Query 032345
Match_columns 142
No_of_seqs 181 out of 1335
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iue_A Ferredoxin; electron tr 99.9 1.4E-21 4.9E-26 136.4 7.8 79 62-142 2-80 (98)
2 1frd_A Heterocyst [2Fe-2S] fer 99.8 2E-21 6.7E-26 135.3 8.0 81 62-142 2-82 (98)
3 1frr_A Ferredoxin I; electron 99.8 1.7E-21 5.7E-26 134.6 6.9 78 63-142 2-79 (95)
4 1a70_A Ferredoxin; iron-sulfur 99.8 2.8E-21 9.6E-26 134.7 7.3 79 62-142 2-80 (97)
5 1czp_A Ferredoxin I; [2Fe-2S] 99.8 3.9E-21 1.3E-25 134.1 8.0 80 62-142 2-82 (98)
6 1awd_A Ferredoxin; electron tr 99.8 4.3E-21 1.5E-25 133.0 7.6 78 63-142 1-78 (94)
7 1wri_A Ferredoxin II, ferredox 99.8 9.1E-21 3.1E-25 131.2 6.9 77 63-142 2-78 (93)
8 1jq4_A Methane monooxygenase c 99.8 4.6E-21 1.6E-25 133.6 4.6 80 62-142 4-85 (98)
9 2pia_A Phthalate dioxygenase r 99.8 1.6E-20 5.4E-25 153.6 6.4 107 30-142 193-311 (321)
10 3lxf_A Ferredoxin; iron, iron- 99.8 3.9E-20 1.3E-24 131.0 4.0 78 64-142 2-88 (104)
11 2bt6_A Adrenodoxin 1; rutheniu 99.8 5.3E-20 1.8E-24 130.4 4.0 80 62-142 6-95 (108)
12 1xlq_A Putidaredoxin, PDX; [2F 99.8 8.2E-20 2.8E-24 128.8 4.7 78 64-142 2-89 (106)
13 2y5c_A Adrenodoxin-like protei 99.8 7E-20 2.4E-24 130.1 3.7 80 62-142 5-92 (109)
14 2wlb_A ETP1-FD, electron trans 99.8 1.4E-19 4.7E-24 127.1 5.0 80 62-142 3-90 (103)
15 1uwm_A Ferredoxin VI, FDVI; el 99.8 1.1E-19 3.8E-24 128.1 3.7 78 64-142 2-89 (106)
16 3hui_A Ferredoxin; cytochrome 99.8 1.7E-19 5.8E-24 132.5 4.7 82 60-142 19-109 (126)
17 3ah7_A [2Fe-2S]ferredoxin; [2F 99.8 1.6E-19 5.5E-24 128.8 4.2 79 63-142 2-90 (113)
18 1doi_A 2Fe-2S ferredoxin; halo 99.8 1.4E-19 4.7E-24 133.1 3.4 77 63-142 28-105 (128)
19 1b9r_A Protein (terpredoxin); 99.8 3E-20 1E-24 130.9 -0.6 78 64-142 2-89 (105)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 3.8E-19 1.3E-23 123.1 4.8 75 64-142 2-81 (93)
21 1krh_A Benzoate 1,2-dioxygenas 99.7 1.5E-18 5.3E-23 141.9 7.4 81 61-142 2-86 (338)
22 1i7h_A Ferredoxin; 2Fe-2S,elec 99.7 4E-18 1.4E-22 121.3 5.0 78 64-142 3-90 (111)
23 3zyy_X Iron-sulfur cluster bin 99.7 2.2E-17 7.5E-22 147.9 6.4 78 61-142 2-80 (631)
24 3n9z_C Adrenodoxin; cytochrome 99.6 3.1E-17 1.1E-21 119.8 -2.4 80 62-142 5-94 (123)
25 1t3q_A Quinoline 2-oxidoreduct 98.7 2.6E-08 8.9E-13 75.7 7.8 52 64-118 11-64 (168)
26 3hrd_D Nicotinate dehydrogenas 98.4 1.1E-06 3.8E-11 66.7 7.4 51 64-117 5-57 (160)
27 1rm6_C 4-hydroxybenzoyl-COA re 98.4 1E-06 3.5E-11 66.6 7.2 51 64-117 4-56 (161)
28 3i9v_3 NADH-quinone oxidoreduc 98.3 4.3E-07 1.5E-11 82.5 6.0 41 72-114 7-53 (783)
29 1ffv_A CUTS, iron-sulfur prote 98.3 1.3E-06 4.4E-11 66.4 7.5 52 64-118 5-58 (163)
30 1n62_A Carbon monoxide dehydro 98.3 1.3E-06 4.5E-11 66.5 7.5 52 64-118 5-58 (166)
31 2bs2_B Quinol-fumarate reducta 98.3 3E-07 1E-11 72.3 3.5 43 76-119 26-74 (241)
32 1kf6_B Fumarate reductase iron 98.2 6.1E-07 2.1E-11 70.5 3.8 42 76-118 26-73 (243)
33 3c8y_A Iron hydrogenase 1; dit 98.0 1.1E-05 3.8E-10 71.1 6.8 48 65-117 2-56 (574)
34 2h88_B Succinate dehydrogenase 97.9 6.2E-06 2.1E-10 65.4 3.1 42 76-118 33-81 (252)
35 2wdq_B Succinate dehydrogenase 97.8 1.1E-05 3.8E-10 63.0 3.9 43 76-119 23-72 (238)
36 2w3s_A Xanthine dehydrogenase; 97.3 0.00029 9.8E-09 60.9 6.3 47 65-113 3-51 (462)
37 3nvw_A Xanthine dehydrogenase/ 97.3 0.00023 7.8E-09 54.1 4.6 48 65-114 5-55 (164)
38 3vr8_B Iron-sulfur subunit of 97.2 0.0003 1E-08 57.4 4.6 42 76-118 57-105 (282)
39 1vlb_A Aldehyde oxidoreductase 97.2 0.00068 2.3E-08 62.9 7.4 52 64-118 3-56 (907)
40 1dgj_A Aldehyde oxidoreductase 97.0 0.00079 2.7E-08 62.4 6.0 52 64-118 3-56 (907)
41 1y56_A Hypothetical protein PH 95.9 0.011 3.7E-07 50.3 5.6 48 64-117 15-69 (493)
42 3unc_A Xanthine dehydrogenase/ 95.0 0.027 9.2E-07 54.3 5.6 49 64-114 5-56 (1332)
43 3zyv_A AOH1; oxidoreductase, m 93.0 0.12 4.2E-06 49.7 5.8 52 61-114 6-60 (1335)
44 2gag_A Heterotetrameric sarcos 89.6 0.64 2.2E-05 42.9 6.6 48 63-114 21-79 (965)
45 1ep3_B Dihydroorotate dehydrog 67.8 2.2 7.6E-05 32.6 1.8 29 85-114 205-239 (262)
46 2k02_A Ferrous iron transport 61.8 3.2 0.00011 27.9 1.5 26 85-110 35-65 (87)
47 1wxm_A A-RAF proto-oncogene se 61.5 10 0.00035 25.6 3.9 42 63-114 8-53 (86)
48 3u7z_A Putative metal binding 58.4 17 0.00057 25.0 4.7 34 60-94 6-40 (101)
49 1c1y_B Proto-onkogene serine/t 55.9 15 0.00052 24.2 3.9 45 64-114 3-47 (77)
50 1xn7_A Hypothetical protein YH 53.6 5.4 0.00018 26.0 1.4 26 86-111 36-66 (78)
51 1rrb_A RAF-1 RBD, RAF proto-on 49.3 16 0.00054 25.6 3.4 42 63-114 19-64 (107)
52 3ny5_A Serine/threonine-protei 48.4 25 0.00085 24.2 4.2 46 63-114 14-59 (96)
53 2l05_A Serine/threonine-protei 47.8 23 0.00079 24.3 3.9 42 63-114 18-63 (95)
54 1wia_A Hypothetical ubiquitin- 44.2 52 0.0018 21.0 5.3 33 58-91 3-35 (95)
55 1v86_A DNA segment, CHR 7, way 43.2 59 0.002 21.1 5.4 35 61-97 16-54 (95)
56 2l32_A Small archaeal modifier 43.1 52 0.0018 20.8 5.0 34 64-98 2-35 (74)
57 1e0g_A Membrane-bound lytic mu 41.9 15 0.00053 20.3 2.0 21 77-97 4-24 (48)
58 1uh6_A Ubiquitin-like 5; beta- 41.7 38 0.0013 23.0 4.3 39 59-98 25-67 (100)
59 3plu_A Ubiquitin-like modifier 36.4 48 0.0016 22.3 4.1 66 60-137 19-88 (93)
60 3phx_B Ubiquitin-like protein 35.9 64 0.0022 19.6 4.5 65 62-138 4-72 (79)
61 2lg4_A Aurelin; antimicrobial 41.6 7.9 0.00027 22.5 0.0 18 91-109 23-40 (40)
62 3v6c_B Ubiquitin; structural g 34.5 86 0.003 19.7 5.2 67 60-138 15-85 (91)
63 2klc_A Ubiquilin-1; ubiquitin- 33.4 67 0.0023 21.0 4.5 41 54-96 17-61 (101)
64 2gow_A HCG-1 protein, ubiquiti 31.7 97 0.0033 21.6 5.3 28 61-89 16-43 (125)
65 1v5t_A 8430435I17RIK protein; 30.9 52 0.0018 21.0 3.5 34 62-97 7-45 (90)
66 2uyz_B Small ubiquitin-related 29.8 83 0.0028 19.0 4.3 65 62-138 3-71 (79)
67 3kwl_A Uncharacterized protein 29.7 44 0.0015 28.7 3.8 38 76-121 45-82 (514)
68 2k5p_A THis protein, thiamine- 28.1 54 0.0018 20.9 3.2 28 64-97 2-31 (78)
69 2djp_A Hypothetical protein SB 27.1 26 0.00089 21.7 1.4 23 76-98 16-38 (77)
70 4dwf_A HLA-B-associated transc 26.7 1.2E+02 0.004 18.8 4.7 35 62-97 5-43 (90)
71 2kmm_A Guanosine-3',5'-BIS(dip 26.6 68 0.0023 19.2 3.4 24 72-97 9-32 (73)
72 2hj8_A Interferon-induced 17 k 25.3 1.2E+02 0.004 19.0 4.5 66 62-139 4-73 (88)
73 2wyq_A HHR23A, UV excision rep 24.7 1.2E+02 0.0042 18.4 4.8 26 63-89 6-31 (85)
74 2al3_A TUG long isoform; TUG U 24.5 61 0.0021 21.8 3.0 32 64-96 11-46 (90)
75 4hcn_B Polyubiquitin, ubiquiti 24.5 1.1E+02 0.0037 19.7 4.2 65 62-138 22-90 (98)
76 2kl0_A Putative thiamin biosyn 23.7 94 0.0032 19.4 3.7 23 72-97 6-28 (73)
77 2bwf_A Ubiquitin-like protein 23.4 1.1E+02 0.0037 18.1 3.9 32 63-96 5-40 (77)
78 3hvz_A Uncharacterized protein 22.6 88 0.003 20.0 3.4 35 64-101 7-41 (78)
79 3u30_A Ubiquitin, linear DI-ub 22.5 1.2E+02 0.0042 21.3 4.6 37 60-97 18-58 (172)
80 2hj1_A Hypothetical protein; s 22.0 58 0.002 21.9 2.5 23 76-98 28-50 (97)
81 1wgh_A Ubiquitin-like 3, HCG-1 21.9 1.6E+02 0.0054 20.2 4.8 27 62-89 16-42 (116)
82 1tyg_B YJBS; alpha beta barrel 20.9 91 0.0031 20.4 3.3 27 64-96 22-49 (87)
83 1v2y_A 3300001G02RIK protein; 20.8 1.7E+02 0.0059 19.6 4.8 26 62-88 7-32 (105)
84 1wgg_A Ubiquitin carboxyl-term 20.8 1.5E+02 0.005 19.2 4.3 35 62-98 7-46 (96)
85 4eew_A Large proline-rich prot 20.7 1.6E+02 0.0054 18.1 4.5 35 62-97 17-55 (88)
No 1
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.85 E-value=1.4e-21 Score=136.44 Aligned_cols=79 Identities=27% Similarity=0.557 Sum_probs=71.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEe
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSA 141 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~ 141 (142)
.++|+|.. +|..++|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+.+...|+++++++||+|+||+
T Consensus 2 ~~~v~~~~--~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (98)
T 1iue_A 2 FYNITLRT--NDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTC 79 (98)
T ss_dssp EEEEEEEE--TTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred cEEEEEEe--CCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeEC
Confidence 47888875 3435789999999999999999999999999999999999999999988888889999999999999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 80 ~ 80 (98)
T 1iue_A 80 Y 80 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 2
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.85 E-value=2e-21 Score=135.27 Aligned_cols=81 Identities=25% Similarity=0.510 Sum_probs=71.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEe
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSA 141 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~ 141 (142)
.++|+|.....+..++|++++|+|||++|+++||.++++|+.|.||+|+++|++|++.+.+...|++++.++|++|+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47888875211125899999999999999999999999999999999999999999988887889999999999999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 82 ~ 82 (98)
T 1frd_A 82 Y 82 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 3
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.85 E-value=1.7e-21 Score=134.57 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
++|+|.. .+| .++|++++|+|||++|+++||+++++|+.|.||+|+++|.+|++.+.+...|++++.++|++|+||++
T Consensus 2 ~~v~~~~-~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~ 79 (95)
T 1frr_A 2 YKTVLKT-PSG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAI 79 (95)
T ss_dssp EEEEEEE-TTE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred eEEEEEe-CCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECE
Confidence 6788863 255 47899999999999999999999999999999999999999999888888899999999999999974
No 4
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.84 E-value=2.8e-21 Score=134.74 Aligned_cols=79 Identities=34% Similarity=0.623 Sum_probs=70.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEe
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSA 141 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~ 141 (142)
.++|+|.. .+| .++|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+.+...|+++++++||||+||+
T Consensus 2 ~~~v~~~~-~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (97)
T 1a70_A 2 AYKVTLVT-PTG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAA 79 (97)
T ss_dssp EEEEEEEE-TTE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGC
T ss_pred eEEEEEEe-CCc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeEC
Confidence 46788864 233 4789999999999999999999999999999999999999999988887889998999999999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 80 ~ 80 (97)
T 1a70_A 80 Y 80 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.84 E-value=3.9e-21 Score=134.10 Aligned_cols=80 Identities=35% Similarity=0.607 Sum_probs=71.0
Q ss_pred ceEEEEEeCCCCc-EEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEE
Q 032345 62 THKVTVHDRFRGV-VHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLS 140 (142)
Q Consensus 62 ~~~Vti~~~~~G~-~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq 140 (142)
.++|+|... +|. .++|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+.+...|++++.++|++|+||
T Consensus 2 ~~~V~~~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq 80 (98)
T 1czp_A 2 TFKVTLINE-AEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCV 80 (98)
T ss_dssp EEEEEEEET-TTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGG
T ss_pred ceEEEEEeC-CCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeee
Confidence 478888752 332 579999999999999999999999999999999999999999998887778999999999999999
Q ss_pred eC
Q 032345 141 AL 142 (142)
Q Consensus 141 ~~ 142 (142)
++
T Consensus 81 ~~ 82 (98)
T 1czp_A 81 AY 82 (98)
T ss_dssp CE
T ss_pred CE
Confidence 74
No 6
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.84 E-value=4.3e-21 Score=132.96 Aligned_cols=78 Identities=33% Similarity=0.601 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
|+|+|.. .+| .++|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++
T Consensus 1 ~~v~~~~-~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 78 (94)
T 1awd_A 1 YKVTLKT-PSG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAY 78 (94)
T ss_dssp CEEEEEE-TTE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred CEEEEEe-CCC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECE
Confidence 4678864 244 47899999999999999999999999999999999999999999888888899999999999999974
No 7
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.83 E-value=9.1e-21 Score=131.23 Aligned_cols=77 Identities=25% Similarity=0.435 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
++|+|.. .+| .++|++++|+|||++|+++| .++++|+.|.||+|+++|++|++.+.+...|++++.++||||+||++
T Consensus 2 ~~V~~~~-~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~ 78 (93)
T 1wri_A 2 YKVTLKT-PDG-DITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAI 78 (93)
T ss_dssp EEEEEEE-TTE-EEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCE
T ss_pred EEEEEEE-CCC-eEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCE
Confidence 6788864 233 57899999999999999999 99999999999999999999999888878899989999999999974
No 8
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.82 E-value=4.6e-21 Score=133.55 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=70.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCC--cccCCCChhhhcCceEEeE
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKACTILL 139 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~--~e~~~Ls~~e~~~g~~LaC 139 (142)
.++|+|.. .+|..++|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+ .+...|+++++++||||+|
T Consensus 4 ~~~v~~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaC 82 (98)
T 1jq4_A 4 VHTITAVT-EDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLC 82 (98)
T ss_dssp EEEEEEEE-TTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTT
T ss_pred cEEEEEEe-cCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEe
Confidence 47788864 24666899999999999999999999999999999999999999999886 3567899999999999999
Q ss_pred EeC
Q 032345 140 SAL 142 (142)
Q Consensus 140 q~~ 142 (142)
|++
T Consensus 83 q~~ 85 (98)
T 1jq4_A 83 RTY 85 (98)
T ss_dssp TCC
T ss_pred eCE
Confidence 974
No 9
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.81 E-value=1.6e-20 Score=153.57 Aligned_cols=107 Identities=18% Similarity=0.332 Sum_probs=85.6
Q ss_pred CCCcceecccccc-------cCcCCCceeeeccCCCC-----CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 30 NPSSLKCRPRKTV-------SSELQTTAGVNGSYSPS-----IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 30 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~P~-----~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
....|.|.+..+. ..+....+|+|.|..+. ...++|+|. .+| ++|++++|+|||++|+++||++
T Consensus 193 ~~~vyvCGP~~m~~~v~~~l~~~~~~~i~~E~F~~~~~~~~~~~~~~v~~~--~~~--~~~~~~~~~~ll~a~~~~g~~~ 268 (321)
T 2pia_A 193 AQHVYCCGPQALMDTVRDMTGHWPSGTVHFESFGATNTNARENTPFTVRLS--RSG--TSFEIPANRSILEVLRDANVRV 268 (321)
T ss_dssp TEEEEEESCHHHHHHHHHHTTTSCTTCEEEECCCCCCCCCSCCCCEEEEET--TTC--CEEEECTTSCHHHHHHHTTCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCHhhEEEEecCCCCCCCCCCccEEEEEe--CCC--eEEEECCCCcHHHHHHHcCCCC
Confidence 3346788776521 22556779999996532 224566663 355 6899999999999999999999
Q ss_pred CCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEEeEEeC
Q 032345 98 PFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILLSAL 142 (142)
Q Consensus 98 ~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaCq~~ 142 (142)
+|+||.|.||+|+++|++|++.+.+ ..|+++++ +||+|+||++
T Consensus 269 ~~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~ 311 (321)
T 2pia_A 269 PSSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSR 311 (321)
T ss_dssp CCSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCE
T ss_pred CCCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeE
Confidence 9999999999999999999998876 57998888 9999999974
No 10
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.79 E-value=3.9e-20 Score=131.03 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=67.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCccCC------cccCCCCh-hhhcCc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKSKA 134 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~v~~------~e~~~Ls~-~e~~~g 134 (142)
+|+|.. .+|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|++.+ .+...|++ +++++|
T Consensus 2 ~vt~~~-~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 2 AILVTT-RDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp EEEEEC-TTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred EEEEEe-CCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence 578875 57888999999999999999999999 999999 899999999999998653 13356776 788999
Q ss_pred eEEeEEeC
Q 032345 135 CTILLSAL 142 (142)
Q Consensus 135 ~~LaCq~~ 142 (142)
|||+||++
T Consensus 81 ~rLaCq~~ 88 (104)
T 3lxf_A 81 SRLSCQIT 88 (104)
T ss_dssp EEEGGGCB
T ss_pred cEEEeeCE
Confidence 99999975
No 11
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.78 E-value=5.3e-20 Score=130.35 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=66.4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC--CCCCc-eecCCceEEEecCccCC------cccCCCCh-hhh
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACRH-GCCTSCAVRIKSGQIKQ------PEALGISA-ELK 131 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~--~~Cr~-G~CGtC~v~v~~G~v~~------~e~~~Ls~-~e~ 131 (142)
+++|+|.. .+|..++|++++|+|||++|+++||+++ ++|+. |.||+|+++|.+|.+.. .+...|+. .++
T Consensus 6 m~~V~~~~-~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 84 (108)
T 2bt6_A 6 KITVHFIN-RDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGL 84 (108)
T ss_dssp EEEEEEEC-TTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTC
T ss_pred eEEEEEEC-CCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccC
Confidence 36788873 3687789999999999999999999999 99985 99999999999995543 13356664 678
Q ss_pred cCceEEeEEeC
Q 032345 132 SKACTILLSAL 142 (142)
Q Consensus 132 ~~g~~LaCq~~ 142 (142)
++||||+||++
T Consensus 85 ~~g~rLaCq~~ 95 (108)
T 2bt6_A 85 TDRSRLGCQIC 95 (108)
T ss_dssp CTTEEEGGGCB
T ss_pred CCCcEeeEEEE
Confidence 89999999974
No 12
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.78 E-value=8.2e-20 Score=128.82 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=64.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCccC------CcccCCCChhh-h-cC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIK------QPEALGISAEL-K-SK 133 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~v~------~~e~~~Ls~~e-~-~~ 133 (142)
+|+|.. .+|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|.+. ..+...|++.+ . ++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1xlq_A 2 KVVYVS-HDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKP 80 (106)
T ss_dssp EEEEEC-TTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 577742 47877899999999999999999999 999996 79999999999999443 23445677655 6 89
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
||||+||++
T Consensus 81 g~rLaCq~~ 89 (106)
T 1xlq_A 81 NSRLCCQII 89 (106)
T ss_dssp TEEEGGGCB
T ss_pred CcEeeeeeE
Confidence 999999974
No 13
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.78 E-value=7e-20 Score=130.06 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCc-eecCCceEEEecCccCC------cccCCCCh-hhhcC
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRH-GCCTSCAVRIKSGQIKQ------PEALGISA-ELKSK 133 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~-G~CGtC~v~v~~G~v~~------~e~~~Ls~-~e~~~ 133 (142)
..+|+|.. .+|+.++|.+++|+|||++|+++||+++++|+. |.||+|+++|++|++.+ .+...|+. .++++
T Consensus 5 m~~v~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~ 83 (109)
T 2y5c_A 5 VVNVVFVD-RSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQE 83 (109)
T ss_dssp EEEEEEEC-TTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCT
T ss_pred cEEEEEEc-CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCC
Confidence 35777753 478777899999999999999999999999996 99999999999996543 13345653 57889
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
||||+||++
T Consensus 84 g~rLaCq~~ 92 (109)
T 2y5c_A 84 NSRLGCQIV 92 (109)
T ss_dssp TEEEGGGCB
T ss_pred CcEeeEEeE
Confidence 999999974
No 14
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.4e-19 Score=127.08 Aligned_cols=80 Identities=21% Similarity=0.161 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc------ccCCCCh-hhhcC
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP------EALGISA-ELKSK 133 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~------e~~~Ls~-~e~~~ 133 (142)
.++|+|.. .+|..++|++++|+|||++|+++||+++++|+ .|.||+|+++|.+|++.+. +...|++ ++.++
T Consensus 3 ~~~v~~~~-~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 3 GIKVFFVT-PEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp CEEEEEEC-TTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred ceEEEEEe-CCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 46788872 36777899999999999999999999999999 7999999999999977642 2235665 46889
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
||||+||++
T Consensus 82 g~rLaCq~~ 90 (103)
T 2wlb_A 82 TSRLGCQVL 90 (103)
T ss_dssp TEEEGGGCB
T ss_pred CcEeeEeeE
Confidence 999999974
No 15
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.77 E-value=1.1e-19 Score=128.11 Aligned_cols=78 Identities=13% Similarity=0.258 Sum_probs=64.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCccCC------cccCCCChh-hhc-C
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-LKS-K 133 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~v~~------~e~~~Ls~~-e~~-~ 133 (142)
+|+|.. .+|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|++.+ .+...|++. +++ +
T Consensus 2 ~v~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 2 KIIFIE-HNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp EEEEEC-TTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 567742 46777899999999999999999999 999996 799999999999995432 234567765 678 9
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
||||+||++
T Consensus 81 g~rLaCq~~ 89 (106)
T 1uwm_A 81 TSRLTCQIK 89 (106)
T ss_dssp TEEEGGGCB
T ss_pred CcEecccCE
Confidence 999999974
No 16
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.77 E-value=1.7e-19 Score=132.46 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCccCC------cccCCCC-hhh
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGIS-AEL 130 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~v~~------~e~~~Ls-~~e 130 (142)
.++.+|+|.. .+|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|++.. .+...|+ .++
T Consensus 19 ~~M~~Vt~~~-~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e 97 (126)
T 3hui_A 19 SHMAKINFVD-HTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYD 97 (126)
T ss_dssp CSEEEEEEEC-TTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSS
T ss_pred CCceEEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhh
Confidence 3457888874 37877899999999999999999999 999998 899999999999997532 2445677 478
Q ss_pred hcCceEEeEEeC
Q 032345 131 KSKACTILLSAL 142 (142)
Q Consensus 131 ~~~g~~LaCq~~ 142 (142)
+++||||+||++
T Consensus 98 ~~~g~RLaCQ~~ 109 (126)
T 3hui_A 98 VRPNSRLSCQIK 109 (126)
T ss_dssp CCTTEEEGGGCB
T ss_pred ccCCeEEeeeCE
Confidence 889999999974
No 17
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.77 E-value=1.6e-19 Score=128.77 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=64.4
Q ss_pred eEEEEEeCCCC---cEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCc-----ccCCCChh-hhc
Q 032345 63 HKVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP-----EALGISAE-LKS 132 (142)
Q Consensus 63 ~~Vti~~~~~G---~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~-----e~~~Ls~~-e~~ 132 (142)
.+|+|.+. +| ..++|++++|+|||++|+++||+++++|+ .|.||+|+++|++|+..+. +...|+++ +++
T Consensus 2 ~~vt~~~~-~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 2 PLVTFLPH-EKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CEEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CEEEEEcC-CCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 36888753 33 34799999999999999999999999999 6999999999999975442 23456654 788
Q ss_pred CceEEeEEeC
Q 032345 133 KACTILLSAL 142 (142)
Q Consensus 133 ~g~~LaCq~~ 142 (142)
+||||+||++
T Consensus 81 ~g~rLaCq~~ 90 (113)
T 3ah7_A 81 AQSRLGCQVF 90 (113)
T ss_dssp TTEEEGGGCB
T ss_pred CCcEEeeeCE
Confidence 9999999974
No 18
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.76 E-value=1.4e-19 Score=133.10 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhh-hcCceEEeEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAEL-KSKACTILLSA 141 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e-~~~g~~LaCq~ 141 (142)
.+|+|.. +|+ .+|++++|+|||++|+++|+.++++|+.|.||+|+++|++|++.+.+...|++++ .++|+||+||+
T Consensus 28 ~~i~i~~--~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq~ 104 (128)
T 1doi_A 28 SDMDLDD--EDY-GSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIG 104 (128)
T ss_dssp HHSCCCT--TTE-EEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGE
T ss_pred cEEEEEe--CCc-EEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEEe
Confidence 4556643 662 2899999999999999999999999999999999999999999887777899855 78999999997
Q ss_pred C
Q 032345 142 L 142 (142)
Q Consensus 142 ~ 142 (142)
+
T Consensus 105 ~ 105 (128)
T 1doi_A 105 S 105 (128)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.76 E-value=3e-20 Score=130.85 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=65.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCc------cCCcccCCCC--hhhhcC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQ------IKQPEALGIS--AELKSK 133 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~------v~~~e~~~Ls--~~e~~~ 133 (142)
+|+|.. .+|..++|++++|+|||++|+++||+ ++++|+ .|.||+|+++|++|+ +...+...|+ ++++++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (105)
T 1b9r_A 2 RVVFID-EQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA 80 (105)
T ss_dssp EEEECC-TTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 466632 36766899999999999999999999 999999 699999999999994 3344445676 578889
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
||||+||++
T Consensus 81 g~rLaCq~~ 89 (105)
T 1b9r_A 81 GTRLSCQVF 89 (105)
T ss_dssp TBSCGGGCC
T ss_pred CcEeeeeCE
Confidence 999999975
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.76 E-value=3.8e-19 Score=123.14 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=64.8
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCC-CCCCCC-ceecCCceEEEecCccCCc---ccCCCChhhhcCceEEe
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQP---EALGISAELKSKACTIL 138 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~-l~~~Cr-~G~CGtC~v~v~~G~v~~~---e~~~Ls~~e~~~g~~La 138 (142)
+|+|.. +|+.++|++++|+|||++|+++|++ ++++|+ .|.||+|+++|.+|++... +...|+ ++++||||+
T Consensus 2 ~v~i~~--~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLa 77 (93)
T 1l5p_A 2 TITAVK--GGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLA 77 (93)
T ss_dssp EEEEEE--TTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEG
T ss_pred eEEEEe--CCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEe
Confidence 567665 7877899999999999999999999 999999 8999999999999988643 334566 788999999
Q ss_pred EEeC
Q 032345 139 LSAL 142 (142)
Q Consensus 139 Cq~~ 142 (142)
||++
T Consensus 78 Cq~~ 81 (93)
T 1l5p_A 78 CAIT 81 (93)
T ss_dssp GGCE
T ss_pred eECE
Confidence 9974
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.75 E-value=1.5e-18 Score=141.87 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCC----cccCCCChhhhcCceE
Q 032345 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ----PEALGISAELKSKACT 136 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~----~e~~~Ls~~e~~~g~~ 136 (142)
++++|+|.. .+|..++|++++|+|||++|+++||+++++|+.|.||+|+++|++|++.+ .+...|+++++++|+|
T Consensus 2 ~~~~v~~~~-~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~ 80 (338)
T 1krh_A 2 SNHQVALQF-EDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV 80 (338)
T ss_dssp CCEEEEEEC-TTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred CceEEEEEE-cCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence 357899874 34666899999999999999999999999999999999999999999876 2567899999999999
Q ss_pred EeEEeC
Q 032345 137 ILLSAL 142 (142)
Q Consensus 137 LaCq~~ 142 (142)
|+||++
T Consensus 81 LaCq~~ 86 (338)
T 1krh_A 81 LACQCR 86 (338)
T ss_dssp ETTTCE
T ss_pred EEEeCE
Confidence 999974
No 22
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.72 E-value=4e-18 Score=121.29 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=62.0
Q ss_pred EEEEEeCCCC---cEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCccc-----CCCCh-hhhcC
Q 032345 64 KVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEA-----LGISA-ELKSK 133 (142)
Q Consensus 64 ~Vti~~~~~G---~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~e~-----~~Ls~-~e~~~ 133 (142)
+|+|... +| ..++|++++|+|||++|+++|+.++++|+ .|.||+|+++|++|++.+... ..|+. .+.++
T Consensus 3 ~i~~~~~-~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~ 81 (111)
T 1i7h_A 3 KIVILPH-QDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEP 81 (111)
T ss_dssp EEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCT
T ss_pred EEEEEeC-CCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCC
Confidence 6777642 22 34789999999999999999999999995 899999999999998876432 22332 24678
Q ss_pred ceEEeEEeC
Q 032345 134 ACTILLSAL 142 (142)
Q Consensus 134 g~~LaCq~~ 142 (142)
|+||+||++
T Consensus 82 g~rLaCq~~ 90 (111)
T 1i7h_A 82 ESRLSCQAR 90 (111)
T ss_dssp TEEETTTCB
T ss_pred CcEEEEEEE
Confidence 999999974
No 23
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.68 E-value=2.2e-17 Score=147.94 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=71.0
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-ceecCCceEEEecCccCCcccCCCChhhhcCceEEeE
Q 032345 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEALGISAELKSKACTILL 139 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~LaC 139 (142)
.+++|+|.. +| ++|++++|+|||++|+++||+++++|+ .|.||+|+++|++|++.+.+...|+++++++|+||+|
T Consensus 2 ~m~~V~~~~--sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaC 77 (631)
T 3zyy_X 2 AEYKVLFKP--DQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLAC 77 (631)
T ss_dssp -CEEEEEET--TT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETT
T ss_pred CceEEEEec--CC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEee
Confidence 357888874 66 789999999999999999999999999 8999999999999999988888899999999999999
Q ss_pred EeC
Q 032345 140 SAL 142 (142)
Q Consensus 140 q~~ 142 (142)
|++
T Consensus 78 qa~ 80 (631)
T 3zyy_X 78 QTY 80 (631)
T ss_dssp TEE
T ss_pred eCE
Confidence 984
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.59 E-value=3.1e-17 Score=119.82 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC--CCCC-ceecCCceEEEecCccC-Cc-----ccCCCCh-hhh
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACR-HGCCTSCAVRIKSGQIK-QP-----EALGISA-ELK 131 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~--~~Cr-~G~CGtC~v~v~~G~v~-~~-----e~~~Ls~-~e~ 131 (142)
..+|+|.. .+|..++|++++|+|||++|+++||+++ +.|+ .|.||+|+++|.+|... .+ |...|+. .++
T Consensus 5 ~v~Vtf~~-~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~~ 83 (123)
T 3n9z_C 5 KITVHFIN-RDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGL 83 (123)
T ss_dssp ---------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC----
T ss_pred cEEEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccccc
Confidence 35677753 4677789999999999999999999999 9998 79999999999975432 21 3345653 567
Q ss_pred cCceEEeEEeC
Q 032345 132 SKACTILLSAL 142 (142)
Q Consensus 132 ~~g~~LaCq~~ 142 (142)
++|+||+||++
T Consensus 84 ~~~~RLaCQ~~ 94 (123)
T 3n9z_C 84 TDRSRLGCQIC 94 (123)
T ss_dssp ----CBCC---
T ss_pred cCCeEEeeEeE
Confidence 78999999974
No 25
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.75 E-value=2.6e-08 Score=75.67 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=45.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CCC-CCCCCCceecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NIT-LPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI~-l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
.|+|+. +|+.+++.+++++|||++++++ |+. ++++|+.|.||+|.+.| +|..
T Consensus 11 ~i~~~i--ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~~ 64 (168)
T 1t3q_A 11 RISATI--NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGAP 64 (168)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTEE
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCCE
Confidence 455554 7888888899999999999997 997 99999999999999998 7864
No 26
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.36 E-value=1.1e-06 Score=66.67 Aligned_cols=51 Identities=16% Similarity=0.460 Sum_probs=43.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~ 117 (142)
.|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||+|.|.| +|.
T Consensus 5 ~i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v-dG~ 57 (160)
T 3hrd_D 5 TINLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF-NGD 57 (160)
T ss_dssp EEEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE-TTE
T ss_pred eEEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE-CCE
Confidence 456654 7888889999999999999986 77 589999999999999987 564
No 27
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.35 E-value=1e-06 Score=66.59 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=43.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~ 117 (142)
.|+|+. +|+.++++++++++||+++++. |+ ...++|+.|.||+|.|.| +|.
T Consensus 4 ~i~~~v--NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~ 56 (161)
T 1rm6_C 4 ILRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR 56 (161)
T ss_dssp EEEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE
T ss_pred eEEEEE--CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc
Confidence 466665 8988888889999999999987 75 588999999999999997 675
No 28
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.35 E-value=4.3e-07 Score=82.54 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCCCCCC------CceecCCceEEEe
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITLPFAC------RHGCCTSCAVRIK 114 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l~~~C------r~G~CGtC~v~v~ 114 (142)
|| +++++++|+|||+|++++||.||+.| ..|.|+.|.|+|.
T Consensus 7 dg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~ 53 (783)
T 3i9v_3 7 ND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIG 53 (783)
T ss_dssp SS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEE
T ss_pred CC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEec
Confidence 78 57899999999999999999999999 6899999999995
No 29
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.34 E-value=1.3e-06 Score=66.39 Aligned_cols=52 Identities=25% Similarity=0.490 Sum_probs=43.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
.|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||+|.|.| +|+.
T Consensus 5 ~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG~~ 58 (163)
T 1ffv_A 5 IITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGRS 58 (163)
T ss_dssp EEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTEE
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CCcE
Confidence 456654 7988888999999999999874 65 478999999999999997 6753
No 30
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.34 E-value=1.3e-06 Score=66.49 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=43.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||+|.|.| +|..
T Consensus 5 ~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG~~ 58 (166)
T 1n62_A 5 HIELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DGMS 58 (166)
T ss_dssp EEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTEE
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CCcE
Confidence 456654 7988888999999999999884 65 478999999999999997 6753
No 31
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.31 E-value=3e-07 Score=72.26 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=36.3
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceecCCceEEEecCccC
Q 032345 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIK 119 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~~G~v~ 119 (142)
+++++++|+|||++|++.| +...++|+.|.||+|.++| +|...
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~~ 74 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRPS 74 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEEE
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCee
Confidence 5678889999999998754 4566799999999999999 88754
No 32
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.24 E-value=6.1e-07 Score=70.47 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=36.6
Q ss_pred EEEEeCCCChHHHHHHHCC------CCCCCCCCceecCCceEEEecCcc
Q 032345 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+++++++|+|||++|++.| +...++|+.|.||+|.++| +|..
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~~ 73 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNVP 73 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTEE
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCEE
Confidence 5788899999999999998 3477899999999999995 7864
No 33
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.97 E-value=1.1e-05 Score=71.10 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=41.5
Q ss_pred EEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCC-------ceecCCceEEEecCc
Q 032345 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-------HGCCTSCAVRIKSGQ 117 (142)
Q Consensus 65 Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr-------~G~CGtC~v~v~~G~ 117 (142)
|+|.. +| +.+++++|+|||+||+++|+.+|+.|. .|.||.|.+.| +|.
T Consensus 2 v~~~i--ng--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~ 56 (574)
T 3c8y_A 2 KTIII--NG--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT 56 (574)
T ss_dssp EEEEE--TT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT
T ss_pred eEEEE--CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC
Confidence 44544 78 678999999999999999999999998 89999999997 465
No 34
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.87 E-value=6.2e-06 Score=65.43 Aligned_cols=42 Identities=29% Similarity=0.518 Sum_probs=34.4
Q ss_pred EEEEeCC-CChHHHHHHHCC------CCCCCCCCceecCCceEEEecCcc
Q 032345 76 HEFLVPE-DQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 76 ~~~~v~~-getLL~aa~~~G------I~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+++++++ |+|||++|++.| +...++|+.|.||+|.+.| +|..
T Consensus 33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~~ 81 (252)
T 2h88_B 33 YEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGGN 81 (252)
T ss_dssp EEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTEE
T ss_pred EEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCcE
Confidence 4567777 999999999876 3456699999999999995 7864
No 35
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.83 E-value=1.1e-05 Score=63.05 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=36.8
Q ss_pred EEEEeCC--CChHHHHHHHCC-----CCCCCCCCceecCCceEEEecCccC
Q 032345 76 HEFLVPE--DQYILHTAESQN-----ITLPFACRHGCCTSCAVRIKSGQIK 119 (142)
Q Consensus 76 ~~~~v~~--getLL~aa~~~G-----I~l~~~Cr~G~CGtC~v~v~~G~v~ 119 (142)
+++++++ |+|||++|++.| +...++|+.|.||+|.|.| +|...
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~~~ 72 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGKNG 72 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTEEE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCEEE
Confidence 5677888 999999999987 5678899999999999997 77643
No 36
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.35 E-value=0.00029 Score=60.94 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=39.9
Q ss_pred EEEEeCCCCcEEEE-EeCCCChHHHHHHHCCC-CCCCCCCceecCCceEEE
Q 032345 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRI 113 (142)
Q Consensus 65 Vti~~~~~G~~~~~-~v~~getLL~aa~~~GI-~l~~~Cr~G~CGtC~v~v 113 (142)
|+|.. +|+.+++ .++++++||+.+++.|+ ...++|+.|.||+|.|.|
T Consensus 3 ~~~~v--Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v 51 (462)
T 2w3s_A 3 IAFLL--NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI 51 (462)
T ss_dssp EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence 44544 7987777 77899999999997677 489999999999999998
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.31 E-value=0.00023 Score=54.14 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=39.0
Q ss_pred EEEEeCCCCcEE-EEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEe
Q 032345 65 VTVHDRFRGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 65 Vti~~~~~G~~~-~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
|+|.. +|+.+ .+.++++++||+.+++. |+ ...++|+.|.||+|.|.|-
T Consensus 5 i~~~v--NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 5 LVFFV--NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp EEEEE--TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 44544 78653 45788999999999975 76 6889999999999999985
No 38
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.21 E-value=0.0003 Score=57.43 Aligned_cols=42 Identities=26% Similarity=0.508 Sum_probs=33.6
Q ss_pred EEEEeCC-CChHHHHHHHCCC------CCCCCCCceecCCceEEEecCcc
Q 032345 76 HEFLVPE-DQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 76 ~~~~v~~-getLL~aa~~~GI------~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+++++++ |.+||++|.+.+. ...++|+.|.||+|.+.| .|..
T Consensus 57 ~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~~ 105 (282)
T 3vr8_B 57 FDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGEN 105 (282)
T ss_pred EEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCEE
Confidence 5667777 9999999997553 355799999999999986 6764
No 39
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.20 E-value=0.00068 Score=62.89 Aligned_cols=52 Identities=17% Similarity=0.533 Sum_probs=43.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+|.. ||+.++++++++++||+.+++. |. ...++|+.|.||+|.|.| +|+.
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v-dg~~ 56 (907)
T 1vlb_A 3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DGKV 56 (907)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTEE
T ss_pred eEEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE-CCeE
Confidence 355554 8988899999999999999974 65 689999999999999987 6753
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.02 E-value=0.00079 Score=62.42 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=43.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEecCcc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~~G~v 118 (142)
+|+|.. +|+.++++++++++||+.+++. |. ...++|+.|.||+|.|.| +|+.
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v-dg~~ 56 (907)
T 1dgj_A 3 TKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DGKV 56 (907)
T ss_dssp EEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTEE
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE-CCeE
Confidence 355554 7888899999999999999974 66 689999999999999987 6753
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.011 Score=50.28 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=36.9
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCC----CCCCC-cee--cCCceEEEecCc
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL----PFACR-HGC--CTSCAVRIKSGQ 117 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l----~~~Cr-~G~--CGtC~v~v~~G~ 117 (142)
+|+|.+ || +.+++.+|+||++|++++|+++ +.. + .|. |+.|.+.| +|.
T Consensus 15 ~v~~~~--dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v-~g~ 69 (493)
T 1y56_A 15 KVTIYF--EG--KELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV-NGV 69 (493)
T ss_dssp EEEEEE--TT--EEEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS-SSC
T ss_pred eEEEEE--CC--EEEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE-CCE
Confidence 577776 88 6789999999999999999976 222 3 355 78899986 454
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.02 E-value=0.027 Score=54.33 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=39.4
Q ss_pred EEEEEeCCCCcEEEE-EeCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEe
Q 032345 64 KVTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~-~v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
.|+|.. +|+.+++ .++++.+||+.+++. |+ ...++|+.|.||.|.|.|-
T Consensus 5 ~i~~~v--Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 5 ELVFFV--NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp CEEEEE--TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred cEEEEE--CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 355554 7876654 588999999999874 76 5889999999999999984
No 43
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=92.99 E-value=0.12 Score=49.69 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=38.7
Q ss_pred CceEEEEEeCCCCcEEEEE-eCCCChHHHHHHHC-CC-CCCCCCCceecCCceEEEe
Q 032345 61 PTHKVTVHDRFRGVVHEFL-VPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~-v~~getLL~aa~~~-GI-~l~~~Cr~G~CGtC~v~v~ 114 (142)
...+++|.. +|+..++. +.++.|||+-++.+ |. --..+|+.|.||.|.|-|-
T Consensus 6 ~~~~l~F~v--NG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 6 ESDELIFFV--NGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp -CCCEEEEE--TTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCCeEEEEE--CCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 334577765 78544332 56899999999874 65 4778999999999999884
No 44
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=89.57 E-value=0.64 Score=42.93 Aligned_cols=48 Identities=4% Similarity=-0.027 Sum_probs=39.7
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCC-----------CceecCCceEEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC-----------RHGCCTSCAVRIK 114 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~C-----------r~G~CGtC~v~v~ 114 (142)
..|+|.+ +| +++++.+|+||++|++.+|+.+...| ..|.|..|.+.+.
T Consensus 21 ~~~~~~~--dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 21 EALSLTV--DG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp EEEEEEE--TT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred CeEEEEE--CC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 3577776 88 68899999999999999999865544 4578999999997
No 45
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=67.80 E-value=2.2 Score=32.64 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=21.3
Q ss_pred hHHHHHHHCCCCCC------CCCCceecCCceEEEe
Q 032345 85 YILHTAESQNITLP------FACRHGCCTSCAVRIK 114 (142)
Q Consensus 85 tLL~aa~~~GI~l~------~~Cr~G~CGtC~v~v~ 114 (142)
.+.+ +.+.|++.. ..|+.|.||.|.+...
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACGIGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSSSSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCcccccccCCcccc
Confidence 3444 556777632 5899999999999864
No 46
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=61.83 E-value=3.2 Score=27.85 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=20.0
Q ss_pred hHHHHHHHCCCCC-----CCCCCceecCCce
Q 032345 85 YILHTAESQNITL-----PFACRHGCCTSCA 110 (142)
Q Consensus 85 tLL~aa~~~GI~l-----~~~Cr~G~CGtC~ 110 (142)
..|+.+++.|.-. +.+|..|.|++|.
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~ 65 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSCP 65 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSCS
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCCC
Confidence 3688889999743 3689888899994
No 47
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=61.45 E-value=10 Score=25.62 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=29.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHH----CCCCCCCCCCceecCCceEEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAES----QNITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~----~GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
..|.++. ++++...++|.+|.||-+|+.+ -|+ .+-.|.|...
T Consensus 8 ~~irvhL-Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 53 (86)
T 1wxm_A 8 GTVKVYL-PNKQRTVVTVRDGMSVYDSLDKALKVRGL---------NQDCCVVYRL 53 (86)
T ss_dssp SEEEEEC-SSSCEEEEECCSSCBSHHHHHHHHHTTTC---------CSSSEEEEEE
T ss_pred ceEEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHeEEEEc
Confidence 4677776 5677778999999998887654 344 3556666644
No 48
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=58.38 E-value=17 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCCcEEEEEe-CCCChHHHHHHHCC
Q 032345 60 IPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQN 94 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v-~~getLL~aa~~~G 94 (142)
.++.+|+|... +|....|.+ +.+++|+++|+++.
T Consensus 6 ~k~i~i~v~~~-~~~~~~~~v~t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHG-DQTENVFEFDTDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcC-CCceeEEEEcCCccHHHHHHHHcC
Confidence 45667777763 455555555 57899999999998
No 49
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=55.93 E-value=15 Score=24.25 Aligned_cols=45 Identities=13% Similarity=-0.035 Sum_probs=29.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEe
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
.|.++. ++++...++|.+|.||-+|+.++ ... |+=.+-.|.|...
T Consensus 3 ~irvhL-Pn~QrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~V~~~ 47 (77)
T 1c1y_B 3 TIRVFL-PNKQRTVVNVRNGMSLHDCLMKA-LKV----RGLQPECCAVFRL 47 (77)
T ss_dssp EEEEEE-TTTEEEEEECCTTCBHHHHHHHH-HHT----TTCCGGGEEEEEE
T ss_pred eEEEEC-CCCceEEEEecCCcCHHHHHHHH-HHH----cCCCHHHeEEEEe
Confidence 456665 46777789999999998887543 111 1224566777755
No 50
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=53.56 E-value=5.4 Score=25.97 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=19.5
Q ss_pred HHHHHHHCCCC-----CCCCCCceecCCceE
Q 032345 86 ILHTAESQNIT-----LPFACRHGCCTSCAV 111 (142)
Q Consensus 86 LL~aa~~~GI~-----l~~~Cr~G~CGtC~v 111 (142)
-|+.+++.|.- -..+|..|.|++|.-
T Consensus 36 dL~~Le~~G~l~R~~~~GgaC~~g~C~~C~~ 66 (78)
T 1xn7_A 36 MLQQLESMGKAVRIQEEPDGCLSGSCKSCPE 66 (78)
T ss_dssp HHHHHHHHTSEEEECCCCCCCCCSSCCCCCC
T ss_pred HHHHHHHCCCEEEecCcCCCCCCCCCCCCCC
Confidence 57888888864 346888788999953
No 51
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=49.29 E-value=16 Score=25.62 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHC----CCCCCCCCCceecCCceEEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQ----NITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~----GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
..|.++. ++++...++|.+|.||-||+.++ |+ .+-.|.|...
T Consensus 19 ~~ir~hL-PNqQrT~V~VrpG~tlrdaL~KaLk~R~L---------~pe~C~Vy~~ 64 (107)
T 1rrb_A 19 NTIRVFL-PNKQRTVVNVRNGMSLHDCLMKALKVRGL---------QPECCAVFRL 64 (107)
T ss_dssp CEEEEEC-TTTCCEEEECCTTCBHHHHHHHHHHHHTC---------CTTTEEEEEC
T ss_pred ceEEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHceeEEc
Confidence 3577776 45666789999999998887543 44 3666777755
No 52
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=48.36 E-value=25 Score=24.15 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
..|.+.. ++++...++|.+|.||-+|+.++ ... |+-.+-.|.|...
T Consensus 14 ~~irvhL-PNqQrT~V~VrpG~tlrdaL~Ka-Lk~----R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 14 PIVRVFL-PNKQRTVVPARCGVTVRDSLKKA-LMM----RGLIPECCAVYRI 59 (96)
T ss_dssp CEEEEEE-TTTEEEEEECCTTCBHHHHHHHH-HHT----TTCCGGGEEEEEC
T ss_pred CEEEEEC-CCCceEEEEecCCcCHHHHHHHH-HHH----cCCChHHeEEEEc
Confidence 4677766 46777789999999998877543 111 1124566777755
No 53
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=47.78 E-value=23 Score=24.27 Aligned_cols=42 Identities=12% Similarity=-0.044 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHHHH----CCCCCCCCCCceecCCceEEEe
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAES----QNITLPFACRHGCCTSCAVRIK 114 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa~~----~GI~l~~~Cr~G~CGtC~v~v~ 114 (142)
..|.++. ++++...++|.+|.||-+|+.+ -|+ .+-.|.|...
T Consensus 18 ~~irvhL-PNqQrT~V~VrpG~tlrdAL~KaLk~R~L---------~pe~C~Vy~~ 63 (95)
T 2l05_A 18 PIVRVFL-PNKQRTVVPARCGVTVRDSLKKALMMRGL---------IPECCAVYRI 63 (95)
T ss_dssp CEEEEEE-TTTEEEEEECCTTCBHHHHHHHHHHHHTC---------CGGGEEEEEE
T ss_pred cEEEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCC---------CHHHcEEEEc
Confidence 3566666 5677778999999999888754 344 4556676644
No 54
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.21 E-value=52 Score=20.98 Aligned_cols=33 Identities=3% Similarity=-0.069 Sum_probs=24.4
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCChHHHHHH
Q 032345 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAE 91 (142)
Q Consensus 58 P~~~~~~Vti~~~~~G~~~~~~v~~getLL~aa~ 91 (142)
|.+...+|.|+. .+|+...+++.+.+||.+.-.
T Consensus 3 ~~~~~m~i~Vk~-~~g~~~~~~v~~~~TV~~LK~ 35 (95)
T 1wia_A 3 SGSSGINVRLKF-LNDTEELAVARPEDTVGTLKS 35 (95)
T ss_dssp CCCCSEEEEEEE-TTTEEEEEEECSSSBHHHHHH
T ss_pred CCCCeEEEEEEe-CCCCEEEEEECCCCcHHHHHH
Confidence 445557788875 357778899999999987544
No 55
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.19 E-value=59 Score=21.07 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=24.9
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCCC
Q 032345 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITL 97 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~l 97 (142)
+..+|+|+. +|+.+.++++++.||.+.= ...||+.
T Consensus 16 ~~~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 16 ELVDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCEEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred ceEEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 446777775 5778889999999987643 3456553
No 56
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=43.07 E-value=52 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP 98 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~ 98 (142)
+|+|+.. .....++++++|.|+.+.+++-|++..
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 3444442 223456899999999999999999875
No 57
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=41.88 E-value=15 Score=20.32 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=18.4
Q ss_pred EEEeCCCChHHHHHHHCCCCC
Q 032345 77 EFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 77 ~~~v~~getLL~aa~~~GI~l 97 (142)
.+.|.+|+||-..|.+.|+.+
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEcCCCcHHHHHHHHCcCH
Confidence 567899999999999998874
No 58
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.67 E-value=38 Score=23.01 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=27.7
Q ss_pred CCCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCCC
Q 032345 59 SIPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITLP 98 (142)
Q Consensus 59 ~~~~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l~ 98 (142)
..++.+|.|+. ..|+..++++.+++||.+. +++.||+..
T Consensus 25 ~~~mm~I~VKt-l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 25 AATMIEVVCND-RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp CCCEEEEEEEC-SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCeEEEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 34457888886 3478889999999998763 345676643
No 59
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=36.40 E-value=48 Score=22.33 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=41.7
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCce
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKAC 135 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~ 135 (142)
.+..+|.|+. ..|+..++.+.+.+||.+. +++.|+++.- ..-+-.|.+ +.+...|.+-++.+|.
T Consensus 19 ~~mIqI~Vk~-~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~q----------QrLif~Gk~-LkD~~TL~dY~I~dgs 86 (93)
T 3plu_A 19 SHMIEVVVND-RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNK----------IVLQKGGSV-LKDHISLEDYEVHDQT 86 (93)
T ss_dssp -CEEEEEEEC-TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGG----------EEEEETTEE-CCTTSBTGGGTCCTTC
T ss_pred CceEEEEEEC-CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHH----------EEEEeCCEE-ccCcCCHHHcCCCCCC
Confidence 3457888886 4788899999999999863 3456665521 122235544 4445567766666775
Q ss_pred EE
Q 032345 136 TI 137 (142)
Q Consensus 136 ~L 137 (142)
.|
T Consensus 87 tL 88 (93)
T 3plu_A 87 NL 88 (93)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 60
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=35.89 E-value=64 Score=19.56 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=38.0
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
..+|.|+. .+|+...+++.+.+|+.+.= +..|++.... .-+..|.. ..+...|++-.+.+|..+
T Consensus 4 ~m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q----------rL~~~G~~-L~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 4 PLSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF----------WLTFEGKP-LEDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp CEEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE----------EEEETTEE-CCTTSBGGGGTCCTTCEE
T ss_pred CEEEEEEe-CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHE----------EEEECCEE-CCCCCcHHHCCCCCCCEE
Confidence 35788875 46888899999999987642 3456654221 11234433 223345665556666555
Q ss_pred e
Q 032345 138 L 138 (142)
Q Consensus 138 a 138 (142)
-
T Consensus 72 ~ 72 (79)
T 3phx_B 72 F 72 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 61
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=41.56 E-value=7.9 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.702 Sum_probs=15.0
Q ss_pred HHCCCCCCCCCCceecCCc
Q 032345 91 ESQNITLPFACRHGCCTSC 109 (142)
Q Consensus 91 ~~~GI~l~~~Cr~G~CGtC 109 (142)
-++|.++.+.|+. .||.|
T Consensus 23 ~~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 23 GRNGVKLRANCKK-TCGLC 40 (40)
Confidence 3789999999986 68877
No 62
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=34.51 E-value=86 Score=19.71 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=40.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCce
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKAC 135 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~ 135 (142)
....+|.|+. .+|+...+.+.+.+|+.+. .+..|++.... .-+..|.. ..+...|.+-.+.+|.
T Consensus 15 ~~~m~i~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rL~~~Gk~-L~D~~tL~~~gi~~g~ 82 (91)
T 3v6c_B 15 RGSMQIFVNT-LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQ----------RLIFAGKQ-LEDGRTLSDYNIQKES 82 (91)
T ss_dssp CCSEEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEE-CCTTCBTGGGTCCTTC
T ss_pred CCeEEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhE----------EEEECCeE-CCCcCcHHHCCCCCCC
Confidence 3456788875 3688889999999999863 34556665432 11234543 2334456665666666
Q ss_pred EEe
Q 032345 136 TIL 138 (142)
Q Consensus 136 ~La 138 (142)
.+.
T Consensus 83 ~i~ 85 (91)
T 3v6c_B 83 TLH 85 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 63
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=33.43 E-value=67 Score=21.02 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=25.3
Q ss_pred ccCCCCCCceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCC
Q 032345 54 GSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNIT 96 (142)
Q Consensus 54 ~~~~P~~~~~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~ 96 (142)
.|..+.+...+|+|+.. |....+++.++.||.+.- +..|++
T Consensus 17 ~~~~~~~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 17 LYFQGHPKIMKVTVKTP--KEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp ------CCCEEEEEECS--SCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred cccCCCCCeEEEEEEeC--CcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 34444555678888863 677889999999987632 344655
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=31.71 E-value=97 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 032345 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (142)
Q Consensus 61 ~~~~Vti~~~~~G~~~~~~v~~getLL~a 89 (142)
+..+|+|+. ..|++.++++++.+||.+.
T Consensus 16 ~~m~I~vkt-l~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 16 DMINLRLIL-VSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp TCEEEEEEC-TTSCEEEEEECTTSBHHHH
T ss_pred CeEEEEEEe-CCCCEEEEEeCCccHHHHH
Confidence 346788875 3678899999999998764
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=30.93 E-value=52 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCcEEEE-EeCCCChHHHH----HHHCCCCC
Q 032345 62 THKVTVHDRFRGVVHEF-LVPEDQYILHT----AESQNITL 97 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~-~v~~getLL~a----a~~~GI~l 97 (142)
..+|+|+. .|+.+.+ ++++++|+.+. .+..||+.
T Consensus 7 ~m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 7 GLPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp SCCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred eEEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 35677775 5777778 88999998764 34567653
No 66
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=29.81 E-value=83 Score=19.03 Aligned_cols=65 Identities=12% Similarity=-0.038 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
..+|.|+. .+|+...+.+.+.+|+.+. +++.|++... ..-+-.|..- .+...|++-..++|..+
T Consensus 3 ~m~i~vk~-~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~----------qrL~~~G~~L-~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS----------LRFLFEGQRI-ADNHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGG----------EEEEETTEEC-CTTCCHHHHTCCTTEEE
T ss_pred eEEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHHCCCccc----------EEEEECCEEe-CCCCCHHHcCCCCCCEE
Confidence 45777775 4688889999999998763 2455665421 1123356532 23345555556666655
Q ss_pred e
Q 032345 138 L 138 (142)
Q Consensus 138 a 138 (142)
-
T Consensus 71 ~ 71 (79)
T 2uyz_B 71 E 71 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 67
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=29.73 E-value=44 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.8
Q ss_pred EEEEeCCCChHHHHHHHCCCCCCCCCCceecCCceEEEecCccCCc
Q 032345 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~ 121 (142)
+++++.++.++||++..-. ..+||. +|.++| .|.....
T Consensus 45 y~v~~~~~~~vLd~L~~ik---~l~fr~----sCam~I-NG~~~la 82 (514)
T 3kwl_A 45 YFLEYQEDQYLLDLLKQLK---GVSYSE----NIALKI-NQIAVFE 82 (514)
T ss_dssp EEEECCTTCBHHHHHTTST---TCCCCS----SCCEEE-TTEEECS
T ss_pred EEEeCCCCCcHHHHHHHhh---hCeeec----cceEEE-CCEehhh
Confidence 4456678999999998765 566776 787776 6766544
No 68
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.11 E-value=54 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcEEEEEeC--CCChHHHHHHHCCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVP--EDQYILHTAESQNITL 97 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~--~getLL~aa~~~GI~l 97 (142)
+|+| +| ..++++ ++.||.+.+...|+++
T Consensus 2 ~I~v----NG--e~~e~~~~~~~Tl~~LL~~l~~~~ 31 (78)
T 2k5p_A 2 NLTV----NG--KPSTVDGAESLNVTELLSALKVAQ 31 (78)
T ss_dssp EEEE----TT--EEEECSSCSCEEHHHHHHHHTCSC
T ss_pred EEEE----CC--EEEEcCCCCCCcHHHHHHHcCCCC
Confidence 4555 67 466778 8999999999999883
No 69
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.06 E-value=26 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.5
Q ss_pred EEEEeCCCChHHHHHHHCCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITLP 98 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~ 98 (142)
..+.|.+|+||...|.+.|+.+.
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~ 38 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTME 38 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHH
T ss_pred EEEEECCCCcHHHHHHHHCcCHH
Confidence 45788999999999999988754
No 70
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=26.72 E-value=1.2e+02 Score=18.83 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=24.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCCC
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITL 97 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~l 97 (142)
..+|.|+. .+|+...+++.+.+|+.+.- +..|++.
T Consensus 5 ~m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 5 SLEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp EEEEEEEE-TTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred EEEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 45777776 36888899999999988643 3445544
No 71
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=26.57 E-value=68 Score=19.22 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=18.3
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+|+ .++++.|.|+++.+.+-+..+
T Consensus 9 ~g~--~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 9 KGE--IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp TCC--EEEECTTCBHHHHHHHHCSHH
T ss_pred CCC--EEEcCCCCcHHHHHHHHhhcc
Confidence 574 567899999999998765444
No 72
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=25.26 E-value=1.2e+02 Score=19.00 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
..+|.|+. .+|+...+++.+..||.+.- ...||+... ..-+..|.. ..+...|++-.+.+|..|
T Consensus 4 ~m~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~----------qrL~~~Gk~-L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL----------FWLTFEGKP-LEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEE-TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTT----------EEEESSSSC-CCTTSBHHHHHCSTTCEE
T ss_pred cEEEEEEC-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH----------EEEEECCEE-CCCCCcHHHcCCCCCCEE
Confidence 45777775 35777889999999987642 345655321 111234443 233345655555666655
Q ss_pred eE
Q 032345 138 LL 139 (142)
Q Consensus 138 aC 139 (142)
-.
T Consensus 72 ~l 73 (88)
T 2hj8_A 72 FM 73 (88)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=24.66 E-value=1.2e+02 Score=18.35 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHH
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHT 89 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~a 89 (142)
.+|+|+. .+|+...+++.++.|+.+.
T Consensus 6 m~i~vk~-~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 6 VTITLKT-LQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp EEEEEEE-TTSCEEEEEECTTSBHHHH
T ss_pred EEEEEEE-CCCCEEEEEECCCCCHHHH
Confidence 5677775 3577788999999998764
No 74
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=24.53 E-value=61 Score=21.80 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=23.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHH----HCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAE----SQNIT 96 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~----~~GI~ 96 (142)
.|+|.. .+|+...+.+.++.+|.+.++ ..|++
T Consensus 11 ~v~Vl~-~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLA-PNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEEC-TTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEc-CCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 466654 468778899999999888665 55664
No 75
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=24.47 E-value=1.1e+02 Score=19.67 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=38.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCCCCCCCceecCCceEEEecCccCCcccCCCChhhhcCceEE
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKACTI 137 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l~~~Cr~G~CGtC~v~v~~G~v~~~e~~~Ls~~e~~~g~~L 137 (142)
..+|.|+. .+|+...+.+.+.+||.+. .+..||++... .-+..|..- .+...|.+-.+.+|..+
T Consensus 22 ~m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------rLi~~Gk~L-~D~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 22 PMQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ----------RLIFAGKQL-EDGRTLSDYNIQKESTL 89 (98)
T ss_dssp CCEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC----------EEEETTEEC-CTTCBSGGGTCCTTEEE
T ss_pred eEEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE----------EEEECCEEC-CCCCcHHHCCCCCCCEE
Confidence 45788875 3688889999999999763 24456554321 122345432 33445666556666655
Q ss_pred e
Q 032345 138 L 138 (142)
Q Consensus 138 a 138 (142)
.
T Consensus 90 ~ 90 (98)
T 4hcn_B 90 H 90 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 76
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=23.65 E-value=94 Score=19.43 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=18.8
Q ss_pred CCcEEEEEeCCCChHHHHHHHCCCCC
Q 032345 72 RGVVHEFLVPEDQYILHTAESQNITL 97 (142)
Q Consensus 72 ~G~~~~~~v~~getLL~aa~~~GI~l 97 (142)
+| ..+++ ++.||.+.+++.|++.
T Consensus 6 NG--~~~e~-~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 6 NG--EQREV-QSASVAALMTELDCTG 28 (73)
T ss_dssp TT--EEECC-CCSBHHHHHHHTTCCS
T ss_pred CC--EEEEc-CCCcHHHHHHHcCCCC
Confidence 57 45667 8899999999999873
No 77
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=23.41 E-value=1.1e+02 Score=18.13 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCChHHHHH----HHCCCC
Q 032345 63 HKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNIT 96 (142)
Q Consensus 63 ~~Vti~~~~~G~~~~~~v~~getLL~aa----~~~GI~ 96 (142)
.+|+|+. +|+...++++++.|+.+.- ...|++
T Consensus 5 m~i~vk~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 5 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 5677775 6777889999999987633 344554
No 78
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.60 E-value=88 Score=20.02 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=24.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCChHHHHHHHCCCCCCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC 101 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~getLL~aa~~~GI~l~~~C 101 (142)
.|.|.. ++|. .++.+.|.|.+|.|.+-+-.+...|
T Consensus 7 ~i~v~t-P~G~--~~~lp~GaT~~D~A~~Ih~~lg~~~ 41 (78)
T 3hvz_A 7 EVFVFT-PKGD--VISLPIGSTVIDFAYAIHSAVGNRM 41 (78)
T ss_dssp EEEEEC-TTSC--EEEEETTCBHHHHHHHHCHHHHHTE
T ss_pred eEEEEC-CCCC--EEEecCCCCHHHHHHHhhhhhhcce
Confidence 455553 5674 6788999999999987655554444
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=22.49 E-value=1.2e+02 Score=21.31 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCChHHH----HHHHCCCCC
Q 032345 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILH----TAESQNITL 97 (142)
Q Consensus 60 ~~~~~Vti~~~~~G~~~~~~v~~getLL~----aa~~~GI~l 97 (142)
....+|.|+. .+|+...+++.+.+||.+ .....||+.
T Consensus 18 ~~~m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 18 GSHMQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp -CCEEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCcEEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3456788875 368888999999999987 344556654
No 80
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=22.04 E-value=58 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.0
Q ss_pred EEEEeCCCChHHHHHHHCCCCCC
Q 032345 76 HEFLVPEDQYILHTAESQNITLP 98 (142)
Q Consensus 76 ~~~~v~~getLL~aa~~~GI~l~ 98 (142)
..+++++|.|+.+++++.|+.-.
T Consensus 28 ~~~~v~~g~TV~daI~~~gi~~~ 50 (97)
T 2hj1_A 28 KSFQVDEGITVQTAITQSGILSQ 50 (97)
T ss_dssp EEEEEETTCBHHHHHHHHTHHHH
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc
Confidence 45678899999999999998543
No 81
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.85 E-value=1.6e+02 Score=20.20 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~a 89 (142)
..+|+|+. ..|++.+|++.+.+||.+.
T Consensus 16 ~m~I~vKt-l~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 16 MINLRLIL-VSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp SEEEEEEC-SSSCEEEEEECTTCBHHHH
T ss_pred eEEEEEEe-CCCCEEEEEECCcCHHHHH
Confidence 36777775 3578899999999998764
No 82
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=20.86 E-value=91 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcEEEEEeCCC-ChHHHHHHHCCCC
Q 032345 64 KVTVHDRFRGVVHEFLVPED-QYILHTAESQNIT 96 (142)
Q Consensus 64 ~Vti~~~~~G~~~~~~v~~g-etLL~aa~~~GI~ 96 (142)
+|+| +| ..++++++ .||.+.+...+++
T Consensus 22 ~I~v----NG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 22 MLQL----NG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp CEEE----TT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred EEEE----CC--EEEECCCCCCcHHHHHHHhCCC
Confidence 5666 67 56778888 9999999998865
No 83
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.83 E-value=1.7e+02 Score=19.63 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHH
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILH 88 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~ 88 (142)
..+|+|.. .+|+..+++++++.|+.+
T Consensus 7 ~M~I~Vk~-l~g~~~~v~V~~~~TV~d 32 (105)
T 1v2y_A 7 GMTVRVCK-MDGEVMPVVVVQNATVLD 32 (105)
T ss_dssp SEEEEEEC-SSSCEEEEEECTTCBHHH
T ss_pred cEEEEEEe-cCCCEEEEEECCCChHHH
Confidence 35788864 478889999999999875
No 84
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.76 E-value=1.5e+02 Score=19.16 Aligned_cols=35 Identities=11% Similarity=-0.098 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCcEE-EEEeCCCChHHHH----HHHCCCCCC
Q 032345 62 THKVTVHDRFRGVVH-EFLVPEDQYILHT----AESQNITLP 98 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~-~~~v~~getLL~a----a~~~GI~l~ 98 (142)
..+|+|+. .|+.+ .+++.+++|+.+. ....||+..
T Consensus 7 ~m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 7 GYSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45677775 57778 5999999998774 345676643
No 85
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=20.71 E-value=1.6e+02 Score=18.12 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCChHHHH----HHHCCCCC
Q 032345 62 THKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITL 97 (142)
Q Consensus 62 ~~~Vti~~~~~G~~~~~~v~~getLL~a----a~~~GI~l 97 (142)
..+|.|+. .+|+...+++.+.+|+.+. .+..|++.
T Consensus 17 ~m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 17 SLEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp EEEEEEEE-TTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred eEEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 35778876 3578888999999999863 23456554
Done!