BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032351
         (142 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LFA5|MED28_ARATH Mediator of RNA polymerase II transcription subunit 28
           OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1
          Length = 156

 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 108/133 (81%), Gaps = 6/133 (4%)

Query: 16  LQSPQ-PSRDDMN----MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 70
           ++SP+ PS +  N    +++CVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF
Sbjct: 24  IRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 83

Query: 71  MEAAKKLQLYFISLQREDQ-PTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129
           MEAAKKLQLYF+ L+RED+ P+  E L+KDIA+MEEELK K ELIKK  RL Q  +  +K
Sbjct: 84  MEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKLVK 143

Query: 130 GQLDKHITELERV 142
            Q++KH  ELE+V
Sbjct: 144 EQIEKHRDELEKV 156


>sp|B6ZK76|IRL1A_DANRE Interleukin-1 receptor accessory protein-like 1-A OS=Danio rerio
           GN=il1rapl1a PE=2 SV=1
          Length = 701

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 3   QQAAADHQQLDSPLQSPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQID 62
           QQ   +H  LD+    P      ++ IS  TA  AAL P  P  EL+   RS + SH + 
Sbjct: 569 QQTITNHA-LDTSEPGPFADLQTVSAISMATATSAALAPAHP--ELRPSLRSSYRSHSLA 625

Query: 63  VERHA 67
            ++H+
Sbjct: 626 RQKHS 630


>sp|P44183|Y1409_HAEIN Uncharacterized protein HI_1409 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1409 PE=4 SV=1
          Length = 436

 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 73  AAKKLQLYFI-SLQREDQPTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWR----ND 127
            +K+ Q Y+   L   D   ++E L +D  I      A K  IK+ E +V+ WR    ND
Sbjct: 15  GSKQDQTYYARGLSLTDDLMQIEALWRDNWI------ANKVCIKRSEDMVRNWRDIFSND 68

Query: 128 LKGQLDKHITELER 141
           LK +     T+LER
Sbjct: 69  LKSEQLDEFTKLER 82


>sp|P43870|T2D3_HAEIN Type-2 restriction enzyme HindIII OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hindIIIR PE=1
           SV=1
          Length = 300

 Score = 29.3 bits (64), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 58  SHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAIMEEELKAKKELIKKQ 117
           S +  V     +FM    K   YF+ L + D+ T  ++L+K+I  +EE    +KE  KKQ
Sbjct: 200 SKKTSVSDAENNFMRDFNK---YFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQ 256

Query: 118 ERLVQRW 124
             +++ +
Sbjct: 257 INIIKNF 263


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,146,419
Number of Sequences: 539616
Number of extensions: 1884235
Number of successful extensions: 10837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 10649
Number of HSP's gapped (non-prelim): 362
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)