Query 032350
Match_columns 142
No_of_seqs 173 out of 776
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj8_B Nuclear pore complex pr 99.7 1E-18 3.6E-23 119.1 2.6 75 16-92 4-91 (92)
2 3gj8_B Nuclear pore complex pr 99.7 1.5E-17 5.2E-22 113.3 2.8 79 60-142 4-90 (92)
3 3gj7_B Nuclear pore complex pr 99.3 9.7E-13 3.3E-17 90.5 2.6 75 16-92 5-98 (98)
4 1n0z_A ZNF265; zinc finger, RN 99.3 2.8E-12 9.5E-17 76.4 3.5 39 9-47 3-43 (45)
5 2k1p_A Zinc finger RAN-binding 99.3 2.5E-12 8.5E-17 71.8 2.6 31 16-46 2-32 (33)
6 2lk0_A RNA-binding protein 5; 99.2 3.1E-12 1.1E-16 70.9 2.3 30 17-46 2-31 (32)
7 3gj7_B Nuclear pore complex pr 99.2 8.2E-12 2.8E-16 85.8 2.8 74 61-142 6-97 (98)
8 2k1p_A Zinc finger RAN-binding 99.2 1.7E-11 5.7E-16 68.4 3.3 31 60-92 2-32 (33)
9 2lk0_A RNA-binding protein 5; 99.1 1.4E-11 4.9E-16 68.2 2.3 31 60-92 1-31 (32)
10 1n0z_A ZNF265; zinc finger, RN 99.1 4.3E-11 1.5E-15 71.2 3.8 36 58-93 8-43 (45)
11 3gj3_B Nuclear pore complex pr 98.6 1.6E-08 5.4E-13 56.2 2.4 31 16-46 3-33 (33)
12 3gj5_B Nuclear pore complex pr 98.6 2.3E-08 7.9E-13 55.8 2.3 31 16-46 3-33 (34)
13 2ebr_A Nuclear pore complex pr 98.4 1.6E-07 5.3E-12 56.1 3.2 36 13-48 4-39 (47)
14 3gj3_B Nuclear pore complex pr 98.4 1.5E-07 5.2E-12 52.2 2.8 29 112-142 4-32 (33)
15 3gj5_B Nuclear pore complex pr 98.3 2.7E-07 9.3E-12 51.4 2.7 30 111-142 3-32 (34)
16 2ebq_A Nuclear pore complex pr 98.3 4.6E-07 1.6E-11 54.0 3.3 34 15-48 6-39 (47)
17 2ebq_A Nuclear pore complex pr 98.2 1.3E-06 4.4E-11 52.0 4.0 31 110-142 6-36 (47)
18 2ebr_A Nuclear pore complex pr 98.2 1.7E-06 5.9E-11 51.5 4.1 36 57-94 4-39 (47)
19 2ebv_A Nuclear pore complex pr 98.1 2E-06 6.9E-11 53.2 3.2 35 12-46 23-57 (57)
20 2d9g_A YY1-associated factor 2 98.0 6.4E-06 2.2E-10 50.2 4.3 30 111-142 7-36 (53)
21 2d9g_A YY1-associated factor 2 97.9 7.4E-06 2.5E-10 49.9 3.6 33 15-47 6-38 (53)
22 2ebv_A Nuclear pore complex pr 97.7 2.6E-05 9E-10 48.1 3.2 32 109-142 25-56 (57)
23 3a9j_C Mitogen-activated prote 97.7 3.1E-05 1.1E-09 42.7 3.0 28 113-142 6-33 (34)
24 1nj3_A NPL4; NZF domain, rubre 97.6 5.4E-05 1.9E-09 40.9 3.7 28 113-142 4-31 (31)
25 3a9j_C Mitogen-activated prote 97.5 5.6E-05 1.9E-09 41.7 2.7 29 17-45 5-33 (34)
26 1nj3_A NPL4; NZF domain, rubre 97.3 0.00022 7.4E-09 38.4 3.2 27 62-90 4-30 (31)
27 2crc_A Ubiquitin conjugating e 96.9 0.00088 3E-08 40.5 3.5 28 113-142 8-35 (52)
28 2crc_A Ubiquitin conjugating e 96.8 0.001 3.4E-08 40.2 2.9 30 18-47 8-37 (52)
29 3b08_B Ranbp-type and C3HC4-ty 96.6 0.0012 4.2E-08 41.5 2.7 27 114-142 7-33 (64)
30 3b08_B Ranbp-type and C3HC4-ty 96.5 0.0018 6E-08 40.8 2.9 30 18-47 6-35 (64)
31 2c6a_A Ubiquitin-protein ligas 95.8 0.0057 1.9E-07 35.9 2.5 29 18-46 11-39 (46)
32 1w7p_D VPS36P, YLR417W; ESCRT- 94.7 0.0054 1.8E-07 53.2 0.0 77 61-141 114-204 (566)
33 2c6a_A Ubiquitin-protein ligas 94.4 0.03 1E-06 32.8 2.7 28 63-92 12-39 (46)
34 1w7p_D VPS36P, YLR417W; ESCRT- 93.8 0.011 3.7E-07 51.3 0.0 73 18-92 115-206 (566)
35 2cr8_A MDM4 protein; ZF-ranbp 89.8 0.31 1E-05 29.1 3.1 30 17-46 8-37 (53)
36 1dx8_A Rubredoxin; electron tr 86.5 1.2 4.1E-05 28.1 4.5 41 17-68 4-44 (70)
37 2kn9_A Rubredoxin; metalloprot 84.3 1.5 5E-05 28.5 4.2 44 18-74 25-68 (81)
38 1e8j_A Rubredoxin; iron-sulfur 83.9 2 6.9E-05 25.4 4.4 16 57-74 29-44 (52)
39 2cr8_A MDM4 protein; ZF-ranbp 82.5 1.5 5.3E-05 26.0 3.4 31 60-92 7-37 (53)
40 1yk4_A Rubredoxin, RD; electro 81.5 1.9 6.6E-05 25.5 3.7 16 57-74 28-43 (52)
41 2v3b_B Rubredoxin 2, rubredoxi 78.3 2.1 7.1E-05 25.6 3.1 16 57-74 29-44 (55)
42 2ayj_A 50S ribosomal protein L 78.3 1 3.4E-05 27.3 1.7 26 18-43 17-42 (56)
43 4rxn_A Rubredoxin; electron tr 75.1 2.4 8.3E-05 25.3 2.7 16 57-74 29-44 (54)
44 1s24_A Rubredoxin 2; electron 74.2 3.1 0.00011 27.3 3.3 43 19-74 34-76 (87)
45 3j21_g 50S ribosomal protein L 71.4 2 6.7E-05 25.5 1.7 25 19-43 13-37 (51)
46 2ysm_A Myeloid/lymphoid or mix 69.0 4 0.00014 27.2 3.1 21 16-44 44-64 (111)
47 3v43_A Histone acetyltransfera 67.5 5.9 0.0002 26.5 3.7 21 59-89 50-70 (112)
48 2j9u_B VPS36, vacuolar protein 66.7 2.7 9.1E-05 26.9 1.7 19 18-36 15-33 (76)
49 2ayj_A 50S ribosomal protein L 65.9 3.4 0.00012 24.9 2.0 26 62-89 17-42 (56)
50 3j21_g 50S ribosomal protein L 64.7 4.2 0.00014 24.0 2.2 25 63-89 13-37 (51)
51 3pwf_A Rubrerythrin; non heme 63.0 5.4 0.00018 29.0 3.0 29 17-45 135-164 (170)
52 4b2u_A S67; toxin, ICK; NMR {S 62.4 1.9 6.5E-05 23.0 0.3 13 58-72 12-24 (36)
53 2kwj_A Zinc finger protein DPF 59.6 3.7 0.00013 27.7 1.5 20 17-44 49-68 (114)
54 3pwf_A Rubrerythrin; non heme 56.4 5.4 0.00018 29.0 2.0 29 62-92 136-165 (170)
55 1dl6_A Transcription factor II 53.6 8.9 0.0003 22.9 2.3 34 30-76 7-40 (58)
56 3shb_A E3 ubiquitin-protein li 52.3 22 0.00076 22.3 4.2 21 60-91 17-37 (77)
57 1lko_A Rubrerythrin all-iron(I 51.3 6.4 0.00022 28.9 1.7 26 20-45 155-182 (191)
58 3asl_A E3 ubiquitin-protein li 48.6 21 0.00073 21.8 3.6 10 62-73 57-67 (70)
59 1yuz_A Nigerythrin; rubrythrin 47.7 8.6 0.00029 28.6 1.9 27 63-91 170-197 (202)
60 2l5u_A Chromodomain-helicase-D 46.0 11 0.00037 22.5 1.9 15 16-30 45-59 (61)
61 1f62_A Transcription factor WS 45.0 10 0.00036 21.4 1.6 13 16-28 37-49 (51)
62 1lko_A Rubrerythrin all-iron(I 44.4 8.8 0.0003 28.1 1.5 27 64-92 155-183 (191)
63 1yuz_A Nigerythrin; rubrythrin 40.5 18 0.0006 26.8 2.7 27 18-44 169-196 (202)
64 1fp0_A KAP-1 corepressor; PHD 40.2 18 0.0006 23.6 2.3 15 15-29 58-72 (88)
65 6rxn_A Rubredoxin; electron tr 39.8 14 0.00047 21.2 1.5 15 58-74 24-38 (46)
66 2kdx_A HYPA, hydrogenase/ureas 36.4 20 0.00069 24.0 2.3 29 17-45 70-101 (119)
67 2lri_C Autoimmune regulator; Z 36.1 18 0.00061 22.0 1.8 14 15-28 45-58 (66)
68 1wil_A KIAA1045 protein; ring 35.2 87 0.003 20.4 5.0 60 18-79 13-80 (89)
69 1mm2_A MI2-beta; PHD, zinc fin 34.6 19 0.00064 21.4 1.7 14 16-29 43-56 (61)
70 2yt5_A Metal-response element- 34.6 6 0.00021 23.7 -0.7 17 17-33 49-65 (66)
71 3a43_A HYPD, hydrogenase nicke 32.7 23 0.00077 24.7 2.0 14 18-31 68-81 (139)
72 1pft_A TFIIB, PFTFIIBN; N-term 31.2 30 0.001 19.4 2.1 11 113-125 22-32 (50)
73 1wen_A Inhibitor of growth fam 31.0 21 0.00072 22.0 1.5 14 18-31 54-67 (71)
74 3ask_A E3 ubiquitin-protein li 30.6 29 0.001 26.4 2.5 11 61-73 212-223 (226)
75 1xwh_A Autoimmune regulator; P 30.5 13 0.00044 22.4 0.4 15 16-30 42-56 (66)
76 2yql_A PHD finger protein 21A; 29.8 13 0.00044 21.6 0.3 13 16-28 43-55 (56)
77 2k4x_A 30S ribosomal protein S 28.7 19 0.00063 21.3 0.9 12 20-31 18-29 (55)
78 3k7a_M Transcription initiatio 25.1 57 0.0019 25.8 3.4 36 30-76 17-52 (345)
79 4b2v_A S64; toxin, ICK; NMR {S 24.8 28 0.00095 17.9 1.0 13 58-72 12-24 (32)
80 2puy_A PHD finger protein 21A; 24.3 20 0.00068 21.0 0.4 15 16-30 39-53 (60)
81 2e6s_A E3 ubiquitin-protein li 24.1 36 0.0012 21.3 1.7 12 16-27 63-75 (77)
82 3j20_Y 30S ribosomal protein S 23.6 29 0.00099 20.0 1.0 13 63-77 36-48 (50)
83 3irb_A Uncharacterized protein 23.3 29 0.001 24.2 1.3 23 22-44 49-71 (145)
84 2gmg_A Hypothetical protein PF 22.7 65 0.0022 21.6 2.8 29 61-92 64-96 (105)
85 2gnr_A Conserved hypothetical 22.3 32 0.0011 24.1 1.3 20 22-41 49-68 (145)
86 1weu_A Inhibitor of growth fam 22.1 38 0.0013 22.0 1.5 13 18-30 74-86 (91)
87 2ku3_A Bromodomain-containing 21.6 17 0.00059 22.4 -0.3 13 16-28 53-65 (71)
88 2e6r_A Jumonji/ARID domain-con 21.3 24 0.00082 22.8 0.4 15 15-29 52-66 (92)
89 3irb_A Uncharacterized protein 20.5 41 0.0014 23.4 1.5 24 66-91 49-72 (145)
90 2lbz_A Thuricin17, thurincin H 20.4 25 0.00086 18.0 0.3 8 20-27 1-8 (31)
No 1
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.72 E-value=1e-18 Score=119.11 Aligned_cols=75 Identities=27% Similarity=0.523 Sum_probs=26.6
Q ss_pred CCCCCeeccccCccccccccccccCCCCCCCCCCCcc-------------cccccccccCCCcccCCCCCCCeecCCCcC
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVST-------------YLCNRTEVLAGDWYCTAMNCGAHNYASRPN 82 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~-------------~~~~~~~~~~gdW~C~~~~C~~~N~~~r~~ 82 (142)
.++|||+|+.|+++||+++++|++|++|||.+..... .++..+..++|+|.|+ .|+++|++++..
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~~~ 81 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADSTK 81 (92)
T ss_dssp ------------------------------------------------------------CCEECT--TTCCEECSSCSB
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhccc
Confidence 3689999999999999999999999999986431100 0012355688999999 999999999999
Q ss_pred ccccCCCCCC
Q 032350 83 CYRCGAAKTD 92 (142)
Q Consensus 83 C~~C~~~~~~ 92 (142)
|+.|+++||.
T Consensus 82 C~~C~~pkp~ 91 (92)
T 3gj8_B 82 CIACESAKPG 91 (92)
T ss_dssp CTTTCCBCC-
T ss_pred ccccCCCCCC
Confidence 9999999984
No 2
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.67 E-value=1.5e-17 Score=113.33 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=26.2
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCCccccccccc-----CC---CCCCCCCCCCCCeeecCCCCCceeccCC
Q 032350 60 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAY-----GT---DGSVPPGWKSGDWICNRMGCGVHNYASR 131 (142)
Q Consensus 60 ~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~~~~~~~~g~-----g~---~~~~~~~~~~gdW~C~~~~C~~~N~a~r 131 (142)
.++|||.|. .|+++||+++..|..|+++||........+. .. .+......++|+|+|. .|+++|++.+
T Consensus 4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~ 79 (92)
T 3gj8_B 4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADS 79 (92)
T ss_dssp --------------------------------------------------------------CCEECT--TTCCEECSSC
T ss_pred CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhc
Confidence 468999999 9999999999999999999987533211110 00 0001223478999999 7999999999
Q ss_pred ccccCCCCCCC
Q 032350 132 MVCYKCKTPRE 142 (142)
Q Consensus 132 ~~C~~C~~~k~ 142 (142)
.+|++|+++||
T Consensus 80 ~~C~~C~~pkp 90 (92)
T 3gj8_B 80 TKCIACESAKP 90 (92)
T ss_dssp SBCTTTCCBCC
T ss_pred ccccccCCCCC
Confidence 99999999986
No 3
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.28 E-value=9.7e-13 Score=90.46 Aligned_cols=75 Identities=23% Similarity=0.508 Sum_probs=26.5
Q ss_pred CCCCCeeccccCccccccccccccCCCCCCCCCCCc------------------cccc-ccccccCCCcccCCCCCCCee
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVS------------------TYLC-NRTEVLAGDWYCTAMNCGAHN 76 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~------------------~~~~-~~~~~~~gdW~C~~~~C~~~N 76 (142)
.....|.|..|.+.|.+...+|..|++||+...... ..++ ..+...+|.|.|. .|.++|
T Consensus 5 ~~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~N 82 (98)
T 3gj7_B 5 SAGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQN 82 (98)
T ss_dssp ------------------------------------------------------------------CCEECT--TTCCEE
T ss_pred CCCCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCCC
Confidence 346789999999999999999999999998532100 0011 2356678999999 999999
Q ss_pred cCCCcCccccCCCCCC
Q 032350 77 YASRPNCYRCGAAKTD 92 (142)
Q Consensus 77 ~~~r~~C~~C~~~~~~ 92 (142)
.+....|..|+++||.
T Consensus 83 ~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 83 KPEAVKCVACETPKPG 98 (98)
T ss_dssp CTTCSBCTTTCCBCC-
T ss_pred hhhcceecccCCCCCC
Confidence 9999999999999973
No 4
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.26 E-value=2.8e-12 Score=76.36 Aligned_cols=39 Identities=38% Similarity=0.983 Sum_probs=35.2
Q ss_pred hcCCCCCCCCCCeecc--ccCccccccccccccCCCCCCCC
Q 032350 9 CQDKKMSLPGGDWMCA--ACQHQNFKKREACQRCGYPKYGG 47 (142)
Q Consensus 9 ~~~~~~~~~~gdW~C~--~C~~~Nf~~r~~C~~C~~prp~~ 47 (142)
.+.+.+..++|||+|+ .|+++||++|..|++|++||+.+
T Consensus 3 m~~~~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 3 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCCSSCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cccccCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 3457778899999999 89999999999999999999875
No 5
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.25 E-value=2.5e-12 Score=71.79 Aligned_cols=31 Identities=35% Similarity=1.014 Sum_probs=29.2
Q ss_pred CCCCCeeccccCccccccccccccCCCCCCC
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
+++|||+|+.|+++||++|..|++|++||+.
T Consensus 2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccCCCCCccccccccccccCCcCCC
Confidence 3789999999999999999999999999975
No 6
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.23 E-value=3.1e-12 Score=70.93 Aligned_cols=30 Identities=43% Similarity=0.990 Sum_probs=28.6
Q ss_pred CCCCeeccccCccccccccccccCCCCCCC
Q 032350 17 PGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
++|||.|+.|+++||++|..|++|++||+.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 679999999999999999999999999975
No 7
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.18 E-value=8.2e-12 Score=85.80 Aligned_cols=74 Identities=27% Similarity=0.580 Sum_probs=26.2
Q ss_pred cCCCcccCCCCCCCeecCCCcCccccCCCCCCccccc------------------ccccCCCCCCCCCCCCCCeeecCCC
Q 032350 61 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACAN------------------MMAYGTDGSVPPGWKSGDWICNRMG 122 (142)
Q Consensus 61 ~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~~~~~~------------------~~g~g~~~~~~~~~~~gdW~C~~~~ 122 (142)
....|.|. .|.++|.+....|..|+++|+...... ..||| .....+.|.|+|. +
T Consensus 6 ~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg----d~fk~~~g~W~C~--~ 77 (98)
T 3gj7_B 6 AGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG----DKFKPAIGTWDCD--T 77 (98)
T ss_dssp -----------------------------------------------------------------------CCEECT--T
T ss_pred CCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh----hccCCCCCcccCC--c
Confidence 35689999 999999999999999999998542110 01122 1223467999999 7
Q ss_pred CCceeccCCccccCCCCCCC
Q 032350 123 CGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 123 C~~~N~a~r~~C~~C~~~k~ 142 (142)
|+++|.+...+|.+|++|||
T Consensus 78 C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 78 CLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp TCCEECTTCSBCTTTCCBCC
T ss_pred CcCCChhhcceecccCCCCC
Confidence 99999999999999999997
No 8
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.17 E-value=1.7e-11 Score=68.38 Aligned_cols=31 Identities=35% Similarity=0.827 Sum_probs=29.0
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 032350 60 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 92 (142)
Q Consensus 60 ~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~ 92 (142)
+++|||+|+ .|+++||++|..|++|++||+.
T Consensus 2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence 578999999 9999999999999999999874
No 9
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.15 E-value=1.4e-11 Score=68.21 Aligned_cols=31 Identities=42% Similarity=1.021 Sum_probs=28.4
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 032350 60 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 92 (142)
Q Consensus 60 ~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~ 92 (142)
++.|||+|+ .|+++||++|..|++|++|+++
T Consensus 1 pk~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 1 XKFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp -CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 367999999 9999999999999999999975
No 10
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.12 E-value=4.3e-11 Score=71.16 Aligned_cols=36 Identities=44% Similarity=0.924 Sum_probs=32.8
Q ss_pred ccccCCCcccCCCCCCCeecCCCcCccccCCCCCCc
Q 032350 58 TEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDY 93 (142)
Q Consensus 58 ~~~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~~ 93 (142)
...++|||+|++..|+++||++|..|++|+++|+..
T Consensus 8 ~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 8 FRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp CSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 567899999998889999999999999999999864
No 11
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.62 E-value=1.6e-08 Score=56.16 Aligned_cols=31 Identities=39% Similarity=0.792 Sum_probs=26.7
Q ss_pred CCCCCeeccccCccccccccccccCCCCCCC
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
+.+|+|.|+.|.++|.+...+|..|++|||+
T Consensus 3 ~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 3 LGSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 4689999999999999999999999999984
No 12
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.57 E-value=2.3e-08 Score=55.82 Aligned_cols=31 Identities=35% Similarity=0.731 Sum_probs=25.8
Q ss_pred CCCCCeeccccCccccccccccccCCCCCCC
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
+++|+|+|..|.+.|.+...+|..|++|||+
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 3689999999999999999999999999986
No 13
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.6e-07 Score=56.11 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=32.7
Q ss_pred CCCCCCCCeeccccCccccccccccccCCCCCCCCC
Q 032350 13 KMSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGP 48 (142)
Q Consensus 13 ~~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~ 48 (142)
++..+.|.|.|..|.+.|.+.+.+|..|++|||+..
T Consensus 4 ~fk~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 4 GSSGPEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCSSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred cccCCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 456678999999999999999999999999999863
No 14
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.41 E-value=1.5e-07 Score=52.15 Aligned_cols=29 Identities=38% Similarity=0.906 Sum_probs=26.1
Q ss_pred CCCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 112 KSGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 112 ~~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
.+|.|+|+ +|+++|.+...+|.+|.+|||
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCCCCC
Confidence 47899999 799999999999999999997
No 15
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.33 E-value=2.7e-07 Score=51.44 Aligned_cols=30 Identities=33% Similarity=0.754 Sum_probs=25.4
Q ss_pred CCCCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 111 WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 111 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
.++|.|+|+ +|.+.|.+...+|.+|+++||
T Consensus 3 ~~~G~W~C~--~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 3 LGSGSWDCE--VCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp ---CCEECT--TTCCEECSSCSBCTTTCCBC-
T ss_pred CCCCceECC--eeEeECccccCEEcccCCcCC
Confidence 357999999 899999999999999999986
No 16
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=4.6e-07 Score=53.99 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=31.1
Q ss_pred CCCCCCeeccccCccccccccccccCCCCCCCCC
Q 032350 15 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGGP 48 (142)
Q Consensus 15 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~ 48 (142)
+.++|.|.|..|.+.|.+.+.+|+.|++||++..
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 4568999999999999999999999999999864
No 17
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=52.04 Aligned_cols=31 Identities=32% Similarity=0.770 Sum_probs=28.5
Q ss_pred CCCCCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 110 GWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 110 ~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
..++|.|.|. +|.+.|.+...+|++|++||+
T Consensus 6 ~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKp 36 (47)
T 2ebq_A 6 SGVIGTWDCD--TCLVQNKPEAIKCVACETPKP 36 (47)
T ss_dssp CCCSSSEECS--SSCCEECSSCSBCSSSCCBCS
T ss_pred CCCCCceECC--eeeccCccCCceecCcCCCCC
Confidence 4568999999 899999999999999999986
No 18
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.7e-06 Score=51.54 Aligned_cols=36 Identities=28% Similarity=0.574 Sum_probs=32.8
Q ss_pred cccccCCCcccCCCCCCCeecCCCcCccccCCCCCCcc
Q 032350 57 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYA 94 (142)
Q Consensus 57 ~~~~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~~~ 94 (142)
++...+|.|.|. .|.+.|.+.+..|..|++|+|...
T Consensus 4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence 466788999999 999999999999999999999764
No 19
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2e-06 Score=53.20 Aligned_cols=35 Identities=31% Similarity=0.661 Sum_probs=31.5
Q ss_pred CCCCCCCCCeeccccCccccccccccccCCCCCCC
Q 032350 12 KKMSLPGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 12 ~~~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
..+..+.|.|.|..|.+.|.+...+|..|++|||+
T Consensus 23 ~~FK~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 23 DKFKRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp SCCCCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred HhcCCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 34566789999999999999999999999999984
No 20
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=6.4e-06 Score=50.24 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=27.1
Q ss_pred CCCCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 111 WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 111 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
...+.|.|+ .|+|+|.+....|.||.+||+
T Consensus 7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp SCCCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred CCCCCcCCC--CCccCCCCCCCccCCCCCcCC
Confidence 346789999 799999999999999999985
No 21
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=7.4e-06 Score=49.95 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=29.7
Q ss_pred CCCCCCeeccccCccccccccccccCCCCCCCC
Q 032350 15 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG 47 (142)
Q Consensus 15 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 47 (142)
...++.|.|+.|++.|......|.+|.+||+..
T Consensus 6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SSCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 345789999999999999999999999999864
No 22
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=2.6e-05 Score=48.15 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=29.4
Q ss_pred CCCCCCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 109 PGWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 109 ~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
...++|.|.|. +|.+.|-+...+|+.|++|||
T Consensus 25 FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 25 FKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred cCCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 45678999999 899999999999999999986
No 23
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.67 E-value=3.1e-05 Score=42.73 Aligned_cols=28 Identities=29% Similarity=0.841 Sum_probs=25.6
Q ss_pred CCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 113 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 113 ~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
...|.|+ .|+|.|.+....|.+|..+|+
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 4579999 799999999999999999885
No 24
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.65 E-value=5.4e-05 Score=40.89 Aligned_cols=28 Identities=32% Similarity=0.715 Sum_probs=25.4
Q ss_pred CCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 113 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 113 ~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
...|.|+ .|+|+|.+....|++|.+++.
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r~ 31 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPRT 31 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCCC
Confidence 3579999 799999999999999999874
No 25
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.53 E-value=5.6e-05 Score=41.68 Aligned_cols=29 Identities=31% Similarity=0.832 Sum_probs=26.7
Q ss_pred CCCCeeccccCccccccccccccCCCCCC
Q 032350 17 PGGDWMCAACQHQNFKKREACQRCGYPKY 45 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp 45 (142)
....|.|+.|++.|......|.+|.++|+
T Consensus 5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 5 MGAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 35689999999999999999999999986
No 26
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.30 E-value=0.00022 Score=38.45 Aligned_cols=27 Identities=22% Similarity=0.656 Sum_probs=25.0
Q ss_pred CCCcccCCCCCCCeecCCCcCccccCCCC
Q 032350 62 AGDWYCTAMNCGAHNYASRPNCYRCGAAK 90 (142)
Q Consensus 62 ~gdW~C~~~~C~~~N~~~r~~C~~C~~~~ 90 (142)
...|.|+ .|+++|......|.+|+.++
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCC
Confidence 3589999 99999999999999999886
No 27
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=96.91 E-value=0.00088 Score=40.49 Aligned_cols=28 Identities=32% Similarity=0.689 Sum_probs=25.4
Q ss_pred CCCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 113 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 113 ~gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
...|.|+ .|+|.|......|.||..+++
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp 35 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARP 35 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCC
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCC
Confidence 3479999 799999999999999999875
No 28
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=96.76 E-value=0.001 Score=40.24 Aligned_cols=30 Identities=23% Similarity=0.597 Sum_probs=27.8
Q ss_pred CCCeeccccCccccccccccccCCCCCCCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYPKYGG 47 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 47 (142)
+..|.|+.|++.|......|-+|.++|+..
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 458999999999999999999999999875
No 29
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.60 E-value=0.0012 Score=41.49 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=24.9
Q ss_pred CCeeecCCCCCceeccCCccccCCCCCCC
Q 032350 114 GDWICNRMGCGVHNYASRMVCYKCKTPRE 142 (142)
Q Consensus 114 gdW~C~~~~C~~~N~a~r~~C~~C~~~k~ 142 (142)
..|.|+ .|+|+|.+....|.+|.++++
T Consensus 7 ~~W~CP--~CTf~N~p~~p~CEmC~~prp 33 (64)
T 3b08_B 7 VGWQCP--GCTFINKPTRPGCEMCCRARP 33 (64)
T ss_dssp CSEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcCC--CccccCCCCCCccCcCCCCCC
Confidence 479999 799999999999999999875
No 30
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.50 E-value=0.0018 Score=40.77 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=27.8
Q ss_pred CCCeeccccCccccccccccccCCCCCCCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYPKYGG 47 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 47 (142)
...|.|+.|++.|......|-+|.++|+..
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 458999999999999999999999999875
No 31
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=95.81 E-value=0.0057 Score=35.85 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=26.5
Q ss_pred CCCeeccccCccccccccccccCCCCCCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
.+.|.|..|...|.+....|++|-+-|..
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred cceEecccccccCCCccchhhHHHhhccc
Confidence 47899999999999999999999998853
No 32
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=94.72 E-value=0.0054 Score=53.22 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred cCCCcccCCCCCCCeecCC---------CcCccccCCCCCCccccc----ccccCCC-CCCCCCCCCCCeeecCCCCCce
Q 032350 61 LAGDWYCTAMNCGAHNYAS---------RPNCYRCGAAKTDYACAN----MMAYGTD-GSVPPGWKSGDWICNRMGCGVH 126 (142)
Q Consensus 61 ~~gdW~C~~~~C~~~N~~~---------r~~C~~C~~~~~~~~~~~----~~g~g~~-~~~~~~~~~gdW~C~~~~C~~~ 126 (142)
....|+|+ -|++.|-.. .-.|..||-+.+...... +.-.... ....+.....+-.|+ .|+|.
T Consensus 114 ~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~ 189 (566)
T 1w7p_D 114 VVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFA 189 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--ccccc
Confidence 35689999 999999863 345888987765332110 0000000 000001122457799 69999
Q ss_pred eccCCccccCCCCCC
Q 032350 127 NYASRMVCYKCKTPR 141 (142)
Q Consensus 127 N~a~r~~C~~C~~~k 141 (142)
|.++-..|++|+++.
T Consensus 190 NHPsl~~CEiCg~~L 204 (566)
T 1w7p_D 190 NHPQIGNCEICGHRL 204 (566)
T ss_dssp ---------------
T ss_pred CChhhhcccccCCcC
Confidence 999999999999875
No 33
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=94.40 E-value=0.03 Score=32.77 Aligned_cols=28 Identities=32% Similarity=0.748 Sum_probs=25.7
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCCCCC
Q 032350 63 GDWYCTAMNCGAHNYASRPNCYRCGAAKTD 92 (142)
Q Consensus 63 gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~ 92 (142)
+.|.|. .|..+|.+....|.+|-+-|..
T Consensus 12 D~WkC~--~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 12 DYWKCT--SCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GCEECT--TTCCEECSSCSSCTTTCCCCSS
T ss_pred ceEecc--cccccCCCccchhhHHHhhccc
Confidence 789999 9999999999999999988753
No 34
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=93.81 E-value=0.011 Score=51.30 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCeeccccCcccccc---------ccccccCCCCCCCCCCCc-----ccc-----cccccccCCCcccCCCCCCCeecC
Q 032350 18 GGDWMCAACQHQNFKK---------REACQRCGYPKYGGPDVS-----TYL-----CNRTEVLAGDWYCTAMNCGAHNYA 78 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~---------r~~C~~C~~prp~~~~~~-----~~~-----~~~~~~~~gdW~C~~~~C~~~N~~ 78 (142)
...|.|+-|.+.|... .-.|..|+.+.+...... +.. .........+=.|+ .|+|+|-+
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~NHP 192 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFANHP 192 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccCCh
Confidence 4689999999999863 346999999876432110 000 00111122356799 99999999
Q ss_pred CCcCccccCCCCCC
Q 032350 79 SRPNCYRCGAAKTD 92 (142)
Q Consensus 79 ~r~~C~~C~~~~~~ 92 (142)
+-..|..||++-+.
T Consensus 193 sl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 193 QIGNCEICGHRLPN 206 (566)
T ss_dssp --------------
T ss_pred hhhcccccCCcCCC
Confidence 99999999998765
No 35
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=89.84 E-value=0.31 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.638 Sum_probs=26.8
Q ss_pred CCCCeeccccCccccccccccccCCCCCCC
Q 032350 17 PGGDWMCAACQHQNFKKREACQRCGYPKYG 46 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 46 (142)
.+.-|.|..|...|-+-...|.+|-+-|.+
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcc
Confidence 456799999999999999999999998864
No 36
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=86.47 E-value=1.2 Score=28.05 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCCeeccccCccccccccccccCCCCCCCCCCCcccccccccccCCCcccC
Q 032350 17 PGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCT 68 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~ 68 (142)
.-..|.|..|+++=.... +-|+.. ..++ ..+...+.||.|+
T Consensus 4 ~m~~y~C~vCGyiYd~~~------Gdp~~g-i~pG----T~f~~lPddw~CP 44 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEK------GDKFAG-IPPG----TPFVDLSDSFMCP 44 (70)
T ss_dssp CSSCEEETTTCCEECTTT------CCTTTT-CCSS----CCGGGSCTTCBCT
T ss_pred CCceEEeCCCCEEEcCCC------CCcccC-cCCC----CchhhCCCCCcCC
Confidence 345799999987732211 111111 0111 2456678899999
No 37
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=84.30 E-value=1.5 Score=28.51 Aligned_cols=44 Identities=27% Similarity=0.644 Sum_probs=24.2
Q ss_pred CCCeeccccCccccccccccccCCCCCCCCCCCcccccccccccCCCcccCCCCCCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 74 (142)
...|.|..|+++-.... +-|..+ ..++ ..+...+.||.|+ .|+.
T Consensus 25 m~~y~C~vCGyvYD~~~------Gdp~~g-I~pG----T~fedlPddW~CP--vCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEAL------GWPEDG-IAAG----TRWDDIPDDWSCP--DCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTT------CBTTTT-BCTT----CCTTTSCTTCCCT--TTCC
T ss_pred cceEEeCCCCEEEcCCc------CCcccC-cCCC----CChhHCCCCCcCC--CCCC
Confidence 35799999998733211 111111 0111 2456678899999 5543
No 38
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=83.87 E-value=2 Score=25.36 Aligned_cols=16 Identities=50% Similarity=1.086 Sum_probs=11.9
Q ss_pred cccccCCCcccCCCCCCC
Q 032350 57 RTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 57 ~~~~~~gdW~C~~~~C~~ 74 (142)
.+...+.||.|+ .|+.
T Consensus 29 ~f~~lP~dw~CP--~Cg~ 44 (52)
T 1e8j_A 29 KFEDLPDDWACP--VCGA 44 (52)
T ss_dssp CTTSSCTTCCCS--SSCC
T ss_pred chHHCCCCCcCC--CCCC
Confidence 466678899999 6654
No 39
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=82.51 E-value=1.5 Score=26.01 Aligned_cols=31 Identities=35% Similarity=0.828 Sum_probs=26.8
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 032350 60 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 92 (142)
Q Consensus 60 ~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~~ 92 (142)
..++-|.|. .|.-.|-+....|.+|-+-|..
T Consensus 7 ~~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 7 GSEDEWQCT--ECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CCSCCEECS--SSCCEECSSCCBCTTTCCBCCC
T ss_pred CCcceeecc--cccccCCCccchhHHHHHhhcc
Confidence 345679999 9999999999999999888753
No 40
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=81.49 E-value=1.9 Score=25.45 Aligned_cols=16 Identities=50% Similarity=1.093 Sum_probs=12.1
Q ss_pred cccccCCCcccCCCCCCC
Q 032350 57 RTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 57 ~~~~~~gdW~C~~~~C~~ 74 (142)
.+...+.||.|+ .|+.
T Consensus 28 ~f~~lP~dw~CP--~Cg~ 43 (52)
T 1yk4_A 28 KFEDLPDDWVCP--LCGA 43 (52)
T ss_dssp CGGGSCTTCBCT--TTCC
T ss_pred CHhHCCCCCcCC--CCCC
Confidence 466678899999 6664
No 41
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=78.31 E-value=2.1 Score=25.60 Aligned_cols=16 Identities=44% Similarity=1.151 Sum_probs=11.8
Q ss_pred cccccCCCcccCCCCCCC
Q 032350 57 RTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 57 ~~~~~~gdW~C~~~~C~~ 74 (142)
.+...+.||.|+ .|+.
T Consensus 29 ~f~~lP~dw~CP--~Cga 44 (55)
T 2v3b_B 29 RWEDIPADWVCP--DCGV 44 (55)
T ss_dssp CGGGSCTTCCCT--TTCC
T ss_pred ChhHCCCCCcCC--CCCC
Confidence 466678899999 5554
No 42
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=78.31 E-value=1 Score=27.31 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCeeccccCccccccccccccCCCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYP 43 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~p 43 (142)
-..++|-.|+..|-...+.|.+|+..
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hchhhhccccCcCCcccccccCCCCC
Confidence 46799999999999999999999864
No 43
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=75.06 E-value=2.4 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=12.2
Q ss_pred cccccCCCcccCCCCCCC
Q 032350 57 RTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 57 ~~~~~~gdW~C~~~~C~~ 74 (142)
.+...+.||.|+ .|+.
T Consensus 29 ~fe~lP~dw~CP--~Cg~ 44 (54)
T 4rxn_A 29 DFKDIPDDWVCP--LCGV 44 (54)
T ss_dssp CGGGSCTTCBCT--TTCC
T ss_pred ChhHCCCCCcCc--CCCC
Confidence 466778899999 6654
No 44
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=74.20 E-value=3.1 Score=27.29 Aligned_cols=43 Identities=33% Similarity=0.718 Sum_probs=23.6
Q ss_pred CCeeccccCccccccccccccCCCCCCCCCCCcccccccccccCCCcccCCCCCCC
Q 032350 19 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 19 gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 74 (142)
..|.|..|+++-.... +-|..+ ..++ ..+...+.||.|+ .|+.
T Consensus 34 ~~y~C~vCGyvYD~~~------Gdp~~g-I~pG----T~fedlPddW~CP--vCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEAL------GDEAEG-FTPG----TRFEDIPDDWCCP--DCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTS------CCTTTT-CCSC----CCGGGCCTTCCCS--SSCC
T ss_pred ceEECCCCCeEecCCc------CCcccC-cCCC----CChhHCCCCCCCC--CCCC
Confidence 4699999997732211 111111 0111 2456678899999 5554
No 45
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.42 E-value=2 Score=25.47 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=18.7
Q ss_pred CCeeccccCccccccccccccCCCC
Q 032350 19 GDWMCAACQHQNFKKREACQRCGYP 43 (142)
Q Consensus 19 gdW~C~~C~~~Nf~~r~~C~~C~~p 43 (142)
...+|+.|+..|-.....|.+|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4567888888877777777777764
No 46
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.04 E-value=4 Score=27.17 Aligned_cols=21 Identities=33% Similarity=1.009 Sum_probs=15.6
Q ss_pred CCCCCeeccccCccccccccccccCCCCC
Q 032350 16 LPGGDWMCAACQHQNFKKREACQRCGYPK 44 (142)
Q Consensus 16 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~pr 44 (142)
++.++|.|+.|. .|..|+.+.
T Consensus 44 ~~~~~W~C~~C~--------~C~~C~~~~ 64 (111)
T 2ysm_A 44 LKRAGWQCPECK--------VCQNCKQSG 64 (111)
T ss_dssp TTSTTCCCTTTC--------CCTTTCCCS
T ss_pred ccccCccCCcCC--------cccccCccC
Confidence 356899999985 577777654
No 47
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.51 E-value=5.9 Score=26.52 Aligned_cols=21 Identities=33% Similarity=0.857 Sum_probs=15.8
Q ss_pred cccCCCcccCCCCCCCeecCCCcCccccCCC
Q 032350 59 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAA 89 (142)
Q Consensus 59 ~~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~ 89 (142)
....++|.|+ .|. .|..|+..
T Consensus 50 ~~~~~~W~C~--~C~--------~C~vC~~~ 70 (112)
T 3v43_A 50 RVKALRWQCI--ECK--------TCSSCRDQ 70 (112)
T ss_dssp HHHTSCCCCT--TTC--------CBTTTCCC
T ss_pred Hhhccccccc--cCC--------ccccccCc
Confidence 3467899999 886 57777754
No 48
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=66.72 E-value=2.7 Score=26.94 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=15.4
Q ss_pred CCCeeccccCccccccccc
Q 032350 18 GGDWMCAACQHQNFKKREA 36 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~ 36 (142)
-.+|.|+-|.+.|-.....
T Consensus 15 ~~tWVCpICsfsN~v~s~f 33 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEF 33 (76)
T ss_dssp CEEEECTTTCCEEEESSCC
T ss_pred ccceECccccccCcCcccc
Confidence 4689999999998876654
No 49
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=65.91 E-value=3.4 Score=24.91 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=23.5
Q ss_pred CCCcccCCCCCCCeecCCCcCccccCCC
Q 032350 62 AGDWYCTAMNCGAHNYASRPNCYRCGAA 89 (142)
Q Consensus 62 ~gdW~C~~~~C~~~N~~~r~~C~~C~~~ 89 (142)
-..++|- .|+..|-.+++.|.+||..
T Consensus 17 ~~k~ICr--kC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 17 FLKKVCR--KCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCCEEET--TTCCEECTTCSSCTTTCCC
T ss_pred hchhhhc--cccCcCCcccccccCCCCC
Confidence 3579999 9999999999999999954
No 50
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.71 E-value=4.2 Score=24.00 Aligned_cols=25 Identities=32% Similarity=0.774 Sum_probs=19.6
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCC
Q 032350 63 GDWYCTAMNCGAHNYASRPNCYRCGAA 89 (142)
Q Consensus 63 gdW~C~~~~C~~~N~~~r~~C~~C~~~ 89 (142)
...+|+ .|+..|-.....|..||..
T Consensus 13 ~k~iCp--kC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCL--RCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECT--TTCCEECTTCSSCSSSSSC
T ss_pred CCccCC--CCCCcCCCCceecCCCCCc
Confidence 467888 8888888888888888766
No 51
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=63.00 E-value=5.4 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.597 Sum_probs=21.3
Q ss_pred CCCCeeccccCccccc-cccccccCCCCCC
Q 032350 17 PGGDWMCAACQHQNFK-KREACQRCGYPKY 45 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~-~r~~C~~C~~prp 45 (142)
.+..|.|+.|+++-.. -...|..|+.|+.
T Consensus 135 ~~~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 135 IKKVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CSCEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CCCeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 4567999999987442 3458888888764
No 52
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=62.38 E-value=1.9 Score=23.01 Aligned_cols=13 Identities=38% Similarity=1.165 Sum_probs=10.3
Q ss_pred ccccCCCcccCCCCC
Q 032350 58 TEVLAGDWYCTAMNC 72 (142)
Q Consensus 58 ~~~~~gdW~C~~~~C 72 (142)
..+++|||-|. .|
T Consensus 12 pnpregdwcch--kc 24 (36)
T 4b2u_A 12 PNPREGDWCCH--KC 24 (36)
T ss_dssp CCGGGCCSSSS--EE
T ss_pred cCCCccCeeee--cc
Confidence 45678999998 66
No 53
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.58 E-value=3.7 Score=27.69 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=14.5
Q ss_pred CCCCeeccccCccccccccccccCCCCC
Q 032350 17 PGGDWMCAACQHQNFKKREACQRCGYPK 44 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~r~~C~~C~~pr 44 (142)
+.++|.|+.|. .|..|+...
T Consensus 49 ~~~~W~C~~C~--------~C~~C~~~~ 68 (114)
T 2kwj_A 49 KTYKWQCIECK--------SCILCGTSE 68 (114)
T ss_dssp HHTTCCCGGGC--------CCTTTTCCT
T ss_pred CCCccCccccC--------ccCcccccC
Confidence 35799999884 577777653
No 54
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=56.38 E-value=5.4 Score=28.97 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=21.8
Q ss_pred CCCcccCCCCCCCeecCC-CcCccccCCCCCC
Q 032350 62 AGDWYCTAMNCGAHNYAS-RPNCYRCGAAKTD 92 (142)
Q Consensus 62 ~gdW~C~~~~C~~~N~~~-r~~C~~C~~~~~~ 92 (142)
+..|+|+ .||++-... -..|+.|++++..
T Consensus 136 ~~~~~C~--~CG~i~~~~~p~~CP~Cg~~~~~ 165 (170)
T 3pwf_A 136 KKVYICP--ICGYTAVDEAPEYCPVCGAPKEK 165 (170)
T ss_dssp SCEEECT--TTCCEEESCCCSBCTTTCCBGGG
T ss_pred CCeeEeC--CCCCeeCCCCCCCCCCCCCCHHH
Confidence 4569999 999985542 3489999988653
No 55
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.62 E-value=8.9 Score=22.85 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCCCCCcccccccccccCCCcccCCCCCCCee
Q 032350 30 NFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHN 76 (142)
Q Consensus 30 Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N 76 (142)
+|.....|..|+..... .....|+++|. .||.+-
T Consensus 7 ~ll~~~~Cp~C~~~~lv-----------~D~~~ge~vC~--~CGlVl 40 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILV-----------EDYRAGDMICP--ECGLVV 40 (58)
T ss_dssp CCCSCCSBTTBSSSCCE-----------ECSSSCCEECT--TTCCEE
T ss_pred hccccccCcCCCCCcee-----------EeCCCCeEEeC--CCCCEE
Confidence 44455567777653311 23356789999 888764
No 56
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.32 E-value=22 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=14.7
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCC
Q 032350 60 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKT 91 (142)
Q Consensus 60 ~~~gdW~C~~~~C~~~N~~~r~~C~~C~~~~~ 91 (142)
..+++|.|. .|. |..|+....
T Consensus 17 ~~~~~W~C~--~C~---------C~vC~~~~d 37 (77)
T 3shb_A 17 KDDVNRLCR--VCA---------CHLCGGRQD 37 (77)
T ss_dssp TTCTTSCCT--TTS---------BTTTCCCSC
T ss_pred CCCCCCCCC--CCc---------CCccCCCCC
Confidence 345799999 772 777876653
No 57
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=51.32 E-value=6.4 Score=28.90 Aligned_cols=26 Identities=31% Similarity=0.728 Sum_probs=20.0
Q ss_pred CeeccccCccccc--cccccccCCCCCC
Q 032350 20 DWMCAACQHQNFK--KREACQRCGYPKY 45 (142)
Q Consensus 20 dW~C~~C~~~Nf~--~r~~C~~C~~prp 45 (142)
-|.|..|++.-.. -...|..|+.|+.
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 7999999988432 3458999998864
No 58
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=48.61 E-value=21 Score=21.83 Aligned_cols=10 Identities=40% Similarity=1.597 Sum_probs=8.4
Q ss_pred CC-CcccCCCCCC
Q 032350 62 AG-DWYCTAMNCG 73 (142)
Q Consensus 62 ~g-dW~C~~~~C~ 73 (142)
.| +|.|+ .|.
T Consensus 57 ~g~~W~C~--~C~ 67 (70)
T 3asl_A 57 SEDEWYCP--ECR 67 (70)
T ss_dssp SSSCCCCT--TTS
T ss_pred CCCCcCCc--Ccc
Confidence 56 99999 885
No 59
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=47.68 E-value=8.6 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCcccCCCCCCCeecCCC-cCccccCCCCC
Q 032350 63 GDWYCTAMNCGAHNYASR-PNCYRCGAAKT 91 (142)
Q Consensus 63 gdW~C~~~~C~~~N~~~r-~~C~~C~~~~~ 91 (142)
.-|.|. .||++-.+.. ..|+.|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 469999 9999955433 47888888764
No 60
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=45.98 E-value=11 Score=22.50 Aligned_cols=15 Identities=33% Similarity=1.163 Sum_probs=11.6
Q ss_pred CCCCCeeccccCccc
Q 032350 16 LPGGDWMCAACQHQN 30 (142)
Q Consensus 16 ~~~gdW~C~~C~~~N 30 (142)
...|+|.|+.|....
T Consensus 45 ~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 45 APEGKWSCPHCEKEG 59 (61)
T ss_dssp CCCSSCCCTTGGGGS
T ss_pred CCCCceECccccccc
Confidence 456999999997653
No 61
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.03 E-value=10 Score=21.43 Aligned_cols=13 Identities=54% Similarity=1.518 Sum_probs=10.1
Q ss_pred CCCCCeeccccCc
Q 032350 16 LPGGDWMCAACQH 28 (142)
Q Consensus 16 ~~~gdW~C~~C~~ 28 (142)
...|+|.|+.|..
T Consensus 37 ~P~g~W~C~~C~~ 49 (51)
T 1f62_A 37 VPDGEWQCPACQP 49 (51)
T ss_dssp CCSSCCSCTTTSC
T ss_pred CCCCcEECcCccc
Confidence 3468999999964
No 62
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=44.39 E-value=8.8 Score=28.13 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=20.9
Q ss_pred CcccCCCCCCCeecC--CCcCccccCCCCCC
Q 032350 64 DWYCTAMNCGAHNYA--SRPNCYRCGAAKTD 92 (142)
Q Consensus 64 dW~C~~~~C~~~N~~--~r~~C~~C~~~~~~ 92 (142)
-|.|. .||++=.+ .-..|+.|++++..
T Consensus 155 ~~~C~--~CG~~~~g~~~p~~CP~C~~~k~~ 183 (191)
T 1lko_A 155 KWRCR--NCGYVHEGTGAPELCPACAHPKAH 183 (191)
T ss_dssp EEEET--TTCCEEEEEECCSBCTTTCCBGGG
T ss_pred eEEEC--CCCCEeeCCCCCCCCCCCcCCHHH
Confidence 69999 99999543 23489999998754
No 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.51 E-value=18 Score=26.83 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=16.5
Q ss_pred CCCeeccccCccccc-cccccccCCCCC
Q 032350 18 GGDWMCAACQHQNFK-KREACQRCGYPK 44 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~-~r~~C~~C~~pr 44 (142)
..-|.|..|++.-.. ....|..|+.|+
T Consensus 169 ~~~~~C~~CG~i~~g~~p~~CP~C~~~k 196 (202)
T 1yuz_A 169 DKFHLCPICGYIHKGEDFEKCPICFRPK 196 (202)
T ss_dssp CCEEECSSSCCEEESSCCSBCTTTCCBG
T ss_pred CcEEEECCCCCEEcCcCCCCCCCCCCCh
Confidence 357999999988432 123455555544
No 64
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.19 E-value=18 Score=23.57 Aligned_cols=15 Identities=33% Similarity=1.148 Sum_probs=11.4
Q ss_pred CCCCCCeeccccCcc
Q 032350 15 SLPGGDWMCAACQHQ 29 (142)
Q Consensus 15 ~~~~gdW~C~~C~~~ 29 (142)
+...|+|.|+.|...
T Consensus 58 ~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 58 DVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCSSSCCCCSCCCC
T ss_pred CCcCCCcCCccccCC
Confidence 345699999999654
No 65
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.79 E-value=14 Score=21.18 Aligned_cols=15 Identities=40% Similarity=1.097 Sum_probs=11.1
Q ss_pred ccccCCCcccCCCCCCC
Q 032350 58 TEVLAGDWYCTAMNCGA 74 (142)
Q Consensus 58 ~~~~~gdW~C~~~~C~~ 74 (142)
+...+.||.|+ .|+.
T Consensus 24 f~~lP~dw~CP--~Cg~ 38 (46)
T 6rxn_A 24 FDQLPDDWCCP--VCGV 38 (46)
T ss_dssp GGGSCTTCBCT--TTCC
T ss_pred hhhCCCCCcCc--CCCC
Confidence 45567799999 6664
No 66
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.36 E-value=20 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCCCeeccccCccccc--ccc-ccccCCCCCC
Q 032350 17 PGGDWMCAACQHQNFK--KRE-ACQRCGYPKY 45 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~--~r~-~C~~C~~prp 45 (142)
.++.|.|..|++.-.. ... .|..|+.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 3889999999876432 344 7999998854
No 67
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=36.15 E-value=18 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=10.7
Q ss_pred CCCCCCeeccccCc
Q 032350 15 SLPGGDWMCAACQH 28 (142)
Q Consensus 15 ~~~~gdW~C~~C~~ 28 (142)
....|+|.|+.|..
T Consensus 45 ~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 45 SRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCSSSCCCTTTTT
T ss_pred cCCCCCEECccccC
Confidence 34569999999954
No 68
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=35.23 E-value=87 Score=20.35 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCeeccccCccccccccccccCCCCCCC--------CCCCcccccccccccCCCcccCCCCCCCeecCC
Q 032350 18 GGDWMCAACQHQNFKKREACQRCGYPKYG--------GPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYAS 79 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~--------~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~~ 79 (142)
+.|=.|..|...--..-..|..|..--.. ..+...........-+..|.|. .|.++|.--
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~--~CenL~lLL 80 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCH--YCDNINLLL 80 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCT--TTCCCCSSS
T ss_pred CCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccc--ccchhhhhc
Confidence 46668999987666666678888774221 1111111112234456789999 999998743
No 69
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=34.64 E-value=19 Score=21.37 Aligned_cols=14 Identities=36% Similarity=1.386 Sum_probs=10.6
Q ss_pred CCCCCeeccccCcc
Q 032350 16 LPGGDWMCAACQHQ 29 (142)
Q Consensus 16 ~~~gdW~C~~C~~~ 29 (142)
...|+|.|+.|...
T Consensus 43 ~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 43 IPNGEWLCPRCTCP 56 (61)
T ss_dssp CCSSCCCCTTTTTT
T ss_pred CCCCccCChhhcCc
Confidence 34689999999643
No 70
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.57 E-value=6 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.769 Sum_probs=12.6
Q ss_pred CCCCeeccccCcccccc
Q 032350 17 PGGDWMCAACQHQNFKK 33 (142)
Q Consensus 17 ~~gdW~C~~C~~~Nf~~ 33 (142)
..|+|.|+.|...+-.+
T Consensus 49 p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 49 SDEKWLCRQCVFATTTK 65 (66)
T ss_dssp SSCCCCCHHHHHTTSCC
T ss_pred CCCCEECCCCcCccccC
Confidence 46899999997665443
No 71
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=32.72 E-value=23 Score=24.69 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=11.5
Q ss_pred CCCeeccccCcccc
Q 032350 18 GGDWMCAACQHQNF 31 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf 31 (142)
++.|.|..|++.-.
T Consensus 68 p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 68 EAVFKCRNCNYEWK 81 (139)
T ss_dssp CCEEEETTTCCEEE
T ss_pred CCcEECCCCCCEEe
Confidence 78999999987743
No 72
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.16 E-value=30 Score=19.39 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=6.2
Q ss_pred CCCeeecCCCCCc
Q 032350 113 SGDWICNRMGCGV 125 (142)
Q Consensus 113 ~gdW~C~~~~C~~ 125 (142)
.++++|. .|+.
T Consensus 22 ~gelvC~--~CG~ 32 (50)
T 1pft_A 22 RGEIVCA--KCGY 32 (50)
T ss_dssp TTEEEES--SSCC
T ss_pred CCeEECc--ccCC
Confidence 3556666 4655
No 73
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=31.05 E-value=21 Score=21.99 Aligned_cols=14 Identities=29% Similarity=1.032 Sum_probs=10.6
Q ss_pred CCCeeccccCcccc
Q 032350 18 GGDWMCAACQHQNF 31 (142)
Q Consensus 18 ~gdW~C~~C~~~Nf 31 (142)
.|+|.|+.|...+-
T Consensus 54 ~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 54 RGKWFCPRCSQESG 67 (71)
T ss_dssp SSCCCCTTTSSCSS
T ss_pred CCCEECCCCCcccc
Confidence 48999999966543
No 74
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.57 E-value=29 Score=26.40 Aligned_cols=11 Identities=36% Similarity=1.383 Sum_probs=8.6
Q ss_pred cCC-CcccCCCCCC
Q 032350 61 LAG-DWYCTAMNCG 73 (142)
Q Consensus 61 ~~g-dW~C~~~~C~ 73 (142)
..| +|.|+ .|.
T Consensus 212 P~G~~W~Cp--~C~ 223 (226)
T 3ask_A 212 PSEDEWYCP--ECR 223 (226)
T ss_dssp CSSSCCCCG--GGC
T ss_pred CCCCCCCCc--CCc
Confidence 357 99999 884
No 75
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.49 E-value=13 Score=22.43 Aligned_cols=15 Identities=33% Similarity=1.221 Sum_probs=11.1
Q ss_pred CCCCCeeccccCccc
Q 032350 16 LPGGDWMCAACQHQN 30 (142)
Q Consensus 16 ~~~gdW~C~~C~~~N 30 (142)
...|+|.|+.|....
T Consensus 42 ~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 42 IPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCSSCCCCHHHHHTC
T ss_pred CCCCCeECccccCcc
Confidence 345899999996543
No 76
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.76 E-value=13 Score=21.62 Aligned_cols=13 Identities=46% Similarity=1.418 Sum_probs=9.7
Q ss_pred CCCCCeeccccCc
Q 032350 16 LPGGDWMCAACQH 28 (142)
Q Consensus 16 ~~~gdW~C~~C~~ 28 (142)
...|+|.|+.|..
T Consensus 43 ~p~g~W~C~~C~~ 55 (56)
T 2yql_A 43 IPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCCHHHHC
T ss_pred CCCCceEChhhhC
Confidence 3468999998853
No 77
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.66 E-value=19 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=7.2
Q ss_pred CeeccccCcccc
Q 032350 20 DWMCAACQHQNF 31 (142)
Q Consensus 20 dW~C~~C~~~Nf 31 (142)
...||.|+..-|
T Consensus 18 ~~fCPkCG~~~~ 29 (55)
T 2k4x_A 18 HRFCPRCGPGVF 29 (55)
T ss_dssp SCCCTTTTTTCC
T ss_pred cccCcCCCCcee
Confidence 456777766443
No 78
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.06 E-value=57 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccccccccccCCCCCCCCCCCcccccccccccCCCcccCCCCCCCee
Q 032350 30 NFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHN 76 (142)
Q Consensus 30 Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N 76 (142)
|+.....|..|+...|.-. .....|+.+|. .||.+=
T Consensus 17 ~~~~~~~Cp~Cg~~~~~iv---------~D~~~G~~vC~--~CG~Vl 52 (345)
T 3k7a_M 17 NLNIVLTCPECKVYPPKIV---------ERFSEGDVVCA--LCGLVL 52 (345)
T ss_dssp CCCCCCCCSTTCCSCCCCC---------CCSSSCSCCCS--SSCCCC
T ss_pred cccCCCcCcCCCCCCCceE---------EECCCCCEecC--CCCeEc
Confidence 4445667888877533211 23456899999 888864
No 79
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=24.81 E-value=28 Score=17.93 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=9.7
Q ss_pred ccccCCCcccCCCCC
Q 032350 58 TEVLAGDWYCTAMNC 72 (142)
Q Consensus 58 ~~~~~gdW~C~~~~C 72 (142)
.+.+-|||-|. .|
T Consensus 12 dpekmgdwccg--rc 24 (32)
T 4b2v_A 12 DPEKMGDWCCG--RC 24 (32)
T ss_dssp CTTTTCCCCSS--EE
T ss_pred ChHHhcchhhh--HH
Confidence 44567999998 65
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.31 E-value=20 Score=21.03 Aligned_cols=15 Identities=47% Similarity=1.241 Sum_probs=11.1
Q ss_pred CCCCCeeccccCccc
Q 032350 16 LPGGDWMCAACQHQN 30 (142)
Q Consensus 16 ~~~gdW~C~~C~~~N 30 (142)
...|+|.|+.|....
T Consensus 39 ~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 39 IPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSCCCCHHHHHHH
T ss_pred CCCCceEChhccChh
Confidence 346899999996543
No 81
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=36 Score=21.25 Aligned_cols=12 Identities=33% Similarity=1.245 Sum_probs=9.4
Q ss_pred CCCC-CeeccccC
Q 032350 16 LPGG-DWMCAACQ 27 (142)
Q Consensus 16 ~~~g-dW~C~~C~ 27 (142)
...| +|.|+.|.
T Consensus 63 ~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 63 VPEEEYWYCPSCK 75 (77)
T ss_dssp CCCSSCCCCTTTC
T ss_pred CCCCCCcCCcCcc
Confidence 3467 99999995
No 82
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.62 E-value=29 Score=19.99 Aligned_cols=13 Identities=31% Similarity=1.117 Sum_probs=10.0
Q ss_pred CCcccCCCCCCCeec
Q 032350 63 GDWYCTAMNCGAHNY 77 (142)
Q Consensus 63 gdW~C~~~~C~~~N~ 77 (142)
+.|.|+ .|++.-|
T Consensus 36 ~R~~C~--kCG~t~~ 48 (50)
T 3j20_Y 36 DRWACG--KCGYTEW 48 (50)
T ss_dssp SEEECS--SSCCEEE
T ss_pred CeEECC--CCCCEEE
Confidence 468888 8888765
No 83
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=23.35 E-value=29 Score=24.19 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.0
Q ss_pred eccccCccccccccccccCCCCC
Q 032350 22 MCAACQHQNFKKREACQRCGYPK 44 (142)
Q Consensus 22 ~C~~C~~~Nf~~r~~C~~C~~pr 44 (142)
.|..|+..-|..|..|..|+...
T Consensus 49 rC~~CG~~~~PPr~~Cp~C~s~~ 71 (145)
T 3irb_A 49 KCSKCGRIFVPARSYCEHCFVKI 71 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEEC
T ss_pred EeCCCCcEEcCchhhCcCCCCCc
Confidence 59999999999999999999864
No 84
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.67 E-value=65 Score=21.63 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=22.2
Q ss_pred cCCCcccCCCCCCCeec----CCCcCccccCCCCCC
Q 032350 61 LAGDWYCTAMNCGAHNY----ASRPNCYRCGAAKTD 92 (142)
Q Consensus 61 ~~gdW~C~~~~C~~~N~----~~r~~C~~C~~~~~~ 92 (142)
.--...|. .||+. | .....|++|+..+-.
T Consensus 64 ~v~p~~C~--~CG~~-F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 64 LIKPAQCR--KCGFV-FKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp EECCCBBT--TTCCB-CCCCSSCCSSCSSSCCCCBC
T ss_pred EEECcChh--hCcCe-ecccCCCCCCCcCCCCCccC
Confidence 34477899 99999 7 466889999877644
No 85
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.30 E-value=32 Score=24.13 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=0.0
Q ss_pred eccccCccccccccccccCC
Q 032350 22 MCAACQHQNFKKREACQRCG 41 (142)
Q Consensus 22 ~C~~C~~~Nf~~r~~C~~C~ 41 (142)
.|..|+..-|..|..|..|+
T Consensus 49 rC~~CG~~~fPPr~~Cp~C~ 68 (145)
T 2gnr_A 49 KCSKCGRIFVPARSYCEHCF 68 (145)
T ss_dssp ECTTTCCEEESCCSEETTTT
T ss_pred EECCCCcEEeCCCCCCCCCC
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.13 E-value=38 Score=21.99 Aligned_cols=13 Identities=31% Similarity=1.244 Sum_probs=9.8
Q ss_pred CCCeeccccCccc
Q 032350 18 GGDWMCAACQHQN 30 (142)
Q Consensus 18 ~gdW~C~~C~~~N 30 (142)
.++|.|+.|...+
T Consensus 74 ~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 74 RGKWFCPRCSQES 86 (91)
T ss_dssp CSSCCCTTTCCCC
T ss_pred CCCEECcCccCcC
Confidence 5889999886544
No 87
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.56 E-value=17 Score=22.44 Aligned_cols=13 Identities=38% Similarity=1.416 Sum_probs=10.3
Q ss_pred CCCCCeeccccCc
Q 032350 16 LPGGDWMCAACQH 28 (142)
Q Consensus 16 ~~~gdW~C~~C~~ 28 (142)
...|+|.|+.|..
T Consensus 53 vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 53 IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCCCCHHHHH
T ss_pred CCCCCcCCccCcC
Confidence 3469999999954
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.26 E-value=24 Score=22.77 Aligned_cols=15 Identities=33% Similarity=0.973 Sum_probs=11.2
Q ss_pred CCCCCCeeccccCcc
Q 032350 15 SLPGGDWMCAACQHQ 29 (142)
Q Consensus 15 ~~~~gdW~C~~C~~~ 29 (142)
.+..|+|.|+.|...
T Consensus 52 ~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 52 EIPRGIWRCPKCILA 66 (92)
T ss_dssp SCCSSCCCCHHHHHH
T ss_pred cCCCCCcCCccCcCc
Confidence 345689999999653
No 89
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=20.50 E-value=41 Score=23.43 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=21.3
Q ss_pred ccCCCCCCCeecCCCcCccccCCCCC
Q 032350 66 YCTAMNCGAHNYASRPNCYRCGAAKT 91 (142)
Q Consensus 66 ~C~~~~C~~~N~~~r~~C~~C~~~~~ 91 (142)
.|. .|+..-|.-+..|..|+....
T Consensus 49 rC~--~CG~~~~PPr~~Cp~C~s~~~ 72 (145)
T 3irb_A 49 KCS--KCGRIFVPARSYCEHCFVKIE 72 (145)
T ss_dssp ECT--TTCCEEESCCSEETTTTEECC
T ss_pred EeC--CCCcEEcCchhhCcCCCCCce
Confidence 499 999999999999999997654
No 90
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=20.36 E-value=25 Score=17.97 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=5.9
Q ss_pred CeeccccC
Q 032350 20 DWMCAACQ 27 (142)
Q Consensus 20 dW~C~~C~ 27 (142)
||.|-+|.
T Consensus 1 dwtcwscl 8 (31)
T 2lbz_A 1 DWTCWSCL 8 (31)
T ss_dssp CCCTTGGG
T ss_pred CccHHHHH
Confidence 68887774
Done!