Query 032347
Match_columns 142
No_of_seqs 136 out of 1198
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 21:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032347.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032347hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ib8a2 d.52.4.1 (A:1-90) Hypo 99.7 4.9E-18 3.6E-22 115.9 4.2 44 1-47 45-90 (90)
2 d1ib8a1 b.38.2.1 (A:91-164) Hy 99.6 7.3E-16 5.3E-20 101.0 7.8 69 48-141 1-71 (74)
3 d1ycya1 b.38.1.4 (A:5-70) Hypo 78.9 2.3 0.00017 25.2 5.1 59 54-138 5-65 (66)
4 d1mgqa_ b.38.1.1 (A:) Archaeal 58.5 8.3 0.0006 22.7 4.6 34 47-94 5-40 (74)
5 d1n9ra_ b.38.1.1 (A:) Small nu 53.8 5.4 0.0004 23.4 3.0 28 57-94 2-31 (68)
6 d1ljoa_ b.38.1.1 (A:) Archaeal 48.1 11 0.00079 22.4 3.8 30 55-94 9-40 (75)
7 d1i4k1_ b.38.1.1 (1:) Archaeal 47.5 11 0.0008 22.0 3.8 30 54-94 6-37 (72)
8 d1i8fa_ b.38.1.1 (A:) Archaeal 46.6 10 0.00074 22.3 3.5 30 54-94 5-36 (71)
9 d1h641_ b.38.1.1 (1:) Archaeal 46.5 10 0.00076 22.0 3.5 28 56-94 7-36 (71)
10 d1qd1a1 d.58.34.1 (A:2-180) Fo 44.0 6.1 0.00045 27.9 2.4 39 6-48 96-134 (179)
11 d2pi2e1 b.40.4.3 (E:3-117) Rep 41.1 11 0.00081 24.3 3.3 45 48-98 7-52 (115)
12 d1d3ba_ b.38.1.1 (A:) D3 core 41.0 15 0.0011 21.4 3.7 28 56-94 7-36 (72)
13 d1b24a2 d.95.2.1 (A:100-179) D 38.8 4.9 0.00036 24.5 1.0 36 10-45 33-70 (80)
14 d1th7a1 b.38.1.1 (A:3-78) Arch 38.4 16 0.0012 21.5 3.5 30 54-94 10-41 (76)
15 d2fwka1 b.38.1.1 (A:24-115) U6 34.8 15 0.0011 22.4 3.0 28 56-94 10-39 (92)
16 d1vlfn1 b.3.5.1 (N:196-274) Tr 30.4 8.5 0.00062 23.1 1.1 13 34-46 47-59 (79)
17 d1m5q1_ b.38.1.1 (1:) Sm-Like 27.1 33 0.0024 22.5 3.9 30 54-93 3-33 (127)
18 d1b34a_ b.38.1.1 (A:) D1 core 26.6 36 0.0026 20.1 3.7 28 56-93 6-34 (80)
19 d1uwya1 b.3.2.1 (A:297-403) Ca 26.4 11 0.00081 23.2 1.2 14 33-46 43-56 (107)
No 1
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.69 E-value=4.9e-18 Score=115.89 Aligned_cols=44 Identities=27% Similarity=0.492 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhh--hhhcCCCCCCeEEEEecCCCC
Q 032347 1 MSNKSGSPSMEDIEAFCTTYRARLDE--AEIAKSIPENTSLEVSSPGVE 47 (142)
Q Consensus 1 liD~~~gvslddc~~vSr~i~~~LD~--~d~~~~i~~~Y~LEVSSPGie 47 (142)
+||+++||++|||+.+||.|+..||. ++ +|+++|+|||||||+|
T Consensus 45 ~ID~~~gv~iddC~~vSr~is~~LD~~e~d---~i~~~Y~LEVSSPGld 90 (90)
T d1ib8a2 45 FVDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLE 90 (90)
T ss_dssp EEECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSS
T ss_pred EEECCCCcCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEeeCCCCC
Confidence 47999999999999999999999996 44 8999999999999996
No 2
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.61 E-value=7.3e-16 Score=100.96 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCcccccccee
Q 032347 48 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 125 (142)
Q Consensus 48 RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~ 125 (142)
|||++++||+||+|+.|+|+++. |++|+++| .|.+++++.+++++.. +++ ...
T Consensus 1 RpL~~~~~f~r~~G~~v~v~l~~-------p~~g~k~f~G~L~~~~~~~i~l~~~~-----------~~~-------~~~ 55 (74)
T d1ib8a1 1 RPLKTKDAVAGAVGKYIHVGLYQ-------AIDKQKVFEGTLLAFEEDELTMEYMD-----------KTR-------KKT 55 (74)
T ss_dssp SCCSSHHHHHHHCSEEEEEECSS-------CSSSCSEEEEEEEEEETTEEEEEEEC-----------SSC-------EEE
T ss_pred CCcCCHHHHHHhCCCEEEEEEec-------ccCCceEEEEEEEeecCCeEEEEEec-----------Ccc-------cEE
Confidence 89999999999999999999999 99999999 9999999999988641 111 115
Q ss_pred eeecccccceeEEeec
Q 032347 126 LNTTFDSLRLVRLHSD 141 (142)
Q Consensus 126 ~~ip~~~I~karl~~~ 141 (142)
++|||++|++|||.++
T Consensus 56 ~~i~~~~I~kArL~ve 71 (74)
T d1ib8a1 56 VQIPYSLVSKARLAVK 71 (74)
T ss_dssp EEECSSCCSSCEEECS
T ss_pred EEEcHHHheeEEEEEE
Confidence 8999999999999986
No 3
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=78.90 E-value=2.3 Score=25.22 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=37.7
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeeccc
Q 032347 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD 131 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~ 131 (142)
+-++++.|+.|-|.... .-.| .|.+|+++.+-+. .+.|+.-| ||| .+-+.++
T Consensus 5 ktL~~WKg~kvAv~vgs-----------ehSFtGiledFDeEviLL~-dV~D~~GN-----k~k---------~llv~id 58 (66)
T d1ycya1 5 KVLKEWKGHKVAVSVGG-----------DHSFTGTLEDFDEEVILLK-DVVDVIGN-----RGK---------QMLIGLE 58 (66)
T ss_dssp HHHHHHTTSEEEEEEC---------------CEEEEEEECSSEEEEE-EEEETTEE-----EEE---------EEEEEGG
T ss_pred HHHHHhCCcEEEEEecC-----------cceeEEEhhhcCcceEeeh-hhHHHhcc-----ccc---------eeEEEec
Confidence 45789999999997765 3344 8999999987654 22233322 333 4567788
Q ss_pred ccceeEE
Q 032347 132 SLRLVRL 138 (142)
Q Consensus 132 ~I~karl 138 (142)
+|..+.|
T Consensus 59 D~nWimL 65 (66)
T d1ycya1 59 DINWIML 65 (66)
T ss_dssp GEEEEEE
T ss_pred cceeEEe
Confidence 8876654
No 4
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.45 E-value=8.3 Score=22.74 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 47 ERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 47 eRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.+|| .-++.++|+.|.|.+++ | +.| .|.++|..-
T Consensus 5 ~~Pl---~~L~~~~~k~V~V~lk~----------g-~~~~G~L~~~D~~m 40 (74)
T d1mgqa_ 5 QRPL---DALGNSLNSPVIIKLKG----------D-REFRGVLKSFDLHM 40 (74)
T ss_dssp TCTT---HHHHHTTTSEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred cCcH---HHHHHhCCCeEEEEECC----------C-CEEEEEEEEECCCC
Confidence 4565 34567889999999987 3 444 999998774
No 5
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.85 E-value=5.4 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=22.1
Q ss_pred HhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 57 ERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 57 ~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
+.++|+.|.|.++. |...| .|.++|.--
T Consensus 2 ~~~~~~~V~V~Lk~----------~~~~~~G~L~~~D~~m 31 (68)
T d1n9ra_ 2 KGLVNHRVGVKLKF----------NSTEYRGTLVSTDNYF 31 (68)
T ss_dssp GGGTTSEEEEEESS----------TTEEEEEEEEECCTTT
T ss_pred hhHCCCEEEEEEEc----------CCEEEEEEEEEECCcC
Confidence 57899999999985 34455 899998773
No 6
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=48.07 E-value=11 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 55 ELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 55 ~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
-.+.++|+.|.|.+++ |.+.| .|.++|..-
T Consensus 9 ~L~~~~~~~V~V~lk~----------~~~~~~G~L~~~D~~m 40 (75)
T d1ljoa_ 9 MVKSMVGKIIRVEMKG----------EENQLVGKLEGVDDYM 40 (75)
T ss_dssp HHHHTTTSEEEEEETT----------CSSEEEEEEEEECTTC
T ss_pred HHHHhcCCEEEEEEEC----------CCEEEEEEEEEEcCCC
Confidence 4567999999999975 33455 999999874
No 7
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=47.46 E-value=11 Score=22.00 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.-++.++|+.|.|.+++ | +.| .|.++|..-
T Consensus 6 ~~L~~~~~~~V~V~lk~----------g-~~~~G~L~~~D~~m 37 (72)
T d1i4k1_ 6 DVLNRSLKSPVIVRLKG----------G-REFRGTLDGYDIHM 37 (72)
T ss_dssp HHHHTTTTSEEEEEEGG----------G-CEEEEEEEEECTTC
T ss_pred HHHHHhCCCEEEEEECC----------C-CEEEEEEEEEcCCC
Confidence 44678899999999988 3 344 999999874
No 8
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=46.56 E-value=10 Score=22.25 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
.-++.++|+.|.|.+++ | +.| .|.++|..-
T Consensus 5 ~~L~~~~~k~V~V~Lk~----------g-~~~~G~L~~~D~~m 36 (71)
T d1i8fa_ 5 ATLQDSIGKQVLVKLRD----------S-HEIRGILRSFDQHV 36 (71)
T ss_dssp HHHHTTTTSEEEEEEGG----------G-EEEEEEEEEECTTC
T ss_pred HHHHHhCCCEEEEEECC----------C-CEEEEEEEEECCCc
Confidence 45788999999999998 3 445 999999874
No 9
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=46.54 E-value=10 Score=21.98 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=22.5
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
++.++|+.|.|.+++ | +.| .|.++|..-
T Consensus 7 L~~~~~~~V~V~lk~----------g-~~~~G~L~~~D~~m 36 (71)
T d1h641_ 7 IHRSLDKDVLVILKK----------G-FEFRGRLIGYDIHL 36 (71)
T ss_dssp HHTTTTSEEEEEETT----------S-EEEEEEEEEECTTC
T ss_pred HHHhCCCEEEEEEcC----------C-CEEEEEEEEECCCC
Confidence 567899999999987 3 445 999999874
No 10
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}
Probab=44.02 E-value=6.1 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCC
Q 032347 6 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVER 48 (142)
Q Consensus 6 ~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieR 48 (142)
+++||++|.++++.+...+-.+- .+| -|.-|-+.+--+|
T Consensus 96 ~~~t~eec~~lA~~~a~~i~~~l---~vP-VfLYg~Aa~~~~r 134 (179)
T d1qd1a1 96 RGVTMDECVRCAQAFGQRLAEEL---GVP-VYLYGEAARTAGR 134 (179)
T ss_dssp ESCCHHHHHHHHHHHHHHHHHHH---TCC-EEEEETTCSSGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc---CCc-eEEehhhcCCccc
Confidence 46899999999999999984331 132 3555655444444
No 11
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.08 E-value=11 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=30.0
Q ss_pred CCCCChHHHHhcCCCeEEEEEeeccccCCCCCCC-CceEEEEeEeCCeeEEE
Q 032347 48 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSES-DGVFRLISFDMETECCT 98 (142)
Q Consensus 48 RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g-~k~~~L~~~~~~~~~~~ 98 (142)
||.-+..++.+|+|+.|++.-+-. .+.+ .+.+.+.+.|+..+++.
T Consensus 7 ~pRVn~~~L~~~~Gk~V~ivGkV~------~v~~~g~~~~~~s~D~~~V~v~ 52 (115)
T d2pi2e1 7 RSRINAGMLAQFIDKPVCFVGRLE------KIHPTGKMFILSDGEGKNGTIE 52 (115)
T ss_dssp CEEECGGGGGGSTTCEEEEEEEEE------EECTTSSEEEEECTTSCEEEEE
T ss_pred cceECHHHHHhhCCCeEEEEEEEE------EEcCCCCEEEEEcCCCCEEEEE
Confidence 778888999999999999876652 1222 23345555555555554
No 12
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.96 E-value=15 Score=21.37 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
++.+.|..|.|.+++ | ..+ .|.++|+.-
T Consensus 7 L~~~~g~~V~VeLkn----------g-~~~~G~L~~~D~~m 36 (72)
T d1d3ba_ 7 LHEAEGHIVTCETNT----------G-EVYRGKLIEAEDNM 36 (72)
T ss_dssp HHHTTTSEEEEEETT----------S-CEEEEEEEEECTTC
T ss_pred HHhcCCCEEEEEECC----------C-eEEEEEEEEEcCCe
Confidence 467899999999988 3 334 899999873
No 13
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=38.79 E-value=4.9 Score=24.45 Aligned_cols=36 Identities=8% Similarity=-0.109 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhh--hcCCCCCCeEEEEecCC
Q 032347 10 MEDIEAFCTTYRARLDEAE--IAKSIPENTSLEVSSPG 45 (142)
Q Consensus 10 lddc~~vSr~i~~~LD~~d--~~~~i~~~Y~LEVSSPG 45 (142)
..=++-|++++++.==+.- +.+-=-+-|.|||+||-
T Consensus 33 ~rLLelV~~WL~e~GiestihLDDkRHGVYVLevp~~~ 70 (80)
T d1b24a2 33 KALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRD 70 (80)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGG
T ss_pred hHHHHHHHHHHHHhCcceeEEeccccccEEEEecCchh
Confidence 3346678888886421110 00012367999999873
No 14
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=38.44 E-value=16 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
+-+..++|+.|.|.+++ | +.| .|.++|..-
T Consensus 10 ~~L~~~~~~~V~V~lk~----------g-~~~~G~L~~~D~~m 41 (76)
T d1th7a1 10 KVLAESLNNLVLVKLKG----------N-KEVRGMLRSYDQHM 41 (76)
T ss_dssp HHHHHHTTSEEEEEETT----------T-EEEEEEEEEECTTC
T ss_pred HHHHHhCCCEEEEEECC----------C-CEEEEEEEEECCCC
Confidence 34567899999999988 3 444 999998874
No 15
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=34.84 E-value=15 Score=22.37 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.2
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCe
Q 032347 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMET 94 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~ 94 (142)
+++++|+.|.|.+++ .+.| .|.++|..-
T Consensus 10 L~~~l~k~V~V~l~~-----------gr~~~G~L~~~D~~~ 39 (92)
T d2fwka1 10 IDKCIGNRIYVVMKG-----------DKEFSGVLRGFDEYV 39 (92)
T ss_dssp HHHTBTSBCEEEETT-----------TEEECCEEEEECTTC
T ss_pred HHHHcCCEEEEEEcC-----------CCEEEEEEEEEcCCC
Confidence 457789999999987 3455 899998774
No 16
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=30.45 E-value=8.5 Score=23.06 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=11.4
Q ss_pred CCCeEEEEecCCC
Q 032347 34 PENTSLEVSSPGV 46 (142)
Q Consensus 34 ~~~Y~LEVSSPGi 46 (142)
++.|.|+||.+|-
T Consensus 47 ~G~Y~l~is~~Gy 59 (79)
T d1vlfn1 47 NGEYTVEIDADGK 59 (79)
T ss_dssp SEEEEEEEEETTE
T ss_pred CCCEEEEEEEecc
Confidence 5889999999986
No 17
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=27.13 E-value=33 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=23.8
Q ss_pred HHHHhcCCCeEEEEEeeccccCCCCCCCCceE-EEEeEeCC
Q 032347 54 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 93 (142)
Q Consensus 54 ~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~-~L~~~~~~ 93 (142)
..+..++|+.|.|.+++ |..-. .|.++|..
T Consensus 3 ~~L~~~~gk~V~VeLkn----------g~~~~G~L~~~D~~ 33 (127)
T d1m5q1_ 3 AELNNLLGREVQVVLSN----------GEVYKGVLHAVDNQ 33 (127)
T ss_dssp HHHHTTTTSEEEEEETT----------SCEEEEEEEEECTT
T ss_pred hHHHHhCCCEEEEEECC----------CCEEEEEEEEECCC
Confidence 46889999999999988 33222 89999976
No 18
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.64 E-value=36 Score=20.11 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHhcCCCeEEEEEeeccccCCCCCCCCceE-EEEeEeCC
Q 032347 56 LERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 93 (142)
Q Consensus 56 f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~-~L~~~~~~ 93 (142)
++...|+.|.|.+++ |.... +|.++|+.
T Consensus 6 L~~~~g~~V~VeLkn----------g~~~~G~L~~~D~~ 34 (80)
T d1b34a_ 6 LMKLSHETVTIELKN----------GTQVHGTITGVDVS 34 (80)
T ss_dssp HHTCTTCEEEEEETT----------CCEEEEEEEEECTT
T ss_pred HHHcCCCEEEEEECC----------CCEEEEEEEEEcCC
Confidence 567899999999988 33222 89999886
No 19
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.44 E-value=11 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.9
Q ss_pred CCCCeEEEEecCCC
Q 032347 33 IPENTSLEVSSPGV 46 (142)
Q Consensus 33 i~~~Y~LEVSSPGi 46 (142)
.++.|.|+||.+|-
T Consensus 43 ~~g~Y~l~vs~~Gy 56 (107)
T d1uwya1 43 LPGSYIINVTVPGH 56 (107)
T ss_dssp CSEEEEEEEECSSS
T ss_pred CCccEEEEEEEEEe
Confidence 35789999999993
Done!