Query 032344
Match_columns 142
No_of_seqs 121 out of 904
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 2.5E-37 5.4E-42 228.0 12.9 121 10-142 3-125 (125)
2 PLN00193 expansin-A; Provision 100.0 2.7E-30 5.8E-35 210.1 13.9 118 24-142 26-155 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 8.1E-30 1.8E-34 206.4 12.8 112 18-142 15-138 (247)
4 PLN00050 expansin A; Provision 100.0 2.2E-29 4.7E-34 203.9 11.6 113 26-142 23-147 (247)
5 smart00837 DPBB_1 Rare lipopro 99.9 2.8E-26 6E-31 159.7 7.6 80 59-140 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.9 7.7E-23 1.7E-27 138.4 6.5 75 59-140 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.3 1.8E-11 3.9E-16 95.3 7.7 94 29-141 31-128 (232)
8 TIGR00413 rlpA rare lipoprotei 99.0 2.3E-09 5.1E-14 85.1 10.6 87 31-141 1-89 (208)
9 COG0797 RlpA Lipoproteins [Cel 99.0 5.5E-09 1.2E-13 84.2 10.0 95 24-141 78-173 (233)
10 PF00967 Barwin: Barwin family 98.9 3.4E-09 7.4E-14 77.1 4.6 57 68-141 55-115 (119)
11 PRK10672 rare lipoprotein A; P 98.8 7.7E-08 1.7E-12 82.0 11.5 90 28-140 78-168 (361)
12 PF07249 Cerato-platanin: Cera 98.5 7.5E-07 1.6E-11 65.4 8.8 65 57-142 43-111 (119)
13 PF02015 Glyco_hydro_45: Glyco 94.8 0.06 1.3E-06 42.9 4.9 53 59-122 70-122 (201)
14 PF10717 ODV-E18: Occlusion-de 61.1 9.1 0.0002 26.6 2.6 24 9-32 31-54 (85)
15 PRK15262 putative fimbrial pro 57.0 14 0.0003 28.9 3.4 39 6-45 3-41 (197)
16 PF07172 GRP: Glycine rich pro 52.8 14 0.0003 25.9 2.5 7 18-24 15-21 (95)
17 PF15240 Pro-rich: Proline-ric 48.8 12 0.00025 29.5 1.7 29 10-39 1-29 (179)
18 COG2156 KdpC K+-transporting A 41.6 14 0.0003 29.3 1.1 39 1-39 1-39 (190)
19 PRK00315 potassium-transportin 41.3 16 0.00036 29.0 1.5 37 1-37 1-37 (193)
20 PRK13999 potassium-transportin 39.2 15 0.00032 29.4 0.9 37 1-37 1-37 (201)
21 PRK14001 potassium-transportin 38.5 20 0.00042 28.4 1.5 37 1-37 1-37 (189)
22 PF13624 SurA_N_3: SurA N-term 35.0 13 0.00028 27.0 0.0 16 1-16 1-16 (154)
23 PF13956 Ibs_toxin: Toxin Ibs, 33.3 29 0.00063 17.4 1.1 9 18-26 9-17 (19)
24 PF04149 DUF397: Domain of unk 32.0 1.3E+02 0.0029 18.8 5.5 37 74-129 15-51 (56)
25 PRK10788 periplasmic folding c 31.9 24 0.00052 31.9 1.3 27 1-27 1-27 (623)
26 PTZ00257 Glycoprotein GP63 (le 31.1 46 0.001 30.9 2.9 23 72-102 505-527 (622)
27 PF13623 SurA_N_2: SurA N-term 27.5 47 0.001 24.9 2.0 16 2-17 1-16 (145)
28 PRK14003 potassium-transportin 26.7 36 0.00078 27.1 1.3 37 1-37 3-39 (194)
29 COG1930 CbiN ABC-type cobalt t 26.3 95 0.0021 22.0 3.2 29 9-40 7-35 (97)
30 PRK11657 dsbG disulfide isomer 24.9 1.1E+02 0.0024 24.6 3.9 15 93-107 117-132 (251)
31 PHA02945 interferon resistance 23.8 95 0.0021 21.7 2.8 22 92-121 59-80 (88)
32 PF12419 DUF3670: SNF2 Helicas 22.5 99 0.0021 22.7 2.9 23 116-138 80-102 (141)
33 PF03032 Brevenin: Brevenin/es 22.2 72 0.0016 19.5 1.7 19 9-28 3-21 (46)
34 PF14697 Fer4_21: 4Fe-4S diclu 22.2 26 0.00056 22.1 -0.3 45 72-120 10-59 (59)
35 TIGR02645 ARCH_P_rylase putati 22.2 3.1E+02 0.0068 24.8 6.4 53 70-139 26-79 (493)
36 PF10913 DUF2706: Protein of u 21.4 1.3E+02 0.0028 19.2 2.8 18 7-24 3-20 (60)
37 PF04202 Mfp-3: Foot protein 3 21.0 89 0.0019 20.8 2.1 9 33-41 25-33 (71)
38 PF07584 BatA: Aerotolerance r 20.9 1.4E+02 0.0029 19.5 3.0 23 3-25 52-74 (77)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=100.00 E-value=2.5e-37 Score=228.01 Aligned_cols=121 Identities=29% Similarity=0.602 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhhccCCeeeeEEEeCCCCCCCCccCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCC--CC
Q 032344 10 QWLSFLLFISQLICNTSFADVGTAARYGPPFLPTTCYGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISAS--EP 87 (142)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~G~aT~Y~~~~~~gaC~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~--~~ 87 (142)
+.+||++.++..|.++++++.|+||||++ +.+||||+++. .+.++||+|+.+|++|+.||+||||+|.+.. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~G~AT~Y~~-~~~gAC~~~~~----~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~ 77 (125)
T PLN03024 3 KRILIFSTVLVFLFSVSYATPGIATFYTS-YTPSACYRGTS----FGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVP 77 (125)
T ss_pred eeeHHHHHHHHHHhhhhcccceEEEEeCC-CCCccccCCCC----CCCEeEEeCHHHcCCCcccCceEEEEECCCCcccc
Confidence 44688888999999999999999999985 46789977653 6889999999999999999999999997632 24
Q ss_pred CCCCCCCeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhhcCCCceEEEEEEC
Q 032344 88 GTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQQ 142 (142)
Q Consensus 88 ~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~w~~ 142 (142)
.+|. +++|+|+|+|+||.. +++|||||++||++||++++|+|+|+|.|
T Consensus 78 ~~c~-gksV~V~VtD~CP~~------C~~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 78 HPCT-GKSVTVKIVDHCPSG------CASTLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cccc-CCeEEEEEEcCCCCC------CCCceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 5786 789999999999952 34699999999999999999999999986
No 2
>PLN00193 expansin-A; Provisional
Probab=99.97 E-value=2.7e-30 Score=210.09 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=96.0
Q ss_pred hccCCeeeeEEEeCCCCC----CCCc-cCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEE
Q 032344 24 NTSFADVGTAARYGPPFL----PTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQI 98 (142)
Q Consensus 24 ~~~~~~~G~aT~Y~~~~~----~gaC-~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V 98 (142)
+.+.+..++||||+.+.. +||| ||+.. ..+.+.++||+|+.||++|+.||+||||+|.....+..|.+|++|+|
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~-~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V 104 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLY-STGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI 104 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCcc-ccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence 344688999999996532 5899 66543 34567899999999999999999999999954334678987779999
Q ss_pred EEeecCCCCCCCC-----CC--CCCeeEcCHHHHHHhhcCCCceEEEEEEC
Q 032344 99 RIVDYALQLESTP-----SV--SGTTIVLSETAFRTIANSTATLINVEFQQ 142 (142)
Q Consensus 99 ~V~D~Cp~c~~~~-----~~--~~~~lDLS~~AF~~ia~~~~G~i~I~w~~ 142 (142)
+|||+||..+..| +| +..|||||++||.+||....|+|+|+|||
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrR 155 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQR 155 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEE
Confidence 9999999854221 23 35899999999999999999999999996
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=99.97 E-value=8.1e-30 Score=206.36 Aligned_cols=112 Identities=25% Similarity=0.557 Sum_probs=91.9
Q ss_pred HHHHhhhccCCeeeeEEEeCCCC----CCCCc-cCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCC
Q 032344 18 ISQLICNTSFADVGTAARYGPPF----LPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEP 92 (142)
Q Consensus 18 ~~~~~~~~~~~~~G~aT~Y~~~~----~~gaC-~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~ 92 (142)
++........+..++||||++++ .+||| ||+...+. .+.++||+| +||++|..||+||||+|.+ +..|++
T Consensus 15 ~~~~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~-~g~~~aa~s-~Lf~~G~~CGaCy~irC~~---~~~C~~ 89 (247)
T PLN03023 15 LLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTV-NGGNVAGVS-RLYRNGTGCGACYQVRCKA---PNLCSD 89 (247)
T ss_pred HhhhhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCC-Ccceeeeeh-hhhcCCchhcccEEeecCC---CCccCC
Confidence 34444455678899999999876 35799 66644222 356899998 9999999999999999976 778984
Q ss_pred CCeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhhcCC-------CceEEEEEEC
Q 032344 93 EQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANST-------ATLINVEFQQ 142 (142)
Q Consensus 93 g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~-------~G~i~I~w~~ 142 (142)
++|+|+|||.||+ ++.|||||.+||.+||+++ +|+|+|+|||
T Consensus 90 -~~v~V~iTd~~~~-------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrR 138 (247)
T PLN03023 90 -DGVNVVVTDYGEG-------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRR 138 (247)
T ss_pred -CCeEEEEEeCCCC-------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEE
Confidence 6899999999985 5799999999999999964 5999999997
No 4
>PLN00050 expansin A; Provisional
Probab=99.96 E-value=2.2e-29 Score=203.94 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=92.5
Q ss_pred cCCeeeeEEEeCCCCC----CCCc-cCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEE
Q 032344 26 SFADVGTAARYGPPFL----PTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRI 100 (142)
Q Consensus 26 ~~~~~G~aT~Y~~~~~----~gaC-~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V 100 (142)
..|..++||||+.+.. +||| ||+.. ..+.+.++||+|+.+|++|..||+||||+|.+. +..|.+ ++|+|+|
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~-~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~--~~~C~~-gsV~V~i 98 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLY-SQGYGTNTAALSTALFNNGLSCGACFEIKCVND--NIWCLP-GSIIITA 98 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCcc-ccCCCceeeeccHhHccCCccccceEEEEcCCC--CcccCC-CcEEEEE
Confidence 4688999999986542 5899 66543 235678999999999999999999999999652 457975 5899999
Q ss_pred eecCCCCCCC-----CCC--CCCeeEcCHHHHHHhhcCCCceEEEEEEC
Q 032344 101 VDYALQLEST-----PSV--SGTTIVLSETAFRTIANSTATLINVEFQQ 142 (142)
Q Consensus 101 ~D~Cp~c~~~-----~~~--~~~~lDLS~~AF~~ia~~~~G~i~I~w~~ 142 (142)
||+||..+.. .+| +..|||||++||.+||+..+|+|+|+|||
T Consensus 99 td~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRR 147 (247)
T PLN00050 99 TNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRR 147 (247)
T ss_pred ecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEE
Confidence 9999974311 123 35899999999999999999999999997
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=2.8e-26 Score=159.71 Aligned_cols=80 Identities=28% Similarity=0.521 Sum_probs=69.0
Q ss_pred EEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCCCCC-----CC--CCCeeEcCHHHHHHhhcC
Q 032344 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTP-----SV--SGTTIVLSETAFRTIANS 131 (142)
Q Consensus 59 iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~-----~~--~~~~lDLS~~AF~~ia~~ 131 (142)
.||+|+.||++|+.||+||||+|.+ .+..|.++++|+|+|||+||.++..+ +| +.+|||||++||.+||++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~--~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~ 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD--SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC--CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence 3799999999999999999999964 25689877899999999999864321 23 358999999999999999
Q ss_pred CCceEEEEE
Q 032344 132 TATLINVEF 140 (142)
Q Consensus 132 ~~G~i~I~w 140 (142)
+.|+|+|+|
T Consensus 79 ~~Gvi~v~y 87 (87)
T smart00837 79 KAGIVPVKY 87 (87)
T ss_pred cCCEEeeEC
Confidence 999999997
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.88 E-value=7.7e-23 Score=138.44 Aligned_cols=75 Identities=32% Similarity=0.610 Sum_probs=61.2
Q ss_pred EEEecCcccCCCcccCceEEEEecCCCCCCC--CCCC-CeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhhcCCCce
Q 032344 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGT--CEPE-QTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATL 135 (142)
Q Consensus 59 iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~--C~~g-~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~ 135 (142)
.||++..+|++|..||+||+++|.... +.. |+.+ ++|+|+|+|+||+| ..+|||||++||++||+++.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a-~~~~~~~~~~ksV~v~V~D~Cp~~------~~~~lDLS~~aF~~la~~~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAA-SATGTCKVGNKSVTVTVVDRCPGC------PPNHLDLSPAAFKALADPDAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---S-STT--BESEECEEEEEEEEE-TTS------SSSEEEEEHHHHHHTBSTTCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccC-CccceEEecCCeEEEEEEccCCCC------cCCEEEeCHHHHHHhCCCCceE
Confidence 378999999999999999999994322 222 7632 99999999999996 6899999999999999999999
Q ss_pred EEEEE
Q 032344 136 INVEF 140 (142)
Q Consensus 136 i~I~w 140 (142)
|+|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99999
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.8e-11 Score=95.30 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=75.1
Q ss_pred eeeeEEEeCCCCCCCCccCCCCCCCCCCCeEEEecCcccCCC----cccCceEEEEecCCCCCCCCCCCCeEEEEEeecC
Q 032344 29 DVGTAARYGPPFLPTTCYGNDPTQFPSSNLFAAAGDGIWDNG----ASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYA 104 (142)
Q Consensus 29 ~~G~aT~Y~~~~~~gaC~g~~~~~~~~~~~iaA~s~~ly~~G----~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~C 104 (142)
+.|.|||-+.+|.+||= .-.+++.+--|.|+++..-+-| +.-|+..+|.- +.+..+|.|+|+-
T Consensus 31 f~G~ATyTgsGYsGGAf---lLDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG----------PKG~TTVYVTDlY 97 (232)
T COG4305 31 FEGYATYTGSGYSGGAF---LLDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG----------PKGKTTVYVTDLY 97 (232)
T ss_pred cceeEEEecccccCceE---EecCcCCcceeeecCHHHcccCCchhhhccceEEEEC----------CCCceEEEEeccc
Confidence 36889987777665543 1123455567999999887765 56899999973 3466899999999
Q ss_pred CCCCCCCCCCCCeeEcCHHHHHHhhcCCCceEEEEEE
Q 032344 105 LQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQ 141 (142)
Q Consensus 105 p~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~w~ 141 (142)
|.. ..+.|||||.||.+|++...|+|+|+||
T Consensus 98 Peg------asGaLDLSpNAFakIGnm~qGrIpvqWr 128 (232)
T COG4305 98 PEG------ASGALDLSPNAFAKIGNMKQGRIPVQWR 128 (232)
T ss_pred ccc------cccccccChHHHhhhcchhcCccceeEE
Confidence 984 6789999999999999999999999998
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.04 E-value=2.3e-09 Score=85.07 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=66.9
Q ss_pred eeEEEeCCCCCC--CCccCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCC
Q 032344 31 GTAARYGPPFLP--TTCYGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLE 108 (142)
Q Consensus 31 G~aT~Y~~~~~~--gaC~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~ 108 (142)
|.|+||++.+.+ .|.+.. |....+. |++..| ..|..++|+... +|++|+|+|.|++|--
T Consensus 1 G~ASwYg~~f~G~~TAnGe~----y~~~~~t-AAHktL-----PlgT~V~VtNl~--------ngrsviVrVnDRGPf~- 61 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEV----YNMKALT-AAHKTL-----PFNTYVKVTNLH--------NNRSVIVRINDRGPFS- 61 (208)
T ss_pred CEEeEeCCCCCCCcCCCCee----cCCCccc-cccccC-----CCCCEEEEEECC--------CCCEEEEEEeCCCCCC-
Confidence 789999986543 233222 2333444 446666 699999999865 6899999999999974
Q ss_pred CCCCCCCCeeEcCHHHHHHhhcCCCceEEEEEE
Q 032344 109 STPSVSGTTIVLSETAFRTIANSTATLINVEFQ 141 (142)
Q Consensus 109 ~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~w~ 141 (142)
....||||++|+++|+-.+.|+.+|+.+
T Consensus 62 -----~gRiIDLS~aAA~~Lg~~~~G~a~V~ve 89 (208)
T TIGR00413 62 -----DDRIIDLSHAAAREIGLISRGVGQVRIE 89 (208)
T ss_pred -----CCCEEECCHHHHHHcCCCcCceEEEEEE
Confidence 5689999999999999999998887654
No 9
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=5.5e-09 Score=84.21 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=70.6
Q ss_pred hccCCeeeeEEEeCCCCCCCCc-cCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEee
Q 032344 24 NTSFADVGTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVD 102 (142)
Q Consensus 24 ~~~~~~~G~aT~Y~~~~~~gaC-~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D 102 (142)
.......|.|+||++...+.-- .|.- |+.. ...|++..| .=|..++|++.+ ||++|.|+|.|
T Consensus 78 ~~~~~~~G~ASwYg~~fhgr~TA~Ge~---~n~~-~~tAAH~TL-----P~~t~v~VtNl~--------NgrsvvVRIND 140 (233)
T COG0797 78 PASFEQVGYASWYGEKFHGRKTANGER---YDMN-ALTAAHKTL-----PLPTYVRVTNLD--------NGRSVVVRIND 140 (233)
T ss_pred cccccccceeeeeccccCCccccCccc---cccc-ccccccccC-----CCCCEEEEEEcc--------CCcEEEEEEeC
Confidence 4455668999999976543322 1221 2333 345556766 478899999876 79999999999
Q ss_pred cCCCCCCCCCCCCCeeEcCHHHHHHhhcCCCceEEEEEE
Q 032344 103 YALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQ 141 (142)
Q Consensus 103 ~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~w~ 141 (142)
++|-- ....||||.+|+++|+-.+.|+.+|+.+
T Consensus 141 RGPf~------~gRiIDlS~aAA~~l~~~~~G~a~V~i~ 173 (233)
T COG0797 141 RGPFV------SGRIIDLSKAAADKLGMIRSGVAKVRIE 173 (233)
T ss_pred CCCCC------CCcEeEcCHHHHHHhCCccCceEEEEEE
Confidence 99985 5689999999999999999988766543
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.85 E-value=3.4e-09 Score=77.07 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhhcCC----CceEEEEEE
Q 032344 68 DNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANST----ATLINVEFQ 141 (142)
Q Consensus 68 ~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~----~G~i~I~w~ 141 (142)
.+...||+|++|+.+. +|.+++|+|||+|+. +.|||.+.+|.+|-..+ .|.+.|+|+
T Consensus 55 ~gq~~CGkClrVTNt~--------tga~~~~RIVDqCsn---------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~ 115 (119)
T PF00967_consen 55 MGQDSCGKCLRVTNTA--------TGAQVTVRIVDQCSN---------GGLDLDPTVFNQIDTDGQGYAQGHLIVDYE 115 (119)
T ss_dssp -SGGGTT-EEEEE-TT--------T--EEEEEEEEE-SS---------SSEES-SSSHHHH-SSSHHHHHTEEEEEEE
T ss_pred cCcccccceEEEEecC--------CCcEEEEEEEEcCCC---------CCcccChhHHhhhccCCcccccceEEEEEE
Confidence 3457899999999865 478999999999975 47999999999996544 477888775
No 11
>PRK10672 rare lipoprotein A; Provisional
Probab=98.79 E-value=7.7e-08 Score=81.96 Aligned_cols=90 Identities=22% Similarity=0.222 Sum_probs=67.5
Q ss_pred CeeeeEEEeCCCCCCCCc-cCCCCCCCCCCCeEEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCC
Q 032344 28 ADVGTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQ 106 (142)
Q Consensus 28 ~~~G~aT~Y~~~~~~gaC-~g~~~~~~~~~~~iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~ 106 (142)
...|.|+||+..+.+..- .|.. |+... +.|++..| .-|..++|++.. ||++|+|+|.|++|-
T Consensus 78 ~~~G~ASwYg~~f~G~~TA~Ge~---~~~~~-~tAAH~tL-----Plps~vrVtNl~--------ngrsvvVrVnDRGP~ 140 (361)
T PRK10672 78 SQAGLAAIYDAEAGSNLTASGER---FDPNA-LTAAHPTL-----PIPSYVRVTNLA--------NGRMIVVRINDRGPY 140 (361)
T ss_pred ceEEEEEEeCCccCCCcCcCcee---ecCCc-CeeeccCC-----CCCCEEEEEECC--------CCcEEEEEEeCCCCC
Confidence 346999999976543211 1222 23333 44556666 589999999876 799999999999997
Q ss_pred CCCCCCCCCCeeEcCHHHHHHhhcCCCceEEEEE
Q 032344 107 LESTPSVSGTTIVLSETAFRTIANSTATLINVEF 140 (142)
Q Consensus 107 c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~w 140 (142)
- ....||||+.|+++|+-.+.+.|.|+.
T Consensus 141 ~------~gRiiDLS~aAA~~Lg~~~~~~V~ve~ 168 (361)
T PRK10672 141 G------PGRVIDLSRAAADRLNTSNNTKVRIDP 168 (361)
T ss_pred C------CCCeeEcCHHHHHHhCCCCCceEEEEE
Confidence 4 568999999999999988778888775
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.53 E-value=7.5e-07 Score=65.42 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=47.3
Q ss_pred CeEEEecCc-ccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhhcC---C
Q 032344 57 NLFAAAGDG-IWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANS---T 132 (142)
Q Consensus 57 ~~iaA~s~~-ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~---~ 132 (142)
..|.+.... -| |...||.|+|++. +|++|.|..+|.-+ ..|+||++||..|.+- .
T Consensus 43 p~IGg~~~V~gW-nS~~CGtC~~lty----------~g~si~vlaID~a~----------~gfnis~~A~n~LT~g~a~~ 101 (119)
T PF07249_consen 43 PYIGGAPAVAGW-NSPNCGTCWKLTY----------NGRSIYVLAIDHAG----------GGFNISLDAMNDLTNGQAVE 101 (119)
T ss_dssp TSEEEETT--ST-T-TTTT-EEEEEE----------TTEEEEEEEEEE-S----------SSEEE-HHHHHHHHTS-CCC
T ss_pred CeeccccccccC-CCCCCCCeEEEEE----------CCeEEEEEEEecCC----------CcccchHHHHHHhcCCcccc
Confidence 467777664 46 4578999999997 47999999999843 4599999999999873 4
Q ss_pred CceEEEEEEC
Q 032344 133 ATLINVEFQQ 142 (142)
Q Consensus 133 ~G~i~I~w~~ 142 (142)
.|+|+++|++
T Consensus 102 lG~V~a~~~q 111 (119)
T PF07249_consen 102 LGRVDATYTQ 111 (119)
T ss_dssp C-EEE-EEEE
T ss_pred eeEEEEEEEE
Confidence 6999999975
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=94.77 E-value=0.06 Score=42.89 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=31.6
Q ss_pred EEEecCcccCCCcccCceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCCCCCCCCCCeeEcCH
Q 032344 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSE 122 (142)
Q Consensus 59 iaA~s~~ly~~G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~ 122 (142)
+||++-.-......|++||+++-++.. ..||+..|++++.--.- ..+||||.-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-----l~GKkmiVQ~tNtG~dl------g~n~FDl~i 122 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-----LKGKKMIVQVTNTGGDL------GSNQFDLAI 122 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-----TTT-EEEEEEEEE-TTT------TTTEEEEE-
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-----cCCCEeEEEecccCCCC------CCCeEEEEe
Confidence 566552212223679999999987632 24899999999975432 458999864
No 14
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=61.13 E-value=9.1 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhccCCeeee
Q 032344 9 LQWLSFLLFISQLICNTSFADVGT 32 (142)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~G~ 32 (142)
|-.++|+|++++++.++|...++.
T Consensus 31 LivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 31 LIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCC
Confidence 445555555666666666655444
No 15
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=56.98 E-value=14 Score=28.89 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCeeeeEEEeCCCCCCCCc
Q 032344 6 RQALQWLSFLLFISQLICNTSFADVGTAARYGPPFLPTTC 45 (142)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~~~~~~gaC 45 (142)
||..++.++++.+++++.+...+..|+.+|.|.= ....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~g~I~f~G~I-v~~tC 41 (197)
T PRK15262 3 RKLMKKIILFLGLLFALTSPPAYAGQDVDLTANI-KNSTC 41 (197)
T ss_pred hHHHHHHHHHHHHHHHhcccccccCCEEEEEEEE-EcCCc
Confidence 6777777777777888878878889999999842 23568
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.76 E-value=14 Score=25.95 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.7
Q ss_pred HHHHhhh
Q 032344 18 ISQLICN 24 (142)
Q Consensus 18 ~~~~~~~ 24 (142)
++|+++|
T Consensus 15 ~lLlisS 21 (95)
T PF07172_consen 15 ALLLISS 21 (95)
T ss_pred HHHHHHh
Confidence 3334433
No 17
>PF15240 Pro-rich: Proline-rich
Probab=48.79 E-value=12 Score=29.48 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhccCCeeeeEEEeCCC
Q 032344 10 QWLSFLLFISQLICNTSFADVGTAARYGPP 39 (142)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~G~aT~Y~~~ 39 (142)
|+|+||.++||+|+| |....=...+++..
T Consensus 1 MLlVLLSvALLALSS-AQ~~dEdv~~e~~~ 29 (179)
T PF15240_consen 1 MLLVLLSVALLALSS-AQSTDEDVSQEESP 29 (179)
T ss_pred ChhHHHHHHHHHhhh-ccccccccccccCc
Confidence 345556667777744 44445555666544
No 18
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=41.57 E-value=14 Score=29.32 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccCCeeeeEEEeCCC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYGPP 39 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~~~ 39 (142)
|.+.+|.+|..++++.++..++.++...-.|++-|....
T Consensus 1 m~~~lr~Al~~~~~l~li~G~iYPl~~t~igq~~Fp~QA 39 (190)
T COG2156 1 MMRQLRPALVLTLVLLLITGLIYPLLVTGIGQAAFPNQA 39 (190)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 788999999999999999888888888777887777654
No 19
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=41.32 E-value=16 Score=28.96 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccCCeeeeEEEeC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~ 37 (142)
|.+.||+++..+++++++...+.+++.+-.|+..|-.
T Consensus 1 mm~~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~fp~ 37 (193)
T PRK00315 1 MMSLLRPALVLFVFLTLITGVAYPLLTTGIGQAAFPW 37 (193)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 5677999999999999888888888777666666544
No 20
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=39.17 E-value=15 Score=29.43 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccCCeeeeEEEeC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~ 37 (142)
|.+.||.++..+++++++...+.+++..-.|+.-|-.
T Consensus 1 ~m~~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~Fp~ 37 (201)
T PRK13999 1 MLKELRPALVLLVALTAITGLAYPLAMTGLAGVLFPA 37 (201)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5677999999999999888888887776666665543
No 21
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=38.54 E-value=20 Score=28.44 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccCCeeeeEEEeC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~ 37 (142)
|.+.||.++..++++.++..++.+++..-.|++-|-.
T Consensus 1 m~~~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~Fp~ 37 (189)
T PRK14001 1 MRRQLLPALTMLLVFTVITGIVYPLAVTGVGQLFFGD 37 (189)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6788999999999999888888888777666666544
No 22
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=35.03 E-value=13 Score=26.97 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHH
Q 032344 1 MLSRIRQALQWLSFLL 16 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (142)
|++.||++..++.+++
T Consensus 1 Ml~~~r~~~~~~~~~~ 16 (154)
T PF13624_consen 1 MLRFIRKNSKVFKILI 16 (154)
T ss_dssp ----------------
T ss_pred CccccccchhhhhhhH
Confidence 8999999976444333
No 23
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=33.29 E-value=29 Score=17.42 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.8
Q ss_pred HHHHhhhcc
Q 032344 18 ISQLICNTS 26 (142)
Q Consensus 18 ~~~~~~~~~ 26 (142)
+++++.|.+
T Consensus 9 vvLLliSf~ 17 (19)
T PF13956_consen 9 VVLLLISFP 17 (19)
T ss_pred HHHHhcccc
Confidence 334444543
No 24
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=32.03 E-value=1.3e+02 Score=18.78 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=26.5
Q ss_pred CceEEEEecCCCCCCCCCCCCeEEEEEeecCCCCCCCCCCCCCeeEcCHHHHHHhh
Q 032344 74 GRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIA 129 (142)
Q Consensus 74 G~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia 129 (142)
|.|+||.-. ++ . |-|.|.=.. ....|-+++++|..+-
T Consensus 15 ~~CVEva~~---------~~--~-v~vRDSk~p-------~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARL---------PG--G-VAVRDSKDP-------DGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEee---------cc--e-EEEecCCCC-------CCCEEEeCHHHHHHHH
Confidence 889999742 23 2 888885321 3578999999999863
No 25
>PRK10788 periplasmic folding chaperone; Provisional
Probab=31.94 E-value=24 Score=31.91 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSF 27 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (142)
||+.||.+.+..++-|++.+++.++.-
T Consensus 1 Ml~~~R~~~~~~~~~~i~~li~l~F~~ 27 (623)
T PRK10788 1 MMDNLRTAANSVVLKIILALIILSFIL 27 (623)
T ss_pred CcHHHHhhccChHHHHHHHHHHHHHHH
Confidence 999999986654444443333334433
No 26
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=31.05 E-value=46 Score=30.94 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=15.7
Q ss_pred ccCceEEEEecCCCCCCCCCCCCeEEEEEee
Q 032344 72 SCGRQYLVRCISASEPGTCEPEQTIQIRIVD 102 (142)
Q Consensus 72 ~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D 102 (142)
.=+.|++|+|.+ +.+++.|++.+
T Consensus 505 ~~~~C~~v~C~~--------~~~t~sV~v~G 527 (622)
T PTZ00257 505 NNALCANVMCDT--------AARTYSVQVRG 527 (622)
T ss_pred cCCEEEEEECCC--------CCCEEEEEEEe
Confidence 347899999954 23567776664
No 27
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=27.54 E-value=47 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 032344 2 LSRIRQALQWLSFLLF 17 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (142)
|+.||+....+.++|.
T Consensus 1 L~kIR~r~~lLi~vIg 16 (145)
T PF13623_consen 1 LQKIRQRGGLLIIVIG 16 (145)
T ss_pred ChhHhhcchHHHHHHH
Confidence 6789997655444443
No 28
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=26.70 E-value=36 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhccCCeeeeEEEeC
Q 032344 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~ 37 (142)
|.+.||.++..++++.++.+.+.+++..-.|+.-|-.
T Consensus 3 ~~~~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~Fp~ 39 (194)
T PRK14003 3 FIREAIRAIRSTLVLWLLTALIYPFLMIAIGQTVFPY 39 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 5677889998888888888888777766556555443
No 29
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=26.29 E-value=95 Score=22.00 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhccCCeeeeEEEeCCCC
Q 032344 9 LQWLSFLLFISQLICNTSFADVGTAARYGPPF 40 (142)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~G~aT~Y~~~~ 40 (142)
+.++++.+++++.++..+.. +.-+|+..+
T Consensus 7 ~~ll~i~~i~~l~li~~~~~---~~ge~gGaD 35 (97)
T COG1930 7 LNLLAIGIILALPLIPFSFV---TDGEFGGAD 35 (97)
T ss_pred HHHHHHHHHHHHHHHHheec---ccccccCCc
Confidence 45666666677777777665 455677543
No 30
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=24.86 E-value=1.1e+02 Score=24.59 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=11.1
Q ss_pred CCeEEEEEee-cCCCC
Q 032344 93 EQTIQIRIVD-YALQL 107 (142)
Q Consensus 93 g~sV~V~V~D-~Cp~c 107 (142)
++.+.++.+| .||-|
T Consensus 117 ak~~I~vFtDp~CpyC 132 (251)
T PRK11657 117 APRIVYVFADPNCPYC 132 (251)
T ss_pred CCeEEEEEECCCChhH
Confidence 5666677789 59986
No 31
>PHA02945 interferon resistance protein; Provisional
Probab=23.85 E-value=95 Score=21.70 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCeEEEEEeecCCCCCCCCCCCCCeeEcC
Q 032344 92 PEQTIQIRIVDYALQLESTPSVSGTTIVLS 121 (142)
Q Consensus 92 ~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS 121 (142)
.|++|+++|...=| .++++|||
T Consensus 59 ~GqkvV~KVirVd~--------~kg~IDlS 80 (88)
T PHA02945 59 VGKTVKVKVIRVDY--------TKGYIDVN 80 (88)
T ss_pred cCCEEEEEEEEECC--------CCCEEEeE
Confidence 37889999977654 36899997
No 32
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.46 E-value=99 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.1
Q ss_pred CeeEcCHHHHHHhhcCCCceEEE
Q 032344 116 TTIVLSETAFRTIANSTATLINV 138 (142)
Q Consensus 116 ~~lDLS~~AF~~ia~~~~G~i~I 138 (142)
++-+||++-|.+|+..+.+.|.|
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~ 102 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRF 102 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEE
Confidence 56789999999999999988765
No 33
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.23 E-value=72 Score=19.55 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 032344 9 LQWLSFLLFISQLICNTSFA 28 (142)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (142)
++++++++++++.+ |+|-+
T Consensus 3 lKKsllLlfflG~I-SlSlC 21 (46)
T PF03032_consen 3 LKKSLLLLFFLGTI-SLSLC 21 (46)
T ss_pred chHHHHHHHHHHHc-ccchH
Confidence 45667777666665 55544
No 34
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=22.18 E-value=26 Score=22.08 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=18.2
Q ss_pred ccCceEEEEecCCCCCCCC---CCCCeEEEEEeecCCCCC-CCCCCC-CCeeEc
Q 032344 72 SCGRQYLVRCISASEPGTC---EPEQTIQIRIVDYALQLE-STPSVS-GTTIVL 120 (142)
Q Consensus 72 ~CG~c~~V~c~~~~~~~~C---~~g~sV~V~V~D~Cp~c~-~~~~~~-~~~lDL 120 (142)
.||+|+++ |.... -.. .+++.+.+ ..|.|-+|. |...|+ .+.|.|
T Consensus 10 ~Cg~C~~~-Cp~~~--~~~i~~~~~~~~~v-~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 10 GCGKCVRA-CPDGA--IDAIEVDEGKKVPV-NPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp --SCCCHH-CCCCS---S-ECCTTTTSSEC-E-TT--S-SCCCCCSSSTTSEEE
T ss_pred ChhhHHhH-cCccc--eeeEEecCCeeEEe-ccccCcCcCcccccCCCccCCCC
Confidence 58888876 53210 000 12333333 368898884 544555 355543
No 35
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=22.17 E-value=3.1e+02 Score=24.84 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=36.5
Q ss_pred CcccCceEEEEecCCCCCCCCCCCCeEEEEEeec-CCCCCCCCCCCCCeeEcCHHHHHHhhcCCCceEEEE
Q 032344 70 GASCGRQYLVRCISASEPGTCEPEQTIQIRIVDY-ALQLESTPSVSGTTIVLSETAFRTIANSTATLINVE 139 (142)
Q Consensus 70 G~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~-Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~I~ 139 (142)
|-.=+..++|+. +++++.+.|++. .- -.++.+-||..||++|.-..--.|.|.
T Consensus 26 g~~~~~rv~v~~----------~~~~~~a~~~~~~~~-------~~~~~~gl~~~~~~~l~~~~g~~v~v~ 79 (493)
T TIGR02645 26 GFTPQDRVEVRI----------GGKSLIAILVGSDTL-------VEMGEIGLSVSAVETFMAREGDIVTVT 79 (493)
T ss_pred CCCcCCeEEEEe----------CCEEEEEEEeccccc-------ccCCeeeccHHHHHHcCCCCCCEEEEe
Confidence 445578899985 468898888763 22 146789999999999954443345553
No 36
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=21.36 E-value=1.3e+02 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 032344 7 QALQWLSFLLFISQLICN 24 (142)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (142)
.++++++++|.+.++|+-
T Consensus 3 k~lkf~lv~imlaqllsc 20 (60)
T PF10913_consen 3 KSLKFLLVLIMLAQLLSC 20 (60)
T ss_pred hHHHHHHHHHHHHHHHcC
Confidence 356777778877777753
No 37
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=21.02 E-value=89 Score=20.84 Aligned_cols=9 Identities=22% Similarity=0.312 Sum_probs=4.7
Q ss_pred EEEeCCCCC
Q 032344 33 AARYGPPFL 41 (142)
Q Consensus 33 aT~Y~~~~~ 41 (142)
+-+|+|.+.
T Consensus 25 g~~y~p~y~ 33 (71)
T PF04202_consen 25 GYYYYPGYN 33 (71)
T ss_pred ccccCCCCC
Confidence 345666543
No 38
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=20.86 E-value=1.4e+02 Score=19.49 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 032344 3 SRIRQALQWLSFLLFISQLICNT 25 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (142)
+++|+++..++.++.++++....
T Consensus 52 ~~~~~~l~l~L~lLal~lli~Al 74 (77)
T PF07584_consen 52 RRLRRHLLLLLRLLALALLILAL 74 (77)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Confidence 45788887777666655554443
Done!