BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032345
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C +CA ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120
P+ KVT+ + G+ VP+D+YIL AE Q I LP++CR G C++CA +I +G + Q
Sbjct: 1 PSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQ 60
Query: 121 PE 122
+
Sbjct: 61 SD 62
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T KVT+ + G HE VP+D+YIL AE Q LPF+CR G C++ A ++ SG + Q
Sbjct: 2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T+KVT+ + G+ VP+DQYIL AE I LP++CR G C++CA ++ SG + Q
Sbjct: 2 TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 61
Query: 122 E 122
+
Sbjct: 62 D 62
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121
T+KVT+ R G VPED+YIL AE Q + LPF+CR G C++CA ++ G++ Q
Sbjct: 2 TYKVTLV-RPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 122 E 122
+
Sbjct: 61 D 61
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
EF P+D YIL AE + I LP++CR G C+SCA ++K+G + Q +
Sbjct: 15 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDD 60
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ 120
T+KVT+ + G+ +D YIL AE + LP++CR G C++CA I SG I Q
Sbjct: 1 ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 121 PE 122
+
Sbjct: 61 SD 62
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
E VP+D YIL AE I LP++CR G C+SCA ++ SG + Q +
Sbjct: 15 ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 81 PEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
PED YIL AE + LP++CR G C+SCA +++SG++ Q +
Sbjct: 17 PEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSD 58
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
VP+DQYIL AE I LP++CR G C++CA ++ SG + Q +
Sbjct: 18 VPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSD 60
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG 116
VP+D+YIL AE Q + LP++CR G C++CA ++ SG
Sbjct: 18 VPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSG 54
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 77 EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
EF +D Y+L AE + I +P++CR G C+SCA ++ SG I Q +
Sbjct: 15 EFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTIL 138
ED+YIL +E QN+ LP++CR G C++CA ++ G++ + + E K +L
Sbjct: 20 EDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILL 76
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
+K+ + ++ G+ DQYIL AE Q + LP++CR G C++CA ++ G + Q +
Sbjct: 2 YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 123 ALGISAELKSKA 134
+ + SK
Sbjct: 62 QSFLDEDQISKG 73
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG 116
VP+D+YIL AE + + LP++CR G C++CA ++ SG
Sbjct: 18 VPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSG 54
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIK 119
V E +YIL AE+Q PF+CR G C +CA +K G+I
Sbjct: 42 VAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEID 81
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIK 119
V E +YIL AE+Q PF+CR G C +CA +K G+I
Sbjct: 42 VAEGEYILEAAEAQGYDWPFSCRAGACANCASIVKEGEID 81
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
+D YIL AE + LP++CR G C++CA +I +G + Q +
Sbjct: 20 DDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 60
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
+D YIL AE + LP++CR G C++CA +I +G + Q +
Sbjct: 21 DDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 61
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 82 EDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPE 122
+D YIL AE + LP++CR G C++CA +I +G + Q +
Sbjct: 20 DDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSD 60
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIK 119
V E +YIL AE+Q PF+CR G C +CA + G I
Sbjct: 42 VNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDID 81
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEA 123
VPE IL AE LPF+CR G C+SC ++ SG + + E
Sbjct: 17 VPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEG 60
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 32.3 bits (72), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 60 IPTHKVTVHDRFRGVVHEFL-VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQI 118
+ H+V + +F V F+ + + + + A Q I +P CR G C +C +SG
Sbjct: 1 MSNHQVAL--QFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNY 58
Query: 119 KQPE 122
PE
Sbjct: 59 DMPE 62
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 92 SQNITLPFACRHGCCTSCAVRIKSGQIKQPEA 123
S+ LP +C+ G C++C +I SG + Q E
Sbjct: 28 SEKADLPLSCQAGACSTCLGKIVSGTVDQSEG 59
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 78 FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQ 117
F +P ++ IL N+ +P +C G C SC + SG+
Sbjct: 249 FEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGE 288
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 80 VPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTIL 138
+ E+ IL AE I LPF+C G C+SC ++ G++ Q + + + E K +L
Sbjct: 20 IDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALL 78
>pdb|1KN0|A Chain A, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|B Chain B, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|C Chain C, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|D Chain D, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|E Chain E, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|F Chain F, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|G Chain G, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|H Chain H, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|I Chain I, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|J Chain J, Crystal Structure Of The Human Rad52 Protein
pdb|1KN0|K Chain K, Crystal Structure Of The Human Rad52 Protein
Length = 212
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 104 GCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137
G C V++K G + G+S LKSKA ++
Sbjct: 106 GVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSL 139
>pdb|1H2I|A Chain A, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|B Chain B, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|C Chain C, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|D Chain D, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|E Chain E, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|F Chain F, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|G Chain G, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|H Chain H, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|I Chain I, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|J Chain J, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|K Chain K, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|L Chain L, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|M Chain M, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|N Chain N, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|O Chain O, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|P Chain P, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|Q Chain Q, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|R Chain R, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|S Chain S, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|T Chain T, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|U Chain U, Human Rad52 Protein, N-Terminal Domain
pdb|1H2I|V Chain V, Human Rad52 Protein, N-Terminal Domain
Length = 209
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 104 GCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137
G C V++K G + G+S LKSKA ++
Sbjct: 106 GVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSL 139
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 78 FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQ 117
F D+ ++ A QNI L +CR G C +C G
Sbjct: 19 FECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGD 58
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 ITLPFACRHGCCTSCAVRIKSG 116
+T +CR G C SCA+ I G
Sbjct: 59 LTFRRSCREGICGSCAMNINGG 80
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 ITLPFACRHGCCTSCAVRIKSG 116
+T +CR G C SCA+ I G
Sbjct: 59 LTFRRSCREGICGSCAMNINGG 80
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 ITLPFACRHGCCTSCAVRIKSG 116
+T +CR G C SCA+ I G
Sbjct: 59 LTFRRSCREGICGSCAMNIAGG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,975,794
Number of Sequences: 62578
Number of extensions: 138853
Number of successful extensions: 330
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 42
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)