Query 032351
Match_columns 142
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 21:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032351.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032351hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qc7a_ a.118.14.1 (A:) FliG { 69.4 3.4 0.00025 26.9 4.5 43 33-79 36-85 (101)
2 d1ab4a_ e.11.1.1 (A:) DNA Gyra 49.4 16 0.0012 29.2 6.0 43 95-137 444-486 (493)
3 d2azeb1 e.63.1.2 (B:201-301) T 44.8 20 0.0015 23.6 5.1 31 93-123 3-33 (101)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 27.2 83 0.006 21.0 10.2 64 63-128 58-125 (129)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 26.1 72 0.0052 19.9 6.0 35 95-129 69-103 (107)
6 d1lkvx_ a.118.14.1 (X:) FliG { 25.9 11 0.00078 25.1 1.1 46 34-79 157-205 (213)
7 d2iaza1 a.281.1.2 (A:1-111) Hy 25.4 74 0.0054 19.8 5.6 92 27-130 3-98 (111)
8 d1yvia1 a.24.10.2 (A:2-143) Hi 22.4 52 0.0038 21.3 4.1 45 68-112 91-135 (142)
9 d1q79a2 d.218.1.3 (A:19-214) P 15.5 93 0.0068 21.9 4.4 28 104-131 37-64 (196)
10 d1mjea2 a.171.1.1 (A:2752-2887 14.9 67 0.0049 19.4 3.0 26 64-89 18-44 (49)
No 1
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=69.44 E-value=3.4 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCccc-------hhhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 032351 33 TALEAALLPCLPAR-------ELQAIDRSPHPSHQIDVERHARDFMEAAKKLQL 79 (142)
Q Consensus 33 ~~lEaAllpCLpar-------eLqaiDrs~hpshqiDVErhardFmeaAkqLq~ 79 (142)
+++-+.|+.|+|-| ++.... |--.-|||..-++++..||+|..
T Consensus 36 ~~~~~~il~nms~R~~~~l~ee~~~~g----~v~~~dve~Aq~~Iv~~~r~l~~ 85 (101)
T d1qc7a_ 36 DELKEKIFKNMSKRAAALLKDELEYMG----PVRLKDVEEAQQKIINIIRRLEE 85 (101)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999 343332 33467999999999999999974
No 2
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=49.45 E-value=16 Score=29.18 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLKGQLDKHIT 137 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~dq~~kh~~ 137 (142)
-|++|+..++.|++.=..+++.-.++...+.++|.+..+|+-+
T Consensus 444 kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~lk~kfg~ 486 (493)
T d1ab4a_ 444 KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 486 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5677777777777666666666666777778888888888754
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.79 E-value=20 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 93 VEMLRKDIAIMEEELKAKKELIKKQERLVQR 123 (142)
Q Consensus 93 ~E~lkkeI~~le~EL~~KdELIkkh~~lI~~ 123 (142)
-+.|++||..|+++=+.=|++|+.-...|..
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999876665544
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.25 E-value=83 Score=21.02 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 032351 63 VERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAIMEEELKAKK----ELIKKQERLVQRWRNDL 128 (142)
Q Consensus 63 VErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~le~EL~~Kd----ELIkkh~~lI~~Wq~~L 128 (142)
...-|++++..||+.....=+|=-.+ +-+|.=-+-|..|++|+.... +.+++-.+++..-++.|
T Consensus 58 ~~elA~dii~kakqId~LI~sLP~~~--~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i 125 (129)
T d1ykhb1 58 IDELSTDIILKTRQINKLIDSLPGVD--VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999987765432111 233444466777777765443 33444444444333333
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.10 E-value=72 Score=19.89 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 95 MLRKDIAIMEEELKAKKELIKKQERLVQRWRNDLK 129 (142)
Q Consensus 95 ~lkkeI~~le~EL~~KdELIkkh~~lI~~Wq~~L~ 129 (142)
.|++.+..++.++++=+.-++.-.+.+..|++.+.
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666554
No 6
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=25.86 E-value=11 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHhhcCCCccchhhcccCCCC---CcchhhHHHHHHHHHHHHHHHHH
Q 032351 34 ALEAALLPCLPARELQAIDRSPH---PSHQIDVERHARDFMEAAKKLQL 79 (142)
Q Consensus 34 ~lEaAllpCLpareLqaiDrs~h---pshqiDVErhardFmeaAkqLq~ 79 (142)
+.=+.|+.|+|-+.++.||.+-. +--.-|||..-++|++.||+|..
T Consensus 157 e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~~~i~~~~~~l~~ 205 (213)
T d1lkvx_ 157 ELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEE 205 (213)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45578999999997776553321 11234889999999999999853
No 7
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.44 E-value=74 Score=19.82 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=49.7
Q ss_pred hHhHHHHHHHHhhcCCCccchhh----cccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHH
Q 032351 27 NMISCVTALEAALLPCLPARELQ----AIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAI 102 (142)
Q Consensus 27 d~~~~V~~lEaAllpCLpareLq----aiDrs~hpshqiDVErhardFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~ 102 (142)
||.....+|..++.-|=....+. +|+.|+ .|..-+..=+++|.-|-..|....|..++ ..+++..
T Consensus 3 nI~d~A~eL~~~I~~s~ey~~~~~a~~~v~~D~----------ea~~l~~~f~~~q~~lq~~q~~G~~~~~e-~~~~l~~ 71 (111)
T d2iaza1 3 NIYDSANELSRGLRGLPEYKAVKAAKDAIAADA----------EASKIFTDYLAFQEEIQKLAQTGQMPDAS-FQAKMEG 71 (111)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHGGGTTTTCC----CCHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 46666777888887776666554 455555 23332322233333332233333343333 4466777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 103 MEEELKAKKELIKKQERLVQRWRNDLKG 130 (142)
Q Consensus 103 le~EL~~KdELIkkh~~lI~~Wq~~L~d 130 (142)
+..++. ..+.|+....-=+.+.++|.+
T Consensus 72 l~~~i~-~n~~i~~~~~Ae~~l~~ll~~ 98 (111)
T d2iaza1 72 FGKQIQ-GNSLLSEFFTKQQQLAIYLSD 98 (111)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 777765 456677776666666666654
No 8
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=22.43 E-value=52 Score=21.28 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 032351 68 RDFMEAAKKLQLYFISLQREDQPTEVEMLRKDIAIMEEELKAKKE 112 (142)
Q Consensus 68 rdFmeaAkqLq~yFi~lQr~~~p~k~E~lkkeI~~le~EL~~KdE 112 (142)
..+.+.|++|+.+...-....-+..-+.|+.+++.+..+|+.-=+
T Consensus 91 ~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~ 135 (142)
T d1yvia1 91 QKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQ 135 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888874211111133334666666666666654433
No 9
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.49 E-value=93 Score=21.93 Aligned_cols=28 Identities=29% Similarity=0.563 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032351 104 EEELKAKKELIKKQERLVQRWRNDLKGQ 131 (142)
Q Consensus 104 e~EL~~KdELIkkh~~lI~~Wq~~L~dq 131 (142)
++|.+++.+++.+-.++|+.|-...+.+
T Consensus 37 ~ee~~~R~~vl~~L~~lv~~~~~~~~~~ 64 (196)
T d1q79a2 37 EEELQRRILILGKLNNLVKEWIREISES 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455667778888899999998877654
No 10
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.92 E-value=67 Score=19.37 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=20.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhhccC
Q 032351 64 ERHARDFMEA-AKKLQLYFISLQREDQ 89 (142)
Q Consensus 64 ErhardFmea-AkqLq~yFi~lQr~~~ 89 (142)
|+.|++|-++ -|+|++.|--+|.+|.
T Consensus 18 ekEA~k~a~~qqKklE~LftKIq~eFe 44 (49)
T d1mjea2 18 EKEALRFAEAQQKKLEALFTKVHTEGL 44 (49)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888876 4889999998898875
Done!