Query 032349
Match_columns 142
No_of_seqs 113 out of 838
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 21:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_S AP-2 complex subunit si 100.0 6.1E-45 2.1E-49 260.3 20.4 142 1-142 1-142 (142)
2 1w63_Q Adapter-related protein 100.0 4.5E-45 1.6E-49 265.3 19.6 140 1-140 1-140 (158)
3 3tjz_C Coatomer subunit zeta-1 100.0 6.3E-45 2.2E-49 263.3 18.0 136 1-139 12-150 (153)
4 2vgl_M AP-2 complex subunit MU 100.0 5E-35 1.7E-39 241.3 16.1 135 1-138 1-136 (435)
5 1w63_M Adaptor-related protein 100.0 3.6E-35 1.2E-39 241.4 8.1 135 1-138 2-138 (423)
6 2nut_C Vesicle-trafficking pro 96.9 0.028 9.6E-07 41.0 12.1 96 1-97 2-102 (196)
7 4b93_A Vesicle-associated memb 95.5 0.1 3.5E-06 37.8 9.0 81 11-97 11-93 (189)
8 3bw6_A Synaptobrevin homolog Y 95.4 0.39 1.3E-05 33.2 12.1 95 2-97 7-111 (144)
9 2vx8_A Nucleoporin-like protei 94.8 0.27 9.1E-06 35.2 9.2 83 11-97 53-135 (169)
10 4afi_A AP-3 complex subunit de 94.2 1.1 3.6E-05 32.1 11.4 81 11-97 63-145 (173)
11 2j3t_C Trafficking protein par 94.1 0.89 3.1E-05 31.5 10.4 92 1-94 2-108 (145)
12 3cpt_A Mitogen-activated prote 92.1 2.1 7.2E-05 29.8 11.3 92 2-93 38-135 (143)
13 3kyq_A YKT6, synaptobrevin hom 90.1 4.1 0.00014 29.6 12.4 94 2-96 4-107 (199)
14 2fh5_A Signal recognition part 88.0 3.5 0.00012 29.9 8.3 92 1-97 10-105 (185)
15 3cue_C Transport protein parti 85.4 2.9 9.8E-05 29.4 6.6 92 1-94 2-114 (159)
16 2j3w_A Sedlin, trafficking pro 79.3 12 0.00042 25.4 12.3 92 2-95 6-112 (142)
17 1nrj_A Signal recognition part 76.3 13 0.00046 25.8 7.1 73 1-73 1-93 (158)
18 3cue_A Transport protein parti 49.6 76 0.0026 23.4 13.2 22 1-22 2-23 (219)
19 1vet_B P14, late endosomal/lys 46.8 60 0.002 21.4 13.7 96 2-97 19-121 (125)
20 2wl8_A Peroxisomal biogenesis 27.6 1.3E+02 0.0044 20.1 5.1 43 82-124 66-108 (126)
21 3sbc_A Peroxiredoxin TSA1; alp 21.8 1.4E+02 0.0048 21.6 4.8 33 3-35 144-179 (216)
22 1zye_A Thioredoxin-dependent p 21.8 1.4E+02 0.0048 20.9 4.7 19 3-21 148-166 (220)
23 2j3t_D Trafficking protein par 21.7 78 0.0027 23.3 3.3 45 48-94 135-180 (219)
24 3tue_A Tryparedoxin peroxidase 21.0 1E+02 0.0035 22.4 3.8 19 3-21 148-166 (219)
No 1
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=6.1e-45 Score=260.30 Aligned_cols=142 Identities=62% Similarity=1.060 Sum_probs=136.6
Q ss_pred CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY 80 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~ 80 (142)
||+|++|+|++|+++++|||++.+.++++++++.|++.+.++++++||++.+++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 99999999999999999999998888899999999999887766789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhcC
Q 032349 81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 142 (142)
Q Consensus 81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~~ 142 (142)
+|+||+++++|++|||++||.+|++||+++|++||||+|+|+|++|++..|++++..+++++
T Consensus 81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~ 142 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142 (142)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.5e-45 Score=265.34 Aligned_cols=140 Identities=46% Similarity=0.899 Sum_probs=135.4
Q ss_pred CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY 80 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~ 80 (142)
||+|++|+|++|+++++|||++.+..+|+++++.+++.+.++++++||++.+++++++|+++++|||+++++.++||+++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 99999999999999999999999888889999999998888777789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhh
Q 032349 81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEK 140 (142)
Q Consensus 81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~ 140 (142)
+|+||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|++++++.++
T Consensus 81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999998765
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=6.3e-45 Score=263.34 Aligned_cols=136 Identities=21% Similarity=0.368 Sum_probs=125.7
Q ss_pred CeEEEEeecCCCCeeEEecCCC--CChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349 1 MIRFILLQNRQGKTRLAKYYVP--LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL 78 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel 78 (142)
||+|++|+|++|+++++|||++ .+.++|+++++++++++. +++ ||++.+++++++||++++|||+++++.++||+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SCC--CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 8999999999999999999997 466778899999999974 433 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-ccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhh
Q 032349 79 AYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELE 139 (142)
Q Consensus 79 ~~le~l~~~v~~l~~~f-~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~ 139 (142)
+++|+||+++++|+.|| |++||++|++||+++|++||||+|+|+|+|||++.|++|+++.+
T Consensus 89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 99999999999999999 89999999999999999999999999999999999999998754
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=5e-35 Score=241.28 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=122.0
Q ss_pred CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhc-CCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHH
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVN-RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA 79 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~ 79 (142)
||+|++|+|++|+++++|||++... +...+.|++.+.. +++.+||++.+++++++|+++++|||+++++.++||++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~---~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC---HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC---hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 9999999999999999999997543 3345667777654 33457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349 80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL 138 (142)
Q Consensus 80 ~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~ 138 (142)
++||||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|.+++.+.
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~ 136 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQ 136 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999988776643
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.6e-35 Score=241.38 Aligned_cols=135 Identities=13% Similarity=0.203 Sum_probs=121.8
Q ss_pred CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcC-C-CCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNR-D-PKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL 78 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel 78 (142)
||+|++|+|++|+++++|||++... +...+.|++.+.++ + .++||++.+++++++|+++++|||+++++.++||+
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~---~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l 78 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVD---MSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS 78 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCT---TTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCC---hHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 8999999999999999999997543 23456677666543 2 35699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349 79 AYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL 138 (142)
Q Consensus 79 ~~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~ 138 (142)
+++||||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|++++.+.
T Consensus 79 ~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~ 138 (423)
T 1w63_M 79 LVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999887754
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.85 E-value=0.028 Score=40.98 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=63.4
Q ss_pred CeEEEEeecCCCCeeEEecCCCCCh-----hhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLED-----SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD 75 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~ 75 (142)
||...+|.-....++|+.+++.... .+-+...+.+.+++...++..+ -+..+++.+-|..-+++.++++++.+.
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 6666666554435667777763221 1122333333434322122222 356789999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc
Q 032349 76 NELAYLECIHLFVEILDHFFSN 97 (142)
Q Consensus 76 Nel~~le~l~~~v~~l~~~f~~ 97 (142)
+.-..+.||..+.+-+..-++.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998888876553
No 7
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.51 E-value=0.1 Score=37.85 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=57.4
Q ss_pred CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCC--CCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHH
Q 032349 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPK--FTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFV 88 (142)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v 88 (142)
+|.++|+.|=.. +.. -. .+.+.+..+-+. .--.+.+|++.+-|...+++.++++++.+.+.-..+.||..+.
T Consensus 11 rg~~iLae~t~~-~gn-f~----~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~ 84 (189)
T 4b93_A 11 RGTTILAKHAWC-GGN-FL----EVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 84 (189)
T ss_dssp ETTEEEEEEESS-EEC-HH----HHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred eCCEEEEeCCCC-CCC-HH----HHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHH
Confidence 589999987332 111 11 233333322111 1124678999999999999999999999999999999999998
Q ss_pred HHHHHHhcc
Q 032349 89 EILDHFFSN 97 (142)
Q Consensus 89 ~~l~~~f~~ 97 (142)
+-+..-++.
T Consensus 85 ~eF~~~~~~ 93 (189)
T 4b93_A 85 KRFQTTYGS 93 (189)
T ss_dssp HHHHHHHGG
T ss_pred HHHHhhccc
Confidence 888876664
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.43 E-value=0.39 Score=33.21 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=63.2
Q ss_pred eEEEEeecCCC--CeeEEecCCC--CChhhH---HHHHHHHHHHHhcCCC--CCCceEEeCCeEEEEE-EeCCEEEEEEe
Q 032349 2 IRFILLQNRQG--KTRLAKYYVP--LEDSEK---HKVEYEVHRLVVNRDP--KFTNFVEFRTHKVIYR-RYAGLFFSLCV 71 (142)
Q Consensus 2 I~~i~iln~~G--~~~l~k~Y~~--~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~vy~-~~~~l~~~~~~ 71 (142)
|.++.|+-..+ .++|+..++- .+.-+| +.+...+.+.+..|.+ ..+ -+..+++.+-|. +.+++.+++++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence 45665554432 5678887762 221122 3333444445544332 223 356788888887 78999999999
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHhcc
Q 032349 72 DITDNELAYLECIHLFVEILDHFFSN 97 (142)
Q Consensus 72 ~~~~Nel~~le~l~~~v~~l~~~f~~ 97 (142)
|.+.+.-+.+.+|+.+.+-+..-++.
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCChhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999888888876653
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=94.79 E-value=0.27 Score=35.19 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=58.6
Q ss_pred CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHH
Q 032349 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEI 90 (142)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~ 90 (142)
+|.++|+.|=.... .-+...+.+.+++..++ .. .-+..+++.+-|..-+++.++++++.+..--..+.||..+.+-
T Consensus 53 RG~~VLae~t~~~g--nf~~iak~ll~kl~~~~-~r-~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~e 128 (169)
T 2vx8_A 53 RGTTILAKHAWCGG--NFLEVTEQILAKIPSEN-NK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 128 (169)
T ss_dssp ETTEEEEEEESSCB--SHHHHHHHHHTTSCSSC-EE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCC--CHHHHHHHHHhhCCCCC-Cc-eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHH
Confidence 47788887643211 12333334433332211 11 2466799999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 032349 91 LDHFFSN 97 (142)
Q Consensus 91 l~~~f~~ 97 (142)
+..-++.
T Consensus 129 F~~~y~~ 135 (169)
T 2vx8_A 129 FQTTYGS 135 (169)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 9887765
No 10
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=94.16 E-value=1.1 Score=32.13 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=59.3
Q ss_pred CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCC--CceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHH
Q 032349 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF--TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFV 88 (142)
Q Consensus 11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v 88 (142)
+|.++|+.|=.... .+ ..+.+.+..+.+.. --.+..+++.+-|..-+++.++++++.+..--..+.||..+.
T Consensus 63 rg~tiLAE~t~~~g-----nf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~ 136 (173)
T 4afi_A 63 RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 136 (173)
T ss_dssp ETTEEEEEEESSCC-----CH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence 58899998744321 11 13444444433221 124578999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 032349 89 EILDHFFSN 97 (142)
Q Consensus 89 ~~l~~~f~~ 97 (142)
+-+..-+|.
T Consensus 137 ~eF~~~yg~ 145 (173)
T 4afi_A 137 KRFQTTYGS 145 (173)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhch
Confidence 998887764
No 11
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.08 E-value=0.89 Score=31.49 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=55.6
Q ss_pred CeEEEEeecCCCCeeEEecCCCC-----C-hhhHHHHHHHHHH------HHhcCCCCC-CceEEeCCeEEE-EEEeCCEE
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPL-----E-DSEKHKVEYEVHR------LVVNRDPKF-TNFVEFRTHKVI-YRRYAGLF 66 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~-----~-~~~~~~~~~~~~~------~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~ 66 (142)
|+.++.|+|+.|..++.+-|.+. + .++.+-+..-++. ++...++.. -..+..+++++- |.--.++-
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 58899999999999999999642 1 2222222222222 222111111 123345666444 55566899
Q ss_pred EEEEecCCcCHHHHHHHHHHHH-HHHHHH
Q 032349 67 FSLCVDITDNELAYLECIHLFV-EILDHF 94 (142)
Q Consensus 67 ~~~~~~~~~Nel~~le~l~~~v-~~l~~~ 94 (142)
|+++++..++. +-++++.+. +..-+|
T Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 82 VVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 99999987665 457777777 555553
No 12
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=92.11 E-value=2.1 Score=29.77 Aligned_cols=92 Identities=9% Similarity=0.031 Sum_probs=64.1
Q ss_pred eEEEEeecCCCCeeEEecCCCCCh-hhHHHHHHHHHHHHh-----cCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349 2 IRFILLQNRQGKTRLAKYYVPLED-SEKHKVEYEVHRLVV-----NRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD 75 (142)
Q Consensus 2 I~~i~iln~~G~~~l~k~Y~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~ 75 (142)
+.+|++-|++|=+++.-..+..++ .-+..+...|....- .-.....-+..++++.+|+.....+++.++++++.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 689999999999998887765333 233455555432211 11122234556788999998999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 032349 76 NELAYLECIHLFVEILDH 93 (142)
Q Consensus 76 Nel~~le~l~~~v~~l~~ 93 (142)
|--.++++=+.+...++.
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 999998875555555543
No 13
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=90.14 E-value=4.1 Score=29.59 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=61.4
Q ss_pred eEEEEeecCCCC--eeEEecCCC--CChhhHHHHHHHH----HHHHhcCCCCC-CceEEeCCeEEE-EEEeCCEEEEEEe
Q 032349 2 IRFILLQNRQGK--TRLAKYYVP--LEDSEKHKVEYEV----HRLVVNRDPKF-TNFVEFRTHKVI-YRRYAGLFFSLCV 71 (142)
Q Consensus 2 I~~i~iln~~G~--~~l~k~Y~~--~~~~~~~~~~~~~----~~~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~~~~~~ 71 (142)
|-++.++-..|+ ++++..|+- .+-= +|.-.+++ .+.+..+.+.. ---+..+++.+- |...+++.+++++
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f-~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~it 82 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFF-QRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIA 82 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTT-THHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccce-ehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEE
Confidence 456777765443 345666652 1111 12333333 23344444321 123567888777 8999999999999
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHhc
Q 032349 72 DITDNELAYLECIHLFVEILDHFFS 96 (142)
Q Consensus 72 ~~~~Nel~~le~l~~~v~~l~~~f~ 96 (142)
+.+.+.-..+.||..+.+-+..-++
T Consensus 83 d~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 83 DSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888887776
No 14
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=88.03 E-value=3.5 Score=29.86 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=56.9
Q ss_pred CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHh-c-CCCCCCceEEeCCeEEEEEEeC--CEEEEEEecCCcC
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVV-N-RDPKFTNFVEFRTHKVIYRRYA--GLFFSLCVDITDN 76 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~vy~~~~--~l~~~~~~~~~~N 76 (142)
|+-.+.|+++.|=++-+ |.+.... .....+.+.+.+. . |.. .+.+.++++.+=|+.-+ +|.|+|+-..--+
T Consensus 10 ~~D~~~IfTkGGvVLWs--~~~~~~~-~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWC--FQGVSDS-CTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEE--EBTTTBS-CCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEe--ecCCccc-ccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEccccc
Confidence 67788999999988766 3322111 1234556655543 2 332 34577899999999988 6778888877666
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 032349 77 ELAYLECIHLFVEILDHFFSN 97 (142)
Q Consensus 77 el~~le~l~~~v~~l~~~f~~ 97 (142)
-..+-++|..+...+...|++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~ 105 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRT 105 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 666667777766666666643
No 15
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=85.36 E-value=2.9 Score=29.38 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=51.0
Q ss_pred CeEEEEeecCCCCeeEEecCCCC-----------ChhhHHH-HHHHHHHH---HhcCC--CCCCceE--EeCCeEEE-EE
Q 032349 1 MIRFILLQNRQGKTRLAKYYVPL-----------EDSEKHK-VEYEVHRL---VVNRD--PKFTNFV--EFRTHKVI-YR 60 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~~-----------~~~~~~~-~~~~~~~~---~~~~~--~~~~~i~--~~~~~~~v-y~ 60 (142)
||.++.|+|+.|..++.|-|.+. ..++... +..-++.. +.+-+ .....+. .-+.+++- |.
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e 81 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC 81 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence 48899999999999999988531 1111122 22222221 11111 1112333 23455444 44
Q ss_pred EeCCEEEEEEecCCcCHHHHHHHHHHHHH-HHHHH
Q 032349 61 RYAGLFFSLCVDITDNELAYLECIHLFVE-ILDHF 94 (142)
Q Consensus 61 ~~~~l~~~~~~~~~~Nel~~le~l~~~v~-~l~~~ 94 (142)
--.++-|++++|..++++ -++|+.+.+ +.-+|
T Consensus 82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 455899999999876654 466666665 55553
No 16
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=79.35 E-value=12 Score=25.38 Aligned_cols=92 Identities=9% Similarity=0.118 Sum_probs=53.6
Q ss_pred eEEEEeecCCCCeeEEecCCCCCh---hhHHHHHHH--HHHH------HhcCCCCCCceE---EeCCeE-EEEEEeCCEE
Q 032349 2 IRFILLQNRQGKTRLAKYYVPLED---SEKHKVEYE--VHRL------VVNRDPKFTNFV---EFRTHK-VIYRRYAGLF 66 (142)
Q Consensus 2 I~~i~iln~~G~~~l~k~Y~~~~~---~~~~~~~~~--~~~~------~~~~~~~~~~i~---~~~~~~-~vy~~~~~l~ 66 (142)
|.++.|+|++|.+++.+-|.+... .+..++... ++.. ....+ ...... ..++++ ..|..-.++-
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-~~~~l~~~~~~~~y~v~~~~T~tg~K 84 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-NNMYLKTVDKFNEWFVSAFVTAGHMR 84 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-SCSEEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-CcceeEeeecccceEEEEEEcCCCcE
Confidence 689999999999999998875321 111222222 2222 11111 111112 234443 4466666899
Q ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHHHh
Q 032349 67 FSLCVDITDNELAYLECIHLFVEILDHFF 95 (142)
Q Consensus 67 ~~~~~~~~~Nel~~le~l~~~v~~l~~~f 95 (142)
|+++++.. ++-.+-++++.+.++.-++.
T Consensus 85 fvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 85 FIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 99999863 45566777777776666554
No 17
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=76.32 E-value=13 Score=25.84 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=40.3
Q ss_pred CeEEEEeecCCCCeeEEec-C-CCCChhhHHHHHHHHHHHHhcCCCC---------CCceEEe-------CCeEEEEEE-
Q 032349 1 MIRFILLQNRQGKTRLAKY-Y-VPLEDSEKHKVEYEVHRLVVNRDPK---------FTNFVEF-------RTHKVIYRR- 61 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~-Y-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~-------~~~~~vy~~- 61 (142)
|+-.+.|+.++|++++.-. + +..++..-.++.+.+...-.++.+. --+++.+ +++++.|+-
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 8999999999999987422 1 1233322233333332211111111 1246666 777777764
Q ss_pred -eCCEEEEEEecC
Q 032349 62 -YAGLFFSLCVDI 73 (142)
Q Consensus 62 -~~~l~~~~~~~~ 73 (142)
.+.|||+++-.+
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 568998888854
No 18
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=49.62 E-value=76 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred CeEEEEeecCCCCeeEEecCCC
Q 032349 1 MIRFILLQNRQGKTRLAKYYVP 22 (142)
Q Consensus 1 MI~~i~iln~~G~~~l~k~Y~~ 22 (142)
+|.+++|+|+.|..++.|-|..
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~ 23 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTN 23 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSS
T ss_pred eeEEEEEEeCCCCEEeehhhcc
Confidence 5899999999999999999963
No 19
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=46.84 E-value=60 Score=21.42 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=62.5
Q ss_pred eEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHH---hcC----CCCCCceEEeCCeEEEEEEeCCEEEEEEecCC
Q 032349 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLV---VNR----DPKFTNFVEFRTHKVIYRRYAGLFFSLCVDIT 74 (142)
Q Consensus 2 I~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~ 74 (142)
+++.++++++|-++-+.-......+.--+....++... ... .+-..-+++.++-.++-....+.++++.++.+
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 57889999999999886654443333334555554422 111 11124467777666665556899999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHhcc
Q 032349 75 DNELAYLECIHLFVEILDHFFSN 97 (142)
Q Consensus 75 ~Nel~~le~l~~~v~~l~~~f~~ 97 (142)
.+.-.+--=++++++-|..=+..
T Consensus 99 a~lGlv~~~m~~lv~~L~~~lr~ 121 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEEPLTQ 121 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHCC---
T ss_pred CChHHHHHHHHHHHHHHhhhhhh
Confidence 99888888888888766644433
No 20
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=27.60 E-value=1.3e+02 Score=20.15 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEe
Q 032349 82 ECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQ 124 (142)
Q Consensus 82 e~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~ 124 (142)
+++..+++.+..=--+=++..-..+|..|..++.+|=+.|.|-
T Consensus 66 ~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 66 SVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 4444555554431101123344578999999999999998874
No 21
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=21.77 E-value=1.4e+02 Score=21.58 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=22.7
Q ss_pred EEEEeecCCCCeeEEecCCC---CChhhHHHHHHHH
Q 032349 3 RFILLQNRQGKTRLAKYYVP---LEDSEKHKVEYEV 35 (142)
Q Consensus 3 ~~i~iln~~G~~~l~k~Y~~---~~~~~~~~~~~~~ 35 (142)
.+.||+|++|.++..-+|.. .+.+|--+..+.+
T Consensus 144 R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 144 RGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 68999999999999888863 2334333444443
No 22
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=21.76 E-value=1.4e+02 Score=20.94 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=14.7
Q ss_pred EEEEeecCCCCeeEEecCC
Q 032349 3 RFILLQNRQGKTRLAKYYV 21 (142)
Q Consensus 3 ~~i~iln~~G~~~l~k~Y~ 21 (142)
-.++++|++|+++......
T Consensus 148 P~~~liD~~G~I~~~~~g~ 166 (220)
T 1zye_A 148 RGLFIIDPNGVIKHLSVND 166 (220)
T ss_dssp EEEEEECTTSBEEEEEEEC
T ss_pred ceEEEECCCCEEEEEEecC
Confidence 4789999999998765443
No 23
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=21.70 E-value=78 Score=23.29 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=30.8
Q ss_pred ceEEeCCeEEE-EEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHH
Q 032349 48 NFVEFRTHKVI-YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHF 94 (142)
Q Consensus 48 ~i~~~~~~~~v-y~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~ 94 (142)
..+..+.+++- |..-.++-|+++++..++. +-++++.+.++.-+|
T Consensus 135 ~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~--ir~~l~~IyelYvd~ 180 (219)
T 2j3t_D 135 EMLETDTFKLHCYQTLTGIKFVVLADPRQAG--IDSLLRKIYEIYSDF 180 (219)
T ss_dssp SEEEESSCEEEEEECTTSCEEEEEECTTCCC--HHHHHHHHHHHHHHH
T ss_pred eEEecCceEEEEEEcCCCCEEEEEecCCchH--HHHHHHHHHHHHHHH
Confidence 34556776555 5555589999999876544 457777777777666
No 24
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=20.95 E-value=1e+02 Score=22.40 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=16.9
Q ss_pred EEEEeecCCCCeeEEecCC
Q 032349 3 RFILLQNRQGKTRLAKYYV 21 (142)
Q Consensus 3 ~~i~iln~~G~~~l~k~Y~ 21 (142)
.+.||+|++|.++..-.|.
T Consensus 148 R~tFiIDp~g~Ir~~~~~~ 166 (219)
T 3tue_A 148 RGLFIIDPHGMLRQITVND 166 (219)
T ss_dssp EEEEEECTTSBEEEEEEEC
T ss_pred EEEEEECCCCeEEEEEEec
Confidence 5899999999999988775
Done!