Query 032345
Match_columns 142
No_of_seqs 181 out of 1335
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00134 petF ferredoxin; Vali 99.9 8.5E-23 1.9E-27 145.3 10.0 83 60-142 1-83 (99)
2 TIGR02008 fdx_plant ferredoxin 99.9 6.6E-22 1.4E-26 139.9 9.5 80 62-142 2-81 (97)
3 PLN03136 Ferredoxin; Provision 99.8 1E-20 2.2E-25 144.0 9.6 83 58-142 50-132 (148)
4 PTZ00038 ferredoxin; Provision 99.8 2.9E-20 6.3E-25 146.6 11.3 83 58-142 91-173 (191)
5 PRK10713 2Fe-2S ferredoxin Yfa 99.8 3.2E-20 6.8E-25 128.3 8.2 73 63-142 2-75 (84)
6 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 2E-19 4.4E-24 150.3 10.2 109 32-142 209-341 (352)
7 PRK10684 HCP oxidoreductase, N 99.8 6.4E-19 1.4E-23 146.7 9.8 108 31-142 204-324 (332)
8 PRK11872 antC anthranilate dio 99.7 8.3E-18 1.8E-22 140.9 9.7 79 63-142 3-83 (340)
9 cd00207 fer2 2Fe-2S iron-sulfu 99.7 1.1E-17 2.4E-22 112.9 8.2 70 73-142 7-76 (84)
10 PRK07609 CDP-6-deoxy-delta-3,4 99.7 7.9E-18 1.7E-22 140.0 9.1 76 63-142 3-80 (339)
11 PF00111 Fer2: 2Fe-2S iron-sul 99.7 2.9E-18 6.4E-23 115.1 4.7 70 72-142 4-76 (78)
12 COG0633 Fdx Ferredoxin [Energy 99.7 1.5E-17 3.2E-22 119.0 6.7 67 76-142 15-86 (102)
13 PRK05713 hypothetical protein; 99.7 5E-17 1.1E-21 134.5 8.2 67 76-142 9-75 (312)
14 TIGR01941 nqrF NADH:ubiquinone 99.7 1.9E-16 4.1E-21 135.6 8.7 82 60-142 27-111 (405)
15 TIGR02007 fdx_isc ferredoxin, 99.7 2.9E-16 6.2E-21 113.5 7.7 67 76-142 16-89 (110)
16 PLN02593 adrenodoxin-like ferr 99.6 2.7E-16 5.8E-21 115.2 6.7 78 64-142 2-88 (117)
17 PRK05464 Na(+)-translocating N 99.6 6.7E-16 1.5E-20 132.3 8.7 81 61-142 32-115 (409)
18 PTZ00490 Ferredoxin superfamil 99.6 5E-15 1.1E-19 112.2 7.3 85 56-142 30-123 (143)
19 COG2871 NqrF Na+-transporting 99.3 3.7E-12 8E-17 106.9 6.4 78 63-141 35-115 (410)
20 COG3894 Uncharacterized metal- 99.0 3.5E-10 7.5E-15 100.2 4.0 73 64-142 3-77 (614)
21 PRK07569 bidirectional hydroge 98.7 3.9E-08 8.5E-13 79.1 6.9 48 65-117 4-57 (234)
22 PF13510 Fer2_4: 2Fe-2S iron-s 98.7 2.6E-08 5.7E-13 68.5 4.7 50 64-118 3-62 (82)
23 KOG3309 Ferredoxin [Energy pro 98.6 3.9E-08 8.5E-13 75.3 5.1 78 63-141 44-129 (159)
24 PRK08166 NADH dehydrogenase su 98.6 1E-07 2.2E-12 88.7 6.4 45 72-118 7-57 (847)
25 PRK06259 succinate dehydrogena 98.2 1.6E-06 3.4E-11 76.0 4.8 42 76-118 23-70 (486)
26 PRK11433 aldehyde oxidoreducta 98.2 4.9E-06 1.1E-10 67.1 6.6 54 62-118 49-104 (217)
27 PRK09908 xanthine dehydrogenas 98.0 2.5E-05 5.4E-10 60.4 7.0 53 63-118 7-60 (159)
28 PTZ00305 NADH:ubiquinone oxido 98.0 2.1E-05 4.6E-10 66.0 6.5 51 60-117 66-123 (297)
29 PF13085 Fer2_3: 2Fe-2S iron-s 97.9 1.3E-05 2.9E-10 58.4 4.3 44 76-120 21-70 (110)
30 PRK13552 frdB fumarate reducta 97.8 3E-05 6.4E-10 63.1 5.2 44 76-120 26-75 (239)
31 PRK12386 fumarate reductase ir 97.8 5.1E-05 1.1E-09 62.3 6.3 45 75-120 21-71 (251)
32 PRK09130 NADH dehydrogenase su 97.8 5.3E-05 1.1E-09 69.7 6.4 46 64-115 3-54 (687)
33 TIGR03193 4hydroxCoAred 4-hydr 97.7 8.8E-05 1.9E-09 56.7 6.0 46 72-118 7-54 (148)
34 PRK12814 putative NADPH-depend 97.7 8.2E-05 1.8E-09 67.8 6.1 43 72-117 9-57 (652)
35 COG1034 NuoG NADH dehydrogenas 97.6 0.0001 2.2E-09 68.1 5.7 46 64-115 3-54 (693)
36 TIGR01973 NuoG NADH-quinone ox 97.6 9.3E-05 2E-09 66.6 5.4 43 72-117 4-52 (603)
37 PRK08640 sdhB succinate dehydr 97.6 4.3E-05 9.3E-10 62.5 2.9 44 76-120 25-81 (249)
38 TIGR00384 dhsB succinate dehyd 97.6 5.5E-05 1.2E-09 60.3 3.5 43 76-119 17-65 (220)
39 PLN00129 succinate dehydrogena 97.6 4.2E-05 9.2E-10 63.7 2.7 45 76-121 62-115 (276)
40 PRK12577 succinate dehydrogena 97.5 0.00014 3E-09 61.5 4.9 44 76-120 21-70 (329)
41 PRK12575 succinate dehydrogena 97.5 7E-05 1.5E-09 60.9 2.8 43 77-120 24-74 (235)
42 PRK07570 succinate dehydrogena 97.5 6.6E-05 1.4E-09 61.6 2.6 41 77-118 23-74 (250)
43 PRK05950 sdhB succinate dehydr 97.5 0.00014 2.9E-09 58.5 4.3 44 76-120 20-70 (232)
44 PRK07860 NADH dehydrogenase su 97.4 0.00029 6.4E-09 65.7 6.3 48 65-117 5-58 (797)
45 TIGR03198 pucE xanthine dehydr 97.3 0.0006 1.3E-08 52.3 6.1 50 65-117 4-55 (151)
46 PRK12385 fumarate reductase ir 97.3 0.00023 5E-09 58.0 4.0 43 76-119 27-75 (244)
47 PRK08493 NADH dehydrogenase su 97.3 0.0004 8.6E-09 65.4 5.9 43 72-117 7-55 (819)
48 PRK09129 NADH dehydrogenase su 97.3 0.00047 1E-08 63.8 6.0 43 72-117 7-55 (776)
49 COG0479 FrdB Succinate dehydro 97.2 0.00022 4.8E-09 58.2 3.0 44 77-121 23-72 (234)
50 PRK12576 succinate dehydrogena 97.2 0.00043 9.3E-09 57.5 4.7 44 76-120 27-76 (279)
51 COG2080 CoxS Aerobic-type carb 97.1 0.0018 3.8E-08 50.0 6.7 46 72-118 9-56 (156)
52 COG3383 Uncharacterized anaero 96.7 0.0033 7.1E-08 59.0 5.8 44 72-118 11-60 (978)
53 TIGR02963 xanthine_xdhA xanthi 96.6 0.0034 7.4E-08 55.6 5.1 42 72-113 6-50 (467)
54 PRK09800 putative hypoxanthine 96.4 0.0085 1.8E-07 57.4 6.5 51 65-118 3-55 (956)
55 TIGR03311 Se_dep_Molyb_1 selen 96.1 0.01 2.2E-07 56.1 5.7 44 72-118 6-51 (848)
56 TIGR03313 Se_sel_red_Mo probab 95.9 0.013 2.7E-07 56.2 5.4 46 72-118 4-51 (951)
57 PLN00192 aldehyde oxidase 95.7 0.028 6.2E-07 55.6 6.7 48 64-113 5-55 (1344)
58 TIGR02969 mam_aldehyde_ox alde 94.8 0.049 1.1E-06 53.9 5.3 43 72-114 8-53 (1330)
59 KOG2282 NADH-ubiquinone oxidor 92.5 0.22 4.8E-06 45.4 4.9 49 63-115 31-85 (708)
60 COG4630 XdhA Xanthine dehydrog 85.2 2.3 5E-05 37.7 5.7 49 63-113 7-58 (493)
61 PLN02906 xanthine dehydrogenas 85.1 1.1 2.3E-05 44.7 4.1 32 83-114 1-33 (1319)
62 TIGR01372 soxA sarcosine oxida 83.6 2.6 5.6E-05 40.6 5.9 50 63-116 11-71 (985)
63 PRK08345 cytochrome-c3 hydroge 82.3 0.82 1.8E-05 37.5 1.8 34 84-117 225-267 (289)
64 PRK00054 dihydroorotate dehydr 82.1 1.1 2.3E-05 35.8 2.3 32 85-116 195-232 (250)
65 KOG3049 Succinate dehydrogenas 80.3 0.86 1.9E-05 37.5 1.2 32 83-114 76-113 (288)
66 PF10418 DHODB_Fe-S_bind: Iron 79.9 1.2 2.5E-05 26.8 1.4 19 99-117 4-22 (40)
67 cd06218 DHOD_e_trans FAD/NAD b 78.9 2.2 4.8E-05 34.0 3.1 36 84-119 193-236 (246)
68 cd06219 DHOD_e_trans_like1 FAD 78.8 1.9 4.2E-05 34.3 2.8 32 85-117 194-231 (248)
69 cd06220 DHOD_e_trans_like2 FAD 77.2 1.9 4E-05 34.0 2.2 31 84-114 180-216 (233)
70 COG1018 Hmp Flavodoxin reducta 77.1 2.4 5.2E-05 35.0 2.9 59 31-91 197-266 (266)
71 cd06221 sulfite_reductase_like 73.4 2.3 5E-05 34.0 1.9 29 84-112 203-240 (253)
72 cd01760 RBD Ubiquitin-like dom 71.2 7.7 0.00017 26.0 3.8 22 71-92 7-28 (72)
73 PRK06222 ferredoxin-NADP(+) re 68.8 3.7 8.1E-05 33.5 2.2 28 86-113 196-229 (281)
74 PRK05802 hypothetical protein; 68.5 3.7 8E-05 34.5 2.1 29 86-114 269-305 (320)
75 PRK05659 sulfur carrier protei 67.1 13 0.00028 23.5 4.1 24 72-97 6-29 (66)
76 PRK12778 putative bifunctional 62.9 6.1 0.00013 36.7 2.6 28 86-113 196-229 (752)
77 KOG0430 Xanthine dehydrogenase 60.0 12 0.00026 37.2 4.1 35 80-114 17-53 (1257)
78 PRK01777 hypothetical protein; 59.5 32 0.0007 24.2 5.3 24 76-99 19-42 (95)
79 smart00455 RBD Raf-like Ras-bi 56.6 26 0.00057 23.1 4.2 22 71-92 7-28 (70)
80 cd06192 DHOD_e_trans_like FAD/ 56.0 6.7 0.00015 30.8 1.4 17 98-114 213-229 (243)
81 PF03990 DUF348: Domain of unk 54.2 37 0.0008 20.1 4.2 31 65-98 2-32 (43)
82 TIGR02911 sulfite_red_B sulfit 52.9 5.6 0.00012 32.1 0.6 27 86-112 205-240 (261)
83 PRK05863 sulfur carrier protei 52.9 37 0.0008 21.7 4.4 28 64-97 2-29 (65)
84 PRK08221 anaerobic sulfite red 51.6 5.8 0.00013 32.1 0.4 29 84-112 205-242 (263)
85 PRK07440 hypothetical protein; 49.6 48 0.001 21.7 4.6 24 72-97 10-33 (70)
86 PRK12779 putative bifunctional 49.3 15 0.00033 35.5 2.9 28 86-113 862-895 (944)
87 PF02196 RBD: Raf-like Ras-bin 47.3 55 0.0012 21.5 4.6 22 71-92 8-29 (71)
88 PRK06944 sulfur carrier protei 41.6 57 0.0012 20.3 3.9 27 64-96 2-28 (65)
89 cd01816 Raf_RBD Ubiquitin doma 39.6 46 0.00099 22.7 3.3 38 72-114 8-45 (74)
90 PF03658 Ub-RnfH: RnfH family 38.9 41 0.0009 23.3 3.1 22 76-97 16-37 (84)
91 PRK12775 putative trifunctiona 36.4 27 0.00059 34.0 2.5 28 86-113 196-229 (1006)
92 cd01818 TIAM1_RBD Ubiquitin do 35.5 48 0.001 22.8 2.9 31 71-101 7-41 (77)
93 PRK13669 hypothetical protein; 34.6 15 0.00032 25.3 0.3 28 92-120 26-57 (78)
94 PF10531 SLBB: SLBB domain; I 34.5 35 0.00077 21.2 2.0 25 76-100 12-36 (59)
95 cd01813 UBP_N UBP ubiquitin pr 34.2 87 0.0019 20.5 4.0 24 64-89 2-25 (74)
96 PRK06083 sulfur carrier protei 34.2 1.1E+02 0.0024 20.9 4.6 31 60-96 16-46 (84)
97 PRK06437 hypothetical protein; 33.5 94 0.002 20.1 4.0 30 65-97 5-34 (67)
98 cd00118 LysM Lysin domain, fou 33.3 43 0.00092 17.7 2.1 21 77-97 2-22 (46)
99 PRK08053 sulfur carrier protei 33.0 1.2E+02 0.0025 19.3 4.4 28 64-97 2-29 (66)
100 PF01476 LysM: LysM domain; I 32.9 43 0.00093 19.0 2.1 19 79-97 2-20 (44)
101 COG2104 ThiS Sulfur transfer p 30.9 1.3E+02 0.0027 19.9 4.3 24 72-97 8-31 (68)
102 PF02824 TGS: TGS domain; Int 30.7 86 0.0019 19.7 3.4 30 71-102 6-35 (60)
103 cd01817 RGS12_RBD Ubiquitin do 28.7 73 0.0016 21.6 2.9 38 71-117 7-48 (73)
104 PRK08364 sulfur carrier protei 28.6 1.2E+02 0.0026 19.6 3.9 23 75-97 15-37 (70)
105 cd01812 BAG1_N Ubiquitin-like 27.2 1.4E+02 0.0031 18.5 4.0 25 64-90 2-26 (71)
106 PRK06549 acetyl-CoA carboxylas 26.2 66 0.0014 23.9 2.6 19 60-82 2-20 (130)
107 TIGR02899 spore_safA spore coa 25.6 45 0.00097 18.4 1.3 18 80-97 1-18 (44)
108 PF04225 OapA: Opacity-associa 24.9 73 0.0016 21.7 2.4 22 76-97 3-24 (85)
109 TIGR01683 thiS thiamine biosyn 23.7 1.3E+02 0.0028 18.8 3.3 24 72-97 4-27 (64)
110 cd00565 ThiS ThiaminS ubiquiti 23.7 1.7E+02 0.0037 18.3 3.9 24 72-97 5-28 (65)
111 cd01794 DC_UbP_C dendritic cel 23.2 1.7E+02 0.0036 18.9 3.8 17 72-88 7-23 (70)
112 cd01802 AN1_N ubiquitin-like d 22.1 2.9E+02 0.0062 19.3 6.2 35 62-97 27-65 (103)
113 PRK10509 bacterioferritin-asso 21.2 41 0.0009 21.8 0.6 31 84-114 12-47 (64)
114 PF07293 DUF1450: Protein of u 21.1 34 0.00073 23.4 0.1 37 83-120 16-57 (78)
115 PF09965 DUF2199: Uncharacteri 21.0 1.9E+02 0.0041 22.0 4.2 33 63-95 116-148 (148)
No 1
>CHL00134 petF ferredoxin; Validated
Probab=99.89 E-value=8.5e-23 Score=145.26 Aligned_cols=83 Identities=30% Similarity=0.554 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeE
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILL 139 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaC 139 (142)
|..|+|+|.+..+|..+.|++++|+|||++|+++||+++|+|+.|.||+|+++|++|++.+.+...|+++++++||+|+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C 80 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence 34589999764466668899999999999999999999999999999999999999999887666699999999999999
Q ss_pred EeC
Q 032345 140 SAL 142 (142)
Q Consensus 140 q~~ 142 (142)
|++
T Consensus 81 ~~~ 83 (99)
T CHL00134 81 VAY 83 (99)
T ss_pred eCE
Confidence 974
No 2
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.87 E-value=6.6e-22 Score=139.90 Aligned_cols=80 Identities=31% Similarity=0.572 Sum_probs=71.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEe
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSA 141 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~ 141 (142)
.|+|+|.+ ++|..++|.+++|+|||++|+++||+++|+|++|.||+|+++|++|++.+.+...|+++++++||+|+||+
T Consensus 2 ~~~v~~~~-~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~ 80 (97)
T TIGR02008 2 TYKVTLVN-PDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80 (97)
T ss_pred eEEEEEEE-CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeC
Confidence 47888854 35667899999999999999999999999999999999999999999988665669999999999999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 81 ~ 81 (97)
T TIGR02008 81 Y 81 (97)
T ss_pred E
Confidence 4
No 3
>PLN03136 Ferredoxin; Provisional
Probab=99.84 E-value=1e-20 Score=144.01 Aligned_cols=83 Identities=34% Similarity=0.540 Sum_probs=73.0
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 58 P~~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
..|..++|+|.. ++| .++|++++|++|||+|+++||++||+|+.|.||+|+++|++|++++.+...|++++.++||+|
T Consensus 50 ~~m~~~~V~l~~-~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~L 127 (148)
T PLN03136 50 TAMATYKVKFIT-PEG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVL 127 (148)
T ss_pred ceeeeEEEEEec-CCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEE
Confidence 445568888853 223 478999999999999999999999999999999999999999999887778999999999999
Q ss_pred eEEeC
Q 032345 138 LLSAL 142 (142)
Q Consensus 138 aCq~~ 142 (142)
+||++
T Consensus 128 aC~a~ 132 (148)
T PLN03136 128 TCVAY 132 (148)
T ss_pred EeEeE
Confidence 99985
No 4
>PTZ00038 ferredoxin; Provisional
Probab=99.83 E-value=2.9e-20 Score=146.57 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=73.6
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 58 P~~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
+.+..|+|+|... +| .++|++++|+|||++|+++||.+|++|+.|.||+|+++|++|++.+.+...|+++++++||+|
T Consensus 91 ~~~~~~~Vt~~~~-~g-~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~L 168 (191)
T PTZ00038 91 RNPLFYNITLQTP-DG-EKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCL 168 (191)
T ss_pred CCCceEEEEEEeC-CC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEE
Confidence 3445689999743 33 278999999999999999999999999999999999999999999887778999999999999
Q ss_pred eEEeC
Q 032345 138 LLSAL 142 (142)
Q Consensus 138 aCq~~ 142 (142)
+||++
T Consensus 169 aCqa~ 173 (191)
T PTZ00038 169 LCTCY 173 (191)
T ss_pred EeeCE
Confidence 99974
No 5
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.82 E-value=3.2e-20 Score=128.30 Aligned_cols=73 Identities=23% Similarity=0.449 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCcEEEEEeCC-CChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPE-DQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSA 141 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~-getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~ 141 (142)
.+|+|.+ +| ++|++++ ++|||+||+++||++||+||.|.||+|++++++|++++.+.. ..+.++||+|+||+
T Consensus 2 ~~v~~~~--~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~ 74 (84)
T PRK10713 2 ARVTLRI--TG--TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCC 74 (84)
T ss_pred CEEEEEe--CC--cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeC
Confidence 3677764 45 6799986 599999999999999999999999999999999999875432 23677899999998
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 75 ~ 75 (84)
T PRK10713 75 R 75 (84)
T ss_pred E
Confidence 5
No 6
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.80 E-value=2e-19 Score=150.25 Aligned_cols=109 Identities=22% Similarity=0.381 Sum_probs=88.1
Q ss_pred Ccceeccccccc---------CcCCCceeeeccCC---CC-----------CCceEEEEEeCCCCcEEE-EEeCCCChHH
Q 032345 32 SSLKCRPRKTVS---------SELQTTAGVNGSYS---PS-----------IPTHKVTVHDRFRGVVHE-FLVPEDQYIL 87 (142)
Q Consensus 32 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~---P~-----------~~~~~Vti~~~~~G~~~~-~~v~~getLL 87 (142)
..|.|.+..+.. ++..+.+|.|.|.. |. ...++|+|.. +|+..+ +.+++|+|||
T Consensus 209 ~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~slL 286 (352)
T TIGR02160 209 EWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTL--DGRSTETSSLSRDESVL 286 (352)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEE--CCceEEEEecCCCCcHH
Confidence 467888876433 33456688898865 31 1346788775 665443 6789999999
Q ss_pred HHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 88 HTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 88 ~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
++|+++||+++|+|+.|.||+|++++++|++.+.+...|+++++++||+|+||++
T Consensus 287 ~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~ 341 (352)
T TIGR02160 287 DAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAY 341 (352)
T ss_pred HHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEE
Confidence 9999999999999999999999999999999987776799999999999999985
No 7
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.78 E-value=6.4e-19 Score=146.72 Aligned_cols=108 Identities=18% Similarity=0.325 Sum_probs=86.8
Q ss_pred CCcceeccccccc---------CcCCCceeeeccCCCC--C--CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 31 PSSLKCRPRKTVS---------SELQTTAGVNGSYSPS--I--PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 31 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~P~--~--~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
...|.|.+..+.. +...+.+|.|.|..|. . ..++|++. ..| +++.+++|+|||++|+++||++
T Consensus 204 ~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~--~~~--~~~~~~~~~~lL~~~~~~gi~~ 279 (332)
T PRK10684 204 RTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAATSGLTFTKL--QPA--REFYAPVGTTLLEALESNKVPV 279 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcCCCceEEEEe--cCC--EEEEeCCCChHHHHHHHcCCCc
Confidence 4568888877432 3344557889997542 1 23445554 345 7899999999999999999999
Q ss_pred CCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 98 PFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 98 ~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
+|+||.|.||+|++++++|++.+.....|+++++++||+|+||++
T Consensus 280 ~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~ 324 (332)
T PRK10684 280 VAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCH 324 (332)
T ss_pred cCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCE
Confidence 999999999999999999999987667899999999999999974
No 8
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.74 E-value=8.3e-18 Score=140.90 Aligned_cols=79 Identities=28% Similarity=0.414 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCC--cccCCCChhhhcCceEEeEE
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKACTILLS 140 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~--~e~~~Ls~~e~~~g~~LaCq 140 (142)
++|+|.+ .+|+...|++++|+|||++|+++|+.++|+|+.|.||+|+++|++|++.+ .+...|++++.++|++|+||
T Consensus 3 ~~v~~~~-~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 81 (340)
T PRK11872 3 HKVALSF-ADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQ 81 (340)
T ss_pred eEEEEEe-cCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEee
Confidence 6788865 35777779999999999999999999999999999999999999999875 34557898899999999999
Q ss_pred eC
Q 032345 141 AL 142 (142)
Q Consensus 141 ~~ 142 (142)
++
T Consensus 82 ~~ 83 (340)
T PRK11872 82 TR 83 (340)
T ss_pred CE
Confidence 74
No 9
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.74 E-value=1.1e-17 Score=112.86 Aligned_cols=70 Identities=26% Similarity=0.530 Sum_probs=63.2
Q ss_pred CcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 73 GVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 73 G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
|..++|.+++|++||++++++|+.++++|+.|.||+|+++|.+|.+.+.....+...+..++++|+||++
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~ 76 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTR 76 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCe
Confidence 4447899999999999999999999999999999999999999999887666677788889999999974
No 10
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.74 E-value=7.9e-18 Score=140.02 Aligned_cols=76 Identities=32% Similarity=0.583 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCc--ccCCCChhhhcCceEEeEE
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP--EALGISAELKSKACTILLS 140 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~--e~~~Ls~~e~~~g~~LaCq 140 (142)
++|+|.. .| ++|++++|+|||++|+++||.++++|+.|.||+|++++++|++.+. +...|++++.++|++|+||
T Consensus 3 ~~v~~~~--~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 78 (339)
T PRK07609 3 FQVTLQP--SG--RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCC 78 (339)
T ss_pred EEEEEec--CC--eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEee
Confidence 5788764 45 6899999999999999999999999999999999999999999875 5677999999999999999
Q ss_pred eC
Q 032345 141 AL 142 (142)
Q Consensus 141 ~~ 142 (142)
++
T Consensus 79 ~~ 80 (339)
T PRK07609 79 AK 80 (339)
T ss_pred CE
Confidence 74
No 11
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.73 E-value=2.9e-18 Score=115.10 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=61.0
Q ss_pred CCcEEEEEeCCCCh-HHHHHHHC-CCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCce-EEeEEeC
Q 032345 72 RGVVHEFLVPEDQY-ILHTAESQ-NITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKAC-TILLSAL 142 (142)
Q Consensus 72 ~G~~~~~~v~~get-LL~aa~~~-GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~-~LaCq~~ 142 (142)
+|+.++|++++|++ ||++|+++ |+.++|+|+.|.||+|+++|++|++ +.....++++++++++ ||+||++
T Consensus 4 ~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~ 76 (78)
T PF00111_consen 4 NGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTR 76 (78)
T ss_dssp TTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSE
T ss_pred CCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEE
Confidence 67778999999999 99999999 9999999998889999999999999 4345567777777776 6999974
No 12
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.71 E-value=1.5e-17 Score=119.02 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=54.1
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecC--ccCCccc---CCCChhhhcCceEEeEEeC
Q 032345 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG--QIKQPEA---LGISAELKSKACTILLSAL 142 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G--~v~~~e~---~~Ls~~e~~~g~~LaCq~~ 142 (142)
..+.++.|+|||++|+++||+++|+||.|.||+|+|+|++| .+.+++. ..|.+...+.++||+||++
T Consensus 15 ~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~ 86 (102)
T COG0633 15 VTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCR 86 (102)
T ss_pred eEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeE
Confidence 45555669999999999999999999999999999999999 6665432 2344345667799999974
No 13
>PRK05713 hypothetical protein; Provisional
Probab=99.69 E-value=5e-17 Score=134.50 Aligned_cols=67 Identities=21% Similarity=0.517 Sum_probs=62.1
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
++|++++|+|||++|+++||.++++|+.|.||+|+++|++|++.......|+++++++|++|+||++
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCR 75 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECE
Confidence 6899999999999999999999999999999999999999998765556789999999999999974
No 14
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.67 E-value=1.9e-16 Score=135.61 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc--ccCCCChhhhcCceE
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP--EALGISAELKSKACT 136 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~--e~~~Ls~~e~~~g~~ 136 (142)
+..++|+|.. .+|..+++++++|+|||+||+++|+++++.|+ .|.||+|+++|++|++.+. +...|++++.++|+|
T Consensus 27 ~~~~~v~v~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~r 105 (405)
T TIGR01941 27 VSSGDITIGI-NDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWR 105 (405)
T ss_pred cccccEEEEE-cCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcE
Confidence 3456777775 35666899999999999999999999999999 5899999999999987653 446788889999999
Q ss_pred EeEEeC
Q 032345 137 ILLSAL 142 (142)
Q Consensus 137 LaCq~~ 142 (142)
|+||+.
T Consensus 106 LaCq~~ 111 (405)
T TIGR01941 106 LSCQVK 111 (405)
T ss_pred EEeeCE
Confidence 999973
No 15
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.66 E-value=2.9e-16 Score=113.51 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=55.1
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCcccC-----CCChh-hhcCceEEeEEeC
Q 032345 76 HEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEAL-----GISAE-LKSKACTILLSAL 142 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~e~~-----~Ls~~-e~~~g~~LaCq~~ 142 (142)
++|++++|+|||++|+++|++|+++|+ .|.||+|+++|++|........ .|++. +..+||||+||++
T Consensus 16 ~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~ 89 (110)
T TIGR02007 16 AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAV 89 (110)
T ss_pred eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEE
Confidence 789999999999999999999999999 6999999999999976554332 23221 3467899999973
No 16
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.65 E-value=2.7e-16 Score=115.15 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=62.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccC--C-----cccCCCC-hhhhcCc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIK--Q-----PEALGIS-AELKSKA 134 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~--~-----~e~~~Ls-~~e~~~g 134 (142)
+|+|.. .+|..+++.+++|+|||++++++|+++++.|+ .|.||+|+++|++++.. . .|...|+ ..+.++|
T Consensus 2 ~V~fi~-~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 2 SVTFVD-KDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred EEEEEc-CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 566643 47888899999999999999999999999999 59999999999654432 1 1334566 4567789
Q ss_pred eEEeEEeC
Q 032345 135 CTILLSAL 142 (142)
Q Consensus 135 ~~LaCq~~ 142 (142)
|||+||+.
T Consensus 81 sRLaCQ~~ 88 (117)
T PLN02593 81 SRLGCQVI 88 (117)
T ss_pred eEecceeE
Confidence 99999973
No 17
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.64 E-value=6.7e-16 Score=132.34 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc--ccCCCChhhhcCceEE
Q 032345 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP--EALGISAELKSKACTI 137 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~--e~~~Ls~~e~~~g~~L 137 (142)
+.++|+|+... +..+++++++|+|||++|+++|++++++|+ .|.||+|+++|++|++... +...|++++.++||||
T Consensus 32 ~~~~~~i~~~~-~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rL 110 (409)
T PRK05464 32 PSGDVTIKING-DPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRL 110 (409)
T ss_pred cCccEEEEEcC-CCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEE
Confidence 34566666522 123789999999999999999999999999 5999999999999987653 4566888899999999
Q ss_pred eEEeC
Q 032345 138 LLSAL 142 (142)
Q Consensus 138 aCq~~ 142 (142)
+||++
T Consensus 111 aCq~~ 115 (409)
T PRK05464 111 SCQVK 115 (409)
T ss_pred EeeCE
Confidence 99973
No 18
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.58 E-value=5e-15 Score=112.23 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CCCCCCCCC-ceecCCceEEEecCccCC------cccCCCC
Q 032345 56 YSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGIS 127 (142)
Q Consensus 56 ~~P~~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI~l~~~Cr-~G~CGtC~v~v~~G~v~~------~e~~~Ls 127 (142)
..|.. ..+|+|.. .+|..+++++++|+|||+++.++ ++.+++.|+ .|.||+|+|+|.+|.... .|...|+
T Consensus 30 ~~~~g-~v~I~~~~-~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~ 107 (143)
T PTZ00490 30 YSTPG-KVKVCVKK-RDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLA 107 (143)
T ss_pred ccCCC-cEEEEEEc-CCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhh
Confidence 34443 36788775 57888899999999999999995 799999999 899999999999875432 2445676
Q ss_pred hh-hhcCceEEeEEeC
Q 032345 128 AE-LKSKACTILLSAL 142 (142)
Q Consensus 128 ~~-e~~~g~~LaCq~~ 142 (142)
.. +.++|+||+||..
T Consensus 108 ~~~~~~~gsRLaCQi~ 123 (143)
T PTZ00490 108 KALDVKETSRLACQVD 123 (143)
T ss_pred ccccCCCCcEEeeeEE
Confidence 55 7889999999973
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.30 E-value=3.7e-12 Score=106.88 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCC--cccCCCChhhhcCceEEeE
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ--PEALGISAELKSKACTILL 139 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~--~e~~~Ls~~e~~~g~~LaC 139 (142)
+.++|... +...+++.+++|.+||.++..+||.+++.|+ .|.||.|+|+|++|.-+. .+...++..+.++||||+|
T Consensus 35 gd~ti~IN-~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsC 113 (410)
T COG2871 35 GDITIKIN-GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSC 113 (410)
T ss_pred CceEEEeC-CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEE
Confidence 33444432 3345789999999999999999999999999 799999999999886553 3556788889999999999
Q ss_pred Ee
Q 032345 140 SA 141 (142)
Q Consensus 140 q~ 141 (142)
|+
T Consensus 114 Q~ 115 (410)
T COG2871 114 QV 115 (410)
T ss_pred Ee
Confidence 96
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=98.98 E-value=3.5e-10 Score=100.19 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc-ccCCCChhhhcCceEEeEEe
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP-EALGISAELKSKACTILLSA 141 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~-e~~~Ls~~e~~~g~~LaCq~ 141 (142)
-|+|.+ +|+ ..+ ++|.|||+||++.|+-+.+.|+ .|.||.|++.|.+|..... ...+ ....++.||||+||+
T Consensus 3 ~v~f~p--sgk--r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~~ 76 (614)
T COG3894 3 LVTFMP--SGK--RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQA 76 (614)
T ss_pred eeEeec--CCC--cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeeeh
Confidence 467765 674 556 9999999999999999999999 7999999999999986542 1111 223456799999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
.
T Consensus 77 ~ 77 (614)
T COG3894 77 Q 77 (614)
T ss_pred h
Confidence 4
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.70 E-value=3.9e-08 Score=79.11 Aligned_cols=48 Identities=27% Similarity=0.494 Sum_probs=41.9
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
|+|+. +| +.|++++|+|||+||+++||.+|+.|. .|.|+.|+|+| +|.
T Consensus 4 v~i~i--dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~ 57 (234)
T PRK07569 4 KTLTI--DD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS 57 (234)
T ss_pred EEEEE--CC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC
Confidence 44443 78 579999999999999999999999998 89999999998 564
No 22
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.69 E-value=2.6e-08 Score=68.50 Aligned_cols=50 Identities=32% Similarity=0.593 Sum_probs=37.5
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCc----------eecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRH----------GCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~----------G~CGtC~v~v~~G~v 118 (142)
.|+|.. || +.+++++|+|||+|++++||.+|+.|.. |.|+.|.|.|- |+.
T Consensus 3 ~v~i~i--dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g~~ 62 (82)
T PF13510_consen 3 MVTITI--DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-GEP 62 (82)
T ss_dssp EEEEEE--TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-SEE
T ss_pred EEEEEE--CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-CCc
Confidence 566666 78 6899999999999999999999999986 99999999984 544
No 23
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=98.65 E-value=3.9e-08 Score=75.34 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc------ccCCCC-hhhhcCc
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP------EALGIS-AELKSKA 134 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~------e~~~Ls-~~e~~~g 134 (142)
.+|++.. ++|....+....|+|||++|.++||+++-+|. .-.|.+|+|.|.+-..+.. |...|+ +-.+.+.
T Consensus 44 i~Itfv~-~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t 122 (159)
T KOG3309|consen 44 IKITFVD-PDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET 122 (159)
T ss_pred EEEEEEC-CCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence 5667665 68988999999999999999999999999998 7899999999976544321 222232 1235677
Q ss_pred eEEeEEe
Q 032345 135 CTILLSA 141 (142)
Q Consensus 135 ~~LaCq~ 141 (142)
.||.||.
T Consensus 123 SRLGCQI 129 (159)
T KOG3309|consen 123 SRLGCQI 129 (159)
T ss_pred cccceEE
Confidence 8999996
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.57 E-value=1e-07 Score=88.73 Aligned_cols=45 Identities=29% Similarity=0.575 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~v 118 (142)
+| +.+++++|+|||+||+++||.+|+.|. .|.|+.|+|+|++|.+
T Consensus 7 dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~ 57 (847)
T PRK08166 7 DG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE 57 (847)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc
Confidence 67 579999999999999999999999998 5999999999998843
No 25
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.21 E-value=1.6e-06 Score=76.03 Aligned_cols=42 Identities=40% Similarity=0.627 Sum_probs=35.7
Q ss_pred EEEEeCCCChHHHHHHH------CCCCCCCCCCceecCCceEEEecCcc
Q 032345 76 HEFLVPEDQYILHTAES------QNITLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~------~GI~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
.++.+++|+|||++|++ .++.++++|+.|.||+|+++| +|+.
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~~ 70 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGEP 70 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCeE
Confidence 35566799999999994 777889999999999999995 7864
No 26
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.18 E-value=4.9e-06 Score=67.13 Aligned_cols=54 Identities=22% Similarity=0.455 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
..+|+|+. +|+.++++++++++||++++++ |+ ...++|+.|.||.|.| +++|..
T Consensus 49 ~~~i~~~V--NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~ 104 (217)
T PRK11433 49 ISPVTLKV--NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR 104 (217)
T ss_pred CceEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence 34566665 7888889999999999999975 43 4789999999999999 568864
No 27
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.99 E-value=2.5e-05 Score=60.38 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=45.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCC-CCCCCCCceecCCceEEEecCcc
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
..|+|.. +|+.++++++++++||+.+++.|+ ....+|+.|.||+|.|.| +|..
T Consensus 7 ~~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~~ 60 (159)
T PRK09908 7 ITIECTI--NGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGTA 60 (159)
T ss_pred eeEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCcE
Confidence 3455554 788889999999999999999887 799999999999999987 6753
No 28
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.96 E-value=2.1e-05 Score=66.03 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=42.9
Q ss_pred CCceEEEEEeCCCCcEEEEEe-CCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 60 IPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v-~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
.|..+|+| || +++++ ++|+|||+||+++||.||+-|- .|.|..|.|.| +|.
T Consensus 66 ~~~~~I~I----DG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~ 123 (297)
T PTZ00305 66 KPRAIMFV----NK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT 123 (297)
T ss_pred CCceEEEE----CC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC
Confidence 44456666 78 68999 9999999999999999999985 48899999998 564
No 29
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.93 E-value=1.3e-05 Score=58.37 Aligned_cols=44 Identities=30% Similarity=0.621 Sum_probs=33.1
Q ss_pred EEEEeCCCChHHHHHHH------CCCCCCCCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVPEDQYILHTAES------QNITLPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~------~GI~l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
+++++.++.|+|+++.. .-+...++|+.|.||+|.++| .|...+
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~~~L 70 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGRPRL 70 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTEEEE
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCceec
Confidence 46778899999999953 357788999999999999997 787654
No 30
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.83 E-value=3e-05 Score=63.05 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=35.4
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
+++++.++.|||+|+..-. +.+.++||.|.||+|.++| .|...+
T Consensus 26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~~~L 75 (239)
T PRK13552 26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGRPTL 75 (239)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCeEhh
Confidence 4566679999999996432 6788999999999999997 677654
No 31
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.80 E-value=5.1e-05 Score=62.30 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=37.5
Q ss_pred EEEEEeCCCChHHHHHHHCCC------CCCCCCCceecCCceEEEecCccCC
Q 032345 75 VHEFLVPEDQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 75 ~~~~~v~~getLL~aa~~~GI------~l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
.+++++.++.|||+++..-+. .+.++|+.|.||+|.+.| .|...+
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~p~l 71 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGRPRL 71 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-CccEec
Confidence 356777899999999998663 688999999999999987 676544
No 32
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.77 E-value=5.3e-05 Score=69.70 Aligned_cols=46 Identities=33% Similarity=0.651 Sum_probs=41.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEec
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKS 115 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~ 115 (142)
+|+| || +++++++|+|||+|++++||.||+-|- .|.|..|.|.|..
T Consensus 3 ~~~I----dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 3 KLKV----DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred EEEE----CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence 4555 78 689999999999999999999999995 6999999999854
No 33
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.72 E-value=8.8e-05 Score=56.72 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=40.0
Q ss_pred CCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+.++++++++++||+.+++. |+ .+..+|+.|.||+|.|.| +|+.
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~~ 54 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGRP 54 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCeE
Confidence 7888889999999999999874 65 688999999999999987 6753
No 34
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.67 E-value=8.2e-05 Score=67.76 Aligned_cols=43 Identities=35% Similarity=0.620 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
|| +.+++++|+|||++|+++|+.+|..|. .|.|+.|.|+| +|.
T Consensus 9 dg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~ 57 (652)
T PRK12814 9 NG--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK 57 (652)
T ss_pred CC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC
Confidence 78 689999999999999999999999997 69999999987 564
No 35
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.60 E-value=0.0001 Score=68.08 Aligned_cols=46 Identities=33% Similarity=0.715 Sum_probs=40.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEec
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKS 115 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~ 115 (142)
+|+| || +++++++|+|||+|++++||+||+-|= .|.|..|.|.+..
T Consensus 3 tI~I----DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg 54 (693)
T COG1034 3 TITI----DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEG 54 (693)
T ss_pred EEEE----CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecC
Confidence 5555 78 689999999999999999999999873 4999999999854
No 36
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.60 E-value=9.3e-05 Score=66.65 Aligned_cols=43 Identities=30% Similarity=0.583 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
|| +++++++|+|||+||+++||.+|+-|. .|.|..|.|.| +|.
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~ 52 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKF 52 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCC
Confidence 67 689999999999999999999999997 79999999998 453
No 37
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.60 E-value=4.3e-05 Score=62.50 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=35.0
Q ss_pred EEEEeCCCChHHHHHHHC-------------CCCCCCCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVPEDQYILHTAESQ-------------NITLPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~-------------GI~l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
+++++.++.|||+++..- -+.+.++||.|.||+|.++| .|...+
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~p~L 81 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGKPRQ 81 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCccch
Confidence 455566899999999733 26788999999999999997 676654
No 38
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.60 E-value=5.5e-05 Score=60.28 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=35.1
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceecCCceEEEecCccC
Q 032345 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIK 119 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~~G~v~ 119 (142)
+++++++++|||+++.+.+ +...++|+.|.||+|.++| .|...
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~~~ 65 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGKPV 65 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCEEh
Confidence 4567789999999998755 4567899999999999986 67543
No 39
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.58 E-value=4.2e-05 Score=63.65 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=34.4
Q ss_pred EEEEeC--C-CChHHHHHHHC------CCCCCCCCCceecCCceEEEecCccCCc
Q 032345 76 HEFLVP--E-DQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQIKQP 121 (142)
Q Consensus 76 ~~~~v~--~-getLL~aa~~~------GI~l~~~Cr~G~CGtC~v~v~~G~v~~~ 121 (142)
.+|+++ + +.|||+++..- -+.+.++||.|.||+|.++| .|...+.
T Consensus 62 ~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~p~LA 115 (276)
T PLN00129 62 QSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGKNTLA 115 (276)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCccccc
Confidence 455555 3 78999999642 25678999999999999997 7876653
No 40
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.51 E-value=0.00014 Score=61.55 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=37.5
Q ss_pred EEEEeCCCChHHHHHHHCCCCCC------CCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVPEDQYILHTAESQNITLP------FACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~------~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
+++++++|.|||++|...++.++ .+|+.|.||+|.++| .|....
T Consensus 21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~~~l 70 (329)
T PRK12577 21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGRSAL 70 (329)
T ss_pred EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCeeec
Confidence 57788899999999999998874 579999999999998 676443
No 41
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.49 E-value=7e-05 Score=60.85 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=31.9
Q ss_pred EEEeC--C-CChHHHHHHHC-----CCCCCCCCCceecCCceEEEecCccCC
Q 032345 77 EFLVP--E-DQYILHTAESQ-----NITLPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 77 ~~~v~--~-getLL~aa~~~-----GI~l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
+|+++ + +.|||+++..- -+...++||.|.||+|.++| .|...+
T Consensus 24 ~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~~~L 74 (235)
T PRK12575 24 RYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGRNGL 74 (235)
T ss_pred EEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCeEcc
Confidence 44444 4 45899998532 35678999999999999997 687554
No 42
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.49 E-value=6.6e-05 Score=61.56 Aligned_cols=41 Identities=24% Similarity=0.558 Sum_probs=33.5
Q ss_pred EEE-eCCCChHHHHHHH----------CCCCCCCCCCceecCCceEEEecCcc
Q 032345 77 EFL-VPEDQYILHTAES----------QNITLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 77 ~~~-v~~getLL~aa~~----------~GI~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+++ +.++.|||+++.. ..+.+.++||.|.||+|.++| .|..
T Consensus 23 ~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p 74 (250)
T PRK07570 23 EVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRP 74 (250)
T ss_pred EecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCcc
Confidence 444 4579999999963 247889999999999999997 7886
No 43
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.48 E-value=0.00014 Score=58.54 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=36.4
Q ss_pred EEEEeC-CCChHHHHHHHCC-CC-----CCCCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVP-EDQYILHTAESQN-IT-----LPFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~-~getLL~aa~~~G-I~-----l~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
++++++ ++.|||+++...+ .. ..++|+.|.||+|.++| +|....
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~~l 70 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKNGL 70 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcCcc
Confidence 567788 9999999999998 33 36899999999999998 686543
No 44
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.42 E-value=0.00029 Score=65.69 Aligned_cols=48 Identities=35% Similarity=0.660 Sum_probs=41.4
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
|+|.. || +++++++|+|||+||.++||.+|+-|- .|.|..|.|.| +|.
T Consensus 5 v~~~i--dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~ 58 (797)
T PRK07860 5 VTLTI--DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ 58 (797)
T ss_pred EEEEE--CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC
Confidence 44443 78 689999999999999999999999996 69999999998 554
No 45
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.34 E-value=0.0006 Score=52.27 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=41.4
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCc
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~ 117 (142)
|+|.. +|+.+++.+.++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 4 i~f~v--NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 4 FRFTV--NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred EEEEE--CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 44444 7888888889999999999874 75 588899999999999987 665
No 46
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.34 E-value=0.00023 Score=57.99 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=33.7
Q ss_pred EEEEeCCCChHHHHHHHC------CCCCCCCCCceecCCceEEEecCccC
Q 032345 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQIK 119 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~------GI~l~~~Cr~G~CGtC~v~v~~G~v~ 119 (142)
+.+++.++.|||+++... .+...++|+.|.||+|.++| .|...
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I-nG~~~ 75 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNVPK 75 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE-CccCh
Confidence 456667999999999542 35567899999999999997 47543
No 47
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.32 E-value=0.0004 Score=65.36 Aligned_cols=43 Identities=33% Similarity=0.631 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCC-----C-ceecCCceEEEecCc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFAC-----R-HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~C-----r-~G~CGtC~v~v~~G~ 117 (142)
|| +++++++|+|||+||.++||.+|+-| . .|.|+.|.|.| +|.
T Consensus 7 dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~ 55 (819)
T PRK08493 7 NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK 55 (819)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE
Confidence 78 68899999999999999999999866 4 59999999987 464
No 48
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.29 E-value=0.00047 Score=63.79 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=38.9
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~ 117 (142)
|| +++++++|+|||+|++++||.+|+-|- .|.|..|.|.| +|.
T Consensus 7 dg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~ 55 (776)
T PRK09129 7 DG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA 55 (776)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC
Confidence 78 689999999999999999999999998 58999999998 453
No 49
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.25 E-value=0.00022 Score=58.18 Aligned_cols=44 Identities=27% Similarity=0.520 Sum_probs=34.5
Q ss_pred EEEeCCCChHHHHHHH------CCCCCCCCCCceecCCceEEEecCccCCc
Q 032345 77 EFLVPEDQYILHTAES------QNITLPFACRHGCCTSCAVRIKSGQIKQP 121 (142)
Q Consensus 77 ~~~v~~getLL~aa~~------~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~ 121 (142)
+++..+|.+||+++.. ..+.+.++||.|.||+|.+.| .|...+.
T Consensus 23 ev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~prLA 72 (234)
T COG0479 23 EVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGKPRLA 72 (234)
T ss_pred EecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCccccc
Confidence 3444589999999963 336788999999999999987 6776653
No 50
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.24 E-value=0.00043 Score=57.46 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=36.5
Q ss_pred EEEEeCCCChHHHHHHHCCCCC------CCCCCceecCCceEEEecCccCC
Q 032345 76 HEFLVPEDQYILHTAESQNITL------PFACRHGCCTSCAVRIKSGQIKQ 120 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l------~~~Cr~G~CGtC~v~v~~G~v~~ 120 (142)
++++++++.|||+++.+.+..+ .++|+.|.||+|.+.| .|....
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~~~l 76 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGEPRL 76 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCcEec
Confidence 5678889999999999976543 5899999999999998 676543
No 51
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.13 E-value=0.0018 Score=50.04 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~-~GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+.+++.+.++.+||+++++ -|. ...++|+.|.||+|.|.+ +|+.
T Consensus 9 NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~~ 56 (156)
T COG2080 9 NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGEA 56 (156)
T ss_pred CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCeE
Confidence 788899999999999999984 444 477999999999999976 6764
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.69 E-value=0.0033 Score=59.02 Aligned_cols=44 Identities=32% Similarity=0.662 Sum_probs=39.0
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~G~v 118 (142)
|| +++++++|+|||++|.++||.+|+-|- -|.|-+|.|. ++|..
T Consensus 11 dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVE-idG~l 60 (978)
T COG3383 11 DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVE-IDGKL 60 (978)
T ss_pred CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEE-ecCce
Confidence 78 689999999999999999999999995 2789999999 47864
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.60 E-value=0.0034 Score=55.58 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEE
Q 032345 72 RGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (142)
Q Consensus 72 ~G~~~~~-~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v 113 (142)
+|+.+++ +++++++||+.++++ |+ ....+|+.|.||+|.|.|
T Consensus 6 Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 6 NGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred CCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 6887888 689999999999974 75 699999999999999988
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.35 E-value=0.0085 Score=57.39 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=41.4
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCC-CCceecCCceEEEecCcc
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFA-CRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~-Cr~G~CGtC~v~v~~G~v 118 (142)
|+|+. +|+.++++++++++||+.+++.|+. ...+ |+.|.||+|.|.| +|+.
T Consensus 3 i~~~v--Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~~ 55 (956)
T PRK09800 3 IHFTL--NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGNI 55 (956)
T ss_pred EEEEE--CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCeE
Confidence 44544 7888899999999999999997764 5566 7899999999987 6753
No 55
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.12 E-value=0.01 Score=56.07 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCCChHHHHHHH-CCC-CCCCCCCceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~-~GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+| ..++++++++||+.+++ .|+ ....+|+.|.||+|.|.| +|+.
T Consensus 6 ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~~ 51 (848)
T TIGR03311 6 NG--REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGKA 51 (848)
T ss_pred CC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCeE
Confidence 67 47889999999999986 476 689999999999999987 6754
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.94 E-value=0.013 Score=56.19 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCC-CCC-CCCceecCCceEEEecCcc
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNIT-LPF-ACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~-l~~-~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+.++++++++++||+.+++.|.. +.. .|+.|.||+|.|.| +|+.
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~~ 51 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGVL 51 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCeE
Confidence 6888889999999999999998864 777 69999999999987 6754
No 57
>PLN00192 aldehyde oxidase
Probab=95.66 E-value=0.028 Score=55.58 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=40.2
Q ss_pred EEEEEeCCCCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEE
Q 032345 64 KVTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~-~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v 113 (142)
.|+|.. +|+.+++ .++++.+||+.+++. |+ ....+|+.|.||.|.|-|
T Consensus 5 ~i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 5 SLVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred eEEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 355554 7887777 589999999999875 75 588999999999999998
No 58
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=94.77 E-value=0.049 Score=53.92 Aligned_cols=43 Identities=23% Similarity=0.440 Sum_probs=36.2
Q ss_pred CCcEE-EEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEe
Q 032345 72 RGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 72 ~G~~~-~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
+|+.+ ...++++++||+.+++. |+ ....+|+.|.||.|.|.|-
T Consensus 8 Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 8 NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 67654 44789999999999874 75 6899999999999999985
No 59
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=92.46 E-value=0.22 Score=45.40 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC------ceecCCceEEEec
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKS 115 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr------~G~CGtC~v~v~~ 115 (142)
.+|.+.. || +.+.|++|.|+|+|.+..|++||--|= .|.|-.|.+.|..
T Consensus 31 ~~ievfv--d~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 31 NKIEVFV--DD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred cceEEEE--CC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 4677665 67 688999999999999999999999994 3888888888754
No 60
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=85.24 E-value=2.3 Score=37.72 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCcEEE-EEeCCCChHHHHHH-HCCC-CCCCCCCceecCCceEEE
Q 032345 63 HKVTVHDRFRGVVHE-FLVPEDQYILHTAE-SQNI-TLPFACRHGCCTSCAVRI 113 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~-~~v~~getLL~aa~-~~GI-~l~~~Cr~G~CGtC~v~v 113 (142)
..|.|.. +|.... -.+++.+||||-++ +.+. --.-+|..|.||.|.|-|
T Consensus 7 ~~irf~l--N~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 7 NTIRFLL--NGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred ceeEEEe--cCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 4566654 554443 35689999999997 5665 366789999999999875
No 61
>PLN02906 xanthine dehydrogenase
Probab=85.06 E-value=1.1 Score=44.72 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=28.1
Q ss_pred CChHHHHHHHCCC-CCCCCCCceecCCceEEEe
Q 032345 83 DQYILHTAESQNI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 83 getLL~aa~~~GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
+++||+.+++.|+ ....+|+.|.||+|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999998775 5889999999999999986
No 62
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=83.61 E-value=2.6 Score=40.57 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=39.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC-----C------CCCceecCCceEEEecC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP-----F------ACRHGCCTSCAVRIKSG 116 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~-----~------~Cr~G~CGtC~v~v~~G 116 (142)
..|+|.+ || +.+++.+|+||..|++.+|+.+- + -|..|.|--|.|.|-.|
T Consensus 11 ~~~~~~~--dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~ 71 (985)
T TIGR01372 11 RPLRFTF--DG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSG 71 (985)
T ss_pred CeEEEEE--CC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCC
Confidence 3577777 78 68999999999999999997643 1 37677788999998544
No 63
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=82.34 E-value=0.82 Score=37.53 Aligned_cols=34 Identities=15% Similarity=0.423 Sum_probs=26.9
Q ss_pred ChHHHHHHHCCCC---------CCCCCCceecCCceEEEecCc
Q 032345 84 QYILHTAESQNIT---------LPFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 84 etLL~aa~~~GI~---------l~~~Cr~G~CGtC~v~v~~G~ 117 (142)
+.+.+.+.+.|++ -.-.|+.|.||.|+++...|.
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~~ 267 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTSI 267 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCcc
Confidence 5577778889985 345899999999999976553
No 64
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=82.06 E-value=1.1 Score=35.79 Aligned_cols=32 Identities=16% Similarity=0.566 Sum_probs=23.8
Q ss_pred hHHHHHHHCCCCC------CCCCCceecCCceEEEecC
Q 032345 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKSG 116 (142)
Q Consensus 85 tLL~aa~~~GI~l------~~~Cr~G~CGtC~v~v~~G 116 (142)
.+.+++.++|++. ...|+.|.||+|++.+..|
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~~ 232 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTETG 232 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCCC
Confidence 3556677788643 3589999999999996543
No 65
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=80.31 E-value=0.86 Score=37.53 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=24.8
Q ss_pred CChHHHHHHHCC------CCCCCCCCceecCCceEEEe
Q 032345 83 DQYILHTAESQN------ITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 83 getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~ 114 (142)
|--+|||+..-. +...-+||.|.||+|...+-
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~ 113 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN 113 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhhccccccceeccC
Confidence 667999996432 23667999999999999873
No 66
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=79.88 E-value=1.2 Score=26.77 Aligned_cols=19 Identities=42% Similarity=1.031 Sum_probs=14.9
Q ss_pred CCCCceecCCceEEEecCc
Q 032345 99 FACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 99 ~~Cr~G~CGtC~v~v~~G~ 117 (142)
-.|+-|.|+.|.+....+.
T Consensus 4 M~CG~G~C~~C~v~~~~~~ 22 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDGD 22 (40)
T ss_dssp -SSSSSSS-TTEEECSSTT
T ss_pred ccCCCcEeCCcEeeeecCC
Confidence 4799999999999998763
No 67
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=78.87 E-value=2.2 Score=33.99 Aligned_cols=36 Identities=28% Similarity=0.598 Sum_probs=27.1
Q ss_pred ChHHHHHHHCCCCC------CCCCCceecCCceEEEec--CccC
Q 032345 84 QYILHTAESQNITL------PFACRHGCCTSCAVRIKS--GQIK 119 (142)
Q Consensus 84 etLL~aa~~~GI~l------~~~Cr~G~CGtC~v~v~~--G~v~ 119 (142)
+.+.+++++.|++. ...|+.|.||.|+....+ |.+.
T Consensus 193 ~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~ 236 (246)
T cd06218 193 KAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKDDEGGYK 236 (246)
T ss_pred HHHHHHHHhcCCCEEEEecccccCccceecccEEEeecCCCccE
Confidence 44666678888873 358999999999999875 5443
No 68
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=78.78 E-value=1.9 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=24.3
Q ss_pred hHHHHHHHCCCCC------CCCCCceecCCceEEEecCc
Q 032345 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 85 tLL~aa~~~GI~l------~~~Cr~G~CGtC~v~v~~G~ 117 (142)
.+.+.+.++|++. .-.|+.|.|++|.++. .|.
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~~ 231 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GGE 231 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CCC
Confidence 3556677888873 3589999999999986 553
No 69
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=77.22 E-value=1.9 Score=33.95 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=24.0
Q ss_pred ChHHHHHHHCCCC------CCCCCCceecCCceEEEe
Q 032345 84 QYILHTAESQNIT------LPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 84 etLL~aa~~~GI~------l~~~Cr~G~CGtC~v~v~ 114 (142)
+.+.+++++.|++ --..|+.|.||+|.+.+.
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 4567777888873 124899999999999974
No 70
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=77.05 E-value=2.4 Score=34.95 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCcceecccc---------cccCcCCCceeeeccCCCC-CCceEEEEE-eCCCCcEEEEEeCCCChHHHHHH
Q 032345 31 PSSLKCRPRK---------TVSSELQTTAGVNGSYSPS-IPTHKVTVH-DRFRGVVHEFLVPEDQYILHTAE 91 (142)
Q Consensus 31 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~P~-~~~~~Vti~-~~~~G~~~~~~v~~getLL~aa~ 91 (142)
...+.|.+.. ..-++..+.+|+|.|.... ......... +..+| +++.+++|+|||++|+
T Consensus 197 r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~~~~~~~~~~~~~~~~~~s~--~~~~~~~g~t~lea~~ 266 (266)
T COG1018 197 REVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFGPMLKDTAALLPFTTLARSG--KEVRVPPGQTLLEAAE 266 (266)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCChhcEEEeecCCCCccccccccchhhcccc--ceEecCCCchHHHhhC
Confidence 3566777765 1256667779999987432 111112221 33456 6889999999999974
No 71
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=73.39 E-value=2.3 Score=34.00 Aligned_cols=29 Identities=14% Similarity=0.484 Sum_probs=23.0
Q ss_pred ChHHHHHHHCCCC---CC------CCCCceecCCceEE
Q 032345 84 QYILHTAESQNIT---LP------FACRHGCCTSCAVR 112 (142)
Q Consensus 84 etLL~aa~~~GI~---l~------~~Cr~G~CGtC~v~ 112 (142)
+.+.+++++.|++ +. --|+.|.||+|++.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 4577888899986 32 36889999999987
No 72
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=71.22 E-value=7.7 Score=26.03 Aligned_cols=22 Identities=9% Similarity=-0.079 Sum_probs=18.9
Q ss_pred CCCcEEEEEeCCCChHHHHHHH
Q 032345 71 FRGVVHEFLVPEDQYILHTAES 92 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa~~ 92 (142)
++|+...+.+.+|+||.|+++.
T Consensus 7 Png~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 7 PNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred cCCCeEEEEECCCCCHHHHHHH
Confidence 4788889999999999998764
No 73
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=68.81 E-value=3.7 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCC------CCCCCceecCCceEEE
Q 032345 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (142)
Q Consensus 86 LL~aa~~~GI~l------~~~Cr~G~CGtC~v~v 113 (142)
+.+.+.+.|+++ .-.|+.|.|+.|.++.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 556677788753 3589999999999975
No 74
>PRK05802 hypothetical protein; Provisional
Probab=68.54 E-value=3.7 Score=34.52 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=22.0
Q ss_pred HHHHHHH--CCCCC------CCCCCceecCCceEEEe
Q 032345 86 ILHTAES--QNITL------PFACRHGCCTSCAVRIK 114 (142)
Q Consensus 86 LL~aa~~--~GI~l------~~~Cr~G~CGtC~v~v~ 114 (142)
+.+.+.+ .||.+ .-.|+.|.||.|.++..
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~~ 305 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRYG 305 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEEC
Confidence 4455555 67765 56899999999999964
No 75
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=67.11 E-value=13 Score=23.55 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=20.2
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| +.++++++.||.++++..|++.
T Consensus 6 NG--~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 6 NG--EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred CC--eEEEcCCCCCHHHHHHhcCCCC
Confidence 67 5678899999999999998764
No 76
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=62.92 E-value=6.1 Score=36.74 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCC------CCCCCceecCCceEEE
Q 032345 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (142)
Q Consensus 86 LL~aa~~~GI~l------~~~Cr~G~CGtC~v~v 113 (142)
+.+.+.+.|++. .-.|+.|.||.|.++.
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 556777889886 6799999999999964
No 77
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=60.05 E-value=12 Score=37.23 Aligned_cols=35 Identities=20% Similarity=0.519 Sum_probs=28.0
Q ss_pred eCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEe
Q 032345 80 VPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 80 v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
++++.||+.-++.. ++ ...++|+.|.||+|.|-|-
T Consensus 17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls 53 (1257)
T KOG0430|consen 17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLS 53 (1257)
T ss_pred CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEe
Confidence 57888899887543 33 4788999999999999874
No 78
>PRK01777 hypothetical protein; Validated
Probab=59.51 E-value=32 Score=24.18 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITLPF 99 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~ 99 (142)
..+++++|.|+-+++.+.||...+
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~ 42 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELR 42 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccC
Confidence 467889999999999999996554
No 79
>smart00455 RBD Raf-like Ras-binding domain.
Probab=56.63 E-value=26 Score=23.09 Aligned_cols=22 Identities=5% Similarity=-0.132 Sum_probs=18.5
Q ss_pred CCCcEEEEEeCCCChHHHHHHH
Q 032345 71 FRGVVHEFLVPEDQYILHTAES 92 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa~~ 92 (142)
++|+...+.+.+|+||.|+++.
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHH
Confidence 4788888999999999998753
No 80
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=55.98 E-value=6.7 Score=30.84 Aligned_cols=17 Identities=35% Similarity=1.042 Sum_probs=14.5
Q ss_pred CCCCCceecCCceEEEe
Q 032345 98 PFACRHGCCTSCAVRIK 114 (142)
Q Consensus 98 ~~~Cr~G~CGtC~v~v~ 114 (142)
.-.|+.|.||+|.+...
T Consensus 213 ~m~Cg~G~C~~C~~~~~ 229 (243)
T cd06192 213 PMCCGIGICGACTIETK 229 (243)
T ss_pred cccCccccccceEEEeC
Confidence 35899999999999864
No 81
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=54.25 E-value=37 Score=20.07 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=23.0
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP 98 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~ 98 (142)
|+|.. +|+.+.+. -...|+=+++.++||.+.
T Consensus 2 Vtv~~--dG~~~~v~-T~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 2 VTVTV--DGKEKTVY-TTASTVGDALKELGITLG 32 (43)
T ss_pred EEEEE--CCEEEEEE-eCCCCHHHHHHhCCCCCC
Confidence 55554 78766554 567899999999999874
No 82
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=52.95 E-value=5.6 Score=32.08 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCCC---------CCCCceecCCceEE
Q 032345 86 ILHTAESQNITLP---------FACRHGCCTSCAVR 112 (142)
Q Consensus 86 LL~aa~~~GI~l~---------~~Cr~G~CGtC~v~ 112 (142)
+.+.+.+.|++-. -.|+.|.||.|++.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 5566777887522 37999999999776
No 83
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=52.92 E-value=37 Score=21.71 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+|+| +| ..++++++.||.+.++..|++.
T Consensus 2 ~i~v----NG--~~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV----NE--EQVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE----CC--EEEEcCCCCcHHHHHHHcCCCC
Confidence 4566 57 4667789999999999998864
No 84
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=51.64 E-value=5.8 Score=32.05 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=22.2
Q ss_pred ChHHHHHHHCCCCC---------CCCCCceecCCceEE
Q 032345 84 QYILHTAESQNITL---------PFACRHGCCTSCAVR 112 (142)
Q Consensus 84 etLL~aa~~~GI~l---------~~~Cr~G~CGtC~v~ 112 (142)
+.+.+.+++.|++- .-.|+.|.||+|++.
T Consensus 205 ~~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 205 KFTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 34667777888862 247999999999976
No 85
>PRK07440 hypothetical protein; Provisional
Probab=49.61 E-value=48 Score=21.68 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| +.++++++.||.+.+.+-|++.
T Consensus 10 NG--~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 10 NG--ETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred CC--EEEEcCCCCCHHHHHHHcCCCC
Confidence 67 4678899999999999888754
No 86
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.26 E-value=15 Score=35.47 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCC------CCCCCceecCCceEEE
Q 032345 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (142)
Q Consensus 86 LL~aa~~~GI~l------~~~Cr~G~CGtC~v~v 113 (142)
+.+.+.+.|++. ...|+-|.||.|.+.+
T Consensus 862 v~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 556677888864 5689999999999974
No 87
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=47.32 E-value=55 Score=21.50 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=17.7
Q ss_pred CCCcEEEEEeCCCChHHHHHHH
Q 032345 71 FRGVVHEFLVPEDQYILHTAES 92 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa~~ 92 (142)
++|+...+.+.+|+||-|++..
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHH
T ss_pred CCCCEEEEEEcCCCCHHHHHHH
Confidence 4788888999999999998754
No 88
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=41.60 E-value=57 Score=20.35 Aligned_cols=27 Identities=4% Similarity=0.203 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~ 96 (142)
+|+| +| ..++++++.||.+++...|+.
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQL----NQ--QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEE----CC--EEEECCCCCcHHHHHHhhCCC
Confidence 4555 57 577889999999999988875
No 89
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=39.59 E-value=46 Score=22.74 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEe
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
+.+...+++.+|+++-||+.++ .... +=..-.|.|...
T Consensus 8 nqQrT~V~vrpG~tl~daL~Ka-Lk~R----~l~pe~C~V~~~ 45 (74)
T cd01816 8 NKQRTVVNVRPGMTLRDALAKA-LKVR----GLQPECCAVFRL 45 (74)
T ss_pred CCCeEEEEecCCcCHHHHHHHH-HHHc----CCChhHeEEEEc
Confidence 4455678999999998887654 1111 112344667665
No 90
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=38.91 E-value=41 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.2
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l 97 (142)
.++++++|.|+.+|+++.|+.-
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~ 37 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILE 37 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHH
T ss_pred EEEECCCcCcHHHHHHHcCchh
Confidence 4678999999999999999853
No 91
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=36.43 E-value=27 Score=34.02 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=20.9
Q ss_pred HHHHHHHCCCC------CCCCCCceecCCceEEE
Q 032345 86 ILHTAESQNIT------LPFACRHGCCTSCAVRI 113 (142)
Q Consensus 86 LL~aa~~~GI~------l~~~Cr~G~CGtC~v~v 113 (142)
+.+.+...||+ -...|+.|.||.|++.+
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 44555677873 23689999999999975
No 92
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=35.45 E-value=48 Score=22.81 Aligned_cols=31 Identities=6% Similarity=-0.193 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCChHHHHHHH----CCCCCCCCC
Q 032345 71 FRGVVHEFLVPEDQYILHTAES----QNITLPFAC 101 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa~~----~GI~l~~~C 101 (142)
++|+...+.+.+|.|++|.++. .|++...-|
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhe
Confidence 3677788899999999998864 445444433
No 93
>PRK13669 hypothetical protein; Provisional
Probab=34.63 E-value=15 Score=25.31 Aligned_cols=28 Identities=25% Similarity=0.755 Sum_probs=19.8
Q ss_pred HCCCC-CCCCCCceecCCceEE---EecCccCC
Q 032345 92 SQNIT-LPFACRHGCCTSCAVR---IKSGQIKQ 120 (142)
Q Consensus 92 ~~GI~-l~~~Cr~G~CGtC~v~---v~~G~v~~ 120 (142)
.-+++ +.++| .+.||.|+.+ ++.|++-.
T Consensus 26 dP~~dVie~gC-ls~CG~C~~~~FAlVng~~V~ 57 (78)
T PRK13669 26 DPNLDVLEYGC-LGYCGICSEGLFALVNGEVVE 57 (78)
T ss_pred CCCceEEEcch-hhhCcCcccCceEEECCeEee
Confidence 34455 77999 4589999887 57777543
No 94
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=34.47 E-value=35 Score=21.23 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=19.6
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITLPFA 100 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~~ 100 (142)
-.|+++.+.||.+++..+|-..+.+
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~a 36 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPRA 36 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTTB
T ss_pred EEEEECCCCcHHHHHHHhCCCCCCc
Confidence 3788899999999999998766553
No 95
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=34.24 E-value=87 Score=20.52 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHH
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHT 89 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~a 89 (142)
+|+|.. .|+.+.+++++++|+.+.
T Consensus 2 ~i~vk~--~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVKW--GGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEEE--CCEEEEEEECCCCCHHHH
Confidence 466765 688889999999999764
No 96
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=34.23 E-value=1.1e+02 Score=20.93 Aligned_cols=31 Identities=3% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~ 96 (142)
+...+|+| +| +.++++++-||.+.+...+++
T Consensus 16 ~~~m~I~V----NG--~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI----ND--QSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE----CC--eEEEcCCCCcHHHHHHHcCCC
Confidence 33446666 67 467788999999999887764
No 97
>PRK06437 hypothetical protein; Provisional
Probab=33.46 E-value=94 Score=20.05 Aligned_cols=30 Identities=3% Similarity=0.066 Sum_probs=23.8
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
|+|. .++.++++++++.|+.+.+.+-|++.
T Consensus 5 ~~v~---g~~~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 5 IRVK---GHINKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred EEec---CCcceEEEcCCCCcHHHHHHHcCCCC
Confidence 5563 35567889999999999999998863
No 98
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=33.29 E-value=43 Score=17.70 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.7
Q ss_pred EEEeCCCChHHHHHHHCCCCC
Q 032345 77 EFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 77 ~~~v~~getLL~aa~~~GI~l 97 (142)
.+.+..|+|+-..+.+.|+.+
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 356788999999998887764
No 99
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=32.99 E-value=1.2e+02 Score=19.28 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+|+| +| +.++++++.||.+.+...++..
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILF----ND--QPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEE----CC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 4555 57 5778899999999998877754
No 100
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=32.90 E-value=43 Score=18.97 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=12.7
Q ss_pred EeCCCChHHHHHHHCCCCC
Q 032345 79 LVPEDQYILHTAESQNITL 97 (142)
Q Consensus 79 ~v~~getLL~aa~~~GI~l 97 (142)
.|.+|+|+-..|.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 5789999999999998764
No 101
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=30.93 E-value=1.3e+02 Score=19.89 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| +.++++++.|+-+.+.+-|+..
T Consensus 8 ng--~~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 8 NG--KEVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred CC--EEEEcCCCCcHHHHHHHhCCCC
Confidence 56 6788999999999999999886
No 102
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=30.66 E-value=86 Score=19.70 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC
Q 032345 71 FRGVVHEFLVPEDQYILHTAESQNITLPFACR 102 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr 102 (142)
++|. ..+++.|.|.+|+|..-+-.+...+.
T Consensus 6 pdG~--~~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 6 PDGS--IKELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp TTSC--EEEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred CCCC--eeeCCCCCCHHHHHHHHCHHHHhhee
Confidence 4785 55689999999999987766655553
No 103
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=28.73 E-value=73 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCCcEEEEEeCCCChHHHHH----HHCCCCCCCCCCceecCCceEEEecCc
Q 032345 71 FRGVVHEFLVPEDQYILHTA----ESQNITLPFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 71 ~~G~~~~~~v~~getLL~aa----~~~GI~l~~~Cr~G~CGtC~v~v~~G~ 117 (142)
+||+...+.+.+|+||-|++ +..|+.. ..|.+.+..|+
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~~---------~~~~vf~~g~~ 48 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGINY---------AAVDLFLVGGD 48 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCCh---------hHEEEEEecCC
Confidence 47888889999999987766 4555552 33667776544
No 104
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=28.61 E-value=1.2e+02 Score=19.56 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=19.2
Q ss_pred EEEEEeCCCChHHHHHHHCCCCC
Q 032345 75 VHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 75 ~~~~~v~~getLL~aa~~~GI~l 97 (142)
..+++++++.|+.+.+.+-|++.
T Consensus 15 ~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEcCCCCcHHHHHHHcCCCC
Confidence 45788899999999999988764
No 105
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=27.20 E-value=1.4e+02 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHH
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTA 90 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa 90 (142)
+|+|+. .|...++++.+++|+-+.-
T Consensus 2 ~i~vk~--~g~~~~i~v~~~~tv~~lK 26 (71)
T cd01812 2 RVRVKH--GGESHDLSISSQATFGDLK 26 (71)
T ss_pred EEEEEE--CCEEEEEEECCCCcHHHHH
Confidence 577776 4777889999999987743
No 106
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.17 E-value=66 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCC
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPE 82 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~ 82 (142)
++.|+||| +|+.+.+++++
T Consensus 2 mk~~~itv----ng~~y~V~vee 20 (130)
T PRK06549 2 LRKFKITI----DGKEYLVEMEE 20 (130)
T ss_pred CceEEEEE----CCEEEEEEEEE
Confidence 45688888 68888888776
No 107
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=25.57 E-value=45 Score=18.38 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.3
Q ss_pred eCCCChHHHHHHHCCCCC
Q 032345 80 VPEDQYILHTAESQNITL 97 (142)
Q Consensus 80 v~~getLL~aa~~~GI~l 97 (142)
+.+|+||.+.+.+.|+.+
T Consensus 1 v~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCCHHHHHHHHCcCH
Confidence 467899999999887764
No 108
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=24.88 E-value=73 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=13.4
Q ss_pred EEEEeCCCChHHHHHHHCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l 97 (142)
+++.|+.|+||-....+.|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 4678999999999999999874
No 109
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.71 E-value=1.3e+02 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| +.++++++.||.+.+..-+++.
T Consensus 4 Ng--~~~~~~~~~tv~~ll~~l~~~~ 27 (64)
T TIGR01683 4 NG--EPVEVEDGLTLAALLESLGLDP 27 (64)
T ss_pred CC--eEEEcCCCCcHHHHHHHcCCCC
Confidence 56 5778899999999999988763
No 110
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.69 E-value=1.7e+02 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.7
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| +.++++++.|+-+.++..+++.
T Consensus 5 Ng--~~~~~~~~~tv~~ll~~l~~~~ 28 (65)
T cd00565 5 NG--EPREVEEGATLAELLEELGLDP 28 (65)
T ss_pred CC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 56 5778899999999999988763
No 111
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=23.18 E-value=1.7e+02 Score=18.91 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=15.1
Q ss_pred CCcEEEEEeCCCChHHH
Q 032345 72 RGVVHEFLVPEDQYILH 88 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~ 88 (142)
+|....+++.+.+|+.+
T Consensus 7 ~G~~~~l~v~~~~TV~~ 23 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQ 23 (70)
T ss_pred CCCEEEEEECCcChHHH
Confidence 58888899999999988
No 112
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=22.11 E-value=2.9e+02 Score=19.35 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=24.4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHH----HHHHCCCCC
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILH----TAESQNITL 97 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~----aa~~~GI~l 97 (142)
..+|.|+. .+|+...+++.+.+||-+ .+.+.||+.
T Consensus 27 ~M~I~Vk~-l~G~~~~leV~~~~TV~~lK~kI~~~~gip~ 65 (103)
T cd01802 27 TMELFIET-LTGTCFELRVSPFETVISVKAKIQRLEGIPV 65 (103)
T ss_pred CEEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 35677765 468888999999999987 334445443
No 113
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=21.25 E-value=41 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=19.7
Q ss_pred ChHHHHHHHCCCC----CCCCCC-ceecCCceEEEe
Q 032345 84 QYILHTAESQNIT----LPFACR-HGCCTSCAVRIK 114 (142)
Q Consensus 84 etLL~aa~~~GI~----l~~~Cr-~G~CGtC~v~v~ 114 (142)
..|-++..++|.. +....+ .+.||+|.-.+.
T Consensus 12 ~~I~~ai~~~g~~s~~~l~~~~~~g~~CG~C~~~i~ 47 (64)
T PRK10509 12 KKIRQAVRQFHPQSFQQLRKFVPVGNQCGKCIRAAR 47 (64)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcCCCCCccchHHHHH
Confidence 4577777766653 444455 567999986653
No 114
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.12 E-value=34 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.602 Sum_probs=24.4
Q ss_pred CChHHHHHHH-CCCC-CCCCCCceecCCceEE---EecCccCC
Q 032345 83 DQYILHTAES-QNIT-LPFACRHGCCTSCAVR---IKSGQIKQ 120 (142)
Q Consensus 83 getLL~aa~~-~GI~-l~~~Cr~G~CGtC~v~---v~~G~v~~ 120 (142)
.+.+++.+++ -+++ +.++| .|.||.|+.+ ++.|++-.
T Consensus 16 ~~~~~~~Le~~p~~~Vie~gC-l~~Cg~C~~~pFAlVnG~~V~ 57 (78)
T PF07293_consen 16 TDQVYEKLEKDPDIDVIEYGC-LSYCGPCAKKPFALVNGEIVA 57 (78)
T ss_pred hHHHHHHHhcCCCccEEEcCh-hhhCcCCCCCccEEECCEEEe
Confidence 3456777653 3344 36999 5689999987 56777543
No 115
>PF09965 DUF2199: Uncharacterized protein conserved in bacteria (DUF2199); InterPro: IPR018697 This domain has no known function.
Probab=21.03 E-value=1.9e+02 Score=21.99 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNI 95 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI 95 (142)
.++.|+....|+.=.+...++..-|....++||
T Consensus 116 l~~~V~~r~~g~rP~i~l~~~dHpL~~dq~~GI 148 (148)
T PF09965_consen 116 LKTNVHTRPDGQRPEIELHETDHPLARDQRNGI 148 (148)
T ss_pred ceEEEEECCCCCCCEEEecCCCCccHHHHhccC
Confidence 455666655676557888888899999999987
Done!