BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032350
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N0Z|A Chain A, Solution Structure Of The First Zinc-Finger Domain From
          Znf265
          Length = 45

 Score = 35.4 bits (80), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 59 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKT 91
           V  GDW C    CG  N+A R +C RCG  KT
Sbjct: 9  RVSDGDWICPDKKCGNVNFARRTSCDRCGREKT 41



 Score = 35.4 bits (80), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 12 KKMSLPGGDWMC--AACQHQNFKKREACQRCGYPKYGGP 48
          K   +  GDW+C    C + NF +R +C RCG  K  GP
Sbjct: 6  KNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44



 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 114 GDWICNRMGCGVHNYASRMVCYKC 137
           GDWIC    CG  N+A R  C +C
Sbjct: 13  GDWICPDKKCGNVNFARRTSCDRC 36


>pdb|3G9Y|A Chain A, Crystal Structure Of The Second Zinc Finger From
          Zranb2ZNF265 BOUND To 6 Nt Ssrna Sequence Agguaa
 pdb|2K1P|A Chain A, Solution Structure Of The Second Zinc Finger Domain Of
          Zranb2ZNF265
          Length = 33

 Score = 30.8 bits (68), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 18 GGDWMCAACQHQNFKKREACQRCGYPKYG 46
            DW C  C + N+ +R  C  C  PKY 
Sbjct: 4  ANDWQCKTCSNVNWARRSECNMCNTPKYA 32


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 29.6 bits (65), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 2  SKFARVICQDKKM-SLPGGDWMCAACQHQNFKKREA 36
          S+   + C D  + ++P G W+C  CQ Q  KK EA
Sbjct: 24 SRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59


>pdb|2LK0|A Chain A, Solution Structure And Binding Studies Of The
          Ranbp2-Type Zinc Finger Of Rbm5
 pdb|2LK1|A Chain A, Solution Structure And Binding Studies Of The
          Ranbp2-Type Zinc Finger Of Rbm5
          Length = 32

 Score = 28.9 bits (63), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 20 DWMCAACQHQNFKKREACQRCGYPKY 45
          DW+C  C   NF+KR  C RCG  K+
Sbjct: 5  DWLCNKCCLNNFRKRLKCFRCGADKF 30


>pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
           Burkholderia Fungorum
          Length = 432

 Score = 26.9 bits (58), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 95  CANMMAYGTDGSVPPGWKSGDW 116
           CA  +A G D +V P + SG W
Sbjct: 339 CATPLAAGCDDAVLPAFSSGQW 360


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.494 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,153,034
Number of Sequences: 62578
Number of extensions: 205950
Number of successful extensions: 575
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 25
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)