred HH
Q 032342 98 MK 99 (142)
Q Consensus 98 l~ 99 (142)
+.
T Consensus 123 L~ 124 (127)
T PF09068_consen 123 LI 124 (127)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 108
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.58 E-value=2.1 Score=30.35 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
-++++.+|+.|++.+.+.+|..|+..+++.-....+.+|+- ...-| |..++..+ .+++|.+..+.-...+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~--a~~~E----W~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWF--AAFFE----WGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhh--hhhhH----HHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 46789999999999999999999999998643333444432 11111 22244443 46688999888777664
No 109
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=85.91 E-value=0.35 Score=31.78 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=28.3
Q ss_pred eeChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHH
Q 032342 6 IDGSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRK 47 (142)
Q Consensus 6 ~d~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~ 47 (142)
++.+.+..+...+.....-+...|+..|.|+||.||..|...
T Consensus 71 L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 71 LDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp E-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445555555554444455578899999999999999999864
No 110
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=85.88 E-value=1 Score=32.76 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 032342 74 YDSIFEKFDLDSSGSIDLHEFSAEMKKIM 102 (142)
Q Consensus 74 ~~~l~~~~d~~~~g~Is~~EF~~~l~~~~ 102 (142)
+..+|+.+|.+.||.|++.|+.-+|.+++
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg 129 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLG 129 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhC
Confidence 55699999999999999999999997654
No 111
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=0.81 Score=37.61 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=38.8
Q ss_pred eChhhHHHHhhHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 7 DGSTVRDFVNEEEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 7 d~~~~~~f~~~~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
-|+.-++|++...-...+|..+|...|.++||.++..||+.++...
T Consensus 249 sGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 249 SGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 3566677877766677889999999999999999999999988754
No 112
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.17 E-value=2.4 Score=33.11 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIM 102 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~ 102 (142)
.++...|..||.+++|.+++.+....+.-+. | | ..+..-+.- -|+.++.+.||.+.-.+|.-+++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc------~-p-~~t~~iiq~----afk~f~v~eDg~~ge~~ls~ilq~-- 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLC------G-P-PVTPVIIQY----AFKRFSVAEDGISGEHILSLILQV-- 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeee------C-C-CCcHHHHHH----HHHhcccccccccchHHHHHHHHH--
Confidence 5688899999999999999888766655331 3 2 345554444 899999999999988777666653
Q ss_pred HHHhcccCCCChhhhcc
Q 032342 103 LAIADGLGSCPIQMALE 119 (142)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ 119 (142)
..|...+.+..+..
T Consensus 325 ---~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 325 ---VLGVEVLRVPVLFP 338 (412)
T ss_pred ---hcCcceeeccccch
Confidence 44444444444443
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=82.94 E-value=17 Score=30.84 Aligned_cols=82 Identities=12% Similarity=0.295 Sum_probs=53.0
Q ss_pred hhHHHHhhHHHHH-------HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcC
Q 032342 10 TVRDFVNEEEQFK-------KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFD 82 (142)
Q Consensus 10 ~~~~f~~~~~~~~-------~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d 82 (142)
++..|..|...+. ..+..+|..|-.++ +.++.++|..++.... + ....+.+++...++.++....
T Consensus 18 ~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q------~-e~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 18 NYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ------D-ELDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred CHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC------C-CcCCCHHHHHHHHHHHHhhcc
Confidence 3555555545443 47899999996544 6899999999999772 2 223566666664444443322
Q ss_pred ---CCCCCcccHHHHHHHHH
Q 032342 83 ---LDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 83 ---~~~~g~Is~~EF~~~l~ 99 (142)
..+...++++.|..+|.
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccccCcCHHHHHHHHc
Confidence 12234689999999885
No 114
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=82.54 E-value=5.7 Score=32.89 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=36.1
Q ss_pred HhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 30 AALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 30 ~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
...|.-+||.|+.+||+.+=.-+ ..++. ...-.|..+|+.++|.++++++......
T Consensus 81 ~iaD~tKDglisf~eF~afe~~l------------C~pDa---l~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVL------------CAPDA---LFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhc------------cCchH---HHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 35577889999999998643322 11221 1223777778887777777777776654
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.85 E-value=11 Score=33.00 Aligned_cols=57 Identities=32% Similarity=0.512 Sum_probs=45.3
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 032342 34 LNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIMLAI 105 (142)
Q Consensus 34 ~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~~~ 105 (142)
+.+.|+|+-..-+.++-.. |+| ..-+.+ ||...|.|+||+++..||.-+|+-+...+
T Consensus 26 kp~~gfitg~qArnfflqS-------~LP----~~VLaq----IWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 26 KPGQGFITGDQARNFFLQS-------GLP----TPVLAQ----IWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCCCCccchHhhhhhHHhc-------CCC----hHHHHH----HHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 3578999999999988877 765 332334 99999999999999999999997655543
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.43 E-value=0.81 Score=40.11 Aligned_cols=66 Identities=26% Similarity=0.478 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
.+..+|...|.+++|.|+..+....+... |+ ....+.. +|...|..+.|.+++.+|+-.+..+..
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~~-------gl----~~~~l~~----~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLPF-------GL----SKPRLAH----VWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHHHHhccccCCCcccccccccccccC-------CC----Chhhhhh----hhhhcchhccCcccccccchhhhhhhh
Confidence 45558999999999999999998887765 64 4554554 999999999999999999888865544
Q ss_pred H
Q 032342 104 A 104 (142)
Q Consensus 104 ~ 104 (142)
.
T Consensus 349 ~ 349 (847)
T KOG0998|consen 349 K 349 (847)
T ss_pred h
Confidence 4
No 117
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.90 E-value=7.8 Score=33.11 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 18 EEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 18 ~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
..+++.+++.+|.++|. .+|.++.+++..++.....++. .. ........+...++...|.++.|.+.++.+..+
T Consensus 13 ~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l 86 (646)
T KOG0039|consen 13 DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LS----LIKKQTEEYAALIMEELDPDHKGYITNEDLEIL 86 (646)
T ss_pred CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hh----hhhhhhhHHHHHhhhhccccccceeeecchhHH
Confidence 34677889999999999 9999999999999987765554 32 233444455556999999999999888888887
Q ss_pred HHHH
Q 032342 98 MKKI 101 (142)
Q Consensus 98 l~~~ 101 (142)
+...
T Consensus 87 l~~~ 90 (646)
T KOG0039|consen 87 LLQI 90 (646)
T ss_pred HHhc
Confidence 7643
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=74.51 E-value=6.5 Score=33.37 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEF 94 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF 94 (142)
.+.++|..+|.+.+|.|+..++...+..+. ..++.+.+.-+|+.+|.+++ ..+.+|-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-------------~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILK-------------AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHH-------------hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 378899999999999999999999888662 11112223348888888887 6666654
No 119
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.71 E-value=13 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=36.1
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcc
Q 032342 36 NDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSI 89 (142)
Q Consensus 36 ~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~I 89 (142)
..|.||.+|-+++|. ..+.+..+++.+.++.+|+--|+...|..
T Consensus 52 ~~~~iTlqEa~qILn----------V~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 52 SNGKITLQEAQQILN----------VKEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccccHHHHhhHhC----------CCCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 357899999888874 33468899999999999999999987765
No 120
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.36 E-value=8.3 Score=17.45 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=13.6
Q ss_pred CCCCCCccCHHHHHHHHH
Q 032342 33 DLNNDGVLSRSELRKAFE 50 (142)
Q Consensus 33 D~~~dG~Is~~el~~~l~ 50 (142)
|-|+||.|+.-++..+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 568999999988876544
No 121
>PLN02952 phosphoinositide phospholipase C
Probab=69.94 E-value=19 Score=30.53 Aligned_cols=53 Identities=15% Similarity=0.330 Sum_probs=38.7
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 36 NDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 36 ~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
+.|.+++++|..+++.+ .........++.. +|..+-.+ .+.++.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~~~-------k~~~~~~r~ei~~----lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF-------KITEAEPPDDVKD----VFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHh-------ccccCCChHHHHH----HHHHHhCC-CCccCHHHHHHHHHH
Confidence 46899999998888866 2211235677777 88888544 368999999998864
No 122
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.50 E-value=7.1 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKA 48 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~ 48 (142)
+++..+..+.+.-|.|+||+|++.||...
T Consensus 114 Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 114 ELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45556777888889999999999998753
No 123
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=68.95 E-value=1.9 Score=31.33 Aligned_cols=56 Identities=34% Similarity=0.457 Sum_probs=37.5
Q ss_pred HHhhCC-CCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 29 FAALDL-NNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 29 F~~~D~-~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
|-.+|. ..||++|..|+.-+-.-+ ++.+ .-+.++|..+|.|+|+.|+.+||...+.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~------------ipme---~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL------------IPME---HCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCc------------ccHH---hhchhhhhcccCCCCCceeHHHhhcccC
Confidence 566665 358888888876322111 2222 1223599999999999999999987663
No 124
>PLN02228 Phosphoinositide phospholipase C
Probab=67.93 E-value=40 Score=28.49 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCC----CCCcccHHHHHH
Q 032342 21 FKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLD----SSGSIDLHEFSA 96 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~----~~g~Is~~EF~~ 96 (142)
.-..+..+|..|-.+ +.++.++|..++.... + ....+.+.+.. ++..+... ..|.++.+.|..
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q------~-~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~gF~~ 88 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQ------G-ERHAGLDYVQD----IFHSVKHHNVFHHHGLVHLNAFYR 88 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhc------C-CccCCHHHHHH----HHHHhccchhhcccCccCHHHHHH
Confidence 345688899888643 5899999999998762 2 11234444544 77666543 246799999999
Q ss_pred HHHH
Q 032342 97 EMKK 100 (142)
Q Consensus 97 ~l~~ 100 (142)
+|..
T Consensus 89 yl~s 92 (567)
T PLN02228 89 YLFS 92 (567)
T ss_pred HhcC
Confidence 9853
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=67.65 E-value=46 Score=28.36 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcC---CCCCCcccHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFD---LDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d---~~~~g~Is~~EF~~~l~ 99 (142)
..+..+|..|-.++ +.++.++|..++.... +.+...+.+.+...+..+.+... .-..+.++++.|..+|.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEG------GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhC------CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 56889999996544 7999999999998762 12223456666664444433322 12345699999999885
Q ss_pred H
Q 032342 100 K 100 (142)
Q Consensus 100 ~ 100 (142)
.
T Consensus 102 s 102 (598)
T PLN02230 102 S 102 (598)
T ss_pred C
Confidence 3
No 126
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.29 E-value=14 Score=22.14 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred cCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 40 LSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 40 Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
++...|-.++... +++..... +...|+.=..+.|+.+||+..++.+..
T Consensus 9 ~~F~~L~~~l~~~------------l~~~~~~~----l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 9 MPFPMLFSALSKH------------LPPSKMDL----LQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred ccHHHHHHHHHHH------------CCHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4555555555543 55555554 555665556789999999999987643
No 127
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=65.58 E-value=22 Score=22.22 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=34.3
Q ss_pred CCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 36 NDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 36 ~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
.||.++..|...+-..+ ...++ ++..+... +...+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l---~~~~~----l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLL---AERFG----LDAEEAAE----LLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHH---HHHhC----cCHHHHHH----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 48999999987766654 22235 45666655 555554444556778888777654
No 128
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=65.53 E-value=8.1 Score=26.35 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=28.5
Q ss_pred CCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCC-------CCCcccHHHHHHHHHHHHHH
Q 032342 37 DGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLD-------SSGSIDLHEFSAEMKKIMLA 104 (142)
Q Consensus 37 dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~-------~~g~Is~~EF~~~l~~~~~~ 104 (142)
-+.|+..||.+.-+-+ . -+...+.. +++.+..+ ..+.|+|+.|...|..++..
T Consensus 5 ~~~lsp~eF~qLq~y~-------e----ys~kklkd----vl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~ 64 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS-------E----YSTKKLKD----VLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV 64 (138)
T ss_dssp -S-S-HHHHHHHHHHH-------H----H----HHH----HHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-
T ss_pred eeccCHHHHHHHHHHH-------H----HHHHHHHH----HHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC
Confidence 3678888888876644 1 12223444 44444322 24589999999999876543
No 129
>PLN02222 phosphoinositide phospholipase C 2
Probab=63.63 E-value=45 Score=28.29 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHH
Q 032342 22 KKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDL-DSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 22 ~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~-~~~g~Is~~EF~~~l~~ 100 (142)
-..+..+|..|-. ++.++.++|..++.... + ....+.+.+.. ++..+.. ...+.++++.|..+|..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q------~-~~~~~~~~~~~----ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQ------K-QDKATREDAQS----IINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhc------C-CccCCHHHHHH----HHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3468889998864 47999999999998772 2 22345666665 5554421 23567999999999853
No 130
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=61.67 E-value=25 Score=33.38 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEM 98 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l 98 (142)
.++.+....||+.+|+|+..+...++-+- -...-.+.++++. .|+.++. +..+|+..+..+.|
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~-------ETeNI~s~~eIE~----AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISK-------ETENILSSEEIED----AFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhc-------ccccccchHHHHH----HHHHhhc-CCccccHHHHHhcC
Confidence 67888999999999999999988766432 1112255666666 8888888 56678777764444
No 131
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=59.59 E-value=12 Score=31.69 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 032342 19 EQFKKSVEEIFAALDLNNDGVLSRSELRKAFESM 52 (142)
Q Consensus 19 ~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~ 52 (142)
....+.+..+|..||.|+||.++..|+...+..+
T Consensus 311 ~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 311 PKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 3445668999999999999999999999999876
No 132
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=58.65 E-value=13 Score=22.27 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFE 50 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~ 50 (142)
+.+...|+.+ .++.++||..+|++.+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 4577889999 77889999999997764
No 133
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=56.54 E-value=13 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 65 TPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 65 ~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
+++++++. ++..+=.|..|.+.|.||..-+.
T Consensus 4 LtDeQFdr----LW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDR----LWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHH----HHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhh----hhhhCcCCccCCEeHHHHHHHcc
Confidence 67888877 88889999999999999998775
No 134
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=55.66 E-value=28 Score=27.27 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHH-------------HHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 032342 63 VATPPEQLTKLYDS-------------IFEKFDLDSSGSIDLHEFSAEMKKIMLA 104 (142)
Q Consensus 63 ~~~~~~~~~~~~~~-------------l~~~~d~~~~g~Is~~EF~~~l~~~~~~ 104 (142)
...+.+++.++|+. +|...|.|+||.++-.|+.++...-+..
T Consensus 222 hPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEK 276 (442)
T KOG3866|consen 222 HPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEK 276 (442)
T ss_pred CCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHH
Confidence 34788899998865 8899999999999999999988665444
No 135
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.54 E-value=19 Score=24.08 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 21 FKKSVEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
.+-.+.++...||++++|.|+.-.++.++..
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3445888999999999999999999887653
No 136
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=55.26 E-value=38 Score=29.03 Aligned_cols=31 Identities=10% Similarity=0.316 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 032342 74 YDSIFEKFDLDSSGSIDLHEFSAEMKKIMLA 104 (142)
Q Consensus 74 ~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~~ 104 (142)
..++|+.+|.+.+|.+++.+|+..+..+...
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~ 587 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAG 587 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhh
Confidence 4669999999999999999999999876544
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=53.78 E-value=54 Score=22.36 Aligned_cols=65 Identities=14% Similarity=0.298 Sum_probs=34.8
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHhhC-------CCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhc
Q 032342 9 STVRDFVNEEEQFKKSVEEIFAALD-------LNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKF 81 (142)
Q Consensus 9 ~~~~~f~~~~~~~~~~l~~~F~~~D-------~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 81 (142)
..+..+.++.+.-..+++.+.+.|. -+..+.|+++.|+.+++.. +... .++ .++.++|..+
T Consensus 11 ~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y--------Le~d-~P~---~lc~hLF~sF 78 (138)
T PF14513_consen 11 EEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY--------LEVD-LPE---DLCQHLFLSF 78 (138)
T ss_dssp HHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH--------TT-S---H---HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH--------HcCC-CCH---HHHHHHHHHH
Confidence 3455555555555667777777663 2455689999999999976 2222 233 3455788888
Q ss_pred CCCC
Q 032342 82 DLDS 85 (142)
Q Consensus 82 d~~~ 85 (142)
-...
T Consensus 79 ~~~~ 82 (138)
T PF14513_consen 79 QKKP 82 (138)
T ss_dssp ----
T ss_pred hCcc
Confidence 6554
No 138
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=53.49 E-value=29 Score=17.48 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=19.4
Q ss_pred ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 032342 39 VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKL 73 (142)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 73 (142)
.++..|++..++.. |++...+..++.+.
T Consensus 3 ~l~v~eLk~~l~~~-------gL~~~G~K~~Li~R 30 (35)
T PF02037_consen 3 KLTVAELKEELKER-------GLSTSGKKAELIER 30 (35)
T ss_dssp TSHHHHHHHHHHHT-------TS-STSSHHHHHHH
T ss_pred cCcHHHHHHHHHHC-------CCCCCCCHHHHHHH
Confidence 35677888888877 88877777776553
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=53.16 E-value=95 Score=28.03 Aligned_cols=86 Identities=16% Similarity=0.316 Sum_probs=62.1
Q ss_pred ChhhHHHHhhHHHHH--HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH---HHhhhCCCCCCCHHHHHHHHHHHHHhcC
Q 032342 8 GSTVRDFVNEEEQFK--KSVEEIFAALDLNNDGVLSRSELRKAFESMRL---IETHFGVDVATPPEQLTKLYDSIFEKFD 82 (142)
Q Consensus 8 ~~~~~~f~~~~~~~~--~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~---~~~~~g~~~~~~~~~~~~~~~~l~~~~d 82 (142)
-.++..|..++..+- ..+..+|..+-.+..-++|.++|..++....+ .+..+ . +...+.++.. +...+.
T Consensus 204 ~f~~e~f~~~l~klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeil-f-p~~~~~r~~~----liekyE 277 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEIL-F-PPADPRRIQS----LIEKYE 277 (1189)
T ss_pred hccHHHHHHHHHhcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhh-c-CCCCHHHHHH----HHHHcC
Confidence 346667777766554 46899999999998899999999999976533 11111 1 2466777766 777777
Q ss_pred CCC----CCcccHHHHHHHHH
Q 032342 83 LDS----SGSIDLHEFSAEMK 99 (142)
Q Consensus 83 ~~~----~g~Is~~EF~~~l~ 99 (142)
.++ .|.++-+.|+.++.
T Consensus 278 p~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 278 PNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred CchhhhhccccchhhhHHHhh
Confidence 665 58899999998874
No 140
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.10 E-value=13 Score=32.92 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=53.0
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 032342 24 SVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKIML 103 (142)
Q Consensus 24 ~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~~~ 103 (142)
....+|+.+|...+|.|+..+...++... |++ ..-+-+ +|...|..+.|..+..+|...++....
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s-------~L~----~qvl~q----iws~~d~~~~g~l~~q~f~~~lrlva~ 76 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKS-------GLP----DQVLGQ----IWSLADSSGKGFLNRQGFYAALRLVAQ 76 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhcc-------ccc----hhhhhc----cccccccccCCccccccccccchHhhh
Confidence 46778999999999999999999988876 654 333334 888999999999999999999976543
No 141
>PLN02223 phosphoinositide phospholipase C
Probab=47.31 E-value=1.6e+02 Score=24.89 Aligned_cols=73 Identities=7% Similarity=-0.006 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcC----CCCCCcccHHHHHHHH
Q 032342 23 KSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFD----LDSSGSIDLHEFSAEM 98 (142)
Q Consensus 23 ~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d----~~~~g~Is~~EF~~~l 98 (142)
..+..+|..|- .+.|..+.+.+.+++..+.... | ....+.+++...++.++.... ....+.++.+.|..+|
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q---~-e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEK---D-EDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhc---c-cccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 45788898884 6678899999999884331111 2 234677778887777665542 1223569999999998
Q ss_pred HH
Q 032342 99 KK 100 (142)
Q Consensus 99 ~~ 100 (142)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 53
No 142
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.91 E-value=28 Score=28.19 Aligned_cols=56 Identities=27% Similarity=0.417 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 26 EEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 26 ~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
..+|..+-+ -+|+|+-..-+..+-.. .+| .. ++-++|+..|.+.||.++-+||.-+
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv~s-------klp----ns----vlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMVKS-------KLP----NS----VLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHHhc-------cCc----hh----HHHhhhhhhcCCcccCcCHHHHHHH
Confidence 345544433 36777766555544433 332 32 3334999999999999999999644
No 143
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=46.75 E-value=38 Score=16.86 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 032342 86 SGSIDLHEFSAEMKKIMLA 104 (142)
Q Consensus 86 ~g~Is~~EF~~~l~~~~~~ 104 (142)
.|.|+++|+..+..+...-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 5789999999998775443
No 144
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=45.96 E-value=37 Score=26.96 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 18 EEQFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVD-VATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 18 ~~~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
+..+-..|..+|+.+-.+..+......+...-..+ ... ..+-..++ -.||..+|.|.|+.++..|...
T Consensus 206 L~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~-------d~s~~p~CKds~----gWMFnklD~N~Dl~Ld~sEl~~ 274 (434)
T KOG3555|consen 206 LRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGF-------DTSILPICKDSL----GWMFNKLDTNYDLLLDQSELRA 274 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcchhhccccccc-------ccccCcchhhhh----hhhhhccccccccccCHHHhhh
Confidence 44566778889998877666655554444432221 110 01334443 3499999999999999999988
Q ss_pred HHHH
Q 032342 97 EMKK 100 (142)
Q Consensus 97 ~l~~ 100 (142)
+...
T Consensus 275 I~ld 278 (434)
T KOG3555|consen 275 IELD 278 (434)
T ss_pred hhcc
Confidence 8754
No 145
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=44.18 E-value=1.8e+02 Score=28.30 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.2
Q ss_pred HHHhcCCCCCCcccHHHHHHHHH
Q 032342 77 IFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 77 l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
-|+.+|+++.|-|+..+|.+.+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame 4084 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAME 4084 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHh
Confidence 68889999999999999999985
No 146
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=44.08 E-value=23 Score=27.92 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=34.0
Q ss_pred eeeChhhHHHHhhHH---HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 032342 5 IIDGSTVRDFVNEEE---QFKKSVEEIFAALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 5 ~~d~~~~~~f~~~~~---~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~ 51 (142)
.++....+-|..++. .+.+-.+.+|+..|-|+|.+|+..|+..+|..
T Consensus 349 ~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 349 DIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 345555555554433 44455778899999999999999999998864
No 147
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=42.87 E-value=61 Score=18.13 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=31.9
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHHH
Q 032342 57 THFGVDVATPPEQLTKLYDSIFEKFDLDSSGSID--LHEFSAEMKK 100 (142)
Q Consensus 57 ~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is--~~EF~~~l~~ 100 (142)
..+|++...+..++...+..+.+.+.++..+..+ .++....+..
T Consensus 4 ~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~ 49 (64)
T PF00226_consen 4 EILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINE 49 (64)
T ss_dssp HHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHH
Confidence 4468888889999999999999999988866555 3344444433
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.12 E-value=31 Score=27.65 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032342 21 FKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAE 97 (142)
Q Consensus 21 ~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~ 97 (142)
....+++.|+.+|+.++|+|+.+-++.++... +.. .++.+... -+-+.+|+.+-|.|=...|...
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-------N~~--vse~a~v~---l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-------NRL--VSEPAYVM---LMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh-------ccc--ccCHHHHH---HhcCccChhhcceEEecccccc
Confidence 35678999999999999999999999988876 422 33332221 1344455555555544444433
No 149
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=41.83 E-value=1.6e+02 Score=25.89 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 25 VEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 25 l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
+..+|..+-.+ .++++.+++..++... +-....+.+.+.+.++.+-..-.....+.++++.|..+|.
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~~~-------q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLEEE-------QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHh-------cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 33344443333 5556666666665544 2123355555555222221111122334466666666653
No 150
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=40.72 E-value=50 Score=16.46 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=20.0
Q ss_pred ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 032342 39 VLSRSELRKAFESMRLIETHFGVDVATPPEQLTK 72 (142)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~ 72 (142)
.++..+++..++.. |++...+..++.+
T Consensus 3 ~l~~~~Lk~~l~~~-------gl~~~G~K~~Lv~ 29 (35)
T smart00513 3 KLKVSELKDELKKR-------GLSTSGTKAELVD 29 (35)
T ss_pred cCcHHHHHHHHHHc-------CCCCCCCHHHHHH
Confidence 45778888888877 8887677776654
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=38.26 E-value=86 Score=18.53 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 032342 41 SRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKKI 101 (142)
Q Consensus 41 s~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~~ 101 (142)
+-+++..++... |.+ +++.++.. +++.-+..+--..+-..+..++..+
T Consensus 15 ~d~~m~~if~l~-------~~~--vs~~el~a----~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 15 KDDDMIEIFALA-------GFE--VSKAELSA----WLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred ChHHHHHHHHHc-------CCc--cCHHHHHH----HHCCCCCccccccChHHHHHHHHHH
Confidence 445666666654 554 78887777 7777555544445555555555443
No 152
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=36.62 E-value=92 Score=18.60 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.2
Q ss_pred CCCccCHHHHHHHHHHH
Q 032342 36 NDGVLSRSELRKAFESM 52 (142)
Q Consensus 36 ~dG~Is~~el~~~l~~~ 52 (142)
..|++..+||..++...
T Consensus 27 ~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 27 ASGKLRGEEINSLLEAL 43 (75)
T ss_pred HcCcccHHHHHHHHHHh
Confidence 47999999999988754
No 153
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=35.18 E-value=75 Score=16.95 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.3
Q ss_pred HHHHHHHhhC-C-CCCCccCHHHHHHHHHHH
Q 032342 24 SVEEIFAALD-L-NNDGVLSRSELRKAFESM 52 (142)
Q Consensus 24 ~l~~~F~~~D-~-~~dG~Is~~el~~~l~~~ 52 (142)
.+-.+|..|- + .....++..||+..+..-
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 4566788775 3 345689999999999853
No 154
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.65 E-value=1.2e+02 Score=20.89 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=38.7
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 27 EIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 27 ~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
-+|..... ||.++..|...+-.-+ ...|| ++..++.. +......-+...+++..|-.-+.+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il---~~~f~----i~~~~l~a----li~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAIL---KENFG----IDGEELDA----LIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHH---HHHcC----CCHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56776554 6677777765544433 23345 66777776 555555556677888888887763
No 155
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=33.37 E-value=1.2e+02 Score=20.34 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=25.0
Q ss_pred ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcc
Q 032342 39 VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSI 89 (142)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~I 89 (142)
.+|.+|-+.+| |++...+.+++.+.++.+|..-|++..|+.
T Consensus 54 ~Mtl~EA~~IL----------nv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf 94 (127)
T PF03656_consen 54 GMTLDEARQIL----------NVKEELSREEIQKRYKHLFKANDPSKGGSF 94 (127)
T ss_dssp ---HHHHHHHH----------T--G--SHHHHHHHHHHHHHHT-CCCTS-H
T ss_pred CCCHHHHHHHc----------CCCCccCHHHHHHHHHHHHhccCCCcCCCH
Confidence 35666666555 455458899999999999999998877764
No 156
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=32.53 E-value=30 Score=25.32 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAF 49 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l 49 (142)
.++.-....|...|.|+||+|+.+|...++
T Consensus 219 pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 219 PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 344557788999999999999999988665
No 157
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=30.17 E-value=1.1e+02 Score=17.50 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHhcCCCCCCcccHHHHHHHHH
Q 032342 77 IFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 77 l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
.+..++...-|.-++.+|+..+.
T Consensus 36 ~~~~f~~~~yG~~~l~~ll~~~~ 58 (74)
T PF12872_consen 36 KYPDFDPRDYGFSSLSELLESLP 58 (74)
T ss_dssp HHTT--TCCTTSSSHHHHHHT-T
T ss_pred HCCCCCccccCCCcHHHHHHhCC
Confidence 33667777778888888876543
No 158
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=28.08 E-value=45 Score=19.64 Aligned_cols=21 Identities=5% Similarity=0.186 Sum_probs=18.9
Q ss_pred hhCCCCCCccCHHHHHHHHHH
Q 032342 31 ALDLNNDGVLSRSELRKAFES 51 (142)
Q Consensus 31 ~~D~~~dG~Is~~el~~~l~~ 51 (142)
.||.....+|+.+++.+++..
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 588999999999999999975
No 159
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.87 E-value=3.3e+02 Score=22.07 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=44.7
Q ss_pred cCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHHHHHH
Q 032342 40 LSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSS--GSIDLHEFSAEMKKIMLAI 105 (142)
Q Consensus 40 Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~--g~Is~~EF~~~l~~~~~~~ 105 (142)
++-..++..|..+ |++...+..++.......+-.|+.+-| ...+..++..-|..|....
T Consensus 269 l~~~~lr~kL~~l-------glpt~G~r~~l~~Rh~e~~~l~Nan~Ds~~p~s~~~L~~~l~~wE~t~ 329 (397)
T TIGR00599 269 LTDSQIRKKLSEL-------GLSTNGTRQLLQKRHNEWETLWNSNCDSLEPVDKRELLRQLDSWERTQ 329 (397)
T ss_pred cCHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHh
Confidence 3455667777766 999888899988877777777766543 5689999999998887653
No 160
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.89 E-value=2.8e+02 Score=20.93 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032342 35 NNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMKK 100 (142)
Q Consensus 35 ~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~~ 100 (142)
..||.++..|+. .++.+ ...+++ +.++... +..+|...- ....++.+|+..+..
T Consensus 67 kADG~Vse~Ei~-~~~~l---~~~~~l----~~~~r~~-a~~lf~~~k---~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQL---MDRMNL----HGEARRA-AQQAFREGK---EPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHH---HHHcCC----CHHHHHH-HHHHHHHhc---ccCCCHHHHHHHHHH
Confidence 569999999998 55544 233453 3444222 233555542 233667777776653
No 161
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=26.20 E-value=2.7e+02 Score=23.39 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhc----CCCCCCcccHHHHHHHHH
Q 032342 28 IFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKF----DLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 28 ~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~----d~~~~g~Is~~EF~~~l~ 99 (142)
+|..|-....+.++..-|..+++.+ |+. -++..+.+..+.+-+.- .....+.++.+-|...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkst-------GLr--tsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKST-------GLR--TSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHc-------CCC--cCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 5776666668999999999999988 875 34444554333322221 112234566666666653
No 162
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=26.09 E-value=50 Score=20.05 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=18.0
Q ss_pred CCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcC
Q 032342 35 NNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFD 82 (142)
Q Consensus 35 ~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d 82 (142)
...|+||++++..++... .++++++.. ++..+.
T Consensus 17 K~~G~lT~~eI~~~L~~~-----------~~~~e~id~----i~~~L~ 49 (82)
T PF03979_consen 17 KKKGYLTYDEINDALPED-----------DLDPEQIDE----IYDTLE 49 (82)
T ss_dssp HHHSS-BHHHHHHH-S-S--------------HHHHHH----HHHHHH
T ss_pred hhcCcCCHHHHHHHcCcc-----------CCCHHHHHH----HHHHHH
Confidence 357888998888877632 256666666 555543
No 163
>PHA03102 Small T antigen; Reviewed
Probab=24.97 E-value=2.4e+02 Score=19.53 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=18.0
Q ss_pred CCCCCC--CHHHHHHHHHHHHHhcCCCCCC
Q 032342 60 GVDVAT--PPEQLTKLYDSIFEKFDLDSSG 87 (142)
Q Consensus 60 g~~~~~--~~~~~~~~~~~l~~~~d~~~~g 87 (142)
|++... +..++...+..+...+-+|.+|
T Consensus 12 Gl~~~A~~s~~eIKkAYr~la~~~HPDkgg 41 (153)
T PHA03102 12 GLPRSAWGNLPLMRKAYLRKCLEFHPDKGG 41 (153)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCcCCCc
Confidence 666555 6777777666666666666544
No 164
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=24.50 E-value=1.7e+02 Score=17.55 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCC--CCcccHHHHHHH
Q 032342 20 QFKKSVEEIFAALDLNNDGVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDS--SGSIDLHEFSAE 97 (142)
Q Consensus 20 ~~~~~l~~~F~~~D~~~dG~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~--~g~Is~~EF~~~ 97 (142)
.+...+...|++ .|..-..|-...+... =.+ .++.+...+++.+....++.. +..|+.+....+
T Consensus 4 ~lrk~I~~~FkL-----~Gl~Lr~eA~~~l~~~-------l~~--~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~A 69 (73)
T PF12213_consen 4 KLRKKIVKAFKL-----RGLSLRSEASKYLAEQ-------LQS--LSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIESA 69 (73)
T ss_dssp HHHHHHHHHHHH-----TT-EE-HHHHHHHHHH-------TTT--S-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHH
T ss_pred HHHHHHHHHhhh-----ccceecHHHHHHHHHH-------Hcc--CCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHH
Confidence 455677888887 6776666666555443 122 456666677778888888774 567888887776
Q ss_pred HHH
Q 032342 98 MKK 100 (142)
Q Consensus 98 l~~ 100 (142)
+..
T Consensus 70 v~e 72 (73)
T PF12213_consen 70 VKE 72 (73)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
No 165
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=24.34 E-value=1.2e+02 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.0
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHHHHH
Q 032342 28 IFAALDLNNDGVLSRSELRKAFESMRL 54 (142)
Q Consensus 28 ~F~~~D~~~dG~Is~~el~~~l~~~~~ 54 (142)
+...+|.|++|.++.+|+..+......
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~ 81 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFD 81 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHh
Confidence 344789999999999999998876643
No 166
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.92 E-value=2.5e+02 Score=21.93 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.8
Q ss_pred CCHHHHHH
Q 032342 65 TPPEQLTK 72 (142)
Q Consensus 65 ~~~~~~~~ 72 (142)
+|.+++.+
T Consensus 303 itReeal~ 310 (343)
T TIGR03573 303 ITREEAIE 310 (343)
T ss_pred CCHHHHHH
Confidence 44554444
No 167
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=23.46 E-value=2.3e+02 Score=18.72 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 032342 60 GVDVATPPEQLTKLYDSIFEKFDLDSSG 87 (142)
Q Consensus 60 g~~~~~~~~~~~~~~~~l~~~~d~~~~g 87 (142)
|++...+.+++.+.+.++...+.+|..|
T Consensus 72 Gv~~~As~~eIkkaYRrLa~~~HPDkgG 99 (116)
T PTZ00100 72 NISPTASKERIREAHKQLMLRNHPDNGG 99 (116)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 7776788888888888888888888755
No 168
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.18 E-value=2e+02 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=18.3
Q ss_pred CcccHHHHHHHHHHHHHHHhcccCC
Q 032342 87 GSIDLHEFSAEMKKIMLAIADGLGS 111 (142)
Q Consensus 87 g~Is~~EF~~~l~~~~~~~~~~~~~ 111 (142)
..|+++||...+...........+.
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~ 71 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGR 71 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999998877665544444
No 169
>PHA02105 hypothetical protein
Probab=23.03 E-value=98 Score=17.85 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032342 39 VLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSAEMK 99 (142)
Q Consensus 39 ~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~~l~ 99 (142)
+++.+|+..+.... .....+-..+.-..+..+|.-.-. +--.++|+||.+++.
T Consensus 4 klt~~~~~~a~~~n-------dq~eyp~~~e~~~ql~svfsipqi-~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQN-------DQNEYPVELELFDQLKTVFSIPQI-KYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcC-------ccccccccHHHHHHHHHhccccce-EEEEEeHHHhccccc
Confidence 46777777777643 211222222222222224433211 123579999988774
No 170
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=21.50 E-value=2e+02 Score=21.74 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=37.0
Q ss_pred CccCHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032342 38 GVLSRSELRKAFESMRLIETHFGVDVATPPEQLTKLYDSIFEKFDLDSSGSIDLHEFSA 96 (142)
Q Consensus 38 G~Is~~el~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g~Is~~EF~~ 96 (142)
-.++-..+..++..-+.... | +.++++++.-+.++++..-....+..|++..|+.
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~--~--R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSET--G--RGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHS--S------HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhh--C--CCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 35678899999976543332 4 3489999988778888877666778999999964
No 171
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.49 E-value=1.5e+02 Score=15.62 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.2
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 032342 58 HFGVDVATPPEQLTKLYDSIFEKFDLDSSG 87 (142)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~l~~~~d~~~~g 87 (142)
.+|++...+.+++...+..+.+.+.+|..+
T Consensus 5 vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~ 34 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKLALKYHPDKNP 34 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 347776788888888888888888887665
Done!