BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032347
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=rimP PE=3 SV=1
Length = 171
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K+G ++D +A T LD +A I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103
Query: 63 AMYVKYVGETVTT--GSPS 79
++VK G T GSP+
Sbjct: 104 RVHVKAYGPVAGTAPGSPA 122
>sp|B4UHF7|RIMP_ANASK Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain K)
GN=rimP PE=3 SV=1
Length = 171
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K+G ++D +A T LD A++ I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103
Query: 63 AMYVKYVGETVTT--GSPS 79
++VK G T G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122
>sp|B8JFY3|RIMP_ANAD2 Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=rimP PE=3 SV=1
Length = 171
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K+G ++D +A T LD A++ I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRYAGQ 103
Query: 63 AMYVKYVGETVTT--GSPS 79
++VK G T G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122
>sp|A7H9F0|RIMP_ANADF Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=rimP PE=3 SV=1
Length = 171
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +ED +A LD + I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKPGGVGIEDCQAVSRLVDPILD---VEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQ 103
Query: 63 AMYVKYVGETVTT--GSPSESDGVFRLISF 90
+VK G T GSP+ + L+ +
Sbjct: 104 RAHVKAYGPVAGTAPGSPARKNWTGVLVGY 133
>sp|Q1DAM9|RIMP_MYXXD Ribosome maturation factor RimP OS=Myxococcus xanthus (strain DK
1622) GN=rimP PE=3 SV=1
Length = 161
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 17 CTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVG 70
CT +D + ++ IP +LEVSSPGV+R +R P ER K + + VK G
Sbjct: 59 CTQVSRAVDPSLDVEDFIPHEYNLEVSSPGVDRPLRKPTHFERVKGQQVKVKTFG 113
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rimP
PE=3 SV=1
Length = 162
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+++K+GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 43 LTDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVLRLPEDLIRFQ 98
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar
Patoc (strain Patoc 1 / Ames) GN=rimP PE=3 SV=1
Length = 162
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+++K+GS S+ED C T RL E + +L+VSS G ERV+R+P +L RF+
Sbjct: 43 LTDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVLRLPEDLIRFQ 98
>sp|B8CW69|RIMP_HALOH Ribosome maturation factor RimP OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=rimP PE=3 SV=1
Length = 159
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N G +++ E +LDE + I E+ LEVSSPG+ER ++ + +RF
Sbjct: 41 IENPEGEVTLDHCENVSKNLDEKLDEVD---PIQESYILEVSSPGIERPLKKKEDFDRFS 97
Query: 61 DRAMYVK 67
+ Y+K
Sbjct: 98 GKLAYIK 104
>sp|C5D9C5|RIMP_GEOSW Ribosome maturation factor RimP OS=Geobacillus sp. (strain WCH70)
GN=rimP PE=3 SV=1
Length = 157
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 23 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESD 82
+LDE + IP N LEVSSPG ER ++ P + + + +Y+K T P E +
Sbjct: 63 KLDEVD---PIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIK-------TYEPIEGE 112
Query: 83 GVF--RLISFDMETECCT 98
F LI FD T T
Sbjct: 113 KEFEGELIGFDGTTVSVT 130
>sp|A4J5X6|RIMP_DESRM Ribosome maturation factor RimP OS=Desulfotomaculum reducens
(strain MI-1) GN=rimP PE=3 SV=1
Length = 153
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G ++D + LDE + +P+ LEVSSPG+ER ++ P + E+F
Sbjct: 44 DKPGGIELDDCQGVSEKIDTLLDEID---PVPQAYFLEVSSPGIERPLKKPQDFEKFNGH 100
Query: 63 AMYVKYVGETVTTGSPSESDGVF--RLISFDME 93
+ +TT +P F +L+ ++ E
Sbjct: 101 LV-------NITTFAPINGSKNFIGKLLDYNEE 126
>sp|B1I359|RIMP_DESAP Ribosome maturation factor RimP OS=Desulforudis audaxviator (strain
MP104C) GN=rimP PE=3 SV=1
Length = 154
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +++D EA LD+ + IP + LEVSSPG+ER ++ + RFK R
Sbjct: 44 DKPGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPLKRAEDYVRFKGR 100
Query: 63 AMYV 66
+ +
Sbjct: 101 LVQI 104
>sp|Q3AB94|RIMP_CARHZ Ribosome maturation factor RimP OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rimP PE=3
SV=1
Length = 154
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K ++D + F LDE + IP++ LEVSSPG+ER ++ + E+F R
Sbjct: 45 DKDEGVDLDDCQNFSERIGVILDEED---PIPQSYYLEVSSPGIERPLKKLADFEKFAGR 101
Query: 63 AMYVK 67
+K
Sbjct: 102 EAQIK 106
>sp|A5GF83|RIMP_GEOUR Ribosome maturation factor RimP OS=Geobacter uraniireducens (strain
Rf4) GN=rimP PE=3 SV=1
Length = 159
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 61
+K G +++D C + L E ++ I E+ SLEVSSPG++R ++ + +RFK
Sbjct: 44 DKEGGVNLDD----CASVSRELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFKG 99
Query: 62 RAMYVK 67
R + ++
Sbjct: 100 RLVKIR 105
>sp|B9K861|RIMP_THENN Ribosome maturation factor RimP OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=rimP PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + +RF
Sbjct: 43 IDNPVGYVSVRDCELFSRELERFLDREDL---IEHSYTLEVSSPGLDRPLRGPKDYQRFT 99
Query: 61 DR-AMYVKYVGETVTTGSPSESDGV 84
+ A + G+T S DG+
Sbjct: 100 GKLAKIITKDGKTFIGRIESFVDGI 124
>sp|Q5LWL1|RIMP_RUEPO Ribosome maturation factor RimP OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=rimP PE=3 SV=1
Length = 208
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 1 MSNK-SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 59
M++K G ++D A A LD + I + +LEVSSPG++R L R
Sbjct: 46 MADKPDGGIEVDDCAAISNAVSATLD---VEDPILDAYTLEVSSPGIDR------PLTRL 96
Query: 60 KDRAMYVKYVGETVTT----------GSPSESDGVFRLISFDMETECCTWGL 101
KD M+ Y + TT G + +G LI+ D E T GL
Sbjct: 97 KDFEMFEGYEAKIETTEMIDGRRRFRGELAGIEGNEVLINLDQNGETVTIGL 148
>sp|A6TRL1|RIMP_ALKMQ Ribosome maturation factor RimP OS=Alkaliphilus metalliredigens
(strain QYMF) GN=rimP PE=3 SV=1
Length = 152
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +++D + +LDEA+ I EN LEVSSPG++R ++ ++ +FK
Sbjct: 42 DKPGGITLDDCQKVSEGLSKKLDEAD---PIVENYFLEVSSPGLDRPLKREVDFLKFKGE 98
Query: 63 AMYVK 67
+ +K
Sbjct: 99 MIELK 103
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 15 AFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERF 59
A C T ++ E E +IP + +LEVSSPGVER + P + +RF
Sbjct: 51 ADCQTVSDKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRF 96
>sp|A9G896|RIMP_SORC5 Ribosome maturation factor RimP OS=Sorangium cellulosum (strain So
ce56) GN=rimP PE=3 SV=1
Length = 208
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+ G ++ED + LD ++ IP + +LEVSSPG++R +R E RF R
Sbjct: 54 DAGGGVTLEDCADVSRDVSSVLDVEDL---IPNHYNLEVSSPGLDRRLRTAAEFARFLGR 110
Query: 63 AMYVKYV 69
VK
Sbjct: 111 TAKVKLA 117
>sp|Q67P90|RIMP_SYMTH Ribosome maturation factor RimP OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=rimP PE=3 SV=1
Length = 160
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +D EA A+LDE I + P + EVSSPG++R PL+ E
Sbjct: 46 DKEGGVGFDDCEALSRVVDAQLDE--ILPNPPYDF-FEVSSPGLDR----PLKRE----- 93
Query: 63 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN---REKAGKGRPLS- 118
A + +YVG V + + DG SF E + GL D R+ E G+G+ ++
Sbjct: 94 ADFARYVGHKVVVTTYAPVDG---QKSFVGELQ----GLVDGRVTLTLTEGKGRGQTIAL 146
Query: 119 --KKQREWRLNTTF 130
K+ RL F
Sbjct: 147 DRKQVASARLYVEF 160
>sp|B2G6V2|RIMP_LACRJ Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
JCM 1112) GN=rimP PE=3 SV=1
Length = 157
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
NK G ++ED LD E IP+ LEVSSPG ER ++ + +R D
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVE-PDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDH 100
Query: 63 ----AMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTWGLADVRINREKAGKGR 115
++Y + G+ V G+ ++ SD L D + I+R+K + R
Sbjct: 101 YIHISLYQQINGQKVYEGTLTQLSDKEITLDYLDKTRH------RQITIDRQKIAQAR 152
>sp|A5VJD6|RIMP_LACRD Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
DSM 20016) GN=rimP PE=3 SV=1
Length = 157
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
NK G ++ED LD E IP+ LEVSSPG ER ++ + +R D
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVE-PDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDH 100
Query: 63 ----AMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTWGLADVRINREKAGKGR 115
++Y + G+ V G+ ++ SD L D + I+R+K + R
Sbjct: 101 YIHISLYQQINGQKVYEGTLTQLSDKEITLDYLDKTRH------RQITIDRQKIAQAR 152
>sp|B7GG79|RIMP_ANOFW Ribosome maturation factor RimP OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rimP PE=3 SV=2
Length = 156
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 23 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 67
+LDE + IP N LEVSSPG ER ++ + ER + +YVK
Sbjct: 62 KLDEID---PIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVK 103
>sp|B7K5I1|RIMP_CYAP8 Ribosome maturation factor RimP OS=Cyanothece sp. (strain PCC 8801)
GN=rimP PE=3 SV=1
Length = 153
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N G S++D EA A LDE+++ + LE+SSPG+ R + E FK
Sbjct: 42 IRNSQGETSLDDCEAVSRALEAVLDESQVMGG---SYVLEISSPGISRQLHSDREFISFK 98
Query: 61 DRAMYV 66
A+ V
Sbjct: 99 GFAVIV 104
>sp|A8FDC7|RIMP_BACP2 Ribosome maturation factor RimP OS=Bacillus pumilus (strain
SAFR-032) GN=rimP PE=3 SV=1
Length = 157
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 20/101 (19%)
Query: 23 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETV--TTGSPSE 80
+LDEA+ I +N LEVSSPG ER PL K +A + K +G+ V T P +
Sbjct: 63 KLDEAD---PISQNYFLEVSSPGAER----PL-----KKKADFEKALGKNVFMKTYEPID 110
Query: 81 SDGVF--RLISFDMETECCTWGL----ADVRINREKAGKGR 115
+ F L SFD E T + ++ I EK R
Sbjct: 111 GEKAFEGELTSFDGEIATVTVKIKTRKKEINIPYEKIANAR 151
>sp|P32726|RIMP_BACSU Ribosome maturation factor RimP OS=Bacillus subtilis (strain 168)
GN=rimP PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 23 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSP 78
+LDEA+ I +N LEVSSPG ER ++ + E+ + +Y+K G V G
Sbjct: 63 KLDEAD---PISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGEL 119
Query: 79 SESDG 83
+E DG
Sbjct: 120 AEFDG 124
>sp|C1F695|RIMP_ACIC5 Ribosome maturation factor RimP OS=Acidobacterium capsulatum
(strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rimP PE=3
SV=1
Length = 201
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 11 EDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 59
ED AF T + LD E+ E T LEVSSPG++R ++ + ERF
Sbjct: 84 EDCSAFSTDFGTLLDVEELMPGASEYT-LEVSSPGLDRKLQSRADYERF 131
>sp|B1LAP5|RIMP_THESQ Ribosome maturation factor RimP OS=Thermotoga sp. (strain RQ2)
GN=rimP PE=3 SV=1
Length = 150
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF- 59
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + RF
Sbjct: 43 IDNPMGYVSVRDCELFSREMERFLDREDL---IEHSYTLEVSSPGLDRPLRGPRDYVRFT 99
Query: 60 --------KDRAMYVKYVGETVTTGSPSESDG 83
KD ++ + E+ G+ + SDG
Sbjct: 100 GKLAKIVTKDGKTFIGRI-ESFVDGTITISDG 130
>sp|A6LMV9|RIMP_THEM4 Ribosome maturation factor RimP OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=rimP PE=3 SV=1
Length = 147
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N S +D E LD+ I IP L VSSPG+ R +R + ERF
Sbjct: 41 IDNPYDYISTKDCENVSRKLEFELDKINI---IPNKYYLTVSSPGLNRPLRNVKDFERFT 97
Query: 61 DRA--------MYVKYVGETVTTGSPSESDGVFRLISFDME 93
+ Y+ Y+ V E+DG F I F E
Sbjct: 98 GKKAKIKTRENTYIGYIKNVVDNIITFETDGKF--IEFKFE 136
>sp|B2GBN3|RIMP_LACF3 Ribosome maturation factor RimP OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=rimP PE=3 SV=1
Length = 159
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G ++ED +LD A+ IP+ LEVSSPG ER ++ ++ +R D+
Sbjct: 44 DKEGGITLEDCALVSDQLSEQLDSAD-PDPIPQAYFLEVSSPGAERPLKKEVDYQRALDQ 102
Query: 63 ----AMYVKYVGETVTTG 76
++Y + G V G
Sbjct: 103 YVNVSLYQQIDGHKVFEG 120
>sp|A0Q0R0|RIMP_CLONN Ribosome maturation factor RimP OS=Clostridium novyi (strain NT)
GN=rimP PE=3 SV=1
Length = 154
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAM 64
S ++ED E LDE + I ++ LEVSSPG+ERV+ L ++ + +
Sbjct: 47 SKGINLEDCEKVSRKVSDILDEKD---PISDSYYLEVSSPGIERVLYTEEHLHKYTNNQI 103
Query: 65 YVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 113
VK + GS E G LISF+ +T + I RE+ K
Sbjct: 104 IVKLA--KLFEGS-REHQG--NLISFNDDTVTIEKENESINIPRERIKK 147
>sp|Q2RJM9|RIMP_MOOTA Ribosome maturation factor RimP OS=Moorella thermoacetica (strain
ATCC 39073) GN=rimP PE=3 SV=1
Length = 158
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 9 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 67
++D E A LDE + IP + LEVSSPG+ER ++ + RF R + ++
Sbjct: 48 GLDDCEQVSRVVSALLDEKD---PIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLR 103
>sp|Q39VA9|RIMP_GEOMG Ribosome maturation factor RimP OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=rimP PE=3 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K+G +++D + LD + I EN +LEVSSPG+ R ++ + ER++ R
Sbjct: 44 DKAGGITLDDCALVSREFSEILD---VEDFISENYTLEVSSPGLNRPLKRESDYERYRGR 100
Query: 63 AMYVK 67
+ V+
Sbjct: 101 LVKVR 105
>sp|C0ZF55|RIMP_BREBN Ribosome maturation factor RimP OS=Brevibacillus brevis (strain 47
/ JCM 6285 / NBRC 100599) GN=rimP PE=3 SV=1
Length = 152
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N++G+ ++D +LDE + IP LEVSSPG ER +R K
Sbjct: 41 IDNETGNIDIDDCRLVSEKLSEKLDEVD---PIPTAYFLEVSSPGAERPLR--------K 89
Query: 61 DRAMYVKYVGETV--TTGSPSESDGVF--RLISFD 91
D+ + K VG V TT P E F L+S++
Sbjct: 90 DKD-FTKAVGRNVHITTKEPIEGATTFEGELVSYE 123
>sp|A7Z4T0|RIMP_BACA2 Ribosome maturation factor RimP OS=Bacillus amyloliquefaciens
(strain FZB42) GN=rimP PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 23 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSP 78
+LDEA+ I +N LEVSSPG ER ++ + E+ + +Y+K G V G
Sbjct: 63 KLDEAD---PITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKL 119
Query: 79 SESDG 83
+E DG
Sbjct: 120 AEFDG 124
>sp|B7IDT7|RIMP_THEAB Ribosome maturation factor RimP OS=Thermosipho africanus (strain
TCF52B) GN=rimP PE=3 SV=1
Length = 148
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N S +D E +LD+ +I IP+ L VSSPG++R +R + +RF
Sbjct: 41 IDNPLDYVSTKDCENISREVEFQLDKLDI---IPQRYYLTVSSPGLDRPLRSIDDFKRFI 97
Query: 61 DRAMYVKYVGETVTTGSPSESDGVFRL 87
+ + +K ET+ D V L
Sbjct: 98 NNKVKIKLENETIIGYIKDVKDSVIFL 124
>sp|Q74CT6|RIMP_GEOSL Ribosome maturation factor RimP OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=rimP PE=3 SV=1
Length = 159
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G S++D A LD + I EN +LEVSSPG+ R ++ + ER+ R
Sbjct: 44 DKPGGISLDDCAAVSRELSEILD---VEDFIRENYTLEVSSPGLNRPLKKEADYERYAGR 100
Query: 63 AMYVK 67
+ V+
Sbjct: 101 LVKVR 105
>sp|B2A393|RIMP_NATTJ Ribosome maturation factor RimP OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rimP
PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 9 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKY 68
++D E + LDE + IP + LEVSSPG ER PL K + +V +
Sbjct: 50 GLDDCELVSNSLDQLLDEHD---PIPHSYVLEVSSPGAER----PL-----KKKKDFVNF 97
Query: 69 VGETVTTGSPSESDG--VFRLISFDMETECC---TWGLADVRINREKAGKGRPL 117
G+ V + + DG F+ +E E T+ +V+I +K K L
Sbjct: 98 AGKKVQIKTYVKLDGRKNFKGKLLGLEDEHVVLETFNSGEVKIPLDKIAKANLL 151
>sp|A1AML8|RIMP_PELPD Ribosome maturation factor RimP OS=Pelobacter propionicus (strain
DSM 2379) GN=rimP PE=3 SV=1
Length = 161
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +++D LD ++ IP SLEVSSPG++R ++ + ERF R
Sbjct: 46 DKEGGVTLDDCADLSRELSTLLDVEDL---IPCEYSLEVSSPGLDRPLKSEADYERFSGR 102
Query: 63 AMYVK 67
+ V+
Sbjct: 103 LIKVR 107
>sp|B0K9Q4|RIMP_THEP3 Ribosome maturation factor RimP OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=rimP PE=3
SV=1
Length = 151
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 58
+K G +++D + RLDE + I + LEVSSPG++R ++ P + ER
Sbjct: 42 DKEGGITLDDCQLVSEYLSDRLDEVD---PIEHSYILEVSSPGLDRPLKKPRDFER 94
>sp|B0JU70|RIMP_MICAN Ribosome maturation factor RimP OS=Microcystis aeruginosa (strain
NIES-843) GN=rimP PE=3 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N +G +ED E LD EI +P LE+SSPG+ R + E + FK
Sbjct: 42 IRNLAGDTGLEDCEQMSRALETALDSQEI---LPGAYVLEISSPGISRQLSSEREFQSFK 98
Query: 61 DRAMYVKYVGETVTTGSPSE 80
V G+ + G P E
Sbjct: 99 --GFPVIVTGQD-SQGKPQE 115
>sp|B3PI94|RIMP_CELJU Ribosome maturation factor RimP OS=Cellvibrio japonicus (strain
Ueda107) GN=rimP PE=3 SV=2
Length = 164
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 9 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKY 68
S++D E A LD + I +LEVSSPG++R PL E A Y +Y
Sbjct: 48 SLDDCERVSRQISAVLD---VEDPIDGEYTLEVSSPGLDR----PLYTE-----AQYARY 95
Query: 69 VGETVT 74
VGETV
Sbjct: 96 VGETVN 101
>sp|B0K1E0|RIMP_THEPX Ribosome maturation factor RimP OS=Thermoanaerobacter sp. (strain
X514) GN=rimP PE=3 SV=1
Length = 151
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELER 58
+K G +++D + RLDE + I + LEVSSPG++R ++ P + ER
Sbjct: 42 DKEGGITLDDCQLVSEYLSDRLDEVD---PIEHSYILEVSSPGLDRPLKKPRDFER 94
>sp|A3DE48|RIMP_CLOTH Ribosome maturation factor RimP OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=rimP PE=3 SV=1
Length = 154
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
+K G +++D + LD+ + IP + LEVSSPG++R ++ + ERFK
Sbjct: 44 DKPGGITIDDCQVVSEEISDILDKED---PIPHSYFLEVSSPGLDRPLKKESDFERFKGE 100
Query: 63 AMYVK 67
+ VK
Sbjct: 101 LVEVK 105
>sp|B1GZN4|RIMP_UNCTG Ribosome maturation factor RimP OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=rimP PE=3 SV=1
Length = 151
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 59
+K ++ D E + A LDE++I K ++ LE+SSPG +RV++ RF
Sbjct: 41 DKDSGVTISDCENISCIFGAFLDESDILK---DSYVLEISSPGFKRVLKSEKSFRRF 94
>sp|A5ILL0|RIMP_THEP1 Ribosome maturation factor RimP OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=rimP PE=3 SV=1
Length = 150
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + RF
Sbjct: 43 IDNPVGYVSVRDCELFSREIERFLDREDL---IEHSYTLEVSSPGLDRPLRGPKDYVRFT 99
Query: 61 DR-AMYVKYVGETVTTGSPSESDG 83
+ A V G+T S DG
Sbjct: 100 GKLAKIVTKDGKTFIGRIESFVDG 123
>sp|Q8RHJ4|RIMP_FUSNN Ribosome maturation factor RimP OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rimP PE=3 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 14/82 (17%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ N +G ++ED C+ +++ E ++ + I LEVSSPG+ER P L++ +
Sbjct: 44 IENLNGDLNIED----CSKLSSKI-EDKVEELIEHKFFLEVSSPGLER----P--LKKLE 92
Query: 61 DRAMYVKYVGETVTTGSPSESD 82
D Y +++GE +T + D
Sbjct: 93 D---YTRFIGEKITLHLKHKLD 111
>sp|Q0AFJ1|RIMP_NITEC Ribosome maturation factor RimP OS=Nitrosomonas eutropha (strain
C91) GN=rimP PE=3 SV=2
Length = 143
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
+ K G+ ++ D C L + ++I N LEVSSPG++R PL K
Sbjct: 34 VDKKDGAITLAD----CVAVSNHLGQLLAVENIDYN-RLEVSSPGLDR----PL-----K 79
Query: 61 DRAMYVKYVGETV 73
RA +V++VGE++
Sbjct: 80 KRADFVRFVGESI 92
>sp|B8HG52|RIMP_ARTCA Ribosome maturation factor RimP OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=rimP PE=3 SV=2
Length = 205
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 4 KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 63
++G S++ I LD A + P + LEVSSPGV R + P R K R
Sbjct: 70 ETGGVSLDVIADISKVLSDALDNDPGADTRPYD--LEVSSPGVGRPLTEPRHWHRAKGRI 127
Query: 64 MYVKYV-GETVTTGSPSESDGVFRLI 88
VK + GE VT S DG L+
Sbjct: 128 ATVKVIQGENVTGRIQSVDDGGVTLV 153
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP
PE=3 SV=1
Length = 162
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 17 CTTYRARLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTT 75
C +L E E+ + P+ + +L+VSS G ER + +P +L+RF+ + + + E
Sbjct: 55 CEQVSRKLKE-ELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEE--- 110
Query: 76 GSPSESDGVFRLISFD 91
S E +G+FR+++ D
Sbjct: 111 -SEKEQEGIFRVVNRD 125
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rimP PE=3 SV=1
Length = 162
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 17 CTTYRARLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTT 75
C +L E E+ + P+ + +L+VSS G ER + +P +L+RF+ + + + E
Sbjct: 55 CEQVSRKLKE-ELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEE--- 110
Query: 76 GSPSESDGVFRLISFD 91
S E +G+FR+++ D
Sbjct: 111 -SEKEQEGIFRVVNRD 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,162,661
Number of Sequences: 539616
Number of extensions: 1945928
Number of successful extensions: 5174
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 5106
Number of HSP's gapped (non-prelim): 187
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)