Query 032352
Match_columns 142
No_of_seqs 104 out of 240
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 21:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032352.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032352hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hdma2 d.19.1.1 (A:13-93) Cla 19.8 15 0.0011 23.8 0.8 14 117-130 39-52 (81)
2 d1k8ia2 d.19.1.1 (A:11-92) Cla 17.8 16 0.0012 23.7 0.6 14 117-130 38-51 (82)
3 d2axti1 f.23.37.1 (I:1-35) Pho 13.3 36 0.0026 18.7 1.2 17 78-94 8-25 (35)
4 d1eysh2 f.23.10.1 (H:7-43) Pho 12.3 63 0.0046 17.8 2.1 22 52-74 12-33 (37)
5 d1xmea1 f.24.1.1 (A:14-562) Ba 8.9 56 0.0041 26.8 1.5 57 80-136 467-525 (549)
6 d2zjri1 c.12.1.1 (I:4-144) Rib 7.4 51 0.0037 22.0 0.4 13 116-128 51-63 (141)
7 d2gycj1 c.12.1.1 (J:4-143) Rib 6.9 56 0.0041 21.6 0.4 13 116-128 52-64 (140)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.5 1.6E+02 0.012 21.5 3.1 48 52-99 3-52 (248)
9 d2e7ga1 d.52.7.1 (A:86-201) Ri 6.0 42 0.0031 21.7 -0.6 11 119-129 88-98 (116)
10 d2dyja1 d.52.7.1 (A:4-94) Ribo 5.7 60 0.0043 20.1 -0.0 9 119-127 76-84 (91)
No 1
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=19.78 E-value=15 Score=23.80 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=11.1
Q ss_pred CcccCCcchhhHhH
Q 032352 117 PFVRRLPEFKFCLT 130 (142)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (142)
--+.|||||+=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34789999999953
No 2
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=17.80 E-value=16 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.3
Q ss_pred CcccCCcchhhHhH
Q 032352 117 PFVRRLPEFKFCLT 130 (142)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (142)
--+.|||||+=|-.
T Consensus 38 ~rvPrLPefa~Wa~ 51 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQ 51 (82)
T ss_dssp EEEESSTTTTHHHH
T ss_pred ccccCCCccccccc
Confidence 34789999999965
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.26 E-value=36 Score=18.66 Aligned_cols=17 Identities=35% Similarity=0.676 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHH-hhcC
Q 032352 78 TYGLGIYLLNLLM-GFLS 94 (142)
Q Consensus 78 tY~LgIylLnlfi-~FLt 94 (142)
.|..-|+...+|+ ||||
T Consensus 8 Vy~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHhhcc
Confidence 3555555555553 7885
No 4
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=12.25 E-value=63 Score=17.82 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhhheeccE
Q 032352 52 HRWVVCLAVVSIYAVRVYLVQGF 74 (142)
Q Consensus 52 ~RW~~~~~L~~lf~lRv~~~~g~ 74 (142)
.=|+++++|++ |+-|=-...||
T Consensus 12 ~Fw~FFagLi~-YL~rE~~REGy 33 (37)
T d1eysh2 12 AFWLFFFGLII-YLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHHH-HHHHHTTSSSC
T ss_pred HHHHHHHHHHH-HHHhcccccCC
Confidence 45776666554 66665555553
No 5
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=8.94 E-value=56 Score=26.85 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCCCCCCcccCCcchhhHhHhHHHHh
Q 032352 80 GLGIYLLNLLMGFLSPQIDPEYSDGP--TLPTRGSDEFRPFVRRLPEFKFCLTRTIRMM 136 (142)
Q Consensus 80 ~LgIylLnlfi~FLtPk~Dp~l~eg~--~LP~~~~dEFrPFiRRLPEFkFW~~~trat~ 136 (142)
+..+++.|++....+.+-.|+..+++ ......+.|=++=.+.||+.|+|.-..-+.+
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l~ 525 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILV 525 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHHHH
Confidence 44567888888888777655432221 1111222222234457999999987554443
No 6
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.36 E-value=51 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.0
Q ss_pred CCcccCCcchhhH
Q 032352 116 RPFVRRLPEFKFC 128 (142)
Q Consensus 116 rPFiRRLPEFkFW 128 (142)
-|+.||+|.+-|.
T Consensus 51 ~Pl~rrlPKrGf~ 63 (141)
T d2zjri1 51 SRLIARLPKRGFN 63 (141)
T ss_dssp SSSTTTSCCCCCC
T ss_pred ccceecCCccCCC
Confidence 3999999998874
No 7
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=6.90 E-value=56 Score=21.59 Aligned_cols=13 Identities=54% Similarity=1.060 Sum_probs=10.7
Q ss_pred CCcccCCcchhhH
Q 032352 116 RPFVRRLPEFKFC 128 (142)
Q Consensus 116 rPFiRRLPEFkFW 128 (142)
-|+.||+|.+-|-
T Consensus 52 ~Pl~rr~PK~Gf~ 64 (140)
T d2gycj1 52 MPLYRRLPKFGFT 64 (140)
T ss_dssp SSSSSSSSSCCCC
T ss_pred ccceeeCceeecc
Confidence 4999999987664
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.55 E-value=1.6e+02 Score=21.50 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=24.8
Q ss_pred hHHHHHHHHH--HHHHHhhheeccEEEehhhHHHHHHHHHHhhcCCCCCC
Q 032352 52 HRWVVCLAVV--SIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP 99 (142)
Q Consensus 52 ~RW~~~~~L~--~lf~lRv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp 99 (142)
.+|+..+++. .+|..=..+.+|.|...=.+.|-.+-...-|++|+.-|
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p 52 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYA 52 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCccc
Confidence 3565555444 33555556666765543333333333334477777665
No 9
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.03 E-value=42 Score=21.69 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=6.9
Q ss_pred ccCCcchhhHh
Q 032352 119 VRRLPEFKFCL 129 (142)
Q Consensus 119 iRRLPEFkFW~ 129 (142)
+|+.|+++|.+
T Consensus 88 lr~~P~L~F~~ 98 (116)
T d2e7ga1 88 LRNVPPIVFVQ 98 (116)
T ss_dssp CSCCCCEEEEE
T ss_pred ccccceEEEEe
Confidence 56666666654
No 10
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=5.67 E-value=60 Score=20.13 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=0.0
Q ss_pred ccCCcchhh
Q 032352 119 VRRLPEFKF 127 (142)
Q Consensus 119 iRRLPEFkF 127 (142)
+|+.|+++|
T Consensus 76 ~r~~P~L~F 84 (91)
T d2dyja1 76 MRRLPRLEF 84 (91)
T ss_dssp CSSCCEEEE
T ss_pred CccCCEEEE
Done!