Query 032351
Match_columns 142
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 21:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fla_A Regulation of nuclear P 86.4 8.7 0.0003 28.8 11.7 113 23-139 22-147 (152)
2 3nmd_A CGMP dependent protein 79.0 7.5 0.00026 26.8 6.5 33 96-128 24-56 (72)
3 1gmj_A ATPase inhibitor; coile 78.0 9.8 0.00034 26.9 7.0 36 96-134 45-80 (84)
4 2jee_A YIIU; FTSZ, septum, coi 74.6 13 0.00044 26.0 6.8 25 110-134 53-77 (81)
5 3a7p_A Autophagy protein 16; c 69.7 16 0.00055 28.2 6.9 43 94-136 64-106 (152)
6 1zxa_A CGMP-dependent protein 67.5 7 0.00024 26.5 4.0 32 98-129 25-56 (67)
7 3oja_B Anopheles plasmodium-re 67.4 48 0.0016 27.1 9.7 40 95-134 541-580 (597)
8 1gs9_A Apolipoprotein E, APOE4 64.0 31 0.0011 25.8 7.4 69 68-139 62-133 (165)
9 2pih_A Protein YMCA; regulate 60.3 46 0.0016 24.1 8.2 95 26-131 7-105 (151)
10 4dzn_A Coiled-coil peptide CC- 54.2 7.2 0.00025 23.7 1.9 14 95-108 13-26 (33)
11 3viq_B Mating-type switching p 53.2 6.7 0.00023 27.7 1.9 35 95-130 19-55 (85)
12 3a7o_A Autophagy protein 16; c 52.4 58 0.002 22.8 7.0 36 92-127 12-47 (75)
13 3okq_A BUD site selection prot 51.9 77 0.0026 24.2 8.3 46 85-130 46-94 (141)
14 2inr_A DNA topoisomerase 4 sub 50.2 37 0.0013 30.2 6.6 47 91-137 454-500 (514)
15 1nfn_A Apolipoprotein E3; lipi 47.9 66 0.0023 24.2 6.9 40 68-107 62-104 (191)
16 1yke_B RNA polymerase II holoe 45.1 93 0.0032 23.1 10.3 64 61-129 57-123 (151)
17 3nmd_A CGMP dependent protein 43.9 75 0.0026 21.8 6.1 18 99-116 41-58 (72)
18 3ilw_A DNA gyrase subunit A; D 43.9 46 0.0016 29.4 6.1 44 94-137 419-462 (470)
19 1ykh_B RNA polymerase II holoe 39.8 1E+02 0.0035 22.2 10.4 66 60-130 56-124 (132)
20 2nov_A DNA topoisomerase 4 sub 39.4 49 0.0017 29.3 5.6 46 92-137 431-476 (496)
21 2oeq_A Protein of unknown func 39.1 93 0.0032 21.4 8.2 92 27-131 7-103 (122)
22 2p2u_A HOST-nuclease inhibitor 37.1 1.2E+02 0.0039 22.6 6.7 31 98-128 23-53 (171)
23 3qfl_A MLA10; coiled-coil, (CC 36.6 50 0.0017 22.6 4.3 37 95-131 23-67 (115)
24 3kin_B Kinesin heavy chain; mo 35.7 55 0.0019 23.1 4.5 62 61-126 56-117 (117)
25 2iaz_A Hypothetical protein SP 34.1 1E+02 0.0035 20.5 5.7 92 27-131 4-100 (113)
26 1gmj_A ATPase inhibitor; coile 30.3 92 0.0032 21.9 4.8 53 71-124 25-77 (84)
27 3rrk_A V-type ATPase 116 kDa s 29.8 1.7E+02 0.0058 22.7 6.8 42 95-136 230-275 (357)
28 4etp_A Kinesin-like protein KA 29.4 1.1E+02 0.0036 25.5 5.8 38 92-129 4-41 (403)
29 2oee_A UPF0342 protein YHEA; M 29.2 67 0.0023 21.6 3.9 92 27-131 4-100 (117)
30 3oja_B Anopheles plasmodium-re 29.2 1.3E+02 0.0045 24.5 6.3 35 95-129 460-494 (597)
31 3caz_A BAR protein; thermo-aci 28.9 1.4E+02 0.0048 24.9 6.5 33 61-102 91-123 (294)
32 1deb_A APC protein, adenomatou 28.2 1.3E+02 0.0045 19.9 6.6 38 93-130 12-49 (54)
33 1t3j_A Mitofusin 1; coiled coi 28.0 79 0.0027 22.6 4.2 26 95-120 51-76 (96)
34 1jli_A Interleukin 3, multi-CS 28.0 72 0.0025 23.7 4.1 20 38-61 67-86 (112)
35 2zqm_A Prefoldin beta subunit 27.8 1.3E+02 0.0045 19.7 6.5 38 95-132 74-111 (117)
36 2l7b_A Apolipoprotein E, APO-E 27.7 1.6E+02 0.0056 23.9 6.6 25 70-94 72-96 (307)
37 3gp4_A Transcriptional regulat 27.6 1.6E+02 0.0056 20.7 6.3 37 94-130 84-120 (142)
38 3gpv_A Transcriptional regulat 27.5 89 0.003 22.1 4.5 37 94-130 98-134 (148)
39 2xkj_E Topoisomerase IV; type 26.9 1E+02 0.0035 28.7 5.8 45 93-137 698-742 (767)
40 3ezh_A Nitrate/nitrite sensor 26.9 1.5E+02 0.0052 20.4 5.5 35 98-132 35-77 (125)
41 2xcs_B DNA gyrase subunit B, D 26.7 1.4E+02 0.0048 27.6 6.6 48 90-137 636-683 (692)
42 2aze_B Transcription factor E2 26.5 1.6E+02 0.0054 20.7 5.5 33 90-122 5-37 (106)
43 1fxk_A Prefoldin; archaeal pro 25.9 1.4E+02 0.0048 19.4 5.5 36 95-130 69-104 (107)
44 1bb1_B Designed, thermostable 24.8 1.1E+02 0.0037 18.7 3.8 14 96-109 14-27 (36)
45 2yy0_A C-MYC-binding protein; 24.7 1.3E+02 0.0046 18.8 4.9 19 90-108 16-36 (53)
46 3ra3_B P2F; coiled coil domain 23.1 85 0.0029 18.3 3.0 16 94-109 10-25 (28)
47 4fhr_B Flagellar motor switch 21.1 73 0.0025 24.6 3.2 47 33-79 159-208 (216)
48 3ghg_C Fibrinogen gamma chain; 20.9 4.1E+02 0.014 22.9 10.4 68 62-131 49-117 (411)
49 2q9r_A Protein of unknown func 20.3 2.1E+02 0.0073 22.4 5.7 95 21-129 82-188 (200)
No 1
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=86.38 E-value=8.7 Score=28.82 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred CCchhHhHHHHHHHHhhc---------CCCccc--hhhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccC--
Q 032351 23 RDDMNMISCVTALEAALL---------PCLPAR--ELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ-- 89 (142)
Q Consensus 23 ~~~~d~~~~V~~lEaAll---------pCLpar--eLqaiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~-- 89 (142)
..-+|++.+++.||.+.- .-||.- +...+++-. .+-..++-...|-+++..|..|-=+|..+-.
T Consensus 22 ~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klk---Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR 98 (152)
T 4fla_A 22 LLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKIT---DKEAAERLSKTVDEACLLLAEYNGRLAAELEDR 98 (152)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344679999999997642 234433 444566655 6677999999999999999999877766543
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032351 90 PTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHITEL 139 (142)
Q Consensus 90 p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~el 139 (142)
..-.++|+.=++-.++.++......+-++++...=. .++..++.|+.-|
T Consensus 99 ~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~-~vkkeL~~hi~sL 147 (152)
T 4fla_A 99 RQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT-QVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC
Confidence 555668888888888888888887777777766543 3455666777544
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.99 E-value=7.5 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 96 LRKDIAIMEEELKAKKELIKKQERLVQRWRNDL 128 (142)
Q Consensus 96 lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L 128 (142)
|+..+..-.+||..||++|+..+..|+.--.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777777776666544433
No 3
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=77.98 E-value=9.8 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032351 96 LRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDK 134 (142)
Q Consensus 96 lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~k 134 (142)
||+.+ ++||..-.+-|++|.+.|..+++-+++...+
T Consensus 45 LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 45 LKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55544 6788888888888888888888888877544
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.60 E-value=13 Score=26.03 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032351 110 KKELIKKQERLVQRWRNDLKGQLDK 134 (142)
Q Consensus 110 KdELIkkh~~lI~~Wq~~L~dq~~k 134 (142)
++.=+.+-+.-...|+..|...++|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777888889999999999987
No 5
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.71 E-value=16 Score=28.18 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032351 94 EMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHI 136 (142)
Q Consensus 94 E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~ 136 (142)
.+.+..|..|+.|++....=|+....-|.++.+.+..+.+.|+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~ 106 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888788888777777777776666554
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=67.54 E-value=7 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 98 KDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129 (142)
Q Consensus 98 keI~~le~EL~~KdELIkkh~~lI~~Wq~~L~ 129 (142)
+.|.+||.+|..||+.|..-.+.+...+..|.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999998888887776663
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.45 E-value=48 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDK 134 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~k 134 (142)
.+++++..||..+..+.+.++.-++-+..|...++.+.++
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666665544
No 8
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=64.04 E-value=31 Score=25.77 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 032351 68 RDFMEAAKKLQLYFISLQREDQPTEVE---MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHITEL 139 (142)
Q Consensus 68 rdFmeaAkqLq~yFi~lQr~~~p~k~E---~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~el 139 (142)
..+-+-...+..|+-.+|..--|...+ .|.++...|+++|...-|=++ ..+..-...|..++.+|..|+
T Consensus 62 ~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR---~~l~p~~~el~~~l~~~~Eel 133 (165)
T 1gs9_A 62 ALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVR---GRLVQYRGEVQAMLGQSTEEL 133 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356667778899999999999999765 466666666666655433332 224444444444444444443
No 9
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=60.27 E-value=46 Score=24.14 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=62.6
Q ss_pred hhHhHHHHHHHHhhcCCCccchhh----cccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHH
Q 032351 26 MNMISCVTALEAALLPCLPARELQ----AIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIA 101 (142)
Q Consensus 26 ~d~~~~V~~lEaAllpCLpareLq----aiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~ 101 (142)
.+|.....+|..++.-|=-...++ +|+.|+ .|..-++.=+++|.=|-..|+-..+...+...+++.
T Consensus 7 ~~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~D~----------eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~ 76 (151)
T 2pih_A 7 KDIVQQARNLAKMISETEEVDFFKRAEAQINEND----------KVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKID 76 (151)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHH
Confidence 467777888888888776555544 444444 455555555555555555576554334456677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 102 IMEEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 102 ~le~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
.+..+|. ..++|+.....=+.+..+|.+-
T Consensus 77 ~l~~~l~-~np~V~~y~~Ae~~l~~LL~~I 105 (151)
T 2pih_A 77 ALQEELE-EIPVIQEFRDSQMEVNDLLQLV 105 (151)
T ss_dssp HHHHHHH-HSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHH
Confidence 8888886 4677888877777777777653
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=54.18 E-value=7.2 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELK 108 (142)
Q Consensus 95 ~lkkeI~~le~EL~ 108 (142)
.|||||+.|+-|++
T Consensus 13 alkkeiaalkfeia 26 (33)
T 4dzn_A 13 ALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 11
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.17 E-value=6.7 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAK--KELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 95 ~lkkeI~~le~EL~~K--dELIkkh~~lI~~Wq~~L~d 130 (142)
.|.++|+.++.+|+.. .+.+++|-+++-.+ |+++|
T Consensus 19 ~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~Y-NeiKD 55 (85)
T 3viq_B 19 QLESSLQDALAKLKNRDAKQTVQKHIDLLHTY-NEIRD 55 (85)
T ss_dssp HHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-hHHHH
Confidence 5555666666666554 56788888888776 45555
No 12
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=52.37 E-value=58 Score=22.84 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 92 EVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRND 127 (142)
Q Consensus 92 k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~ 127 (142)
-..+++.-|+.|++||+.||.=|.+-++-|..-.+-
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd 47 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN 47 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455888899999999999999998888777665443
No 13
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=51.95 E-value=77 Score=24.16 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=35.9
Q ss_pred hhccCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 032351 85 QREDQPTEVE--MLRKDIAIMEEELKAKKELIKKQERLV-QRWRNDLKG 130 (142)
Q Consensus 85 Qr~~~p~k~E--~lkkeI~~le~EL~~KdELIkkh~~lI-~~Wq~~L~d 130 (142)
+|.-.|++-. .+.+||..+..+|+.=.+-|++-+--. -.|.++|..
T Consensus 46 ~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~ 94 (141)
T 3okq_A 46 ERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDK 94 (141)
T ss_dssp HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 7777888665 899999999999999999888765433 247777754
No 14
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=50.23 E-value=37 Score=30.22 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 91 TEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 91 ~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
...+-|.+|+.+++.|++.-..++..-.++...|.++|.+...++-+
T Consensus 454 ~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 454 TDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 34558899999999999999999999999999999999999888754
No 15
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=47.89 E-value=66 Score=24.24 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCChHH---HHHHHHHHHHHHH
Q 032351 68 RDFMEAAKKLQLYFISLQREDQPTEVE---MLRKDIAIMEEEL 107 (142)
Q Consensus 68 rdFmeaAkqLq~yFi~lQr~~~p~k~E---~lkkeI~~le~EL 107 (142)
..+-+....|..|+-.++..-.|-..+ .|-++...+++++
T Consensus 62 ~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~~l 104 (191)
T 1nfn_A 62 ALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARL 104 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999898888888654 3444444444444
No 16
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.11 E-value=93 Score=23.14 Aligned_cols=64 Identities=8% Similarity=0.157 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 61 IDVERHARDFMEAAKKLQLYFISLQREDQPT---EVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129 (142)
Q Consensus 61 iDVErhardFmeaAkqLq~yFi~lQr~~~p~---k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~ 129 (142)
..+..-|+|+|..||+.+..-= .+|. .+|.--+.|..|++|++...+-..+--+.-..|.+.+.
T Consensus 57 ~~~~ela~dli~kakqIe~LId-----sLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 57 NTIDELSTDIILKTRQINKLID-----SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999985443 3444 34455667888888887665444433333333333333
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.91 E-value=75 Score=21.75 Aligned_cols=18 Identities=44% Similarity=0.444 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032351 99 DIAIMEEELKAKKELIKK 116 (142)
Q Consensus 99 eI~~le~EL~~KdELIkk 116 (142)
-|..++.+|..||++|+.
T Consensus 41 ~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 41 LIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478888888888888874
No 18
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=43.86 E-value=46 Score=29.35 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 94 EMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 94 E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
+-+.+|+.+|++|++.=.+++....++...|.++|.+...|+-+
T Consensus 419 ~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 419 QRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD 462 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 37888999999999999999999999999999999999888754
No 19
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.80 E-value=1e+02 Score=22.18 Aligned_cols=66 Identities=8% Similarity=0.158 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 60 QIDVERHARDFMEAAKKLQLYFISLQREDQPT---EVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 60 qiDVErhardFmeaAkqLq~yFi~lQr~~~p~---k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
...+..-|+|+|..||+.+..-= .+|. .++.--+.|..|++|++...+-..+--+.-..|.+.+.+
T Consensus 56 ~~~~~ela~dli~k~kqIe~LId-----sLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 56 SNTIDELSTDIILKTRQINKLID-----SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667789999999999985443 3454 344556678888888877655444443333444444333
No 20
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=39.35 E-value=49 Score=29.28 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 92 EVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 92 k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
..+-|.+|+.+++.|++.-..++..-.++...|.++|.+...++-+
T Consensus 431 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFAT 476 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3347888899999998888888888888899999999998888754
No 21
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=39.09 E-value=93 Score=21.41 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=61.1
Q ss_pred hHhHHHHHHHHhhcCCCccchhh----cccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccC-CChHHHHHHHHH
Q 032351 27 NMISCVTALEAALLPCLPARELQ----AIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ-PTEVEMLRKDIA 101 (142)
Q Consensus 27 d~~~~V~~lEaAllpCLpareLq----aiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~-p~k~E~lkkeI~ 101 (142)
+|+....+|..++.-|=-...+. +|+.|+ .|..-++-=+++|.-|-..|+..+ |+. + ..+++.
T Consensus 7 ~I~d~A~eL~~~I~~seEy~~~k~A~~~l~~D~----------ea~~li~~F~~~q~~~q~~q~~G~~~~~-e-~~~~l~ 74 (122)
T 2oeq_A 7 PLHALARQLEQAIRASEPFQQLKRAYEDVRRDE----------TAYRMFANVRDIQLRLHEKQMRGAAILP-D-EIEQAQ 74 (122)
T ss_dssp TTHHHHHHHHHHHHHSHHHHHHHHHHHHHHTCT----------THHHHHHHHHHHHHHHHHHHHTTCCCCH-H-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHHHHHHHcCCCCCH-H-HHHHHH
Confidence 46667778888888776666444 677777 344444444555555655677775 663 3 667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 102 IMEEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 102 ~le~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
.+..++. ..++|+.....=+.|+.+|.+-
T Consensus 75 ~l~~~l~-~n~~v~~~~~Ae~~l~~ll~~I 103 (122)
T 2oeq_A 75 KAMALAQ-QNEKLARLMALEQQMSITIAEV 103 (122)
T ss_dssp HHHHHHT-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 8877775 5677777777777777776553
No 22
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.13 E-value=1.2e+02 Score=22.62 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 98 KDIAIMEEELKAKKELIKKQERLVQRWRNDL 128 (142)
Q Consensus 98 keI~~le~EL~~KdELIkkh~~lI~~Wq~~L 128 (142)
++|++++.++.+-..+++..-..|..|-..-
T Consensus 23 r~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~ 53 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQMNEAIDAAKARASQK 53 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666655433
No 23
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=36.57 E-value=50 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQ--------ERLVQRWRNDLKGQ 131 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh--------~~lI~~Wq~~L~dq 131 (142)
-+++||..|+.||..=...++.. ...+..|-+.|++.
T Consensus 23 gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 23 GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 56888888888888777777554 34578999988864
No 24
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=35.66 E-value=55 Score=23.10 Aligned_cols=62 Identities=24% Similarity=0.248 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 61 IDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRN 126 (142)
Q Consensus 61 iDVErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~ 126 (142)
.+-=-.+.+|-.-||+....- ... .-..++.+++.+....++++.-.+.|..-+..+..|++
T Consensus 56 ~~eTl~TL~fa~rak~i~n~~---~~n-~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 56 EAETKSTLMFGQRAKTIKNTV---SVN-LELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE---CCC-BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCcccCCc---eec-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444457889999888764321 111 12234566666777777787777788888888888864
No 25
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=34.06 E-value=1e+02 Score=20.48 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=54.3
Q ss_pred hHhHHHHHHHHhhcCCCccchhh----cccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccC-CChHHHHHHHHH
Q 032351 27 NMISCVTALEAALLPCLPARELQ----AIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ-PTEVEMLRKDIA 101 (142)
Q Consensus 27 d~~~~V~~lEaAllpCLpareLq----aiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~-p~k~E~lkkeI~ 101 (142)
+|.....+|..++.-|=-...++ +|..|+ .+..-++.=+++|.=|-..|+... |+. + ..+++.
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~~~~~a~~~i~~d~----------ea~~l~~~f~~~q~~~~~~q~~G~~~~~-e-~~~~~~ 71 (113)
T 2iaz_A 4 NIYDSANELSRGLRGLPEYKAVKAAKDAIAADA----------EASKIFTDYLAFQEEIQKLAQTGQMPDA-S-FQAKME 71 (113)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHGGGTTTTCC----CCH-H-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHHHcCCCCCH-H-HHHHHH
Confidence 46666667777777665555444 333333 344444444444444444444443 443 3 578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 102 IMEEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 102 ~le~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
.+..++. ..++|......=+.+..+|.+-
T Consensus 72 ~l~~~i~-~~p~v~~y~~Ae~~l~~ll~~I 100 (113)
T 2iaz_A 72 GFGKQIQ-GNSLLSEFFTKQQQLAIYLSDI 100 (113)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 8888875 4677888887777777777653
No 26
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.29 E-value=92 Score=21.90 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 71 MEAAKKLQLYFISLQREDQPTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRW 124 (142)
Q Consensus 71 meaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~W 124 (142)
+|+|.. ..||-.-|++-+.---+-+-.+|..-+.||+.=.+-|.+|.+.|..-
T Consensus 25 rEaA~E-e~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 25 REQAEE-ERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455543 33554333333322222334455555555555555555555555443
No 27
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=29.77 E-value=1.7e+02 Score=22.73 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 032351 95 MLRKDIAIMEEELKAKK----ELIKKQERLVQRWRNDLKGQLDKHI 136 (142)
Q Consensus 95 ~lkkeI~~le~EL~~Kd----ELIkkh~~lI~~Wq~~L~dq~~kh~ 136 (142)
.|+.+|.+++.++..-+ ++.+++...+..|...|.....+..
T Consensus 230 ~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 275 (357)
T 3rrk_A 230 RMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYK 275 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888776543 3445556678999988887766543
No 28
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.38 E-value=1.1e+02 Score=25.55 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 92 EVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129 (142)
Q Consensus 92 k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~ 129 (142)
+-+.++.+|..++++.+..++-|++.+.-+..+...|.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666666666555443
No 29
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=29.24 E-value=67 Score=21.58 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=47.8
Q ss_pred hHhHHHHHHHHhhcCCCccchhh----cccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccC-CChHHHHHHHHH
Q 032351 27 NMISCVTALEAALLPCLPARELQ----AIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ-PTEVEMLRKDIA 101 (142)
Q Consensus 27 d~~~~V~~lEaAllpCLpareLq----aiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~-p~k~E~lkkeI~ 101 (142)
+|.....+|..++.-|=-...++ +|..|+ .+..-++.=+++|.=|-..|+... |+ +-..+++.
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~~~~~a~~~i~~d~----------ea~~l~~~f~~~q~~~~~~q~~G~~~~--~e~~~~~~ 71 (117)
T 2oee_A 4 NFYDVAYDLENALRGSEEFTRLKNLYDEVNADE----------SAKRMFENFRDVQLRLQQKQMAGEEIT--QEEVTQAQ 71 (117)
T ss_dssp CHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHSH----------HHHHHHHHHHHHCC--------------------CHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 46677778888887776555444 344444 444444444444444444455554 33 33677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 102 IMEEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 102 ~le~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
.+..++. ..++|......=+.+..+|.+-
T Consensus 72 ~l~~~i~-~~p~v~~y~~Ae~~l~~ll~~I 100 (117)
T 2oee_A 72 KTVALVQ-QHEKISQLMEAEQRMSMLIGEL 100 (117)
T ss_dssp HHHHHHH-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 8888875 4677777777777777776553
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.18 E-value=1.3e+02 Score=24.47 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~ 129 (142)
-+++++..+++++....+.++.+...|...+..+.
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 45667777777777777777777777777666555
No 31
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=28.90 E-value=1.4e+02 Score=24.87 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHH
Q 032351 61 IDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAI 102 (142)
Q Consensus 61 iDVErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~ 102 (142)
.|+-.|.|..-.+-.++|.||- .-|.||++...
T Consensus 91 ldihkhgreiarllekiqkyfQ---------~IEtlK~ql~n 123 (294)
T 3caz_A 91 LDIHKHGREIARLLEKIQKYRQ---------EIEEIKKEYKE 123 (294)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhh
Confidence 4667788888888889999994 33566665443
No 32
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.19 E-value=1.3e+02 Score=19.87 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 93 VEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 93 ~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
.|.||+|..-|+.||..-.-=|.|-+.--..-+.+|+-
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 57899999999999998887777766666665555543
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.00 E-value=79 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERL 120 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~l 120 (142)
.|+.||+.|+.|+..=+.++.+-+.+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68889999999999888877665433
No 34
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor, colony-stimulating factor, cytokine; NMR {Homo sapiens} SCOP: a.26.1.2
Probab=27.98 E-value=72 Score=23.71 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=12.6
Q ss_pred hhcCCCccchhhcccCCCCCcchh
Q 032351 38 ALLPCLPARELQAIDRSPHPSHQI 61 (142)
Q Consensus 38 AllpCLpareLqaiDrs~hpshqi 61 (142)
-|+||||.- .+-+..+++.|
T Consensus 67 ~l~pcLPta----t~~pt~~pI~I 86 (112)
T 1jli_A 67 NLLPCLPLA----TAAPTRHPIHI 86 (112)
T ss_dssp HHGGGSCCT----TSSCCSCCCCC
T ss_pred hccccCCcC----cCCCCCCCeec
Confidence 389999974 33344455666
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.83 E-value=1.3e+02 Score=19.73 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQL 132 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~ 132 (142)
.|.+.+..++.+++.-++=++.-.+.+..|++.|...+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888777777788888888887776654
No 36
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=27.70 E-value=1.6e+02 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHH
Q 032351 70 FMEAAKKLQLYFISLQREDQPTEVE 94 (142)
Q Consensus 70 FmeaAkqLq~yFi~lQr~~~p~k~E 94 (142)
+=+.-+.|..|+-.++....|...+
T Consensus 72 ~~~~~~el~~y~~~l~~qL~P~~~e 96 (307)
T 2l7b_A 72 MDETMKELKAYKSELEEQLTPVAEE 96 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHH
Confidence 4466678899999999999998543
No 37
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.57 E-value=1.6e+02 Score=20.72 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 94 EMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 94 E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
++|++.++.++++++.-..+++.-..+|..|++.+..
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888876643
No 38
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.54 E-value=89 Score=22.14 Aligned_cols=37 Identities=8% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 94 EMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 94 E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
++|.+-+..++++++.-.++++.-..+|..|++.+..
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888888888888888888888888877776654
No 39
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=26.93 E-value=1e+02 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 93 VEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 93 ~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
.+-+.+|+.+|+++++.-..++....++...|.++|.+.+.++-+
T Consensus 698 ~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~ 742 (767)
T 2xkj_E 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD 742 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 346777888888888888888888888899999999998888643
No 40
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=26.89 E-value=1.5e+02 Score=20.43 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 98 KDIAIMEEEL--------KAKKELIKKQERLVQRWRNDLKGQL 132 (142)
Q Consensus 98 keI~~le~EL--------~~KdELIkkh~~lI~~Wq~~L~dq~ 132 (142)
+-|+.++.-| ...+++-..+..+++.|++.++..+
T Consensus 35 ~~i~~fe~~L~s~~L~~~~~~~~~~~~y~~l~~~W~~~l~p~l 77 (125)
T 3ezh_A 35 PLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPAL 77 (125)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5567777666 2344455566778899998776655
No 41
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=26.73 E-value=1.4e+02 Score=27.57 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 90 PTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 90 p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
-...+-|.+|+.++++|++.-..++..-.++...+.++|.+...|+-+
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 683 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGD 683 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 334558999999999999999999999999999999999988887754
No 42
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.48 E-value=1.6e+02 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 90 PTEVEMLRKDIAIMEEELKAKKELIKKQERLVQ 122 (142)
Q Consensus 90 p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~ 122 (142)
..+-..||+||..|+++=+.=|++|+.-...|.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999988886555443
No 43
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.86 E-value=1.4e+02 Score=19.36 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
.|.+.+..++.+++.-++=++...+.+..|++.|..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777776654
No 44
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.75 E-value=1.1e+02 Score=18.74 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 032351 96 LRKDIAIMEEELKA 109 (142)
Q Consensus 96 lkkeI~~le~EL~~ 109 (142)
+.+||+..++|++.
T Consensus 14 ieeeiqaikeeiaa 27 (36)
T 1bb1_B 14 IEEEIQAIKEEIAA 27 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.74 E-value=1.3e+02 Score=18.82 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=14.5
Q ss_pred CChHH--HHHHHHHHHHHHHH
Q 032351 90 PTEVE--MLRKDIAIMEEELK 108 (142)
Q Consensus 90 p~k~E--~lkkeI~~le~EL~ 108 (142)
|+..+ .||.|+++|+.++.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYE 36 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHH
Confidence 56554 99999998887764
No 46
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.08 E-value=85 Score=18.32 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032351 94 EMLRKDIAIMEEELKA 109 (142)
Q Consensus 94 E~lkkeI~~le~EL~~ 109 (142)
--||.||+.||-|++.
T Consensus 10 arlkqeiaaleyeiaa 25 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3678888888888764
No 47
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=21.14 E-value=73 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCccchhhccc---CCCCCcchhhHHHHHHHHHHHHHHHHH
Q 032351 33 TALEAALLPCLPARELQAID---RSPHPSHQIDVERHARDFMEAAKKLQL 79 (142)
Q Consensus 33 ~~lEaAllpCLpareLqaiD---rs~hpshqiDVErhardFmeaAkqLq~ 79 (142)
+++-+.|+.|+|.|.-..+- -..-|--.-|||..-++++..||+|..
T Consensus 159 ~e~~e~il~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~~ 208 (216)
T 4fhr_B 159 DELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEE 208 (216)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999333221 112344567999999999999999863
No 48
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.86 E-value=4.1e+02 Score=22.93 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 62 DVERHARDFMEAAKKLQLYFISLQREDQ-PTEVEMLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 62 DVErhardFmeaAkqLq~yFi~lQr~~~-p~k~E~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
+|++.+...-+..+.|+.-+- +++-+ |...+.+-+.-..|-+|..+.+.+|.+|..-|+.-+..+...
T Consensus 49 ~isn~Ts~~~~~v~~ik~~~~--~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 49 QVENKTSEVKQLIKAIQLTYN--PDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHhhc--cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355555555566666665553 22222 334467777777788899999999999999998888776554
No 49
>2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica}
Probab=20.30 E-value=2.1e+02 Score=22.41 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=51.8
Q ss_pred CCCCchhHhHHHHHHHHh--hcCCCccchhhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHH
Q 032351 21 PSRDDMNMISCVTALEAA--LLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRK 98 (142)
Q Consensus 21 ~~~~~~d~~~~V~~lEaA--llpCLpareLqaiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkk 98 (142)
|..+|-|+....-|++|+ |-.|| .++ ++.+|.|-++|-+-... ==+-|+-+|-..--+.++ ||+
T Consensus 82 Pd~~d~d~yGvyPA~DAc~ALs~~l-----~~~-~~~~~~~a~~iS~~S~~-------TVa~fie~q~~~e~~~~e-l~~ 147 (200)
T 2q9r_A 82 PEPADFEAYGVYPAMDAVVAISTLL-----GAI-QGKIEEDIVNISKLSSS-------TVANYIEAISDVDLVDEA-LDD 147 (200)
T ss_dssp CCGGGCCSTTHHHHHHHHHHHHHHH-----HHH-HHTCHHHHHTHHHHHHH-------HHHHHHHHHHCCCCCHHH-HHH
T ss_pred CChhhcccccccHHHHHHHHHHHHH-----Hhc-ccchHHHHHHHHHHHHH-------HHHHHHHHhccCCCCHHH-HHh
Confidence 333444566655566553 33333 344 77766676777654432 223455556655555444 443
Q ss_pred H---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 032351 99 D---IAIMEEELKAKKELIKKQE-------RLVQRWRNDLK 129 (142)
Q Consensus 99 e---I~~le~EL~~KdELIkkh~-------~lI~~Wq~~L~ 129 (142)
. -..|++|+..-.+++..-+ ++|.+=++++.
T Consensus 148 ~i~~h~lm~~E~~~Q~~l~~~L~~~~~~~~e~ik~Lr~~~~ 188 (200)
T 2q9r_A 148 FVFAHEVMEEEKELQNSLLEIIEENPKITAELVKGLRKDII 188 (200)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHH
Confidence 3 5567888887777775443 45555555443
Done!