BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032352
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L9U|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
           Typhimurium Dsbl
          Length = 201

 Score = 29.3 bits (64), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 42  LLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
           L D +V   L +W     V  I  V  Y+V G Y+I
Sbjct: 144 LKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKYLI 179


>pdb|3C7M|A Chain A, Crystal Structure Of Reduced Dsbl
 pdb|3C7M|B Chain B, Crystal Structure Of Reduced Dsbl
          Length = 195

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 42  LLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
           L + +V   L +W     V  I  V  Y+V G Y+I
Sbjct: 139 LKEPAVQETLEKWKASYDVAKIQGVPAYVVNGKYLI 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.144    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,548,029
Number of Sequences: 62578
Number of extensions: 131401
Number of successful extensions: 201
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)