Query 032352
Match_columns 142
No_of_seqs 104 out of 240
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 57.8 2.7 9.3E-05 23.4 0.4 15 31-45 13-27 (27)
2 3arc_I Photosystem II reaction 15.8 89 0.003 18.7 2.0 18 77-94 7-25 (38)
3 3sya_A G protein-activated inw 8.7 1.1E+02 0.0038 25.6 1.1 27 31-62 26-52 (340)
4 2wjn_H Reaction center protein 8.3 1.5E+02 0.0052 24.2 1.7 29 52-80 19-47 (258)
5 3f31_A Spectrin alpha chain, b 7.4 1.3E+02 0.0046 21.0 0.9 35 12-46 1-35 (149)
6 3v2d_P 50S ribosomal protein L 6.4 1.3E+02 0.0044 22.5 0.4 13 116-128 56-68 (150)
7 2kxw_B Sodium channel protein 5.7 3.7E+02 0.013 14.5 1.9 16 32-47 9-24 (27)
8 4f4l_A ION transport protein; 5.7 1.4E+02 0.0046 20.5 0.1 19 82-100 82-100 (112)
9 3j01_A Preprotein translocase 5.6 2.8E+02 0.0096 23.8 2.1 37 73-111 308-350 (435)
10 2dyj_A Ribosome-binding factor 4.9 1.5E+02 0.0052 20.0 -0.0 9 119-127 79-87 (95)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=57.84 E-value=2.7 Score=23.39 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhc
Q 032352 31 WKYNVSRRYQHLLDK 45 (142)
Q Consensus 31 ~~~~~~~~yQ~~LDk 45 (142)
..+|++.+||..||+
T Consensus 13 tlsklkkkyqiildr 27 (27)
T 3owt_C 13 TLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHhhheeeecC
Confidence 367899999999995
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=15.79 E-value=89 Score=18.72 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=11.6
Q ss_pred ehhhHHHHHHHHHH-hhcC
Q 032352 77 ITYGLGIYLLNLLM-GFLS 94 (142)
Q Consensus 77 VtY~LgIylLnlfi-~FLt 94 (142)
+.|+.-|+...+|+ |||+
T Consensus 7 ~Vy~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eehhHHHHHHHHHHccccC
Confidence 34666667666664 7874
No 3
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=8.73 E-value=1.1e+02 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhccCccchhHHHHHHHHHH
Q 032352 31 WKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVS 62 (142)
Q Consensus 31 ~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~ 62 (142)
+.+-.+..|...+|. ..||...++++.
T Consensus 26 ~~~~~~D~f~tlv~l-----~Wr~~llif~~~ 52 (340)
T 3sya_A 26 TYRYLTDIFTTLVDL-----KWRFNLLIFVMV 52 (340)
T ss_dssp THHHHHTHHHHHHHS-----CHHHHHHHHHHH
T ss_pred chHHHHhHHHHheeC-----cHHHHHHHHHHH
Confidence 344556678888884 235554444443
No 4
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=8.28 E-value=1.5e+02 Score=24.23 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhhheeccEEEehhh
Q 032352 52 HRWVVCLAVVSIYAVRVYLVQGFYIITYG 80 (142)
Q Consensus 52 ~RW~~~~~L~~lf~lRv~~~~g~yiVtY~ 80 (142)
.=|++|++|+++|+-|==...||=+..=.
T Consensus 19 ~Fw~ffa~Li~~yl~~E~~REGyPl~~~~ 47 (258)
T 2wjn_H 19 AQWLVIWTVVLLYLRREDRREGYPLVEPL 47 (258)
T ss_dssp HHHHHHHHHHHHTHHHHTTSSSCSCBC--
T ss_pred HHHHHHHHHHHHHhcccccccCCccccCC
Confidence 45999999988899999999996565443
No 5
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=7.36 E-value=1.3e+02 Score=21.04 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=14.2
Q ss_pred cccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 032352 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKS 46 (142)
Q Consensus 12 ~~m~~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~ 46 (142)
|+|+++|..-......+......+...|+...+++
T Consensus 1 ~~~~~~~~~~~~~a~~I~~r~~~l~~r~~~L~~~a 35 (149)
T 3f31_A 1 GSMDPSGVKVLETAEDIQERRQQVLDRYHRFKELS 35 (149)
T ss_dssp ------------CTTHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666544333344456666667777777666654
No 6
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=6.44 E-value=1.3e+02 Score=22.55 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=10.6
Q ss_pred CCcccCCcchhhH
Q 032352 116 RPFVRRLPEFKFC 128 (142)
Q Consensus 116 rPFiRRLPEFkFW 128 (142)
-|+.||||.+-|-
T Consensus 56 ~Pl~rRlPK~GF~ 68 (150)
T 3v2d_P 56 STTLMRLPKRGMQ 68 (150)
T ss_dssp CCTTTTSCCCSCC
T ss_pred CccEEEcCccCcc
Confidence 5999999987664
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=5.72 E-value=3.7e+02 Score=14.54 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhccC
Q 032352 32 KYNVSRRYQHLLDKSV 47 (142)
Q Consensus 32 ~~~~~~~yQ~~LDk~t 47 (142)
...+++.|+.||++-.
T Consensus 9 A~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 9 AIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3468889999998754
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=5.70 E-value=1.4e+02 Score=20.52 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhcCCCCCCC
Q 032352 82 GIYLLNLLMGFLSPQIDPE 100 (142)
Q Consensus 82 gIylLnlfi~FLtPk~Dp~ 100 (142)
...+||+|+|.+.-.++..
T Consensus 82 ~fi~lNLfiaVi~~~f~~~ 100 (112)
T 4f4l_A 82 TFTVLNLFIGIIVDAMAIT 100 (112)
T ss_dssp HHHHHHHHTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4478999999987776543
No 9
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=5.61 E-value=2.8e+02 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=27.0
Q ss_pred cEEEehhhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCC
Q 032352 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRG 111 (142)
Q Consensus 73 g~yiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~LP~~~ 111 (142)
-.|++.|++-|....-|..++ .+||+. +.|...|+.+
T Consensus 308 ~~~~~~y~~lii~F~~fyt~i--~~np~diA~~lkk~G~~IpGiR 350 (435)
T 3j01_A 308 PLYVLLYASAIIFFCFFYTAL--VFNPRETADNLKKSGAFVPGIR 350 (435)
T ss_dssp GGGTHHHHHHHHHHHHHHHHH--SSCTTHHHHHTTSTTCSSSCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHcCCcCCCcC
Confidence 468889988888888888887 588875 3455555543
No 10
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=4.90 E-value=1.5e+02 Score=19.96 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=5.1
Q ss_pred ccCCcchhh
Q 032352 119 VRRLPEFKF 127 (142)
Q Consensus 119 iRRLPEFkF 127 (142)
+|+.||..|
T Consensus 79 lr~~P~L~F 87 (95)
T 2dyj_A 79 MRRLPRLEF 87 (95)
T ss_dssp CSSCCEEEE
T ss_pred CccCCeEEE
Confidence 555565555
Done!