BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032349
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/142 (95%), Positives = 139/142 (97%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61 RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GELQETSKRAIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/131 (97%), Positives = 129/131 (98%), Gaps = 2/131 (1%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFI 118
RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV YLILDEFI
Sbjct: 61 RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFI 120
Query: 119 LAGELQETSKR 129
LAGELQETSKR
Sbjct: 121 LAGELQETSKR 131
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/143 (69%), Positives = 117/143 (81%), Gaps = 1/143 (0%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
M+ FIL+QNRQGKTRLAK+YVP D EK K++ E+HRLV RD K+ +NFVEFR HKV+Y
Sbjct: 1 MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
RRYAGLFF CVD DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE L
Sbjct: 61 RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120
Query: 120 AGELQETSKRAIIERMGELEKLE 142
AGE++ETSK+ ++ R+ L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 117/141 (82%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FIL+QNRQGKTRL+K+Y P ED EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct: 1 MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGLFFS+CVD TDNEL LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE LA
Sbjct: 61 RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120
Query: 121 GELQETSKRAIIERMGELEKL 141
GEL E SK I++RM L+ L
Sbjct: 121 GELMEPSKHVILQRMEFLDNL 141
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 116/143 (81%), Gaps = 1/143 (0%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
M+ FIL+QNRQGKTRLAK+Y P D +K K++ EVHRLV RD K+ +NFVEFR +K++Y
Sbjct: 1 MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
RRYAGLFF CVD DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE L
Sbjct: 61 RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120
Query: 120 AGELQETSKRAIIERMGELEKLE 142
AGE++ETSK+ ++ R+ L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3
SV=1
Length = 145
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 118/144 (81%), Gaps = 2/144 (1%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
++ FIL+QNRQGKTRLAK+Y P D EK K++ EVHRLV RD K+ +NFVEF R+ K++
Sbjct: 2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61
Query: 59 YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118
YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE
Sbjct: 62 YRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121
Query: 119 LAGELQETSKRAIIERMGELEKLE 142
LAGE++ETSK+ ++ R+ L+KLE
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3
SV=1
Length = 145
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 117/144 (81%), Gaps = 2/144 (1%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
++ FIL+QNRQGKTRLAK+Y P D EK K++ EVHRLV RD K+ +NFVEF R+ K++
Sbjct: 2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61
Query: 59 YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118
YRRYAGLFF CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE
Sbjct: 62 YRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121
Query: 119 LAGELQETSKRAIIERMGELEKLE 142
LAGE++ETSK+ ++ R+ L+KLE
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE++ETS+ +++++ L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE++ETS+ +++++ L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE++ETS+ +++++ L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE++ETS+ +++++ L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE LA
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE++ETS+ +++++ L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
MI+FIL+QNR GK RL+KYYVP +D EK +++ +H+L+ R+ KF NF+E+ K++Y
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
RRYAGL+F CVD TDN+LA LE IH FVEILD FF NVCELDL+FNF+KV ILDE IL
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 120 AGELQETSKRAIIERMGELEKLE 142
GE+ E++K++++ER+ LEKLE
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 103/141 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NFVE+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F +C+D DNEL LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 121 GELQETSKRAIIERMGELEKL 141
GELQE+SK+ + + ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 103/141 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NF+E+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F +C+D DNEL LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61 RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 121 GELQETSKRAIIERMGELEKL 141
GELQE+SK+ + + ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 102/138 (73%)
Query: 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYA 63
F+LL +RQGKTRL K+Y P + EK + E+ +V+NR PK NF+E++ +K+I++RYA
Sbjct: 5 FLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYA 64
Query: 64 GLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGEL 123
L+F +C D DNEL LE IH FVEILD +F NVCELDL+FNFHK Y ILDE I+AGEL
Sbjct: 65 SLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGEL 124
Query: 124 QETSKRAIIERMGELEKL 141
QETSK+ ++ + + + L
Sbjct: 125 QETSKKTVLRLISQQDTL 142
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 104/141 (73%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF+L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 122 ELQETSKRAIIERMGELEKLE 142
E+QETSK+ +++ + + + L+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQ 141
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 104/141 (73%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF+L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 122 ELQETSKRAIIERMGELEKLE 142
E+QETSK+ +++ + + + L+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQ 141
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 104/141 (73%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF+L G
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 122 ELQETSKRAIIERMGELEKLE 142
E+QETSK+ +++ + + + L+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQ 141
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 93/131 (70%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
I+F LL +RQGK RLAK++ L E+ K+ +V LV+ R PK NFVE++ K++YRR
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA LFF ++ DNEL LE IH FVE LD +F NVCELDL+FNF K Y +++E +LAG
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122
Query: 122 ELQETSKRAII 132
ELQE+SK ++
Sbjct: 123 ELQESSKTNVL 133
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 105/142 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
M+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
G++Q+TSK+++++ + + + L+
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ 142
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 105/142 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
M+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
G++Q+TSK+++++ + + + L+
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ 142
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 104/142 (73%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FILL +RQGK RL K+Y+ L D E+ K+ E+ +++++R + ++FV+++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F ++ DNEL LE +H +VE+LD +F NVCELD++FNF K Y ILDEFI+
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE+QETSK+ ++ + + + L+
Sbjct: 121 GEIQETSKKIAVKAIEDSDMLQ 142
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 104/141 (73%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+R
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++ G
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 120
Query: 122 ELQETSKRAIIERMGELEKLE 142
++Q+TSK+++++ + + + L+
Sbjct: 121 DVQDTSKKSVLKAIEQADLLQ 141
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 102/142 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FILL +RQGK RL K+Y L D E+ K+ ++ + V++R + ++F++++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
RYA L+F ++ DNEL LE +H +VE+LD +F NVCELD++FNF K Y ILDEFI+
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
GE+QETSK+ ++ + + + L+
Sbjct: 121 GEIQETSKKTAVKAIEDSDMLQ 142
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 94/142 (66%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+L NRQ K RL+K+Y +EK++ EV V++R PKF NFV++R ++Y+
Sbjct: 1 MIHFLLCFNRQSKVRLSKFYSTYTPTEKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQ 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
R+A LFF + D TDNEL LE I FV +LD F N+CELDL++ F + Y +LDEF+L
Sbjct: 61 RFASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRAYQVLDEFLLT 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
G LQE+S + I+ + + E +E
Sbjct: 121 GHLQESSSKEILRAINDAEGME 142
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 106/145 (73%), Gaps = 4/145 (2%)
Query: 2 IRFILLQNRQGKTRLAKYY-VPLEDSEKHK-VEYEVHRLVVNRDPKF-TNFVEFR-THKV 57
++FIL N+QG RL +++ V D ++ + +++RL+ +RD K +NFVEF + K+
Sbjct: 3 VQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKL 62
Query: 58 IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEF 117
IYRRYAGL+F + VD+ D+E YL IHLFVE+LD FF NVCELD+VFNF+KVY+I+DE
Sbjct: 63 IYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEM 122
Query: 118 ILAGELQETSKRAIIERMGELEKLE 142
+ GE+QE SK ++ER+ L++L+
Sbjct: 123 FIGGEIQEISKDMLLERLSILDRLD 147
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++++LL +RQGK RL K+Y + EK K+ ++ ++ R PK N +E+ HKV+Y+R
Sbjct: 4 LKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKR 63
Query: 62 YAGLFF--SLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
YA L+F + D+ DNEL LE IH FVE +D +F NVCELD++FNF KVY IL+E I+
Sbjct: 64 YASLYFIVGMTPDV-DNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIM 122
Query: 120 A-GELQETSKRAIIERMGELEKLE 142
G + E+S++ ++ + ++ +E
Sbjct: 123 CDGSIAESSRKEVLHHVTVMDTME 146
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 95/139 (68%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
IRFIL+ N+QG+TRLA+YY L E+ +E E+ R + R+ + +FVE R +K++YRR
Sbjct: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ K + +L+E ++ G
Sbjct: 63 YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
Query: 122 ELQETSKRAIIERMGELEK 140
+ ETSK I+ + ++K
Sbjct: 123 CIVETSKANILSPIQLMDK 141
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 100/142 (70%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY ++ +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV++ILDE +L
Sbjct: 61 QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
G + ET++ I+ + L+KL
Sbjct: 121 GCIVETNRARILAPLLILDKLS 142
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 100/142 (70%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY +E +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV++ILDE +L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
G + ET++ I+ + L+K+
Sbjct: 121 GCIVETNRARILAPLLILDKMS 142
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 100/141 (70%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY ++ +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV++ILDE +L
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
Query: 121 GELQETSKRAIIERMGELEKL 141
G + ET++ I+ + L+K+
Sbjct: 121 GCIVETNRARILAPLLILDKM 141
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT-----H 55
MI+ +++ N QGK RLAK+Y L ++ ++ V ++ +R +NF+E +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 56 KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 115
+++Y+ YA L+F L D ++NELA L+ I + VE LD FSNVCELD+VFN+ K++ +LD
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 116 EFILAGELQETSKRAIIERMGELEKLE 142
E + G++ ETS +++ + E+ KLE
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLE 147
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ KLE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ KLE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ KLE
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLE 148
>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1
PE=3 SV=1
Length = 139
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
I++ LL N +GKTRL++YY + E+ +E E+ R ++R +FVE++ +KVIYR+
Sbjct: 3 IKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIYRK 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
YA LFF + VD T+NELA LE IH +VEILD F NV ++FN K + ILDE + G
Sbjct: 63 YATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVSNG 118
Query: 122 ELQETSKRAIIERMGELEKLE 142
++ E SK+ I+E + L K E
Sbjct: 119 DIVEISKQHILEFVNLLYKQE 139
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ +LE
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ +LE
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ +LE
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 6/148 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV+ IL
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120
Query: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
E ++ G + ET+ I+ ++ +LE
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLE 148
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFR----THK 56
MI + + N +GK RL K+Y P+++S + K+ +++ V R P NF+E ++
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 57 VIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDE 116
+IYR+YA L+F VD ++EL L+ I +FVE LD F+NVCELDLVF F +++ IL E
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120
Query: 117 FILAGELQETSKRAII 132
+ G + ET+ I+
Sbjct: 121 VVSGGLVLETNLNEIV 136
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 89/153 (58%), Gaps = 11/153 (7%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF-------- 52
MI+ IL+ N GK RL K+Y + ++ ++ E+ LV R + NF+E
Sbjct: 1 MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFD 60
Query: 53 RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYL 112
+ K+IYR YA LFF CVD +++EL+ ++ I FVE LD F NVCELDL+F+ KV+
Sbjct: 61 KDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHY 120
Query: 113 ILDEFILAGELQETSKRAII---ERMGELEKLE 142
ILDE ++ G + ET+ I E +LEK E
Sbjct: 121 ILDEMVMGGLVLETNPTIIFSNYEIQNKLEKAE 153
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 14/154 (9%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTH---- 55
MI +L+ N++ + RL KYY P++ ++ + +V+ L+ R+ ++F+
Sbjct: 1 MIHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSS 60
Query: 56 ---------KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFN 106
++IY+ YA L+F+ VD ++ELA L+ I FVE LD F+ V ELDL+FN
Sbjct: 61 GSETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFN 120
Query: 107 FHKVYLILDEFILAGELQETSKRAIIERMGELEK 140
+ + +L+E I G + ET+ + I+E + EL +
Sbjct: 121 WQTLESVLEEIIQGGMVIETNVKKIVETVDELNR 154
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 18/158 (11%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTH---- 55
MI +L+ N++ + RL K+Y P++ ++ + +V+ L+ R+ F ++F+
Sbjct: 1 MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLS 60
Query: 56 -------------KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELD 102
++IY+ YA L+F+ VD ++ELA L+ I FVE LD F+ V ELD
Sbjct: 61 NENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELD 120
Query: 103 LVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEK 140
L+FN+ + +L+E + G + ET+ I+ + EL K
Sbjct: 121 LIFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNK 158
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF-RTHKVIYR 60
I+ + + + G+ LAKYY S K ++ +E + V N+ + + + F ++Y+
Sbjct: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKN--VFNKTSRTESEIAFFGGMTIVYK 103
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFIL 119
LF + +NEL + + E L+H NV + L+ N +L+LDE +
Sbjct: 104 NSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVD 163
Query: 120 AGELQETSKRAIIERM 135
G + E+ + +I+++
Sbjct: 164 GGVILESDPQQVIQKV 179
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNF----VEFRTHK 56
+ F +L + +G+ +AKYY D+ + + +E + V ++ K NF +
Sbjct: 8 VTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFE--KKVFDKTSK-VNFGGEITLLDNYL 64
Query: 57 VIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN--VCELDLVFNFHKVYLIL 114
V+Y+ ++ + + D NE+A L ++ F++ L + F N + + ++ + L L
Sbjct: 65 VVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTL 124
Query: 115 DEFILAGELQETSKRAIIERMG 136
DE I G + E+ I +R+G
Sbjct: 125 DEIIDGGIIMESDSAVIADRVG 146
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF-RTHKVIYR 60
I+ + + + G+ LAKYY S K ++ +E + V N+ + + + F ++Y+
Sbjct: 41 IKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKN--VFNKTSRTESEIAFLGGMTIVYK 98
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFIL 119
+F + ++NEL + + + L H NV + L+ N +L+LDE +
Sbjct: 99 SSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVD 158
Query: 120 AGELQETSKRAIIERM 135
G + E+ + +I+++
Sbjct: 159 GGVILESDPQQVIQKV 174
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE---------- 51
++ +L+ ++QG+ AKYY P S+ E H+L+ N K F +
Sbjct: 9 VQAVLILDQQGERIYAKYYQPPHRSD------EGHQLLFNSVKKQKEFEKQLYRKTHKQD 62
Query: 52 -----FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFF-SNVCELDLVF 105
F H V+Y+ Y + L + +NE+ + LD S + + ++
Sbjct: 63 SEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQE 122
Query: 106 NFHKVYLILDEFILAGELQETSKRAIIERMGE 137
N+ V L +DE I G + ET I R+ +
Sbjct: 123 NYDMVLLAIDETIDNGVILETDSNTIASRVSK 154
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE-----FRTHK 56
++ IL+ + +GK KYY S K +E + V + K + E F ++
Sbjct: 7 VKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFE--KSVFAKTQKTSARTEAEIVMFDSYF 64
Query: 57 VIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN-VCELDLVFNFHKVYLILD 115
V+Y+ L F + +NEL + F E +D+ N V + N ++L LD
Sbjct: 65 VVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLD 124
Query: 116 EFILAGELQETSKRAIIERM 135
E + G + ET +AI+E++
Sbjct: 125 EVVDGGIVLETDAKAILEKV 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.145 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,027,769
Number of Sequences: 539616
Number of extensions: 2083733
Number of successful extensions: 6382
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6298
Number of HSP's gapped (non-prelim): 73
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)