BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032352
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 94/120 (78%), Gaps = 2/120 (1%)
Query: 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
+D SS S+SP A++R + S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22 DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLT 130
GFYIITY +GIYLLNL++ FLSPQ DPE S G +LPTR SDE+RPFVRRLPEFKF L+
Sbjct: 82 GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 84/120 (70%), Gaps = 3/120 (2%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQH LDK+ PH +RW+ L V IY +RVY +QGFY
Sbjct: 3 ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
II YGLGIYLLNLL+GFLSP +DPE SDGP+LPTRGSDEF+PF+RRLPEFKF + T
Sbjct: 63 IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQ+ LDK+ PH +RW+ L IY +RVY + GFY
Sbjct: 3 GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
II+YGLGIYLLNLL+GFLSP +DPE SDG TLPTRGSDEF+PF+RRLPEFKF + T
Sbjct: 63 IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMT 121
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS PH RWVV L + IY +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RW+V L + IY +RVYL+
Sbjct: 2 SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121
Query: 128 CLTRT 132
+ T
Sbjct: 122 WHSAT 126
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S + + T + +++W+ S+ +Q+ LD+S P+++ RW+V L IY RVY V G++
Sbjct: 7 SENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYF 66
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFCLTRT 132
+I+YGL Y+LNLL+GFLSP++DPE D +LP SDE++PFVRRLPEFKF T
Sbjct: 67 VISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAAT 125
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 10/100 (10%)
Query: 37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
R Y+H +D+++P+ +RW+ +++++ +R+ LV+G+YI+ Y L IYLLNL + FL+P+
Sbjct: 20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79
Query: 97 IDP---------EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
DP E +G LPT DEFRPF+RRLPEFKF
Sbjct: 80 FDPSVEQAMKDEEIEEG-VLPTSKDDEFRPFIRRLPEFKF 118
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 5/104 (4%)
Query: 29 SRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNL 88
SR+ +++ +YQ+ LD+ PH RWV+ L + +A R+ L+QGFYI+ Y +GIY LNL
Sbjct: 13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNL 72
Query: 89 LMGFLSPQIDP-----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
+ FL+P IDP + DGP LP++ +DEFRPF+RRLPEFKF
Sbjct: 73 FLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKF 116
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 14 DFSSSSSSTSPTAAISRWKYNVSRR-YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
D+ SS + ++ K N + YQH LDK PH RW V ++ ++ VR+ + +
Sbjct: 2 DYDSSDTMNGGSSNPLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAE 61
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
G+Y+I YGLG++LLN + FL+P+ D + + S+EFRPF+RRLPEFKF
Sbjct: 62 GWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKF 120
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
YQH LDK PH RW V ++ ++ VR+ + +G+Y+I YGLG++LLN + FL+P+ D
Sbjct: 28 YQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFD 87
Query: 99 ----PEYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
+ + S+EFRPF+RRLPEFKF
Sbjct: 88 MSLQQDEENNELEAGEKSEEFRPFIRRLPEFKF 120
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Query: 35 VSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG-FYIITYGLGIYLLNLLMGFL 93
++R+YQ+L++K++ + RW + +Y +RV L G +Y+ITY LGI+LL + FL
Sbjct: 22 IARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFL 81
Query: 94 SPQIDPEYSD--GPTLPT---RGSDEFRPFVRRLPEFKF 127
SP+ DPE + G +LPT R DE +PF+RRLPEF F
Sbjct: 82 SPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLF 120
>sp|Q4ZWM7|KUP_PSEU2 Probable potassium transport system protein kup OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=kup PE=3 SV=1
Length = 631
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 49 HVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLP 108
VLH VV L VV + RV Q F + +YG G Y + L GF+ D P +P
Sbjct: 508 QVLHEQVVLLTVVYEDSPRVPSAQRFEVESYGEGFYRVILHFGFI---------DEPDVP 558
Query: 109 TRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLV 141
+ + LPE F RT + V
Sbjct: 559 AALA------LCHLPELDFSPMRTTYFLSRETV 585
>sp|Q87Y19|KUP_PSESM Probable potassium transport system protein kup OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=kup PE=3 SV=1
Length = 631
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 49 HVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFL 93
VLH VV L VV RV Q F + +YG G Y + L GF+
Sbjct: 508 QVLHEQVVLLTVVYEDTPRVPSAQRFEVESYGEGFYRVILHFGFI 552
>sp|Q48FA9|KUP_PSE14 Probable potassium transport system protein kup OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6) GN=kup
PE=3 SV=1
Length = 631
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 49 HVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLP 108
VLH VV L VV + RV Q + +YG G Y + L GF+ D P +P
Sbjct: 508 QVLHEQVVLLTVVYEDSPRVPAAQRVEVESYGEGFYRVILHFGFI---------DEPDVP 558
Query: 109 TRGSDEFRPFVRRLPEFKFCLTRTIRMMRNSLV 141
+ + LPE F RT + V
Sbjct: 559 AALA------LCDLPELDFSPMRTTYFLSRETV 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,845,508
Number of Sequences: 539616
Number of extensions: 1980068
Number of successful extensions: 7089
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7052
Number of HSP's gapped (non-prelim): 34
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)