Query 032355
Match_columns 142
No_of_seqs 187 out of 1985
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 13:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 2.4E-34 5.3E-39 207.8 14.9 134 1-141 72-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 1.7E-32 3.7E-37 202.9 15.6 141 1-141 106-246 (247)
3 PLN02476 O-methyltransferase 100.0 5E-32 1.1E-36 202.9 16.1 134 1-141 145-278 (278)
4 COG4122 Predicted O-methyltran 100.0 6.4E-32 1.4E-36 195.7 13.9 132 1-141 86-218 (219)
5 PLN02781 Probable caffeoyl-CoA 100.0 5.7E-31 1.2E-35 194.0 16.1 140 1-142 95-234 (234)
6 KOG1663 O-methyltransferase [S 100.0 3.8E-28 8.2E-33 175.1 13.8 135 1-141 100-237 (237)
7 COG1092 Predicted SAM-dependen 99.4 2.8E-12 6E-17 100.6 9.3 85 1-88 242-339 (393)
8 PRK15128 23S rRNA m(5)C1962 me 99.3 2.6E-11 5.6E-16 95.7 13.2 83 1-86 245-340 (396)
9 PRK04457 spermidine synthase; 99.3 3.3E-11 7.2E-16 90.4 12.5 78 1-84 92-176 (262)
10 PF10672 Methyltrans_SAM: S-ad 99.3 2.8E-11 6E-16 91.6 9.6 82 1-86 148-239 (286)
11 COG2242 CobL Precorrin-6B meth 99.3 1.1E-10 2.5E-15 82.6 11.5 79 1-88 60-138 (187)
12 PRK14901 16S rRNA methyltransf 99.3 9.6E-11 2.1E-15 93.6 12.5 120 1-141 279-431 (434)
13 PF12847 Methyltransf_18: Meth 99.3 2.1E-11 4.5E-16 79.5 6.8 78 1-85 27-111 (112)
14 PLN02366 spermidine synthase 99.3 1.9E-10 4E-15 88.1 13.0 79 1-84 117-205 (308)
15 PRK00811 spermidine synthase; 99.2 1.9E-10 4.1E-15 87.2 12.3 78 1-84 102-190 (283)
16 PF07279 DUF1442: Protein of u 99.2 1.1E-10 2.4E-15 84.2 10.3 114 1-140 71-186 (218)
17 PF03602 Cons_hypoth95: Conser 99.2 8.5E-11 1.8E-15 83.8 9.6 84 1-87 67-155 (183)
18 PF13659 Methyltransf_26: Meth 99.2 7.2E-11 1.6E-15 77.6 8.2 78 1-83 25-113 (117)
19 PRK00377 cbiT cobalt-precorrin 99.2 1.1E-10 2.3E-15 84.1 9.7 81 1-87 67-147 (198)
20 PLN02823 spermine synthase 99.2 2.1E-10 4.6E-15 88.7 11.8 78 1-84 129-219 (336)
21 PF13578 Methyltransf_24: Meth 99.2 3.4E-11 7.3E-16 78.2 5.8 80 1-86 25-106 (106)
22 PRK01581 speE spermidine synth 99.2 3.2E-10 6.8E-15 88.1 11.9 78 1-84 176-267 (374)
23 PRK14903 16S rRNA methyltransf 99.2 6.3E-10 1.4E-14 88.8 14.1 81 1-88 264-369 (431)
24 PRK14902 16S rRNA methyltransf 99.2 4.1E-10 8.9E-15 90.2 12.9 81 1-88 277-382 (444)
25 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.7E-10 3.6E-15 97.0 9.4 81 1-87 563-658 (702)
26 TIGR00417 speE spermidine synt 99.2 1.1E-09 2.3E-14 82.5 12.8 121 1-140 98-232 (270)
27 PLN03075 nicotianamine synthas 99.1 1.8E-10 3.8E-15 87.5 7.8 79 1-86 151-234 (296)
28 TIGR00446 nop2p NOL1/NOP2/sun 99.1 2.6E-09 5.6E-14 80.2 14.0 80 1-88 98-202 (264)
29 PRK10901 16S rRNA methyltransf 99.1 1.2E-09 2.7E-14 87.1 12.5 81 1-88 270-375 (427)
30 COG0742 N6-adenine-specific me 99.1 7.2E-10 1.6E-14 78.8 9.7 83 1-87 68-156 (187)
31 PRK14904 16S rRNA methyltransf 99.1 1.7E-09 3.6E-14 86.7 12.8 79 1-88 277-380 (445)
32 COG0421 SpeE Spermidine syntha 99.1 1.2E-09 2.6E-14 82.6 11.1 78 1-84 102-189 (282)
33 PF01564 Spermine_synth: Sperm 99.1 9.7E-10 2.1E-14 81.8 10.0 79 1-85 102-191 (246)
34 TIGR00138 gidB 16S rRNA methyl 99.1 8E-10 1.7E-14 78.6 8.2 74 1-84 68-141 (181)
35 TIGR02469 CbiT precorrin-6Y C5 99.1 9.8E-10 2.1E-14 72.5 7.9 77 1-84 45-121 (124)
36 TIGR00563 rsmB ribosomal RNA s 99.1 2.8E-09 6.1E-14 85.0 11.5 83 1-88 264-371 (426)
37 COG2519 GCD14 tRNA(1-methylade 99.0 8E-10 1.7E-14 81.6 7.6 74 1-84 121-194 (256)
38 TIGR00095 RNA methyltransferas 99.0 3.2E-09 7E-14 76.0 10.5 83 1-86 74-160 (189)
39 PRK08287 cobalt-precorrin-6Y C 99.0 8.3E-09 1.8E-13 73.5 12.3 77 1-87 57-133 (187)
40 TIGR03533 L3_gln_methyl protei 99.0 3.9E-09 8.5E-14 80.1 11.1 76 1-84 147-250 (284)
41 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.2E-09 7E-14 76.6 9.9 78 1-85 78-159 (199)
42 PRK00107 gidB 16S rRNA methylt 99.0 1.6E-09 3.6E-14 77.5 8.2 74 1-84 71-144 (187)
43 COG0144 Sun tRNA and rRNA cyto 99.0 6.4E-09 1.4E-13 81.2 11.9 82 2-88 185-291 (355)
44 PRK11933 yebU rRNA (cytosine-C 99.0 8.5E-09 1.8E-13 83.0 12.2 81 1-88 140-245 (470)
45 COG4123 Predicted O-methyltran 99.0 3.5E-09 7.5E-14 78.5 8.2 78 1-83 70-168 (248)
46 PRK11805 N5-glutamine S-adenos 99.0 3.5E-09 7.6E-14 81.2 8.3 76 1-84 159-262 (307)
47 PRK13944 protein-L-isoaspartat 98.9 2.8E-09 6E-14 77.2 7.1 74 1-84 99-172 (205)
48 PRK11036 putative S-adenosyl-L 98.9 8.5E-09 1.8E-13 76.9 9.1 77 1-83 68-147 (255)
49 PRK07402 precorrin-6B methylas 98.9 1.7E-08 3.6E-13 72.5 9.6 79 1-87 66-144 (196)
50 TIGR00080 pimt protein-L-isoas 98.9 5.3E-09 1.1E-13 76.2 7.0 73 1-84 104-176 (215)
51 COG2518 Pcm Protein-L-isoaspar 98.9 3.6E-09 7.8E-14 76.4 6.0 73 1-84 96-168 (209)
52 PF05175 MTS: Methyltransferas 98.9 5E-09 1.1E-13 73.7 6.5 74 1-83 57-138 (170)
53 PRK13942 protein-L-isoaspartat 98.9 6.2E-09 1.4E-13 75.8 6.8 73 1-84 103-175 (212)
54 PRK03612 spermidine synthase; 98.9 7.4E-09 1.6E-13 84.5 7.7 79 1-85 323-415 (521)
55 PF13847 Methyltransf_31: Meth 98.9 9.2E-09 2E-13 70.8 7.0 80 1-87 30-112 (152)
56 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 3.4E-07 7.5E-12 69.5 14.4 103 1-126 112-243 (283)
57 COG2226 UbiE Methylase involve 98.8 2.6E-08 5.7E-13 73.6 8.0 80 1-88 77-159 (238)
58 TIGR00536 hemK_fam HemK family 98.8 2.7E-08 5.9E-13 75.4 8.1 78 1-86 140-245 (284)
59 TIGR00091 tRNA (guanine-N(7)-) 98.8 3.2E-07 6.9E-12 65.8 12.9 79 1-84 42-131 (194)
60 PF08704 GCD14: tRNA methyltra 98.8 2.1E-08 4.5E-13 74.6 6.9 76 1-83 67-144 (247)
61 PRK00536 speE spermidine synth 98.8 7.2E-08 1.6E-12 72.3 9.6 73 1-85 96-171 (262)
62 TIGR00308 TRM1 tRNA(guanine-26 98.8 5.9E-08 1.3E-12 76.2 9.4 82 1-90 71-155 (374)
63 PF02353 CMAS: Mycolic acid cy 98.8 4.9E-08 1.1E-12 73.7 8.5 78 1-88 87-169 (273)
64 PRK14967 putative methyltransf 98.8 7.2E-08 1.6E-12 70.5 8.9 73 1-83 61-157 (223)
65 PF01135 PCMT: Protein-L-isoas 98.7 1.8E-08 4E-13 73.2 5.6 73 1-84 99-171 (209)
66 PRK00121 trmB tRNA (guanine-N( 98.7 1.3E-07 2.8E-12 68.3 9.8 79 1-84 66-155 (202)
67 PRK03522 rumB 23S rRNA methylu 98.7 1.2E-07 2.6E-12 72.8 9.9 76 1-83 197-272 (315)
68 TIGR00406 prmA ribosomal prote 98.7 6.4E-08 1.4E-12 73.5 8.1 78 1-87 184-261 (288)
69 PF01209 Ubie_methyltran: ubiE 98.7 4.9E-08 1.1E-12 72.1 6.7 77 1-85 74-153 (233)
70 PRK00312 pcm protein-L-isoaspa 98.7 5.9E-08 1.3E-12 70.4 6.6 73 1-84 102-174 (212)
71 TIGR01177 conserved hypothetic 98.7 8.4E-08 1.8E-12 74.1 7.5 76 1-84 206-293 (329)
72 TIGR02752 MenG_heptapren 2-hep 98.7 9.9E-08 2.1E-12 69.8 7.5 76 1-84 72-150 (231)
73 TIGR02085 meth_trns_rumB 23S r 98.7 2.4E-07 5.2E-12 72.8 10.0 76 1-84 257-333 (374)
74 PF09445 Methyltransf_15: RNA 98.7 4.5E-08 9.7E-13 68.4 5.3 58 1-62 23-80 (163)
75 PRK11873 arsM arsenite S-adeno 98.7 1.3E-07 2.9E-12 71.0 8.2 80 1-88 104-186 (272)
76 TIGR03704 PrmC_rel_meth putati 98.7 1.7E-07 3.6E-12 70.0 8.6 75 1-84 112-215 (251)
77 TIGR03534 RF_mod_PrmC protein- 98.7 1.9E-07 4E-12 69.0 8.7 75 1-84 113-216 (251)
78 TIGR00479 rumA 23S rRNA (uraci 98.7 3.1E-07 6.7E-12 73.4 10.5 78 1-83 316-394 (431)
79 PF13649 Methyltransf_25: Meth 98.6 7.3E-08 1.6E-12 61.9 5.5 70 1-79 26-101 (101)
80 PRK01544 bifunctional N5-gluta 98.6 1.8E-07 4E-12 76.2 8.8 76 1-84 164-268 (506)
81 PF02475 Met_10: Met-10+ like- 98.6 1.7E-07 3.6E-12 67.8 7.6 74 1-83 127-200 (200)
82 PRK04338 N(2),N(2)-dimethylgua 98.6 2.8E-07 6.2E-12 72.6 9.2 75 1-84 83-157 (382)
83 PLN02396 hexaprenyldihydroxybe 98.6 2.8E-07 6.1E-12 71.1 8.9 79 1-86 155-236 (322)
84 TIGR00537 hemK_rel_arch HemK-r 98.6 2.1E-07 4.5E-12 65.8 7.5 73 1-84 43-139 (179)
85 PRK14968 putative methyltransf 98.6 3.6E-07 7.7E-12 64.5 8.4 76 1-84 47-147 (188)
86 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.5E-07 5.5E-12 68.7 7.8 77 1-86 84-165 (247)
87 PLN02244 tocopherol O-methyltr 98.6 1.8E-07 4E-12 72.6 7.3 79 1-86 143-224 (340)
88 smart00828 PKS_MT Methyltransf 98.6 1.8E-07 3.9E-12 68.1 6.5 79 1-87 25-106 (224)
89 PRK15001 SAM-dependent 23S rib 98.6 3.3E-07 7.2E-12 72.1 8.3 76 1-84 254-339 (378)
90 PRK13168 rumA 23S rRNA m(5)U19 98.6 5.7E-07 1.2E-11 72.2 9.8 79 1-84 321-399 (443)
91 PLN02232 ubiquinone biosynthes 98.6 2.4E-07 5.2E-12 64.6 6.7 77 3-86 1-82 (160)
92 COG2230 Cfa Cyclopropane fatty 98.6 3.9E-07 8.6E-12 68.8 8.1 78 1-88 97-179 (283)
93 PF08241 Methyltransf_11: Meth 98.5 6.2E-08 1.3E-12 60.6 3.1 72 1-83 21-95 (95)
94 COG2520 Predicted methyltransf 98.5 5.7E-07 1.2E-11 69.6 8.7 78 2-87 214-291 (341)
95 PRK05031 tRNA (uracil-5-)-meth 98.5 8.5E-07 1.8E-11 69.5 9.8 79 1-83 230-318 (362)
96 TIGR00740 methyltransferase, p 98.5 8.1E-07 1.7E-11 65.5 8.9 78 1-87 81-163 (239)
97 PF05401 NodS: Nodulation prot 98.5 7.2E-07 1.6E-11 64.0 7.9 73 1-84 67-145 (201)
98 KOG1562 Spermidine synthase [A 98.5 2.7E-06 5.8E-11 64.3 11.3 119 2-139 148-281 (337)
99 PRK00517 prmA ribosomal protei 98.5 4.3E-06 9.3E-11 62.3 12.4 72 1-87 144-215 (250)
100 PRK09328 N5-glutamine S-adenos 98.5 7E-07 1.5E-11 66.9 7.8 75 1-84 134-237 (275)
101 PRK14966 unknown domain/N5-glu 98.5 6.5E-07 1.4E-11 71.0 7.8 76 1-84 277-380 (423)
102 COG2227 UbiG 2-polyprenyl-3-me 98.5 6.4E-07 1.4E-11 65.9 7.2 79 1-88 83-164 (243)
103 PRK13943 protein-L-isoaspartat 98.5 8.9E-07 1.9E-11 68.3 8.3 72 2-84 108-179 (322)
104 COG4262 Predicted spermidine s 98.5 1.7E-06 3.8E-11 67.2 9.4 79 1-85 315-407 (508)
105 PLN02233 ubiquinone biosynthes 98.5 7.5E-07 1.6E-11 66.8 7.3 79 1-86 100-183 (261)
106 PRK11207 tellurite resistance 98.4 7.6E-07 1.6E-11 64.0 7.0 74 1-83 54-132 (197)
107 PF05891 Methyltransf_PK: AdoM 98.4 2.8E-07 6.1E-12 66.9 4.4 88 1-96 80-174 (218)
108 COG2264 PrmA Ribosomal protein 98.4 5E-06 1.1E-10 63.4 11.0 79 1-87 187-265 (300)
109 COG2521 Predicted archaeal met 98.4 1.5E-07 3.4E-12 68.9 2.6 78 1-83 159-243 (287)
110 COG2890 HemK Methylase of poly 98.4 2.5E-06 5.4E-11 64.7 8.5 75 1-85 136-238 (280)
111 PF01170 UPF0020: Putative RNA 98.4 2.8E-06 6E-11 60.4 8.2 76 2-84 64-150 (179)
112 TIGR02143 trmA_only tRNA (urac 98.4 4.2E-06 9.1E-11 65.4 9.9 80 1-84 221-310 (353)
113 PRK14121 tRNA (guanine-N(7)-)- 98.4 5E-06 1.1E-10 65.6 10.0 77 1-83 148-233 (390)
114 TIGR00477 tehB tellurite resis 98.3 2.8E-06 6.1E-11 61.0 7.9 73 1-83 54-131 (195)
115 PRK09489 rsmC 16S ribosomal RN 98.3 2.3E-06 5.1E-11 66.6 7.8 72 1-83 222-301 (342)
116 COG4106 Tam Trans-aconitate me 98.3 1.2E-06 2.6E-11 63.7 5.5 70 1-84 56-128 (257)
117 cd02440 AdoMet_MTases S-adenos 98.3 6.1E-06 1.3E-10 51.3 8.2 77 1-84 23-103 (107)
118 KOG2730 Methylase [General fun 98.3 1.1E-06 2.4E-11 63.9 5.2 59 1-62 118-176 (263)
119 COG2265 TrmA SAM-dependent met 98.3 5.1E-06 1.1E-10 66.5 9.4 77 1-83 317-394 (432)
120 PRK12335 tellurite resistance 98.3 2.9E-06 6.2E-11 64.4 7.4 73 1-83 144-221 (287)
121 PRK01683 trans-aconitate 2-met 98.3 2.2E-06 4.8E-11 63.7 6.6 70 1-84 57-129 (258)
122 PRK00216 ubiE ubiquinone/menaq 98.3 2.5E-06 5.5E-11 62.2 6.7 78 1-85 78-158 (239)
123 PF06325 PrmA: Ribosomal prote 98.3 9.8E-07 2.1E-11 67.3 4.6 77 1-88 186-262 (295)
124 PTZ00098 phosphoethanolamine N 98.3 1.8E-06 3.8E-11 64.9 6.0 77 1-87 77-158 (263)
125 PRK14103 trans-aconitate 2-met 98.3 2.3E-06 5.1E-11 63.7 6.4 68 1-84 55-125 (255)
126 PF03059 NAS: Nicotianamine sy 98.3 4.9E-06 1.1E-10 62.8 7.7 78 2-86 149-231 (276)
127 PF06962 rRNA_methylase: Putat 98.2 4.5E-06 9.8E-11 56.9 6.7 109 1-127 1-121 (140)
128 PRK04266 fibrillarin; Provisio 98.2 4.8E-06 1E-10 61.3 7.3 75 1-84 98-175 (226)
129 PLN02336 phosphoethanolamine N 98.2 4.2E-06 9.1E-11 67.6 7.5 78 1-87 291-371 (475)
130 PF08242 Methyltransf_12: Meth 98.2 2.8E-07 6.1E-12 58.8 0.5 75 1-81 22-99 (99)
131 PRK05134 bifunctional 3-demeth 98.2 1.4E-05 3.1E-10 58.5 9.1 77 1-85 72-151 (233)
132 TIGR02716 C20_methyl_CrtF C-20 98.2 7E-06 1.5E-10 62.7 7.5 78 1-88 175-257 (306)
133 KOG1271 Methyltransferases [Ge 98.2 1.3E-05 2.8E-10 57.0 7.4 80 2-88 94-184 (227)
134 PRK08317 hypothetical protein; 98.1 2.6E-05 5.6E-10 56.6 9.1 79 1-88 46-127 (241)
135 TIGR01983 UbiG ubiquinone bios 98.1 2.1E-05 4.6E-10 57.1 8.6 78 1-85 69-149 (224)
136 PF02005 TRM: N2,N2-dimethylgu 98.1 1.5E-05 3.2E-10 62.9 8.1 76 1-83 76-152 (377)
137 KOG4300 Predicted methyltransf 98.1 1.7E-05 3.7E-10 57.4 7.4 76 1-83 101-180 (252)
138 smart00650 rADc Ribosomal RNA 98.1 1.6E-05 3.5E-10 55.7 7.2 85 1-95 37-123 (169)
139 KOG1540 Ubiquinone biosynthesi 98.1 2.3E-05 5E-10 58.3 7.9 76 1-83 132-212 (296)
140 TIGR01934 MenG_MenH_UbiE ubiqu 98.1 1.4E-05 3.1E-10 57.6 6.8 76 1-86 66-144 (223)
141 COG0220 Predicted S-adenosylme 98.1 5.7E-05 1.2E-09 55.7 9.8 77 2-83 75-162 (227)
142 PRK10742 putative methyltransf 98.1 1.7E-05 3.7E-10 59.0 7.0 56 1-62 112-175 (250)
143 PRK15068 tRNA mo(5)U34 methylt 98.1 2.9E-05 6.4E-10 60.0 8.5 82 1-90 147-231 (322)
144 PRK11705 cyclopropane fatty ac 98.0 2E-05 4.4E-10 62.3 7.4 73 1-87 192-269 (383)
145 PF02390 Methyltransf_4: Putat 98.0 4.2E-05 9.2E-10 55.1 8.5 77 2-83 44-131 (195)
146 TIGR00452 methyltransferase, p 98.0 3.3E-05 7.2E-10 59.5 8.3 82 1-90 146-230 (314)
147 PRK06922 hypothetical protein; 98.0 2.6E-05 5.7E-10 65.0 7.9 79 1-86 444-538 (677)
148 PLN02672 methionine S-methyltr 98.0 3.6E-05 7.9E-10 67.5 9.0 54 1-60 144-212 (1082)
149 PHA03412 putative methyltransf 98.0 2.6E-05 5.7E-10 57.7 6.8 73 1-87 78-165 (241)
150 KOG1122 tRNA and rRNA cytosine 98.0 2.7E-05 5.8E-10 61.5 7.0 81 2-88 269-374 (460)
151 PF05185 PRMT5: PRMT5 arginine 98.0 2.5E-05 5.3E-10 62.9 6.9 79 1-87 216-299 (448)
152 PRK10258 biotin biosynthesis p 98.0 1.8E-05 3.8E-10 58.7 5.7 72 1-85 66-140 (251)
153 COG2813 RsmC 16S RNA G1207 met 98.0 3.2E-05 7E-10 58.8 7.1 72 1-82 184-263 (300)
154 PLN02336 phosphoethanolamine N 98.0 3.9E-05 8.4E-10 62.0 8.1 80 1-88 61-145 (475)
155 TIGR03840 TMPT_Se_Te thiopurin 98.0 1.9E-05 4.2E-10 57.6 5.6 78 1-87 58-154 (213)
156 TIGR02072 BioC biotin biosynth 98.0 2.1E-05 4.4E-10 57.3 5.7 73 1-85 60-135 (240)
157 smart00138 MeTrc Methyltransfe 97.9 1E-05 2.3E-10 60.8 4.0 77 1-84 134-241 (264)
158 PLN02490 MPBQ/MSBQ methyltrans 97.9 3.6E-05 7.8E-10 59.9 7.0 73 1-84 139-214 (340)
159 PRK13255 thiopurine S-methyltr 97.9 2.4E-05 5.2E-10 57.3 5.7 74 1-83 61-153 (218)
160 PHA03411 putative methyltransf 97.9 0.00011 2.4E-09 55.5 8.9 47 1-61 90-136 (279)
161 COG0116 Predicted N6-adenine-s 97.9 0.00016 3.5E-09 56.8 9.9 75 2-83 257-342 (381)
162 KOG2904 Predicted methyltransf 97.9 4.3E-05 9.2E-10 57.5 6.2 80 1-86 174-286 (328)
163 PF03848 TehB: Tellurite resis 97.9 6.5E-05 1.4E-09 54.0 6.8 76 1-86 54-134 (192)
164 TIGR02021 BchM-ChlM magnesium 97.9 0.0001 2.2E-09 53.6 7.9 74 1-84 79-157 (219)
165 PF05711 TylF: Macrocin-O-meth 97.9 1.8E-05 3.8E-10 59.0 3.9 97 11-132 141-239 (248)
166 KOG1270 Methyltransferases [Co 97.8 3.8E-05 8.2E-10 57.3 5.1 77 1-87 113-197 (282)
167 TIGR03438 probable methyltrans 97.8 0.00017 3.6E-09 55.2 8.7 83 1-85 90-177 (301)
168 COG2263 Predicted RNA methylas 97.8 0.00014 3E-09 51.9 7.4 62 1-74 70-136 (198)
169 PRK07580 Mg-protoporphyrin IX 97.7 0.00023 4.9E-09 51.8 8.3 72 1-82 87-163 (230)
170 PTZ00146 fibrillarin; Provisio 97.7 0.00016 3.5E-09 55.1 7.6 77 1-84 159-236 (293)
171 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00017 3.7E-09 61.1 8.5 56 1-61 258-313 (702)
172 PRK11727 23S rRNA mA1618 methy 97.7 0.00017 3.8E-09 55.7 6.8 58 1-61 140-199 (321)
173 COG1041 Predicted DNA modifica 97.7 0.00013 2.8E-09 56.6 6.0 75 1-83 221-308 (347)
174 PRK11088 rrmA 23S rRNA methylt 97.6 0.0001 2.2E-09 55.5 5.4 65 2-83 115-179 (272)
175 PF04989 CmcI: Cephalosporin h 97.6 6.8E-05 1.5E-09 54.3 4.0 120 1-126 62-185 (206)
176 PF01861 DUF43: Protein of unk 97.6 0.00072 1.6E-08 50.1 9.1 72 1-79 69-142 (243)
177 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.0002 4.4E-09 56.0 6.5 71 1-72 220-300 (352)
178 PF02527 GidB: rRNA small subu 97.6 0.00056 1.2E-08 48.9 8.1 73 1-83 74-146 (184)
179 KOG2899 Predicted methyltransf 97.6 0.00023 4.9E-09 52.8 6.0 81 2-88 85-212 (288)
180 PF05430 Methyltransf_30: S-ad 97.5 0.00029 6.3E-09 47.2 5.6 52 27-84 32-89 (124)
181 PF13489 Methyltransf_23: Meth 97.4 0.00046 1E-08 47.0 5.7 69 1-87 46-117 (161)
182 PF05724 TPMT: Thiopurine S-me 97.4 0.0012 2.7E-08 48.3 7.9 79 1-86 61-156 (218)
183 PF04816 DUF633: Family of unk 97.4 0.0013 2.9E-08 47.7 7.9 76 1-83 23-99 (205)
184 KOG2915 tRNA(1-methyladenosine 97.4 0.00056 1.2E-08 51.5 6.0 74 1-81 132-205 (314)
185 PRK11524 putative methyltransf 97.4 0.00049 1.1E-08 52.2 5.9 53 26-83 7-78 (284)
186 PF12147 Methyltransf_20: Puta 97.4 0.0011 2.4E-08 50.4 7.6 86 1-90 163-254 (311)
187 PRK13699 putative methylase; P 97.4 0.00039 8.5E-09 51.2 5.1 51 28-83 2-70 (227)
188 COG4076 Predicted RNA methylas 97.3 0.00016 3.5E-09 51.8 2.4 78 1-88 56-138 (252)
189 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0015 3.2E-08 51.1 7.8 75 1-83 78-152 (380)
190 TIGR03587 Pse_Me-ase pseudamin 97.3 0.00059 1.3E-08 49.4 5.2 70 1-86 69-143 (204)
191 KOG1661 Protein-L-isoaspartate 97.3 0.00042 9.1E-09 50.3 4.3 72 3-84 112-192 (237)
192 KOG2352 Predicted spermine/spe 97.3 0.00061 1.3E-08 54.9 5.6 87 1-88 321-419 (482)
193 PLN02585 magnesium protoporphy 97.3 0.0021 4.5E-08 49.7 8.2 72 1-83 168-248 (315)
194 PRK13256 thiopurine S-methyltr 97.3 0.00058 1.2E-08 50.3 4.9 82 1-86 67-164 (226)
195 PRK11188 rrmJ 23S rRNA methylt 97.2 0.0014 3E-08 47.7 6.4 71 1-84 78-164 (209)
196 TIGR00438 rrmJ cell division p 97.2 0.0015 3.3E-08 46.4 6.2 71 1-84 59-145 (188)
197 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0013 2.7E-08 50.4 5.7 54 1-60 46-99 (296)
198 PF10294 Methyltransf_16: Puta 97.1 0.0017 3.6E-08 45.8 5.9 79 1-84 71-155 (173)
199 PTZ00338 dimethyladenosine tra 97.1 0.0039 8.4E-08 47.7 8.0 52 1-61 60-111 (294)
200 KOG1253 tRNA methyltransferase 97.0 0.0014 2.9E-08 53.0 5.4 79 1-83 136-214 (525)
201 KOG1709 Guanidinoacetate methy 97.0 0.0031 6.6E-08 46.2 6.5 82 3-91 128-212 (271)
202 PRK01544 bifunctional N5-gluta 97.0 0.0071 1.5E-07 49.6 9.4 76 2-83 374-460 (506)
203 PF01739 CheR: CheR methyltran 96.8 0.00086 1.9E-08 48.4 2.6 77 1-84 66-174 (196)
204 PRK06202 hypothetical protein; 96.8 0.0022 4.8E-08 47.0 4.6 74 1-87 90-168 (232)
205 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0035 7.7E-08 47.9 5.8 76 1-81 79-179 (311)
206 PRK10611 chemotaxis methyltran 96.7 0.00061 1.3E-08 51.9 1.0 78 1-84 149-261 (287)
207 COG0357 GidB Predicted S-adeno 96.7 0.0067 1.4E-07 44.4 6.1 73 1-83 93-166 (215)
208 COG3963 Phospholipid N-methylt 96.6 0.015 3.3E-07 41.0 7.5 75 1-83 75-154 (194)
209 KOG3420 Predicted RNA methylas 96.6 0.0027 5.8E-08 43.8 3.5 67 1-76 73-144 (185)
210 PRK05785 hypothetical protein; 96.6 0.0056 1.2E-07 45.0 5.5 63 1-79 76-141 (226)
211 PF08003 Methyltransf_9: Prote 96.5 0.015 3.3E-07 44.6 7.6 83 1-91 140-225 (315)
212 PRK01747 mnmC bifunctional tRN 96.5 0.019 4.1E-07 48.5 8.9 51 27-83 148-204 (662)
213 PF05971 Methyltransf_10: Prot 96.5 0.0033 7.1E-08 48.2 4.0 58 1-61 128-187 (299)
214 KOG2187 tRNA uracil-5-methyltr 96.5 0.0071 1.5E-07 49.2 5.9 77 1-80 407-485 (534)
215 KOG1500 Protein arginine N-met 96.5 0.0058 1.3E-07 47.7 5.0 74 1-83 202-280 (517)
216 PF04445 SAM_MT: Putative SAM- 96.5 0.0016 3.6E-08 48.1 2.0 54 1-60 99-160 (234)
217 KOG1499 Protein arginine N-met 96.5 0.0048 1E-07 47.9 4.5 80 1-88 85-170 (346)
218 TIGR02081 metW methionine bios 96.4 0.0052 1.1E-07 43.8 4.4 63 2-77 39-104 (194)
219 PF04378 RsmJ: Ribosomal RNA s 96.3 0.011 2.3E-07 44.2 5.3 76 2-83 82-162 (245)
220 PF07021 MetW: Methionine bios 96.2 0.016 3.5E-07 41.6 5.7 71 2-86 39-112 (193)
221 KOG2361 Predicted methyltransf 96.2 0.0082 1.8E-07 44.6 4.1 81 1-87 99-185 (264)
222 KOG3010 Methyltransferase [Gen 96.1 0.0024 5.2E-08 47.4 1.2 76 1-83 57-135 (261)
223 PF00891 Methyltransf_2: O-met 96.1 0.0084 1.8E-07 44.1 3.9 70 1-88 126-202 (241)
224 TIGR00006 S-adenosyl-methyltra 96.1 0.035 7.6E-07 42.7 7.3 56 1-60 46-101 (305)
225 COG1352 CheR Methylase of chem 95.8 0.015 3.3E-07 43.9 4.2 77 1-84 131-240 (268)
226 PRK14896 ksgA 16S ribosomal RN 95.8 0.055 1.2E-06 40.5 7.2 49 1-61 53-101 (258)
227 COG2384 Predicted SAM-dependen 95.7 0.077 1.7E-06 38.9 7.5 69 1-76 42-111 (226)
228 TIGR02987 met_A_Alw26 type II 95.6 0.034 7.4E-07 45.7 6.0 57 2-61 66-122 (524)
229 COG2961 ComJ Protein involved 95.6 0.44 9.6E-06 35.8 11.0 96 1-120 112-212 (279)
230 COG4976 Predicted methyltransf 95.5 0.0057 1.2E-07 45.3 1.0 73 1-84 149-224 (287)
231 KOG2198 tRNA cytosine-5-methyl 95.3 0.064 1.4E-06 42.2 6.3 85 2-88 186-299 (375)
232 COG0030 KsgA Dimethyladenosine 95.2 0.18 4E-06 37.9 8.2 61 1-72 54-116 (259)
233 COG0275 Predicted S-adenosylme 95.2 0.13 2.8E-06 39.5 7.4 56 1-60 50-105 (314)
234 KOG3191 Predicted N6-DNA-methy 95.1 0.2 4.4E-06 35.9 7.8 73 2-84 71-167 (209)
235 KOG1541 Predicted protein carb 95.1 0.029 6.3E-07 41.4 3.6 71 2-84 75-159 (270)
236 TIGR00755 ksgA dimethyladenosi 95.1 0.12 2.5E-06 38.5 7.0 60 1-72 53-115 (253)
237 PF03291 Pox_MCEL: mRNA cappin 95.0 0.059 1.3E-06 42.0 5.4 81 1-84 87-185 (331)
238 PF00107 ADH_zinc_N: Zinc-bind 94.6 0.15 3.3E-06 33.4 5.9 76 1-87 16-91 (130)
239 KOG0820 Ribosomal RNA adenine 94.6 0.059 1.3E-06 40.9 4.2 51 1-60 82-132 (315)
240 PF06859 Bin3: Bicoid-interact 94.4 0.019 4.1E-07 37.5 1.1 41 51-91 1-50 (110)
241 PRK00274 ksgA 16S ribosomal RN 94.3 0.13 2.9E-06 38.7 5.7 61 1-72 66-126 (272)
242 PF11899 DUF3419: Protein of u 94.2 0.19 4.1E-06 39.9 6.5 60 23-88 273-337 (380)
243 PF01795 Methyltransf_5: MraW 94.2 0.05 1.1E-06 42.0 3.1 56 1-59 46-101 (310)
244 PF08123 DOT1: Histone methyla 94.1 0.35 7.6E-06 35.1 7.3 80 2-87 69-160 (205)
245 PF05219 DREV: DREV methyltran 93.9 1.7 3.6E-05 32.9 10.6 108 1-127 118-236 (265)
246 PF07942 N2227: N2227-like pro 93.7 0.047 1E-06 41.3 2.1 58 26-88 144-205 (270)
247 PF01269 Fibrillarin: Fibrilla 93.6 0.45 9.8E-06 35.1 7.0 75 2-83 101-176 (229)
248 PF00072 Response_reg: Respons 93.4 1.2 2.5E-05 27.9 9.9 74 2-83 1-76 (112)
249 KOG0822 Protein kinase inhibit 93.2 0.065 1.4E-06 44.1 2.4 75 1-83 397-476 (649)
250 PF08351 DUF1726: Domain of un 93.2 0.41 8.9E-06 30.3 5.6 75 49-125 9-89 (92)
251 COG3510 CmcI Cephalosporin hyd 93.1 1.2 2.6E-05 32.3 8.4 82 1-92 99-187 (237)
252 KOG1975 mRNA cap methyltransfe 92.9 0.5 1.1E-05 36.9 6.5 81 1-83 142-235 (389)
253 PF14740 DUF4471: Domain of un 92.6 0.5 1.1E-05 36.2 6.3 55 27-87 201-256 (289)
254 KOG1269 SAM-dependent methyltr 92.2 0.18 3.9E-06 39.8 3.5 79 2-87 136-217 (364)
255 COG0286 HsdM Type I restrictio 92.0 1.4 3E-05 36.2 8.6 88 2-91 217-335 (489)
256 COG1568 Predicted methyltransf 92.0 0.49 1.1E-05 36.2 5.4 55 1-61 177-231 (354)
257 KOG0781 Signal recognition par 91.5 1.7 3.6E-05 35.8 8.3 59 49-122 464-527 (587)
258 KOG3178 Hydroxyindole-O-methyl 91.4 0.3 6.4E-06 38.2 3.9 73 2-89 202-280 (342)
259 COG1063 Tdh Threonine dehydrog 91.0 0.88 1.9E-05 35.6 6.3 76 1-87 195-271 (350)
260 PF05148 Methyltransf_8: Hypot 90.8 0.65 1.4E-05 34.0 4.9 61 49-128 120-182 (219)
261 COG1064 AdhP Zn-dependent alco 90.8 1.4 3.1E-05 34.5 7.1 70 1-87 192-261 (339)
262 PF06080 DUF938: Protein of un 90.5 0.76 1.6E-05 33.4 5.1 84 5-88 55-144 (204)
263 KOG2671 Putative RNA methylase 90.4 0.41 8.9E-06 37.7 3.8 53 2-60 233-293 (421)
264 TIGR03439 methyl_EasF probable 90.1 5.2 0.00011 31.1 9.7 80 2-83 107-195 (319)
265 COG0500 SmtA SAM-dependent met 89.7 2.2 4.8E-05 27.1 6.6 80 2-88 75-158 (257)
266 TIGR01444 fkbM_fam methyltrans 89.3 0.87 1.9E-05 30.3 4.4 36 1-37 24-59 (143)
267 cd00315 Cyt_C5_DNA_methylase C 89.1 1.1 2.4E-05 33.9 5.3 72 2-87 25-113 (275)
268 KOG2912 Predicted DNA methylas 88.8 0.43 9.4E-06 37.2 2.8 58 2-60 129-187 (419)
269 COG5379 BtaA S-adenosylmethion 88.6 2.1 4.6E-05 33.2 6.4 72 5-87 292-368 (414)
270 COG1889 NOP1 Fibrillarin-like 88.5 3.8 8.3E-05 30.0 7.3 76 1-83 102-178 (231)
271 KOG2798 Putative trehalase [Ca 88.5 0.58 1.3E-05 36.4 3.4 55 28-87 240-298 (369)
272 PF03141 Methyltransf_29: Puta 87.8 0.89 1.9E-05 37.3 4.2 38 49-86 425-468 (506)
273 PRK04148 hypothetical protein; 87.4 2.2 4.7E-05 29.0 5.3 61 1-75 41-101 (134)
274 KOG1227 Putative methyltransfe 86.9 0.6 1.3E-05 36.1 2.6 70 1-79 220-290 (351)
275 KOG0024 Sorbitol dehydrogenase 86.7 4.1 8.9E-05 31.9 7.0 75 1-83 196-271 (354)
276 PF02153 PDH: Prephenate dehyd 86.5 1.6 3.5E-05 32.6 4.8 65 1-84 13-77 (258)
277 PF01234 NNMT_PNMT_TEMT: NNMT/ 85.9 0.82 1.8E-05 34.4 2.9 37 51-87 158-201 (256)
278 PRK10840 transcriptional regul 85.7 10 0.00023 26.8 9.7 67 1-73 5-76 (216)
279 COG0293 FtsJ 23S rRNA methylas 85.4 5.6 0.00012 29.0 6.9 60 26-86 85-160 (205)
280 PRK09880 L-idonate 5-dehydroge 85.4 4 8.7E-05 31.4 6.6 70 2-85 197-266 (343)
281 COG3129 Predicted SAM-dependen 85.4 1.4 3.1E-05 32.9 3.8 62 2-66 105-168 (292)
282 PF02254 TrkA_N: TrkA-N domain 84.9 7.8 0.00017 24.6 7.1 70 2-84 24-95 (116)
283 cd08281 liver_ADH_like1 Zinc-d 84.2 6 0.00013 30.8 7.2 71 2-84 219-289 (371)
284 PF01555 N6_N4_Mtase: DNA meth 83.1 1.6 3.4E-05 31.1 3.3 19 66-84 37-55 (231)
285 TIGR03451 mycoS_dep_FDH mycoth 82.7 7.1 0.00015 30.2 7.0 72 2-84 204-275 (358)
286 COG0745 OmpR Response regulato 82.2 9 0.0002 28.2 7.1 65 1-74 2-68 (229)
287 PTZ00357 methyltransferase; Pr 81.8 2.5 5.5E-05 36.5 4.4 80 1-80 730-830 (1072)
288 PF10354 DUF2431: Domain of un 81.5 3.3 7.2E-05 29.0 4.3 78 3-84 27-124 (166)
289 KOG0780 Signal recognition par 81.4 25 0.00054 28.5 9.4 75 8-87 141-224 (483)
290 PRK10309 galactitol-1-phosphat 81.0 11 0.00023 28.9 7.4 73 2-85 188-260 (347)
291 PF10237 N6-adenineMlase: Prob 80.9 2.2 4.7E-05 29.9 3.2 34 49-83 84-121 (162)
292 PF01728 FtsJ: FtsJ-like methy 80.9 2.7 5.9E-05 29.3 3.8 35 50-84 90-138 (181)
293 cd08293 PTGR2 Prostaglandin re 80.9 8.9 0.00019 29.2 7.0 70 2-83 183-252 (345)
294 KOG3201 Uncharacterized conser 80.6 18 0.00039 25.7 8.2 76 2-82 57-137 (201)
295 KOG0519 Sensory transduction h 79.9 5.7 0.00012 34.7 6.0 59 1-66 668-726 (786)
296 COG1189 Predicted rRNA methyla 79.5 7.5 0.00016 29.1 5.7 54 25-83 122-176 (245)
297 PF00398 RrnaAD: Ribosomal RNA 79.1 1.7 3.8E-05 32.5 2.4 88 1-95 54-144 (262)
298 PRK13435 response regulator; P 78.3 14 0.00031 24.1 6.6 54 1-61 7-60 (145)
299 KOG0022 Alcohol dehydrogenase, 77.0 19 0.00042 28.3 7.4 118 1-131 219-353 (375)
300 PRK11697 putative two-componen 76.8 17 0.00038 25.9 7.1 56 1-62 3-58 (238)
301 cd08294 leukotriene_B4_DH_like 76.7 17 0.00037 27.3 7.3 69 2-83 171-239 (329)
302 KOG2940 Predicted methyltransf 76.3 2.6 5.7E-05 31.6 2.6 74 1-84 97-173 (325)
303 KOG1099 SAM-dependent methyltr 76.2 6.8 0.00015 29.4 4.7 53 27-84 90-162 (294)
304 cd08238 sorbose_phosphate_red 76.0 12 0.00027 29.6 6.6 74 1-83 205-286 (410)
305 PF04672 Methyltransf_19: S-ad 75.5 16 0.00034 27.8 6.6 87 1-88 97-193 (267)
306 PLN03154 putative allyl alcoho 75.4 18 0.00039 28.0 7.3 71 2-84 186-257 (348)
307 PLN02740 Alcohol dehydrogenase 75.1 20 0.00042 28.1 7.4 70 2-83 226-298 (381)
308 PRK15411 rcsA colanic acid cap 74.8 28 0.00062 24.9 10.2 75 2-82 3-81 (207)
309 PRK11760 putative 23S rRNA C24 74.6 3.5 7.6E-05 32.5 3.0 62 1-78 235-296 (357)
310 PRK09958 DNA-binding transcrip 74.4 25 0.00054 24.1 9.9 66 1-73 2-69 (204)
311 PF00145 DNA_methylase: C-5 cy 73.6 15 0.00032 27.7 6.3 71 2-87 25-112 (335)
312 TIGR02825 B4_12hDH leukotriene 73.5 30 0.00064 26.2 7.9 70 2-84 166-236 (325)
313 KOG3115 Methyltransferase-like 73.5 14 0.00031 27.2 5.6 78 2-83 87-181 (249)
314 PRK10529 DNA-binding transcrip 73.4 25 0.00054 24.6 7.1 64 1-72 3-68 (225)
315 PF03807 F420_oxidored: NADP o 72.8 11 0.00024 23.1 4.6 60 6-83 33-92 (96)
316 cd08286 FDH_like_ADH2 formalde 72.3 33 0.00071 26.1 8.0 71 2-83 194-264 (345)
317 PLN02827 Alcohol dehydrogenase 72.3 24 0.00052 27.7 7.3 70 2-83 221-293 (378)
318 COG0604 Qor NADPH:quinone redu 71.9 34 0.00073 26.5 7.9 59 18-84 182-240 (326)
319 PRK10955 DNA-binding transcrip 71.8 29 0.00062 24.3 7.1 64 1-73 3-68 (232)
320 COG0686 Ald Alanine dehydrogen 71.4 35 0.00076 26.9 7.6 69 1-82 193-265 (371)
321 KOG3045 Predicted RNA methylas 70.9 9.8 0.00021 29.1 4.5 39 49-87 226-266 (325)
322 PF03721 UDPG_MGDP_dh_N: UDP-g 70.6 35 0.00076 24.2 10.5 79 1-90 25-125 (185)
323 cd08295 double_bond_reductase_ 70.5 33 0.00072 26.1 7.6 70 2-83 179-249 (338)
324 PF13679 Methyltransf_32: Meth 70.4 6.8 0.00015 26.3 3.4 37 1-37 55-93 (141)
325 TIGR03201 dearomat_had 6-hydro 70.3 25 0.00054 27.0 7.0 75 1-85 192-272 (349)
326 COG4121 Uncharacterized conser 70.2 5.7 0.00012 29.9 3.2 56 26-84 146-207 (252)
327 PRK11466 hybrid sensory histid 70.2 69 0.0015 28.0 10.3 66 1-73 683-750 (914)
328 cd08239 THR_DH_like L-threonin 70.1 27 0.00059 26.5 7.1 70 2-83 191-260 (339)
329 PRK14084 two-component respons 70.0 38 0.00083 24.3 9.3 76 1-83 2-79 (246)
330 KOG2456 Aldehyde dehydrogenase 69.8 20 0.00044 29.0 6.2 66 6-77 141-206 (477)
331 KOG1596 Fibrillarin and relate 69.8 12 0.00026 28.4 4.7 76 2-84 184-260 (317)
332 PRK10360 DNA-binding transcrip 69.5 32 0.0007 23.4 7.8 55 1-61 3-57 (196)
333 smart00448 REC cheY-homologous 69.5 12 0.00025 18.2 6.6 52 1-60 2-53 (55)
334 cd08285 NADP_ADH NADP(H)-depen 68.9 37 0.00081 25.9 7.6 73 2-85 194-266 (351)
335 cd08237 ribitol-5-phosphate_DH 68.2 30 0.00065 26.6 7.0 65 1-85 191-256 (341)
336 PRK05808 3-hydroxybutyryl-CoA 68.2 48 0.001 24.8 8.6 71 1-83 28-116 (282)
337 PRK10161 transcriptional regul 67.7 40 0.00086 23.7 7.2 64 1-72 4-69 (229)
338 COG1062 AdhC Zn-dependent alco 67.7 38 0.00083 26.8 7.3 71 1-83 212-283 (366)
339 PRK05703 flhF flagellar biosyn 67.3 66 0.0014 26.0 10.0 52 2-60 254-308 (424)
340 TIGR02956 TMAO_torS TMAO reduc 67.3 27 0.00059 30.7 7.2 55 1-63 704-758 (968)
341 cd08300 alcohol_DH_class_III c 67.2 39 0.00084 26.2 7.5 71 2-84 214-287 (368)
342 PRK15347 two component system 66.8 34 0.00074 29.8 7.7 64 1-72 692-757 (921)
343 COG2204 AtoC Response regulato 66.8 72 0.0016 26.3 9.5 73 1-82 6-80 (464)
344 PF02951 GSH-S_N: Prokaryotic 66.5 4.1 8.9E-05 27.0 1.6 35 50-85 77-114 (119)
345 PF02558 ApbA: Ketopantoate re 66.5 10 0.00022 25.4 3.6 35 49-83 65-99 (151)
346 cd08254 hydroxyacyl_CoA_DH 6-h 66.5 37 0.0008 25.5 7.1 71 2-84 192-262 (338)
347 COG1004 Ugd Predicted UDP-gluc 66.3 69 0.0015 25.9 9.8 77 1-88 25-123 (414)
348 TIGR00478 tly hemolysin TlyA f 66.3 11 0.00023 27.9 3.9 67 1-83 100-169 (228)
349 cd08233 butanediol_DH_like (2R 66.3 44 0.00096 25.5 7.6 72 2-84 200-271 (351)
350 CHL00148 orf27 Ycf27; Reviewed 66.2 43 0.00094 23.5 7.4 65 1-73 8-74 (240)
351 cd05125 Mth938_2P1-like Mth938 66.1 29 0.00062 22.8 5.6 63 49-132 52-114 (114)
352 COG3897 Predicted methyltransf 66.1 9.4 0.0002 27.9 3.4 68 2-82 105-175 (218)
353 PRK13856 two-component respons 66.0 44 0.00095 23.9 7.2 54 1-62 3-56 (241)
354 TIGR03366 HpnZ_proposed putati 65.7 48 0.001 24.6 7.5 72 2-86 148-219 (280)
355 PRK11091 aerobic respiration c 65.6 32 0.0007 29.6 7.3 64 1-72 527-592 (779)
356 TIGR02875 spore_0_A sporulatio 65.1 41 0.00089 24.6 7.0 66 1-72 4-71 (262)
357 PHA01634 hypothetical protein 65.1 9.5 0.00021 26.0 3.1 49 1-60 53-101 (156)
358 COG0270 Dcm Site-specific DNA 64.6 24 0.00053 27.3 5.8 73 2-87 28-118 (328)
359 TIGR00571 dam DNA adenine meth 64.5 22 0.00047 26.7 5.4 29 26-61 154-182 (266)
360 COG4565 CitB Response regulato 63.9 57 0.0012 24.1 9.8 77 1-83 2-80 (224)
361 PF07015 VirC1: VirC1 protein; 63.7 24 0.00051 26.3 5.3 58 1-59 32-91 (231)
362 TIGR02154 PhoB phosphate regul 63.7 46 0.001 23.0 7.3 54 1-62 4-57 (226)
363 PRK09191 two-component respons 63.5 54 0.0012 23.7 9.7 65 2-73 140-207 (261)
364 KOG2078 tRNA modification enzy 63.1 8.6 0.00019 31.3 3.1 40 1-40 273-313 (495)
365 COG0677 WecC UDP-N-acetyl-D-ma 62.7 83 0.0018 25.6 10.3 82 1-90 34-133 (436)
366 COG2130 Putative NADP-dependen 62.7 48 0.001 26.0 6.9 75 1-87 177-251 (340)
367 PRK09422 ethanol-active dehydr 62.5 63 0.0014 24.4 7.7 69 2-83 190-259 (338)
368 cd02037 MRP-like MRP (Multiple 62.5 39 0.00084 23.1 6.1 33 50-83 66-98 (169)
369 PRK10046 dpiA two-component re 62.0 56 0.0012 23.4 10.2 76 1-83 6-84 (225)
370 PLN02353 probable UDP-glucose 61.9 55 0.0012 26.9 7.6 17 1-17 28-44 (473)
371 PRK10841 hybrid sensory kinase 61.3 81 0.0018 28.2 9.0 64 2-73 804-869 (924)
372 PRK09935 transcriptional regul 61.3 50 0.0011 22.6 10.0 67 1-73 5-73 (210)
373 PRK09468 ompR osmolarity respo 61.3 56 0.0012 23.1 10.0 65 1-73 7-73 (239)
374 cd08283 FDH_like_1 Glutathione 60.9 47 0.001 26.0 6.9 74 2-84 212-305 (386)
375 COG3947 Response regulator con 60.7 78 0.0017 24.8 7.6 73 1-81 2-76 (361)
376 PRK11064 wecC UDP-N-acetyl-D-m 60.7 87 0.0019 25.2 10.2 80 1-88 28-122 (415)
377 cd08291 ETR_like_1 2-enoyl thi 60.6 58 0.0013 24.6 7.2 71 2-84 171-241 (324)
378 cd05565 PTS_IIB_lactose PTS_II 60.6 41 0.0009 21.4 6.4 60 10-81 15-74 (99)
379 PRK12652 putative monovalent c 60.2 21 0.00047 28.2 4.8 46 11-60 63-122 (357)
380 PRK07502 cyclohexadienyl dehyd 60.2 40 0.00086 25.7 6.3 64 2-82 34-97 (307)
381 COG0784 CheY FOG: CheY-like re 60.1 41 0.00088 21.2 7.1 66 1-74 7-76 (130)
382 PRK10816 DNA-binding transcrip 59.8 57 0.0012 22.7 10.0 54 1-62 2-55 (223)
383 cd05278 FDH_like Formaldehyde 59.7 67 0.0014 24.3 7.5 71 2-83 195-265 (347)
384 PRK11107 hybrid sensory histid 59.4 48 0.001 28.9 7.3 54 2-63 670-723 (919)
385 TIGR00745 apbA_panE 2-dehydrop 58.7 20 0.00044 26.6 4.4 34 50-83 58-91 (293)
386 COG0157 NadC Nicotinate-nucleo 58.7 71 0.0015 24.5 7.1 53 22-83 185-237 (280)
387 PHA00684 hypothetical protein 58.4 16 0.00035 24.4 3.3 30 107-136 58-87 (128)
388 PF07091 FmrO: Ribosomal RNA m 58.1 25 0.00054 26.5 4.6 46 2-57 132-177 (251)
389 PF09243 Rsm22: Mitochondrial 58.0 31 0.00067 26.0 5.3 23 1-23 60-82 (274)
390 PRK10904 DNA adenine methylase 57.9 45 0.00098 25.1 6.1 29 26-61 156-184 (271)
391 PRK10701 DNA-binding transcrip 57.8 65 0.0014 22.8 9.8 74 1-83 3-78 (240)
392 PRK03659 glutathione-regulated 57.4 65 0.0014 27.3 7.5 70 1-83 425-496 (601)
393 COG3706 PleD Response regulato 57.3 58 0.0013 26.6 6.9 58 1-66 134-191 (435)
394 PRK10365 transcriptional regul 57.0 97 0.0021 24.6 9.4 73 1-82 7-81 (441)
395 PRK10669 putative cation:proto 56.9 77 0.0017 26.4 7.8 71 1-84 442-514 (558)
396 COG5459 Predicted rRNA methyla 56.8 11 0.00024 30.1 2.7 35 49-83 183-223 (484)
397 KOG1447 GTP-specific succinyl- 56.5 45 0.00096 25.7 5.7 46 6-61 263-308 (412)
398 TIGR00675 dcm DNA-methyltransf 56.3 49 0.0011 25.5 6.2 71 2-87 23-110 (315)
399 TIGR02819 fdhA_non_GSH formald 56.2 92 0.002 24.7 7.9 76 2-86 213-300 (393)
400 PF07669 Eco57I: Eco57I restri 56.0 37 0.00081 21.6 4.7 29 51-81 2-47 (106)
401 PRK09836 DNA-binding transcrip 55.9 68 0.0015 22.4 10.4 65 1-73 2-68 (227)
402 cd08301 alcohol_DH_plants Plan 55.8 75 0.0016 24.5 7.3 71 2-84 215-288 (369)
403 PRK11173 two-component respons 55.5 72 0.0016 22.6 9.9 64 1-72 5-70 (237)
404 PRK11517 transcriptional regul 54.6 70 0.0015 22.2 7.6 64 1-72 2-67 (223)
405 TIGR02818 adh_III_F_hyde S-(hy 54.4 98 0.0021 24.0 7.7 71 2-84 213-286 (368)
406 PRK07417 arogenate dehydrogena 54.3 45 0.00097 25.0 5.6 64 2-84 26-89 (279)
407 PRK09424 pntA NAD(P) transhydr 54.0 62 0.0013 27.0 6.7 78 1-86 190-286 (509)
408 PRK03562 glutathione-regulated 53.8 80 0.0017 26.9 7.5 70 1-83 425-496 (621)
409 PRK13837 two-component VirA-li 53.7 1.5E+02 0.0034 25.9 10.3 66 2-73 700-765 (828)
410 PRK14620 NAD(P)H-dependent gly 53.6 52 0.0011 25.2 6.0 34 50-83 70-104 (326)
411 TIGR03029 EpsG chain length de 53.3 27 0.00058 26.0 4.2 14 49-62 210-223 (274)
412 KOG1197 Predicted quinone oxid 53.2 83 0.0018 24.2 6.6 70 2-83 174-243 (336)
413 cd08166 MPP_Cdc1_like_1 unchar 53.0 41 0.0009 24.3 4.9 55 67-130 33-87 (195)
414 PF08532 Glyco_hydro_42M: Beta 52.9 51 0.0011 23.6 5.5 53 18-84 38-90 (207)
415 PRK15001 SAM-dependent 23S rib 52.8 51 0.0011 26.3 5.8 59 15-84 80-141 (378)
416 PRK06274 indolepyruvate oxidor 52.8 28 0.00061 24.6 4.1 33 50-87 66-98 (197)
417 cd08265 Zn_ADH3 Alcohol dehydr 52.5 95 0.0021 24.2 7.4 72 2-83 231-305 (384)
418 PF01558 POR: Pyruvate ferredo 52.2 22 0.00049 24.5 3.5 34 50-88 56-89 (173)
419 PRK10336 DNA-binding transcrip 52.1 76 0.0016 21.8 9.6 65 1-73 2-68 (219)
420 PF14258 DUF4350: Domain of un 52.1 26 0.00056 20.3 3.2 64 9-83 4-68 (70)
421 PF13709 DUF4159: Domain of un 51.8 55 0.0012 23.7 5.5 36 51-86 53-90 (207)
422 cd03143 A4_beta-galactosidase_ 51.4 22 0.00047 24.0 3.2 35 50-84 52-86 (154)
423 KOG1501 Arginine N-methyltrans 51.2 20 0.00044 29.5 3.4 37 1-37 91-127 (636)
424 PRK12921 2-dehydropantoate 2-r 51.2 41 0.0009 25.2 5.0 34 50-83 67-100 (305)
425 PF03269 DUF268: Caenorhabditi 51.2 25 0.00053 24.9 3.4 35 49-83 61-109 (177)
426 PRK10923 glnG nitrogen regulat 51.2 1.3E+02 0.0028 24.2 10.1 65 1-73 5-71 (469)
427 TIGR03787 marine_sort_RR prote 51.1 82 0.0018 21.9 9.9 65 1-73 2-70 (227)
428 PRK10643 DNA-binding transcrip 51.0 79 0.0017 21.7 9.6 64 1-72 2-67 (222)
429 cd08263 Zn_ADH10 Alcohol dehyd 51.0 85 0.0018 24.2 6.8 71 2-83 215-285 (367)
430 KOG2352 Predicted spermine/spe 50.9 43 0.00094 27.7 5.2 76 2-86 74-162 (482)
431 cd01492 Aos1_SUMO Ubiquitin ac 50.9 58 0.0013 23.3 5.5 47 8-60 73-119 (197)
432 PF07090 DUF1355: Protein of u 50.8 18 0.00038 25.7 2.7 34 50-83 66-106 (177)
433 PF01210 NAD_Gly3P_dh_N: NAD-d 50.3 47 0.001 22.6 4.8 71 2-83 25-101 (157)
434 PF13602 ADH_zinc_N_2: Zinc-bi 50.1 6.7 0.00014 25.3 0.5 34 49-84 17-50 (127)
435 PRK15057 UDP-glucose 6-dehydro 49.8 1.3E+02 0.0028 24.0 7.8 17 1-17 24-40 (388)
436 PRK10710 DNA-binding transcrip 49.5 89 0.0019 21.9 7.2 64 1-72 12-77 (240)
437 TIGR02822 adh_fam_2 zinc-bindi 49.3 90 0.0019 23.8 6.7 32 50-85 222-254 (329)
438 PF12692 Methyltransf_17: S-ad 49.3 79 0.0017 22.1 5.6 59 27-88 72-137 (160)
439 PRK10766 DNA-binding transcrip 49.1 87 0.0019 21.7 9.7 65 1-73 4-70 (221)
440 PRK12555 chemotaxis-specific m 48.5 1.2E+02 0.0027 23.2 9.9 76 1-83 2-79 (337)
441 cd08230 glucose_DH Glucose deh 48.2 89 0.0019 24.0 6.6 33 50-85 237-269 (355)
442 PF11599 AviRa: RRNA methyltra 48.0 22 0.00047 26.5 2.8 21 2-22 80-100 (246)
443 COG1444 Predicted P-loop ATPas 47.6 31 0.00067 30.2 4.1 35 49-83 90-124 (758)
444 KOG4058 Uncharacterized conser 47.4 56 0.0012 22.9 4.6 72 3-83 99-170 (199)
445 PLN02716 nicotinate-nucleotide 47.3 1.3E+02 0.0029 23.3 8.4 69 10-78 188-262 (308)
446 COG0552 FtsY Signal recognitio 47.1 1.4E+02 0.0031 23.6 8.4 89 9-119 180-285 (340)
447 PRK06853 indolepyruvate oxidor 46.6 38 0.00082 24.1 4.0 32 50-86 67-98 (197)
448 PF02086 MethyltransfD12: D12 46.5 31 0.00067 25.2 3.6 28 28-61 160-187 (260)
449 TIGR03499 FlhF flagellar biosy 46.4 37 0.00081 25.7 4.1 9 51-59 272-280 (282)
450 TIGR00692 tdh L-threonine 3-de 46.2 1.3E+02 0.0028 22.8 7.6 71 2-83 189-259 (340)
451 PF01408 GFO_IDH_MocA: Oxidore 46.1 74 0.0016 20.0 6.5 62 4-84 31-92 (120)
452 KOG2356 Transcriptional activa 46.0 22 0.00048 27.6 2.7 35 25-62 161-195 (366)
453 cd05188 MDR Medium chain reduc 45.6 1.1E+02 0.0024 21.8 7.2 70 2-83 161-230 (271)
454 PRK14974 cell division protein 45.6 1.5E+02 0.0032 23.3 9.8 37 50-86 221-262 (336)
455 TIGR00497 hsdM type I restrict 45.4 1.7E+02 0.0036 24.2 8.0 54 2-60 248-302 (501)
456 COG4098 comFA Superfamily II D 45.4 86 0.0019 25.2 5.9 36 49-84 200-239 (441)
457 PRK11083 DNA-binding response 45.1 1E+02 0.0022 21.3 10.0 65 1-73 5-71 (228)
458 PRK08507 prephenate dehydrogen 45.1 1E+02 0.0022 22.9 6.3 30 52-82 59-88 (275)
459 cd05564 PTS_IIB_chitobiose_lic 45.0 76 0.0016 19.8 6.8 56 10-77 14-69 (96)
460 cd05279 Zn_ADH1 Liver alcohol 45.0 1.4E+02 0.0031 23.0 7.4 70 2-83 211-283 (365)
461 PRK00094 gpsA NAD(P)H-dependen 44.9 92 0.002 23.5 6.1 34 50-83 70-103 (325)
462 PRK09959 hybrid sensory histid 44.7 2.5E+02 0.0054 25.6 9.6 64 2-73 961-1026(1197)
463 COG4798 Predicted methyltransf 44.6 25 0.00055 25.8 2.7 27 65-91 146-173 (238)
464 PRK06249 2-dehydropantoate 2-r 44.4 36 0.00078 26.0 3.8 34 50-83 71-104 (313)
465 TIGR01425 SRP54_euk signal rec 44.3 1.8E+02 0.0038 23.8 9.7 34 50-83 181-219 (429)
466 PRK08293 3-hydroxybutyryl-CoA 44.1 1.4E+02 0.003 22.5 7.3 72 1-83 28-118 (287)
467 TIGR00518 alaDH alanine dehydr 44.0 1.2E+02 0.0025 24.0 6.7 70 2-83 193-265 (370)
468 TIGR00959 ffh signal recogniti 43.8 1.8E+02 0.0038 23.7 9.6 37 49-85 180-221 (428)
469 PRK09260 3-hydroxybutyryl-CoA 43.7 1.2E+02 0.0025 22.8 6.5 73 1-84 26-116 (288)
470 PTZ00142 6-phosphogluconate de 43.5 1.4E+02 0.003 24.6 7.2 18 1-18 26-43 (470)
471 cd08164 MPP_Ted1 Saccharomyces 43.3 72 0.0016 23.0 4.9 56 51-120 22-78 (193)
472 COG0541 Ffh Signal recognition 43.1 1.9E+02 0.0041 23.8 9.8 97 2-118 133-239 (451)
473 PF03575 Peptidase_S51: Peptid 42.7 17 0.00037 24.7 1.6 64 12-82 2-73 (154)
474 COG0009 SUA5 Putative translat 42.5 1.2E+02 0.0027 22.1 6.1 31 65-95 13-43 (211)
475 TIGR00640 acid_CoA_mut_C methy 42.3 63 0.0014 21.6 4.3 67 6-79 13-81 (132)
476 PRK06035 3-hydroxyacyl-CoA deh 41.8 1.5E+02 0.0032 22.3 6.9 70 1-82 28-118 (291)
477 cd08278 benzyl_alcohol_DH Benz 41.8 1.6E+02 0.0035 22.7 7.1 70 2-83 214-283 (365)
478 PRK06731 flhF flagellar biosyn 41.7 1.5E+02 0.0033 22.4 7.2 32 50-81 153-189 (270)
479 PRK13849 putative crown gall t 41.7 1.4E+02 0.003 21.9 6.6 12 50-61 82-93 (231)
480 cd01488 Uba3_RUB Ubiquitin act 41.7 96 0.0021 23.8 5.7 49 6-60 49-97 (291)
481 COG0275 Predicted S-adenosylme 41.2 19 0.00042 27.9 1.8 22 62-83 221-242 (314)
482 TIGR01007 eps_fam capsular exo 41.1 59 0.0013 22.9 4.3 13 49-61 125-137 (204)
483 COG4750 LicC CTP:phosphocholin 41.0 1.4E+02 0.0031 21.9 6.4 70 11-89 33-107 (231)
484 PRK11361 acetoacetate metaboli 40.3 1.9E+02 0.004 23.1 7.4 54 1-62 6-59 (457)
485 PRK06130 3-hydroxybutyryl-CoA 40.0 1.6E+02 0.0035 22.2 7.5 72 1-83 29-113 (311)
486 PF11965 DUF3479: Domain of un 39.8 1.3E+02 0.0029 21.1 6.8 60 11-78 71-130 (164)
487 COG3972 Superfamily I DNA and 39.7 77 0.0017 26.7 5.0 49 31-83 279-327 (660)
488 PF13614 AAA_31: AAA domain; P 39.5 26 0.00056 23.3 2.1 13 50-62 116-128 (157)
489 PRK15115 response regulator Gl 39.4 2E+02 0.0042 22.9 10.1 54 1-62 7-60 (444)
490 TIGR01818 ntrC nitrogen regula 39.3 2E+02 0.0043 23.0 9.2 64 2-73 1-66 (463)
491 TIGR01387 cztR_silR_copR heavy 39.3 1.2E+02 0.0027 20.6 10.0 62 3-72 2-65 (218)
492 PRK09483 response regulator; P 39.1 1.3E+02 0.0028 20.7 9.3 67 1-73 3-71 (217)
493 PRK08441 oorC 2-oxoglutarate-a 39.0 60 0.0013 22.9 4.0 32 50-86 67-98 (183)
494 cd08296 CAD_like Cinnamyl alco 38.6 1.6E+02 0.0034 22.3 6.5 68 2-83 190-257 (333)
495 PF05050 Methyltransf_21: Meth 38.5 38 0.00082 22.5 2.8 22 1-22 25-48 (167)
496 KOG0066 eIF2-interacting prote 38.5 1.6E+02 0.0035 24.7 6.7 68 12-84 681-758 (807)
497 KOG1367 3-phosphoglycerate kin 38.5 1.5E+02 0.0034 23.4 6.3 69 52-124 90-158 (416)
498 PRK11889 flhF flagellar biosyn 38.4 2.2E+02 0.0048 23.3 10.2 33 51-83 320-357 (436)
499 cd01484 E1-2_like Ubiquitin ac 38.1 1.4E+02 0.003 22.1 5.9 49 6-60 49-100 (234)
500 PF00899 ThiF: ThiF family; I 37.7 1.2E+02 0.0025 19.9 6.1 49 6-60 52-101 (135)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=2.4e-34 Score=207.80 Aligned_cols=134 Identities=42% Similarity=0.759 Sum_probs=118.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.+++.++.|+++++++|+.++|+++.||+.++++.+... +..++||+||+|+++.+|..|++.+.++|+|||+
T Consensus 72 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 72 KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEE
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeE
Confidence 489999999999999999999999999999999999999987532 1125899999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEEe
Q 032355 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 141 (142)
Q Consensus 81 iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~~ 141 (142)
|++||++|+|.+..|....+ ...+|++||+++.++|+|+++++|+|||+++++||
T Consensus 151 ii~DN~l~~G~V~~~~~~~~------~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 151 IIADNVLWRGSVADPDDEDP------KTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp EEEETTTGGGGGGSTTGGSH------HHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred EEEccccccceecCccchhh------hHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999998853222 55679999999999999999999999999999997
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.7e-32 Score=202.90 Aligned_cols=141 Identities=54% Similarity=0.982 Sum_probs=120.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.+++.++.|+++++++|+.++|+++.|++.+.|+.+.......++||+||+|++|.+|..|++.++++|+|||+
T Consensus 106 ~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 106 KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeE
Confidence 58999999999999999999999999999999999999998742100125899999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEEe
Q 032355 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 141 (142)
Q Consensus 81 iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~~ 141 (142)
|++||++|+|.+..|....++.......++||+||+.+.++++|+++++|+|||+++++|+
T Consensus 186 iv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 186 IGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred EEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999998874322111111022468999999999999999999999999999987
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=5e-32 Score=202.86 Aligned_cols=134 Identities=39% Similarity=0.661 Sum_probs=120.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.+++.++.|++|++++|+.++|+++.||+.+.|+.+.++ +..++||+||+|+++.+|..|++.++++|+|||+
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcE
Confidence 379999999999999999999999999999999999999886321 1135899999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEEe
Q 032355 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 141 (142)
Q Consensus 81 iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~~ 141 (142)
|++||++|+|.+.+|.... +.+.+|++||+.+.++|+|+++++|+|||+++++|+
T Consensus 224 IV~DNvL~~G~V~d~~~~d------~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 224 IVMDNVLWHGRVADPLVND------AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred EEEecCccCCcccCcccCC------HHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 9999999999998875321 156789999999999999999999999999999986
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=6.4e-32 Score=195.75 Aligned_cols=132 Identities=40% Similarity=0.662 Sum_probs=119.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~-~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
++++||+|+++++.|++|+++.|+.++|+++. ||+.+.+... ..++||+||+|++|.+|++||+.+.++|+|||
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRPGG 160 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999999999 6999998863 26899999999999999999999999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEEe
Q 032355 80 IAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 141 (142)
Q Consensus 80 ~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~~ 141 (142)
+|++||++|+|.+..+.. +..++ ..+.++.|++.+.++|+++++++|+|||+++++|+
T Consensus 161 liv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 161 LIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred EEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence 999999999999988753 12222 66679999999999999999999999999999986
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.97 E-value=5.7e-31 Score=194.04 Aligned_cols=140 Identities=60% Similarity=1.055 Sum_probs=123.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|++|++++|+.++++++.||+.+.++.+..+ .+.++||+||+|++++.|..+++.+.++|+|||+
T Consensus 95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeE
Confidence 489999999999999999999999999999999999999876421 0135899999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEEeC
Q 032355 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 142 (142)
Q Consensus 81 iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~~~ 142 (142)
|++||++|+|.+..+....++..+. ..+++++||+.+.++|++.++++|+|||+++++|+.
T Consensus 174 ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 174 IAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred EEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 9999999999998876433333333 567899999999999999999999999999999863
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.8e-28 Score=175.05 Aligned_cols=135 Identities=56% Similarity=0.957 Sum_probs=121.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|++.++.+.+..+.+|..++|++++|++.+.|+++.++ ++.+.||++|+|++|.+|..|++.+.+++++||+
T Consensus 100 rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 100 RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccE
Confidence 589999999999999999999999999999999999999998654 2457899999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCcchHHHHH---HHHHHhhcCCCeeEEeeecCceeEEEEEe
Q 032355 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---DLNRSLADDPRVQLSHVALGDGITICRRI 141 (142)
Q Consensus 81 iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lp~gdG~~i~~~~ 141 (142)
|++||++|+|.+..|....+. ....++ +||..|..||++..+.+|+|||+++++|+
T Consensus 179 i~~DNvl~~G~v~~p~~~~~~-----~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 179 IVVDNVLWPGVVADPDVNTPV-----RGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred EEEeccccCCcccCcccCCCc-----chhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 999999999987777543332 344677 99999999999999999999999999985
No 7
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.38 E-value=2.8e-12 Score=100.56 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=74.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC------------cCcHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNY 67 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~------------~~~~~~ 67 (142)
+||+||+|...++.|++|++.+|+. ++++++++|+.++++.... .+.+||+|++|||. ..|...
T Consensus 242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l 318 (393)
T COG1092 242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---RGEKFDLIILDPPSFARSKKQEFSAQRDYKDL 318 (393)
T ss_pred ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---cCCcccEEEECCcccccCcccchhHHHHHHHH
Confidence 5899999999999999999999985 6799999999999998853 25699999999973 247788
Q ss_pred HHHHHhcccCCeEEEEecccc
Q 032355 68 HERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~dn~~~ 88 (142)
+..+.++|+|||++++.++..
T Consensus 319 ~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 319 NDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HHHHHHHcCCCCEEEEEecCC
Confidence 888999999999999987764
No 8
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=2.6e-11 Score=95.70 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=70.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC------------cCcHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNY 67 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~------------~~~~~~ 67 (142)
+|+++|+|+.+++.|++|++.+|++ ++++++++|+.++++.+.. ..++||+|++|||. ..|..+
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l 321 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---RGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 321 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh---cCCCCCEEEECCCCCCCChHHHHHHHHHHHHH
Confidence 4899999999999999999999986 5899999999999877632 14589999999974 246777
Q ss_pred HHHHHhcccCCeEEEEecc
Q 032355 68 HERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~dn~ 86 (142)
++.+.++|+|||++++-.+
T Consensus 322 ~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHcCCCeEEEEEeC
Confidence 7888899999999987544
No 9
>PRK04457 spermidine synthase; Provisional
Probab=99.33 E-value=3.3e-11 Score=90.38 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=66.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~~~~~~~~~~ 73 (142)
+|+++|+||++++.|++++...+..++++++.+|+.++++.. .++||+|++|+.... ..++++.+.+
T Consensus 92 ~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 92 RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 489999999999999999876655579999999999998754 468999999974322 3689999999
Q ss_pred cccCCeEEEEe
Q 032355 74 LLKVGGIAVYD 84 (142)
Q Consensus 74 ~L~~gG~iv~d 84 (142)
.|+|||+++++
T Consensus 166 ~L~pgGvlvin 176 (262)
T PRK04457 166 ALSSDGIFVVN 176 (262)
T ss_pred hcCCCcEEEEE
Confidence 99999999985
No 10
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.28 E-value=2.8e-11 Score=91.59 Aligned_cols=82 Identities=27% Similarity=0.459 Sum_probs=65.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---------cCcHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---------~~~~~~~~~ 70 (142)
+|++||.|..+++.|++|++.+|++ ++++++.+|+.+++..+.. .++||+|++|||. ..|..++..
T Consensus 148 ~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~ 223 (286)
T PF10672_consen 148 EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GGRFDLIILDPPSFAKSKFDLERDYKKLLRR 223 (286)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT-EEEEEE--SSEESSTCEHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999986 6899999999999987643 4689999999973 247888888
Q ss_pred HHhcccCCeEEEEecc
Q 032355 71 LMKLLKVGGIAVYDNT 86 (142)
Q Consensus 71 ~~~~L~~gG~iv~dn~ 86 (142)
+.++|+|||.+++-.+
T Consensus 224 a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 224 AMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHTEEEEEEEEEEE-
T ss_pred HHHhcCCCCEEEEEcC
Confidence 9999999999887544
No 11
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.27 E-value=1.1e-10 Score=82.57 Aligned_cols=79 Identities=25% Similarity=0.279 Sum_probs=72.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++++++..++|.+++|+ ++++++.|+|.+.|+.+ ..||.||+.+. .+....++.++..|+|||.
T Consensus 60 ~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 60 RVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred eEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCe
Confidence 589999999999999999999996 58999999999998753 37999999998 7799999999999999999
Q ss_pred EEEecccc
Q 032355 81 AVYDNTLW 88 (142)
Q Consensus 81 iv~dn~~~ 88 (142)
||++.+..
T Consensus 131 lV~naitl 138 (187)
T COG2242 131 LVANAITL 138 (187)
T ss_pred EEEEeecH
Confidence 99987764
No 12
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=9.6e-11 Score=93.55 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=86.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++++++.+++|++++|+. +|+++.+|+.+....... ..+.||.|++|+++..
T Consensus 279 ~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~ 354 (434)
T PRK14901 279 EIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPE 354 (434)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHH
Confidence 4899999999999999999999996 599999999875321100 1357999999997532
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEE-----eee
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVA 130 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp 130 (142)
..++++.+.++|+|||.+|+.++... |. +....+..|+ ..+|+|+.. ++|
T Consensus 355 ~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~~---------Ene~~v~~~l---~~~~~~~~~~~~~~~~P 417 (434)
T PRK14901 355 KIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----PA---------ENEAQIEQFL---ARHPDWKLEPPKQKIWP 417 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hh---------hHHHHHHHHH---HhCCCcEecCCCCccCC
Confidence 13567788899999999999887652 11 1233456664 456777543 345
Q ss_pred c---CceeEEEEEe
Q 032355 131 L---GDGITICRRI 141 (142)
Q Consensus 131 ~---gdG~~i~~~~ 141 (142)
- +||+.+|+-+
T Consensus 418 ~~~~~dGfF~a~l~ 431 (434)
T PRK14901 418 HRQDGDGFFMAVLR 431 (434)
T ss_pred CCCCCCcEEEEEEE
Confidence 2 5999998643
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.26 E-value=2.1e-11 Score=79.47 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=63.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-CCcCc------HHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNY------CNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-~~~~~------~~~~~~~~~ 73 (142)
+|+++|+||++++.|++++...+..++++++++|+ ...... .++||+|++.. ....+ ..+++.+.+
T Consensus 27 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (112)
T PF12847_consen 27 RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFDLVICSGFTLHFLLPLDERRRVLERIRR 99 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCCEEEECCCccccccchhHHHHHHHHHHH
Confidence 48999999999999999998888889999999999 332222 46799999988 32222 346888999
Q ss_pred cccCCeEEEEec
Q 032355 74 LLKVGGIAVYDN 85 (142)
Q Consensus 74 ~L~~gG~iv~dn 85 (142)
.|+|||.++++.
T Consensus 100 ~L~pgG~lvi~~ 111 (112)
T PF12847_consen 100 LLKPGGRLVINT 111 (112)
T ss_dssp HEEEEEEEEEEE
T ss_pred hcCCCcEEEEEE
Confidence 999999999863
No 14
>PLN02366 spermidine synthase
Probab=99.26 E-value=1.9e-10 Score=88.12 Aligned_cols=79 Identities=16% Similarity=0.359 Sum_probs=65.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~~~~~~~ 70 (142)
+|+.||+|+++++.|++++...+ + ++|++++.+|+.++++.. ++++||+|++|+..+. ..++++.
T Consensus 117 ~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~ 191 (308)
T PLN02366 117 QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PEGTYDAIIVDSSDPVGPAQELFEKPFFES 191 (308)
T ss_pred eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cCCCCCEEEEcCCCCCCchhhhhHHHHHHH
Confidence 47899999999999999987642 3 469999999999998754 1468999999976432 3578999
Q ss_pred HHhcccCCeEEEEe
Q 032355 71 LMKLLKVGGIAVYD 84 (142)
Q Consensus 71 ~~~~L~~gG~iv~d 84 (142)
+.+.|+|||+++..
T Consensus 192 ~~~~L~pgGvlv~q 205 (308)
T PLN02366 192 VARALRPGGVVCTQ 205 (308)
T ss_pred HHHhcCCCcEEEEC
Confidence 99999999999875
No 15
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=1.9e-10 Score=87.20 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=64.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--C--CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------cHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYHE 69 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~--~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~~~~~~ 69 (142)
+|++||+|+++++.|++++...+ . +++++++.+|+.++++.. .++||+|++|+..+. ..++++
T Consensus 102 ~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~~yDvIi~D~~dp~~~~~~l~t~ef~~ 175 (283)
T PRK00811 102 KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------ENSFDVIIVDSTDPVGPAEGLFTKEFYE 175 (283)
T ss_pred EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------CCcccEEEECCCCCCCchhhhhHHHHHH
Confidence 48999999999999999997643 2 568999999999988752 578999999974221 256788
Q ss_pred HHHhcccCCeEEEEe
Q 032355 70 RLMKLLKVGGIAVYD 84 (142)
Q Consensus 70 ~~~~~L~~gG~iv~d 84 (142)
.+.+.|+|||++++.
T Consensus 176 ~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 176 NCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHHhcCCCcEEEEe
Confidence 999999999999874
No 16
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.24 E-value=1.1e-10 Score=84.18 Aligned_cols=114 Identities=19% Similarity=0.302 Sum_probs=87.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcccCCCceeEEEEcCCCcCcH-HHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da-~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~-~~~~~~~~~L~~g 78 (142)
++++|-.+++.....++.+...++.+.++|+.|++ .+.++.+ ...||+++|+...+|. .+|+.+ ++-+.|
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~G 142 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRG 142 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCc
Confidence 46888889898888999999999988899999985 4577765 4699999999988888 777764 344578
Q ss_pred eEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecCceeEEEEE
Q 032355 79 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 140 (142)
Q Consensus 79 G~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~i~~~ 140 (142)
.++|+.|.+..+.-. -.+...+...+.+.+++||+|.|+.|++.
T Consensus 143 aVVV~~Na~~r~~~~------------------~~w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 143 AVVVCYNAFSRSTNG------------------FSWRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred eEEEEeccccCCcCC------------------ccHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 888889986532100 01223345678899999999999999874
No 17
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.24 E-value=8.5e-11 Score=83.82 Aligned_cols=84 Identities=26% Similarity=0.419 Sum_probs=66.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC---cHHHHHHHH--hcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHERLM--KLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~---~~~~~~~~~--~~L 75 (142)
+|++||.|++.++..++|++.++..++++++.+|+...+..+.. ...+||+||+|||... +...++.+. ++|
T Consensus 67 ~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l 143 (183)
T PF03602_consen 67 SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---KGEKFDIIFLDPPYAKGLYYEELLELLAENNLL 143 (183)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---CTS-EEEEEE--STTSCHHHHHHHHHHHHTTSE
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---cCCCceEEEECCCcccchHHHHHHHHHHHCCCC
Confidence 48999999999999999999999988899999999998877632 2578999999998543 356777776 689
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+++|+|+++...
T Consensus 144 ~~~~~ii~E~~~ 155 (183)
T PF03602_consen 144 NEDGLIIIEHSK 155 (183)
T ss_dssp EEEEEEEEEEET
T ss_pred CCCEEEEEEecC
Confidence 999999997543
No 18
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.23 E-value=7.2e-11 Score=77.56 Aligned_cols=78 Identities=26% Similarity=0.531 Sum_probs=64.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------cHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------YCNYHE 69 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----------~~~~~~ 69 (142)
+++++|+||..++.|+.++...++.++++++++|+.+..+.+ ..++||+|+.|++... +..+++
T Consensus 25 ~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~ 99 (117)
T PF13659_consen 25 RVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLE 99 (117)
T ss_dssp EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEEEE--STTSBTT----GGCHHHHHHH
T ss_pred eEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEEEECCCCccccccchhhHHHHHHHHH
Confidence 478999999999999999999999889999999999887544 2678999999997432 467789
Q ss_pred HHHhcccCCeEEEE
Q 032355 70 RLMKLLKVGGIAVY 83 (142)
Q Consensus 70 ~~~~~L~~gG~iv~ 83 (142)
.+.++|+|||.+++
T Consensus 100 ~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 100 AAARLLKPGGVLVF 113 (117)
T ss_dssp HHHHHEEEEEEEEE
T ss_pred HHHHHcCCCeEEEE
Confidence 99999999999876
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=84.05 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=70.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|++|++.+++.++++++.+|+.+.++.. .+.||.||+.+....+..+++.+.+.|+|||.
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CCCCCEEEECCCcccHHHHHHHHHHHcCCCcE
Confidence 489999999999999999999997678999999998876653 46899999987666788899999999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
++++.+.
T Consensus 141 lv~~~~~ 147 (198)
T PRK00377 141 IVIDAIL 147 (198)
T ss_pred EEEEeec
Confidence 9986553
No 20
>PLN02823 spermine synthase
Probab=99.22 E-value=2.1e-10 Score=88.74 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=63.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--------C-cHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------N-YCNYH 68 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--------~-~~~~~ 68 (142)
+|++||+|+++++.|++++...+ + ++|++++.+|+.++++.. .++||+||+|...+ . ..+++
T Consensus 129 ~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~ 202 (336)
T PLN02823 129 KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------DEKFDVIIGDLADPVEGGPCYQLYTKSFY 202 (336)
T ss_pred eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------CCCccEEEecCCCccccCcchhhccHHHH
Confidence 48999999999999999986432 2 479999999999998653 57899999996432 1 34678
Q ss_pred H-HHHhcccCCeEEEEe
Q 032355 69 E-RLMKLLKVGGIAVYD 84 (142)
Q Consensus 69 ~-~~~~~L~~gG~iv~d 84 (142)
+ .+.+.|+|||++++.
T Consensus 203 ~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 203 ERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 7 889999999999875
No 21
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.21 E-value=3.4e-11 Score=78.22 Aligned_cols=80 Identities=29% Similarity=0.486 Sum_probs=50.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC--cCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~--~~~~~~~~~~~~~L~~g 78 (142)
+++++|..+. .+.+++++++.++.++++++.++..+.++.+. .++||+||+|++. +.....++.+.+.|+||
T Consensus 25 ~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 25 KLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFIDGDHSYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp --EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEEES---HHHHHHHHHHHGGGEEEE
T ss_pred CEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4789999997 55667777778888899999999999998873 3789999999974 34556788888999999
Q ss_pred eEEEEecc
Q 032355 79 GIAVYDNT 86 (142)
Q Consensus 79 G~iv~dn~ 86 (142)
|+|+++++
T Consensus 99 gviv~dD~ 106 (106)
T PF13578_consen 99 GVIVFDDY 106 (106)
T ss_dssp EEEEEE--
T ss_pred eEEEEeCc
Confidence 99999874
No 22
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=3.2e-10 Score=88.13 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=62.7
Q ss_pred CEEEEeCChhHHHHHHHHH-----HHcCC-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-------Cc-HH
Q 032355 1 MITAIDVNRETYEIGLPII-----KKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NY-CN 66 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~-----~~~~~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-------~~-~~ 66 (142)
+|++||+|+++++.|+++. .+.++ ++|++++.+|+.++++.. .++||+|++|.+.+ .| .+
T Consensus 176 ~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------~~~YDVIIvDl~DP~~~~~~~LyT~E 249 (374)
T PRK01581 176 HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------SSLYDVIIIDFPDPATELLSTLYTSE 249 (374)
T ss_pred eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------CCCccEEEEcCCCccccchhhhhHHH
Confidence 4899999999999999732 22233 479999999999998764 56899999997533 12 56
Q ss_pred HHHHHHhcccCCeEEEEe
Q 032355 67 YHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 67 ~~~~~~~~L~~gG~iv~d 84 (142)
+++.+.+.|+|||++++.
T Consensus 250 Fy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHhcCCCcEEEEe
Confidence 889999999999999886
No 23
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=6.3e-10 Score=88.83 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=66.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++++++.+++|+++.|+. +++++++|+.++.... .++||.|++|+++..
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~ 336 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKE 336 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHH
Confidence 4899999999999999999999986 5999999998753222 467999999998632
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
..+.++.+.+.|+|||.+++..+.+
T Consensus 337 ~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 337 DFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1345777889999999999998875
No 24
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=4.1e-10 Score=90.17 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=66.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY---------------- 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~---------------- 64 (142)
+|+++|+++++++.+++|+++.|+. +++++++|+.+....+ .+.||+|++|++....
T Consensus 277 ~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~ 349 (444)
T PRK14902 277 KVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKE 349 (444)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHH
Confidence 4899999999999999999999986 4999999998764433 3579999999974321
Q ss_pred ---------HHHHHHHHhcccCCeEEEEecccc
Q 032355 65 ---------CNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 65 ---------~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
..+++.+.+.|+|||.+++.++.+
T Consensus 350 ~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 350 DIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 346778889999999999887765
No 25
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=1.7e-10 Score=97.01 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=69.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC--------------cCcH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--------------DNYC 65 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~--------------~~~~ 65 (142)
+|+++|+|+.+++.|++|++.+|++ ++++++++|+.++++.+ .++||+|++|||. ..|.
T Consensus 563 ~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~ 636 (702)
T PRK11783 563 STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHV 636 (702)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcCEEEECCCCCCCCCccchhhhHHHHHH
Confidence 4899999999999999999999986 68999999999988764 4689999999973 1356
Q ss_pred HHHHHHHhcccCCeEEEEeccc
Q 032355 66 NYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 66 ~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
.+++.+.++|+|||++++....
T Consensus 637 ~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 637 ALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred HHHHHHHHHcCCCCEEEEEeCC
Confidence 7788888999999999887553
No 26
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.16 E-value=1.1e-09 Score=82.49 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=82.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~~~~~~~ 70 (142)
+++++|+|+++++.|++++...+ + .++++++.+|+.++++.. .++||+|++|+..+. ..++++.
T Consensus 98 ~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~~yDvIi~D~~~~~~~~~~l~~~ef~~~ 171 (270)
T TIGR00417 98 KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ENTFDVIIVDSTDPVGPAETLFTKEFYEL 171 (270)
T ss_pred eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------CCCccEEEEeCCCCCCcccchhHHHHHHH
Confidence 47899999999999999986643 2 358999999999998764 578999999985321 3577889
Q ss_pred HHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeec---C-ceeEEEEE
Q 032355 71 LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL---G-DGITICRR 140 (142)
Q Consensus 71 ~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~---g-dG~~i~~~ 140 (142)
+.+.|+|||++++.... ..... . ....+.+..+.++.+.....+.+|. | .|+.++-+
T Consensus 172 ~~~~L~pgG~lv~~~~~----~~~~~--------~-~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 172 LKKALNEDGIFVAQSES----PWIQL--------E-LITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HHHHhCCCcEEEEcCCC----cccCH--------H-HHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEEC
Confidence 99999999999986211 01000 0 2333344444445555544455553 3 67887754
No 27
>PLN03075 nicotianamine synthase; Provisional
Probab=99.14 E-value=1.8e-10 Score=87.45 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=68.2
Q ss_pred CEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~-~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~----~~~~~~~~~~~~~~~L 75 (142)
+++++|+|+++++.||++++. .++.++++|+.+|+.+.... .++||+||+++ ++..+..+++.+.+.|
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~L 223 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHM 223 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhc
Confidence 478999999999999999965 88988999999999875321 35799999997 3577899999999999
Q ss_pred cCCeEEEEecc
Q 032355 76 KVGGIAVYDNT 86 (142)
Q Consensus 76 ~~gG~iv~dn~ 86 (142)
+|||++++...
T Consensus 224 kPGG~Lvlr~~ 234 (296)
T PLN03075 224 APGALLMLRSA 234 (296)
T ss_pred CCCcEEEEecc
Confidence 99999999763
No 28
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.14 E-value=2.6e-09 Score=80.23 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=65.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++.+++.+++|++++|+. +++++.+|+..+.. . .+.||.|++|++...
T Consensus 98 ~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~ 169 (264)
T TIGR00446 98 AIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-A------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEE 169 (264)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh-h------ccCCCEEEEcCCCCCCcccccChhhhhcCCHH
Confidence 3899999999999999999999985 69999999976532 1 356999999997542
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
..++++.+.++|+|||.+++..+..
T Consensus 170 ~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 170 DIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1346777888999999999987765
No 29
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.2e-09 Score=87.06 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=64.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++++++.+++|+++.|+. ++++.+|+.+..... ..++||.|++|++...
T Consensus 270 ~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~ 342 (427)
T PRK10901 270 QVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPE 342 (427)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHH
Confidence 4899999999999999999999874 789999997643222 1467999999997532
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
...+++.+.++|+|||.+++..+..
T Consensus 343 ~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 343 DIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1256778888999999999987754
No 30
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.12 E-value=7.2e-10 Score=78.78 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=65.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHH----hc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM----KL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~----~~ 74 (142)
+++.||.|.+.+.+.++|++.+++..+.+++..|+..+++.+. ..++||+||+|||.. .+........ ++
T Consensus 68 ~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~ 143 (187)
T COG0742 68 RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGW 143 (187)
T ss_pred eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCC
Confidence 4799999999999999999999988899999999998888763 123599999999865 2222222222 57
Q ss_pred ccCCeEEEEeccc
Q 032355 75 LKVGGIAVYDNTL 87 (142)
Q Consensus 75 L~~gG~iv~dn~~ 87 (142)
|+|+|+++++.-.
T Consensus 144 L~~~~~iv~E~~~ 156 (187)
T COG0742 144 LKPGALIVVEHDK 156 (187)
T ss_pred cCCCcEEEEEeCC
Confidence 9999999997543
No 31
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=1.7e-09 Score=86.73 Aligned_cols=79 Identities=28% Similarity=0.272 Sum_probs=65.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++++++.+++++++.|+. +|+++.+|+.++.+ .++||.|++|+++..
T Consensus 277 ~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~ 347 (445)
T PRK14904 277 QITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPE 347 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHH
Confidence 4899999999999999999999985 69999999987531 468999999987522
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
...++..+.+.|+|||.+++..+..
T Consensus 348 ~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 348 KLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1246777888999999999987765
No 32
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.11 E-value=1.2e-09 Score=82.61 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=67.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-C------cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-N------YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-~------~~~~~~~ 70 (142)
+++.||+|++.++.|++++.... . ++|++++.+|+.++++.. .++||+|++|...+ . -.++++.
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~fDvIi~D~tdp~gp~~~Lft~eFy~~ 175 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKFDVIIVDSTDPVGPAEALFTEEFYEG 175 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcCCEEEEcCCCCCCcccccCCHHHHHH
Confidence 57999999999999999997643 3 489999999999999875 45899999998543 2 3789999
Q ss_pred HHhcccCCeEEEEe
Q 032355 71 LMKLLKVGGIAVYD 84 (142)
Q Consensus 71 ~~~~L~~gG~iv~d 84 (142)
|.+.|+++|++++.
T Consensus 176 ~~~~L~~~Gi~v~q 189 (282)
T COG0421 176 CRRALKEDGIFVAQ 189 (282)
T ss_pred HHHhcCCCcEEEEe
Confidence 99999999999997
No 33
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.10 E-value=9.7e-10 Score=81.77 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=64.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHhhcccCCC-ceeEEEEcCCCcC-------cHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDN-------YCNYHE 69 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~---~~~v~~~~~da~~~l~~~~~~~~~~~-~fD~IfiD~~~~~-------~~~~~~ 69 (142)
+|+.||+||.+++.|++++..... ++|++++.+|+..++++. .+ +||+|++|...+. -.++++
T Consensus 102 ~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~~~yDvIi~D~~dp~~~~~~l~t~ef~~ 175 (246)
T PF01564_consen 102 SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QEEKYDVIIVDLTDPDGPAPNLFTREFYQ 175 (246)
T ss_dssp EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SST-EEEEEEESSSTTSCGGGGSSHHHHH
T ss_pred eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cCCcccEEEEeCCCCCCCcccccCHHHHH
Confidence 479999999999999999876432 479999999999999875 34 8999999985421 368999
Q ss_pred HHHhcccCCeEEEEec
Q 032355 70 RLMKLLKVGGIAVYDN 85 (142)
Q Consensus 70 ~~~~~L~~gG~iv~dn 85 (142)
.+.+.|+|||+++...
T Consensus 176 ~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 176 LCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHhhcCCCcEEEEEc
Confidence 9999999999999864
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.07 E-value=8e-10 Score=78.65 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=64.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++++++.+++++++.++. +++++++|+.++. ..++||+|++++ ...+..+++.+.++|+|||.
T Consensus 68 ~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--------~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 68 KLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--------HEEQFDVITSRA-LASLNVLLELTLNLLKVGGY 137 (181)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--------ccCCccEEEehh-hhCHHHHHHHHHHhcCCCCE
Confidence 4899999999999999999999885 5999999998752 146899999988 55678889999999999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 138 lvi~ 141 (181)
T TIGR00138 138 FLAY 141 (181)
T ss_pred EEEE
Confidence 9864
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.06 E-value=9.8e-10 Score=72.46 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=65.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++.+++.|+++++..++. +++++.+|+...++.. .++||.|+++.....+..+++.+.+.|+|||.
T Consensus 45 ~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 45 RVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCE
Confidence 4899999999999999999998875 6999999987544332 46899999988766678899999999999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 118 li~~ 121 (124)
T TIGR02469 118 IVLN 121 (124)
T ss_pred EEEE
Confidence 9875
No 36
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.05 E-value=2.8e-09 Score=84.97 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=63.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+++++++.+++|+++.|+..++++..+|+....... ..++||.|++|+++..
T Consensus 264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~ 338 (426)
T TIGR00563 264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPR 338 (426)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHH
Confidence 489999999999999999999998644555777765421111 1467999999987432
Q ss_pred --------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
...+++.+.++|+|||.+++..+.+
T Consensus 339 ~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 339 DIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1357778889999999999998876
No 37
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8e-10 Score=81.58 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=66.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+.++.++.|++|++.+++.++|++..+|..+... ++.||.||+|-+. .+++++.+.+.|+|||.
T Consensus 121 ~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~ 190 (256)
T COG2519 121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLPD--PWNVLEHVSDALKPGGV 190 (256)
T ss_pred eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------ccccCEEEEcCCC--hHHHHHHHHHHhCCCcE
Confidence 5899999999999999999999999889999999988653 4589999999874 58899999999999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++-
T Consensus 191 ~~~y 194 (256)
T COG2519 191 VVVY 194 (256)
T ss_pred EEEE
Confidence 9874
No 38
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=3.2e-09 Score=76.03 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=66.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHH--hccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~--~~L~ 76 (142)
+|+++|.++.+++.+++|++.+++.++++++.+|+.++++.+.. ....||+||+||+.. .+...++.+. .+|+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~ 150 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---KPTFDNVIYLDPPFFNGALQALLELCENNWILE 150 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---cCCCceEEEECcCCCCCcHHHHHHHHHHCCCCC
Confidence 48999999999999999999999877899999999888765521 123599999999853 3455566554 3799
Q ss_pred CCeEEEEecc
Q 032355 77 VGGIAVYDNT 86 (142)
Q Consensus 77 ~gG~iv~dn~ 86 (142)
++|+++++..
T Consensus 151 ~~~iiv~E~~ 160 (189)
T TIGR00095 151 DTVLIVVEED 160 (189)
T ss_pred CCeEEEEEec
Confidence 9999998744
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.04 E-value=8.3e-09 Score=73.46 Aligned_cols=77 Identities=25% Similarity=0.282 Sum_probs=65.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|++|+++.++. +++++.+|+... + .++||+|+++.....+..+++.+.+.|+|||.
T Consensus 57 ~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 57 QVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGR 126 (187)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeE
Confidence 4899999999999999999998875 699999997432 2 35799999988766678889999999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
+++..+.
T Consensus 127 lv~~~~~ 133 (187)
T PRK08287 127 LVLTFIL 133 (187)
T ss_pred EEEEEec
Confidence 9986543
No 40
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=3.9e-09 Score=80.06 Aligned_cols=76 Identities=14% Similarity=0.284 Sum_probs=62.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+++++.|++|++..++.++++++.+|+.+.++ +++||+|++|||.-
T Consensus 147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~ 218 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPEL 218 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHH
Confidence 4899999999999999999999988889999999876432 35799999997631
Q ss_pred ----------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 ----------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 ----------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.|..+++.+.+.|+|||.++++
T Consensus 219 al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 219 ALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1244567777899999999886
No 41
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.03 E-value=3.2e-09 Score=76.63 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=62.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-CcC-cHHHHHHHHh--ccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-~~~-~~~~~~~~~~--~L~ 76 (142)
+|+++|.++++++.|++|++.+++. +++++.+|+.++++.. .++||+||+||| ... +...++.+.+ +|+
T Consensus 78 ~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~ 150 (199)
T PRK10909 78 GATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLA 150 (199)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcC
Confidence 4899999999999999999999975 7999999999877532 357999999999 333 3445555544 478
Q ss_pred CCeEEEEec
Q 032355 77 VGGIAVYDN 85 (142)
Q Consensus 77 ~gG~iv~dn 85 (142)
|+++++++.
T Consensus 151 ~~~iv~ve~ 159 (199)
T PRK10909 151 DEALIYVES 159 (199)
T ss_pred CCcEEEEEe
Confidence 999988863
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.02 E-value=1.6e-09 Score=77.46 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=64.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++++++.|+++++..++++ ++++++|+.+... .++||+|++.+. .++..+++.+.++|+|||.
T Consensus 71 ~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 71 KVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFDVVTSRAV-ASLSDLVELCLPLLKPGGR 140 (187)
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCccEEEEccc-cCHHHHHHHHHHhcCCCeE
Confidence 48999999999999999999999865 9999999987421 358999999874 4578899999999999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++-
T Consensus 141 lv~~ 144 (187)
T PRK00107 141 FLAL 144 (187)
T ss_pred EEEE
Confidence 9875
No 43
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.4e-09 Score=81.16 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=66.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC------------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------------ 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~------------------ 63 (142)
|+++|+++..+...++|++++|..+ +.+++.|+........ ..++||.|++|+++..
T Consensus 185 V~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~ 259 (355)
T COG0144 185 VVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPED 259 (355)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHH
Confidence 6999999999999999999999975 8888888875543321 1236999999998643
Q ss_pred -------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 -------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 -------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
-.++++.+.++|+|||.||+.++..
T Consensus 260 i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 260 IAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 1356778889999999999999986
No 44
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.00 E-value=8.5e-09 Score=83.02 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=67.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY---------------- 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~---------------- 64 (142)
.|+++|+++..++..++|++++|+. ++.+...|+..+...+ .+.||.|++|+++...
T Consensus 140 ~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~ 212 (470)
T PRK11933 140 AIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPE 212 (470)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHH
Confidence 3799999999999999999999996 6999999998754433 4579999999986521
Q ss_pred ---------HHHHHHHHhcccCCeEEEEecccc
Q 032355 65 ---------CNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 65 ---------~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
.++++.+.++|+|||.||+..+.+
T Consensus 213 ~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 213 SNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 356777788999999999999886
No 45
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.96 E-value=3.5e-09 Score=78.47 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=67.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|++||+++++++.|++|++.+++++||+++++|..++.+... ..+||+|++.||.-
T Consensus 70 ~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e 144 (248)
T COG4123 70 KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASFDLIICNPPYFKQGSRLNENPLRAIARHE 144 (248)
T ss_pred cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----ccccCEEEeCCCCCCCccccCcChhhhhhhhh
Confidence 5899999999999999999999999999999999999887652 45799999998620
Q ss_pred ---CcHHHHHHHHhcccCCeEEEE
Q 032355 63 ---NYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 63 ---~~~~~~~~~~~~L~~gG~iv~ 83 (142)
..+++++.+..+|++||.+.+
T Consensus 145 ~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 145 ITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred hcCCHHHHHHHHHHHccCCCEEEE
Confidence 146788888899999999866
No 46
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=3.5e-09 Score=81.16 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=62.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+.+++.|++|++..++.++++++++|+.+.++ .++||+|+++||.-
T Consensus 159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~ 230 (307)
T PRK11805 159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPEL 230 (307)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccc
Confidence 4899999999999999999999988889999999876432 35799999997531
Q ss_pred ----------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 ----------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 ----------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.|..+++.+.+.|+|||.++++
T Consensus 231 AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 231 ALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred eeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1345677777899999999886
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=2.8e-09 Score=77.17 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=61.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|+++++..++.++++++++|+.+.++. ..+||+|++++....+ .+.+.+.|+|||.
T Consensus 99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~ 168 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDAIIVTAAASTI---PSALVRQLKDGGV 168 (205)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccEEEEccCcchh---hHHHHHhcCcCcE
Confidence 48999999999999999999999877899999999875432 4689999999875433 3567789999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 169 lvi~ 172 (205)
T PRK13944 169 LVIP 172 (205)
T ss_pred EEEE
Confidence 9875
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=8.5e-09 Score=76.87 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++++++.|++++...|+.++++++++|+.++.+.. .++||+|++.... .+...+++.+.+.|+|
T Consensus 68 ~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkp 141 (255)
T PRK11036 68 QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDLILFHAVLEWVADPKSVLQTLWSVLRP 141 (255)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCC
Confidence 489999999999999999999998888999999998864322 5689999987532 2456789999999999
Q ss_pred CeEEEE
Q 032355 78 GGIAVY 83 (142)
Q Consensus 78 gG~iv~ 83 (142)
||.+++
T Consensus 142 gG~l~i 147 (255)
T PRK11036 142 GGALSL 147 (255)
T ss_pred CeEEEE
Confidence 999975
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=1.7e-08 Score=72.47 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=65.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.|+++++.|++|++..++. +++++.+|+.+.++.+ ...+|.+++|+.. ....+++.+.+.|+|||.
T Consensus 66 ~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~------~~~~d~v~~~~~~-~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 66 RVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQL------APAPDRVCIEGGR-PIKEILQAVWQYLKPGGR 137 (196)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhC------CCCCCEEEEECCc-CHHHHHHHHHHhcCCCeE
Confidence 4899999999999999999999884 6999999998765543 3457899998753 457889999999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
+++....
T Consensus 138 li~~~~~ 144 (196)
T PRK07402 138 LVATASS 144 (196)
T ss_pred EEEEeec
Confidence 9987543
No 50
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.90 E-value=5.3e-09 Score=76.16 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=60.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|+++++..|+ ++++++.+|+.+.++. ..+||+|++++....+ .+.+.+.|+|||.
T Consensus 104 ~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~ 172 (215)
T TIGR00080 104 LVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKI---PEALIDQLKEGGI 172 (215)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCcccc---cHHHHHhcCcCcE
Confidence 389999999999999999999998 4799999999765332 3589999999875444 3556789999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 173 lv~~ 176 (215)
T TIGR00080 173 LVMP 176 (215)
T ss_pred EEEE
Confidence 9874
No 51
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.6e-09 Score=76.37 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=62.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|++++.++.|++|++.+|+.+ |.+++||+....+. ..+||.|++.+..+..++ .+.+.|++||.
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGr 164 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGR 164 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCE
Confidence 58999999999999999999999974 99999999876553 479999999987655543 45788999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++-
T Consensus 165 lv~P 168 (209)
T COG2518 165 LVIP 168 (209)
T ss_pred EEEE
Confidence 9874
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.89 E-value=5e-09 Score=73.73 Aligned_cols=74 Identities=22% Similarity=0.447 Sum_probs=59.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--------cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--------~~~~~~~~~ 72 (142)
+|+++|+|+.+++.|++|++.+++.+ ++++.+|..+.++ .++||+|+++||... ...+++.+.
T Consensus 57 ~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~ 127 (170)
T PF05175_consen 57 KVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQAR 127 (170)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------ccceeEEEEccchhcccccchhhHHHHHHHHH
Confidence 38999999999999999999999976 9999999876432 478999999987421 356778888
Q ss_pred hcccCCeEEEE
Q 032355 73 KLLKVGGIAVY 83 (142)
Q Consensus 73 ~~L~~gG~iv~ 83 (142)
++|+|||.+++
T Consensus 128 ~~Lk~~G~l~l 138 (170)
T PF05175_consen 128 RYLKPGGRLFL 138 (170)
T ss_dssp HHEEEEEEEEE
T ss_pred HhccCCCEEEE
Confidence 99999998854
No 53
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=6.2e-09 Score=75.76 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=60.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+++++++.|+++++..|+. +++++++|+.+... ...+||+|++++....++ +.+.+.|+|||.
T Consensus 103 ~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~-------~~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~ 171 (212)
T PRK13942 103 KVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE-------ENAPYDRIYVTAAGPDIP---KPLIEQLKDGGI 171 (212)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC-------cCCCcCEEEECCCcccch---HHHHHhhCCCcE
Confidence 4899999999999999999999874 79999999876432 146899999998754443 466788999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 172 lvi~ 175 (212)
T PRK13942 172 MVIP 175 (212)
T ss_pred EEEE
Confidence 9874
No 54
>PRK03612 spermidine synthase; Provisional
Probab=98.87 E-value=7.4e-09 Score=84.50 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=62.9
Q ss_pred CEEEEeCChhHHHHHHHH--HHHc---CC-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--------cHH
Q 032355 1 MITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------YCN 66 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--------~~~ 66 (142)
+|+++|+|+++++.|+++ +... .+ +++++++.+|+.++++.. .++||+|++|.+.+. ..+
T Consensus 323 ~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------~~~fDvIi~D~~~~~~~~~~~L~t~e 396 (521)
T PRK03612 323 QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------AEKFDVIIVDLPDPSNPALGKLYSVE 396 (521)
T ss_pred eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------CCCCCEEEEeCCCCCCcchhccchHH
Confidence 589999999999999994 3332 22 368999999999988754 568999999975332 246
Q ss_pred HHHHHHhcccCCeEEEEec
Q 032355 67 YHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 67 ~~~~~~~~L~~gG~iv~dn 85 (142)
+++.+.+.|+|||++++..
T Consensus 397 f~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHHhcCCCeEEEEec
Confidence 8889999999999998864
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.87 E-value=9.2e-09 Score=70.81 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=66.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~ 77 (142)
+++++|+|+++++.|++.++..++. +++++++|+.+ ++... .++||+|++.+.. ......++.+.+.|++
T Consensus 30 ~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~ 102 (152)
T PF13847_consen 30 KIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKP 102 (152)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTEEEEEEESTGGGTSHHHHHHHHHHHHEEE
T ss_pred EEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCeeEEEEcCchhhccCHHHHHHHHHHHcCC
Confidence 3799999999999999999999987 89999999988 44310 2689999998743 3345678999999999
Q ss_pred CeEEEEeccc
Q 032355 78 GGIAVYDNTL 87 (142)
Q Consensus 78 gG~iv~dn~~ 87 (142)
||.+++....
T Consensus 103 ~G~~i~~~~~ 112 (152)
T PF13847_consen 103 GGILIISDPN 112 (152)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEECC
Confidence 9999887665
No 56
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.81 E-value=3.4e-07 Score=69.46 Aligned_cols=103 Identities=24% Similarity=0.289 Sum_probs=77.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
.|++.|+++..+...+++++++|.. .+.+...|+....+... ...||.|++|+++..
T Consensus 112 ~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~ 185 (283)
T PF01189_consen 112 EIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPE 185 (283)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TT
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc-----ccccchhhcCCCccchhhhhhccchhhccccc
Confidence 3789999999999999999999986 68888899988766542 446999999997542
Q ss_pred --------cHHHHHHHHhcc----cCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeE
Q 032355 64 --------YCNYHERLMKLL----KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 126 (142)
Q Consensus 64 --------~~~~~~~~~~~L----~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (142)
-.+.++.+.+++ +|||.+|+..+...- + |....++.|++ .+++++.
T Consensus 186 ~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~-----e---------ENE~vV~~fl~---~~~~~~l 243 (283)
T PF01189_consen 186 DIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP-----E---------ENEEVVEKFLK---RHPDFEL 243 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG-----G---------GTHHHHHHHHH---HSTSEEE
T ss_pred ccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH-----H---------HHHHHHHHHHH---hCCCcEE
Confidence 134677778899 999999999888632 1 13446777765 4555543
No 57
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.80 E-value=2.6e-08 Score=73.57 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=67.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+|+.|++.|++.+...|..+ +++++|||.++ + + ++++||+|.+.-. ..+++..++++.+.|+|
T Consensus 77 ~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 77 EVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred eEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence 58999999999999999999988876 99999999874 4 4 3789999998643 34678899999999999
Q ss_pred CeEEEEecccc
Q 032355 78 GGIAVYDNTLW 88 (142)
Q Consensus 78 gG~iv~dn~~~ 88 (142)
||.+++-....
T Consensus 149 gG~~~vle~~~ 159 (238)
T COG2226 149 GGRLLVLEFSK 159 (238)
T ss_pred CeEEEEEEcCC
Confidence 99988755543
No 58
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=2.7e-08 Score=75.40 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=62.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+++++.|++|++..++.++++++.+|+.+.++ ..+||+|++++|.-
T Consensus 140 ~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~ 211 (284)
T TIGR00536 140 EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLL 211 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHH
Confidence 4899999999999999999999987789999999876431 34799999987521
Q ss_pred ----------CcHHHHHHHHhcccCCeEEEEecc
Q 032355 63 ----------NYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 63 ----------~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
.|..+++.+.++|+|||.++++.-
T Consensus 212 AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 212 ALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 144566777789999999988743
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.78 E-value=3.2e-07 Score=65.85 Aligned_cols=79 Identities=16% Similarity=0.334 Sum_probs=64.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----------CcHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHE 69 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----------~~~~~~~ 69 (142)
.++++|+++.+++.|++++...++. +++++++|+.+++..+. +.+.+|.|+++.+.+ ....+++
T Consensus 42 ~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~ 116 (194)
T TIGR00091 42 NFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLK 116 (194)
T ss_pred CEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCceeEEEEECCCcCCCCCccccccCCHHHHH
Confidence 4799999999999999999999886 89999999998765442 245899999974321 1257899
Q ss_pred HHHhcccCCeEEEEe
Q 032355 70 RLMKLLKVGGIAVYD 84 (142)
Q Consensus 70 ~~~~~L~~gG~iv~d 84 (142)
.+.+.|+|||.+.+.
T Consensus 117 ~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 117 EYANVLKKGGVIHFK 131 (194)
T ss_pred HHHHHhCCCCEEEEE
Confidence 999999999998763
No 60
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.78 E-value=2.1e-08 Score=74.61 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=62.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcc-cCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~-~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L-~~g 78 (142)
+|++.|.++++++.|++|++..|+.++|++.++|+.+ .+..- .+..+|.||+|-+. ....++.+.+.| ++|
T Consensus 67 ~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-----~~~~~DavfLDlp~--Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 67 HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-----LESDFDAVFLDLPD--PWEAIPHAKRALKKPG 139 (247)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT------TTSEEEEEEESSS--GGGGHHHHHHHE-EEE
T ss_pred EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-----ccCcccEEEEeCCC--HHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999899999999964 33110 13679999999875 467788999999 899
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
|.+++
T Consensus 140 G~i~~ 144 (247)
T PF08704_consen 140 GRICC 144 (247)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 99987
No 61
>PRK00536 speE spermidine synthase; Provisional
Probab=98.77 E-value=7.2e-08 Score=72.26 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=56.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~--~~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~ 77 (142)
+|+.||+|+++++.+|+++... ++ ++|++++.. +... ..++||+|++|... .+++++.+.+.|+|
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~-----~~~~fDVIIvDs~~--~~~fy~~~~~~L~~ 163 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL-----DIKKYDLIICLQEP--DIHKIDGLKRMLKE 163 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----cCCcCCEEEEcCCC--ChHHHHHHHHhcCC
Confidence 5899999999999999976553 23 478999862 2221 13689999999653 37788999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||++++..
T Consensus 164 ~Gi~v~Qs 171 (262)
T PRK00536 164 DGVFISVA 171 (262)
T ss_pred CcEEEECC
Confidence 99999974
No 62
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.77 E-value=5.9e-08 Score=76.20 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=68.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|+++++.+++|++.++.. +++++++|+..++... ..+||+|++||. ....++++.+.+.+++||+
T Consensus 71 ~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvIdlDPf-Gs~~~fld~al~~~~~~gl 142 (374)
T TIGR00308 71 EVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVIDIDPF-GTPAPFVDSAIQASAERGL 142 (374)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEEEeCCC-CCcHHHHHHHHHhcccCCE
Confidence 3899999999999999999998875 6999999999998754 467999999994 4456899999999999999
Q ss_pred EEEe---cccccc
Q 032355 81 AVYD---NTLWGG 90 (142)
Q Consensus 81 iv~d---n~~~~g 90 (142)
+.+. ...+.|
T Consensus 143 L~vTaTD~~~L~G 155 (374)
T TIGR00308 143 LLVTATDTSALCG 155 (374)
T ss_pred EEEEecccHHhcC
Confidence 8764 444444
No 63
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.76 E-value=4.9e-08 Score=73.72 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=63.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEc-----CCCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD-----~~~~~~~~~~~~~~~~L 75 (142)
+|++|.+|++..+.|++.+++.|+.+++++..+|..++ +.+||.|+.= ....+|..+|+.+.++|
T Consensus 87 ~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L 156 (273)
T PF02353_consen 87 HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL 156 (273)
T ss_dssp EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999998764 3589999852 23467899999999999
Q ss_pred cCCeEEEEecccc
Q 032355 76 KVGGIAVYDNTLW 88 (142)
Q Consensus 76 ~~gG~iv~dn~~~ 88 (142)
+|||.++++.+..
T Consensus 157 kpgG~~~lq~i~~ 169 (273)
T PF02353_consen 157 KPGGRLVLQTITH 169 (273)
T ss_dssp ETTEEEEEEEEEE
T ss_pred CCCcEEEEEeccc
Confidence 9999999876665
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=98.75 E-value=7.2e-08 Score=70.55 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=58.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+|+.+++.|++|++..+. +++++.+|+.+.++ .++||+|+++++...
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~ 130 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDA 130 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCeeEEEECCCCCCCCcccccccChhHhhhC
Confidence 479999999999999999998876 58999999876432 468999999975210
Q ss_pred -------cHHHHHHHHhcccCCeEEEE
Q 032355 64 -------YCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 64 -------~~~~~~~~~~~L~~gG~iv~ 83 (142)
+..+++.+.++|+|||.+++
T Consensus 131 ~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 131 GPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 24467778899999999986
No 65
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.75 E-value=1.8e-08 Score=73.24 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=58.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.+++.++.|+++++.++.. +|+++++|+...++. ..+||.|++.+..+..+ ..+.+.|++||.
T Consensus 99 ~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGr 167 (209)
T PF01135_consen 99 RVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGR 167 (209)
T ss_dssp EEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEE
T ss_pred eEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcE
Confidence 3789999999999999999999985 799999999875543 46899999998765444 346788999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+|+-
T Consensus 168 LV~p 171 (209)
T PF01135_consen 168 LVAP 171 (209)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.74 E-value=1.3e-07 Score=68.33 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=62.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---Cc--------CcHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD--------NYCNYHE 69 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~--------~~~~~~~ 69 (142)
+|+++|+++++++.|+++++..++ ++++++++|+.+.++... .++.||+|++..+ .. .+..+++
T Consensus 66 ~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~ 140 (202)
T PRK00121 66 NFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLA 140 (202)
T ss_pred cEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHH
Confidence 489999999999999999999887 579999999944444321 2568999998432 11 2577899
Q ss_pred HHHhcccCCeEEEEe
Q 032355 70 RLMKLLKVGGIAVYD 84 (142)
Q Consensus 70 ~~~~~L~~gG~iv~d 84 (142)
.+.+.|+|||.+++.
T Consensus 141 ~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 141 LYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHcCCCCEEEEE
Confidence 999999999999864
No 67
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.73 E-value=1.2e-07 Score=72.85 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=59.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++++++.|++|++..++ ++++++.+|+.++.... .++||+|++||+......-+...+..+.|+++
T Consensus 197 ~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~i 269 (315)
T PRK03522 197 QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFI 269 (315)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCCeEEEECCCCCCccHHHHHHHHHcCCCeE
Confidence 489999999999999999999998 57999999998876432 35799999999977654434333444677776
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
+.+
T Consensus 270 vyv 272 (315)
T PRK03522 270 LYS 272 (315)
T ss_pred EEE
Confidence 654
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.72 E-value=6.4e-08 Score=73.52 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=64.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|+.+++.|++|+...++.+++.+..++.... ..++||+|+++.....+..++..+.+.|+|||.
T Consensus 184 ~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 184 KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKADVIVANILAEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcE
Confidence 48999999999999999999999888888888773221 146899999987655567788889999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
+++..++
T Consensus 255 li~sgi~ 261 (288)
T TIGR00406 255 LILSGIL 261 (288)
T ss_pred EEEEeCc
Confidence 9987654
No 69
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.70 E-value=4.9e-08 Score=72.13 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=57.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|++++|++.|++.+...+.. +|+++++|+.++ + + ++++||.|++--. .++....++++.+.|+|
T Consensus 74 ~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~-----~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkP 145 (233)
T PF01209_consen 74 KVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F-----PDNSFDAVTCSFGLRNFPDRERALREMYRVLKP 145 (233)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEE
T ss_pred EEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C-----CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCC
Confidence 4799999999999999999998876 899999999874 3 2 2679999997542 23467789999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++-+
T Consensus 146 GG~l~ile 153 (233)
T PF01209_consen 146 GGRLVILE 153 (233)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEee
Confidence 99987643
No 70
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.68 E-value=5.9e-08 Score=70.37 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=59.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.++++++.|++++++.++. ++++..+|+.+.++. .++||+|++++....+ .+.+.+.|+|||.
T Consensus 102 ~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~ 170 (212)
T PRK00312 102 RVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGI 170 (212)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcE
Confidence 4799999999999999999999886 599999998654321 3689999999875443 4567789999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 171 lv~~ 174 (212)
T PRK00312 171 LVAP 174 (212)
T ss_pred EEEE
Confidence 9875
No 71
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.67 E-value=8.4e-08 Score=74.13 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=62.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------CcHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYH 68 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------~~~~~~ 68 (142)
+++++|+|+.+++.|++|++..|+.+ +++.++|+.+. +. ..+.||+|++|+|.. .|..++
T Consensus 206 ~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l 277 (329)
T TIGR01177 206 KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSL 277 (329)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHH
Confidence 47999999999999999999999875 99999999864 21 146899999998631 156788
Q ss_pred HHHHhcccCCeEEEEe
Q 032355 69 ERLMKLLKVGGIAVYD 84 (142)
Q Consensus 69 ~~~~~~L~~gG~iv~d 84 (142)
+.+.+.|+|||.+++-
T Consensus 278 ~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 278 EEFHEVLKSEGWIVYA 293 (329)
T ss_pred HHHHHHccCCcEEEEE
Confidence 8888999999998763
No 72
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.67 E-value=9.9e-08 Score=69.83 Aligned_cols=76 Identities=21% Similarity=0.490 Sum_probs=62.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++++++.|++++...+. ++++++.+|+.+. + + +.++||+|++... .+++...++.+.+.|+|
T Consensus 72 ~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 72 HVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----CCCCccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 479999999999999999988887 5799999999764 1 2 2568999998643 34567888999999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+++-
T Consensus 144 gG~l~~~ 150 (231)
T TIGR02752 144 GGKVVCL 150 (231)
T ss_pred CeEEEEE
Confidence 9999864
No 73
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.66 E-value=2.4e-07 Score=72.85 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=61.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc-HHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~-~~~~~~~~~~L~~gG 79 (142)
+|+++|+|+.+++.|++|++.+++. +++++.+|+.+++... ..+||+|++|||.... ...++.+. .++|++
T Consensus 257 ~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ 328 (374)
T TIGR02085 257 QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKF 328 (374)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCe
Confidence 4899999999999999999999985 7999999998877543 3469999999997653 44555554 468888
Q ss_pred EEEEe
Q 032355 80 IAVYD 84 (142)
Q Consensus 80 ~iv~d 84 (142)
+|.+.
T Consensus 329 ivyvs 333 (374)
T TIGR02085 329 ILYSS 333 (374)
T ss_pred EEEEE
Confidence 87664
No 74
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.66 E-value=4.5e-08 Score=68.44 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=42.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|++||+||..++.|+.|.+-.|..++|++++||+.+.++.+.. ...||+||++||..
T Consensus 23 ~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 23 RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE---BS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEEEECCCCC
Confidence 48999999999999999999999999999999999998776521 12289999999754
No 75
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.66 E-value=1.3e-07 Score=70.96 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=64.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++++++.|+++....++. +++++.+|+.++ + + +++.||+|+.... .++....++.+.+.|+|
T Consensus 104 ~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~Lkp 175 (272)
T PRK11873 104 KVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----ADNSVDVIISNCVINLSPDKERVFKEAFRVLKP 175 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999998874 899999998653 2 1 2468999998753 23456789999999999
Q ss_pred CeEEEEecccc
Q 032355 78 GGIAVYDNTLW 88 (142)
Q Consensus 78 gG~iv~dn~~~ 88 (142)
||.+++.++..
T Consensus 176 GG~l~i~~~~~ 186 (272)
T PRK11873 176 GGRFAISDVVL 186 (272)
T ss_pred CcEEEEEEeec
Confidence 99999876654
No 76
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.66 E-value=1.7e-07 Score=70.01 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=58.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+|+++|+|+.+++.|++|++.++ ++++++|+.+.++... .++||+|++|+|.-.
T Consensus 112 ~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~ 182 (251)
T TIGR03704 112 ELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPR 182 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCH
Confidence 48999999999999999998865 4789999887654321 357999999986320
Q ss_pred ------------cHHHHHHHHhcccCCeEEEEe
Q 032355 64 ------------YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 ------------~~~~~~~~~~~L~~gG~iv~d 84 (142)
+..+++.+.++|+|||.+++.
T Consensus 183 ~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 183 VALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 235566667899999999886
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.65 E-value=1.9e-07 Score=68.95 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=61.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----------------- 63 (142)
+++++|+++.+++.|+++++..++. +++++.+|+.+.++ .++||+|+++++...
T Consensus 113 ~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~ 183 (251)
T TIGR03534 113 RVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPR 183 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCH
Confidence 4789999999999999999998885 79999999876431 468999999876321
Q ss_pred ------------cHHHHHHHHhcccCCeEEEEe
Q 032355 64 ------------YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 ------------~~~~~~~~~~~L~~gG~iv~d 84 (142)
+..+++.+.+.|+|||.+++.
T Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 184 LALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 235567788899999999885
No 78
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.65 E-value=3.1e-07 Score=73.38 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=62.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-cHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-~~~~~~~~~~~L~~gG 79 (142)
+|+++|+++++++.|++|++.+++. +++++.+|+.+.++.+.. ....||+|++|++... ...+++.+. .++|++
T Consensus 316 ~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~---~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ 390 (431)
T TIGR00479 316 SVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPW---AGQIPDVLLLDPPRKGCAAEVLRTII-ELKPER 390 (431)
T ss_pred EEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHh---cCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCE
Confidence 4899999999999999999999884 799999999987765421 1357999999999765 677777655 478888
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
++.+
T Consensus 391 ivyv 394 (431)
T TIGR00479 391 IVYV 394 (431)
T ss_pred EEEE
Confidence 7655
No 79
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.64 E-value=7.3e-08 Score=61.87 Aligned_cols=70 Identities=21% Similarity=0.447 Sum_probs=56.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-cC-----CCcCcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA-----DKDNYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-D~-----~~~~~~~~~~~~~~~ 74 (142)
+++++|+|+++++.++++....+. +++++++|+.++ +.. .++||+|++ .. +......+++.+.++
T Consensus 26 ~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 26 RVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLVVCSGLSLHHLSPEELEALLRRIARL 96 (101)
T ss_dssp EEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999988765 799999999885 332 579999999 33 122356788899999
Q ss_pred ccCCe
Q 032355 75 LKVGG 79 (142)
Q Consensus 75 L~~gG 79 (142)
|+|||
T Consensus 97 l~pgG 101 (101)
T PF13649_consen 97 LRPGG 101 (101)
T ss_dssp EEEEE
T ss_pred hCCCC
Confidence 99998
No 80
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.63 E-value=1.8e-07 Score=76.15 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=61.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+++++.|++|++..++.++++++.+|+.+.++ .++||+|+++++.-
T Consensus 164 ~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~ 235 (506)
T PRK01544 164 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDFIVSNPPYISHSEKSEMAIETINYEPS 235 (506)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccEEEECCCCCCchhhhhcCchhhccCcH
Confidence 4899999999999999999999988899999999865431 45799999987521
Q ss_pred -----------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 -----------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 -----------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.|..+++.+.++|+|||.++++
T Consensus 236 ~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 236 IALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1334556667899999999886
No 81
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.63 E-value=1.7e-07 Score=67.77 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=57.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+||..++..++|++.+++.++++++++|+.++++ ...||-|+++.+... ..+++.+..++++||+
T Consensus 127 ~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~drvim~lp~~~-~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 127 RVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKFDRVIMNLPESS-LEFLDAALSLLKEGGI 197 (200)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EEEEEE--TSSG-GGGHHHHHHHEEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccCEEEECChHHH-HHHHHHHHHHhcCCcE
Confidence 3899999999999999999999999999999999999875 368999999987643 4689999999999998
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
+.+
T Consensus 198 ihy 200 (200)
T PF02475_consen 198 IHY 200 (200)
T ss_dssp EEE
T ss_pred EEC
Confidence 853
No 82
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.62 E-value=2.8e-07 Score=72.62 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=63.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|+++++.+++|++.+++. .++++.+|+.+++.. .++||+|++||+ .....+++.+...+++||+
T Consensus 83 ~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gi 153 (382)
T PRK04338 83 KVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGL 153 (382)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCE
Confidence 4899999999999999999999985 578999999887653 246999999997 4446788888888999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+.+.
T Consensus 154 lyvS 157 (382)
T PRK04338 154 LCVT 157 (382)
T ss_pred EEEE
Confidence 9873
No 83
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.61 E-value=2.8e-07 Score=71.09 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|++||.++++++.|+++.+..+...+++++++++.++- . ..++||+|++-.. ..+...+++.+.++|+|
T Consensus 155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~------~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkP 227 (322)
T PLN02396 155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-D------EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIP 227 (322)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-h------ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCC
Confidence 489999999999999998877666568999999997752 1 1568999997431 22457889999999999
Q ss_pred CeEEEEecc
Q 032355 78 GGIAVYDNT 86 (142)
Q Consensus 78 gG~iv~dn~ 86 (142)
||.+++...
T Consensus 228 GG~liist~ 236 (322)
T PLN02396 228 NGATVLSTI 236 (322)
T ss_pred CcEEEEEEC
Confidence 999998754
No 84
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.61 E-value=2.1e-07 Score=65.80 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+++++.|++|++..+. +++++.+|+.+.. .++||+|+++++..
T Consensus 43 ~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~ 111 (179)
T TIGR00537 43 CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG 111 (179)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---------CCcccEEEECCCCCCCcchhcccchhhhhhhc
Confidence 489999999999999999998775 5899999986632 35899999987531
Q ss_pred ------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 ------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 ------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.+..+++.+.++|+|||.+++-
T Consensus 112 ~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 112 GKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 0345788888999999998774
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=98.60 E-value=3.6e-07 Score=64.49 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=59.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC----------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~-v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~---------------- 63 (142)
+++++|+++++++.+++++...+..++ +.++++|+.+.+. ..+||+|+.+++...
T Consensus 47 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~ 118 (188)
T PRK14968 47 KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GDKFDVILFNPPYLPTEEEEEWDDWLNYALS 118 (188)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------ccCceEEEECCCcCCCCchhhhhhhhhhhhc
Confidence 479999999999999999998887654 8999999866432 347999998865211
Q ss_pred --------cHHHHHHHHhcccCCeEEEEe
Q 032355 64 --------YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 --------~~~~~~~~~~~L~~gG~iv~d 84 (142)
+..+++.+.+.|+|||.+++-
T Consensus 119 ~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 119 GGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred cCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 345688888999999988753
No 86
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.59 E-value=2.5e-07 Score=68.73 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=61.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L 75 (142)
+++++|.|+++++.|+++++..+...+++++.+|+.+.. .+.+|+|++... ......+++.+.+.|
T Consensus 84 ~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~L 154 (247)
T PRK15451 84 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IENASMVVLNFTLQFLEPSERQALLDKIYQGL 154 (247)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999888778999999987641 245899886432 112356889999999
Q ss_pred cCCeEEEEecc
Q 032355 76 KVGGIAVYDNT 86 (142)
Q Consensus 76 ~~gG~iv~dn~ 86 (142)
+|||.+++.+.
T Consensus 155 kpGG~l~l~e~ 165 (247)
T PRK15451 155 NPGGALVLSEK 165 (247)
T ss_pred CCCCEEEEEEe
Confidence 99999987653
No 87
>PLN02244 tocopherol O-methyltransferase
Probab=98.59 E-value=1.8e-07 Score=72.60 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=64.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++.+++.|+++.+..++.++++++.+|+.+. + + ++++||+|++-.. ..+...+++.+.+.|+|
T Consensus 143 ~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~-----~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 143 NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F-----EDGQFDLVWSMESGEHMPDKRKFVQELARVAAP 215 (340)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C-----CCCCccEEEECCchhccCCHHHHHHHHHHHcCC
Confidence 48999999999999999999988888899999999764 1 2 2578999997432 23456789999999999
Q ss_pred CeEEEEecc
Q 032355 78 GGIAVYDNT 86 (142)
Q Consensus 78 gG~iv~dn~ 86 (142)
||.+++...
T Consensus 216 GG~lvi~~~ 224 (340)
T PLN02244 216 GGRIIIVTW 224 (340)
T ss_pred CcEEEEEEe
Confidence 999987543
No 88
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.57 E-value=1.8e-07 Score=68.12 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=64.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC---CCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~---~~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+|+++++.|++++...|+.++++++.+|+.+. + . .++||+|++-. ...+...+++.+.+.|+|
T Consensus 25 ~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I~~~~~l~~~~~~~~~l~~~~~~Lkp 96 (224)
T smart00828 25 QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKD 96 (224)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCC
Confidence 37899999999999999999999988999999998543 1 1 35799999642 123467899999999999
Q ss_pred CeEEEEeccc
Q 032355 78 GGIAVYDNTL 87 (142)
Q Consensus 78 gG~iv~dn~~ 87 (142)
||.+++.+..
T Consensus 97 gG~l~i~~~~ 106 (224)
T smart00828 97 GGHLVLADFI 106 (224)
T ss_pred CCEEEEEEcc
Confidence 9999987654
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.57 E-value=3.3e-07 Score=72.06 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=60.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--------cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~--~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--------~~~~~~~ 70 (142)
+|+++|.|+.+++.|++|++.++.. .+++++.+|+.+.++ +++||+|+++|+... ...++..
T Consensus 254 ~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~ 325 (378)
T PRK15001 254 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFNAVLCNPPFHQQHALTDNVAWEMFHH 325 (378)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCEEEEEECcCcccCccCCHHHHHHHHHH
Confidence 4899999999999999999888653 378999999865321 458999999987421 2457788
Q ss_pred HHhcccCCeEEEEe
Q 032355 71 LMKLLKVGGIAVYD 84 (142)
Q Consensus 71 ~~~~L~~gG~iv~d 84 (142)
+.+.|+|||.+.+.
T Consensus 326 a~~~LkpGG~L~iV 339 (378)
T PRK15001 326 ARRCLKINGELYIV 339 (378)
T ss_pred HHHhcccCCEEEEE
Confidence 88999999998765
No 90
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.57 E-value=5.7e-07 Score=72.19 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=62.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|+++++.|++|++..++. +++++.+|+.+.+..... ..++||+|++|++.....+.++.+.+ ++|+++
T Consensus 321 ~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~i 395 (443)
T PRK13168 321 EVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRI 395 (443)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeE
Confidence 4899999999999999999999885 699999999887643210 13579999999998776777766655 578888
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+.+.
T Consensus 396 vyvS 399 (443)
T PRK13168 396 VYVS 399 (443)
T ss_pred EEEE
Confidence 7664
No 91
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.56 E-value=2.4e-07 Score=64.57 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=58.3
Q ss_pred EEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 3 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 3 ~~ve~~~~~~~~a~~~~~~~--~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++|.|++|++.|++..+.. +..++++++++|+.+. + + .+++||+|++.-. ..+....++.+.+.|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 47999999999998776532 2235799999999764 3 2 2568999987542 23467789999999999
Q ss_pred CeEEEEecc
Q 032355 78 GGIAVYDNT 86 (142)
Q Consensus 78 gG~iv~dn~ 86 (142)
||.+++-+.
T Consensus 74 GG~l~i~d~ 82 (160)
T PLN02232 74 GSRVSILDF 82 (160)
T ss_pred CeEEEEEEC
Confidence 999976443
No 92
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=3.9e-07 Score=68.77 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=68.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
+|+++++|++..+.+++.++..|++.+++++..|..++ .++||.|..=+ .+.+|+.||+.+.+.|
T Consensus 97 ~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L 166 (283)
T COG2230 97 TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALL 166 (283)
T ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhc
Confidence 58999999999999999999999998999999998775 45699998632 4567999999999999
Q ss_pred cCCeEEEEecccc
Q 032355 76 KVGGIAVYDNTLW 88 (142)
Q Consensus 76 ~~gG~iv~dn~~~ 88 (142)
+|||.++...+..
T Consensus 167 ~~~G~~llh~I~~ 179 (283)
T COG2230 167 KPGGRMLLHSITG 179 (283)
T ss_pred CCCceEEEEEecC
Confidence 9999999887764
No 93
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.55 E-value=6.2e-08 Score=60.59 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=55.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|.++++++.+++..... .+.+..+|+.++ + + ++++||+|++-.. .++...+++.+.+.|+|
T Consensus 21 ~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 21 SVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P-F-----PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKP 89 (95)
T ss_dssp EEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S-S------TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEE
T ss_pred EEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c-c-----ccccccccccccceeeccCHHHHHHHHHHHcCc
Confidence 4899999999999999977543 456999998775 2 2 2679999998653 24567889999999999
Q ss_pred CeEEEE
Q 032355 78 GGIAVY 83 (142)
Q Consensus 78 gG~iv~ 83 (142)
||.+++
T Consensus 90 gG~l~~ 95 (95)
T PF08241_consen 90 GGRLVI 95 (95)
T ss_dssp EEEEEE
T ss_pred CeEEeC
Confidence 999874
No 94
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=5.7e-07 Score=69.65 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=68.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+++|+||..++..++|++.+++.++++.++||+.+....+ +.+|-|++..++. -.+++..+.+++++||+|
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVADRIIMGLPKS-AHEFLPLALELLKDGGII 285 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcCcEE
Confidence 89999999999999999999999988999999999987642 6799999988764 366888999999999999
Q ss_pred EEeccc
Q 032355 82 VYDNTL 87 (142)
Q Consensus 82 v~dn~~ 87 (142)
.+....
T Consensus 286 Hyy~~~ 291 (341)
T COG2520 286 HYYEFV 291 (341)
T ss_pred EEEecc
Confidence 887555
No 95
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.54 E-value=8.5e-07 Score=69.50 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhccc---------CCCceeEEEEcCCCcC-cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~---------~~~~fD~IfiD~~~~~-~~~~~~~ 70 (142)
+|+++|.++.+++.|++|++.+++. +++++.+|+.++++.+..... ...+||+||+|||... ....++.
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~ 308 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKL 308 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHH
Confidence 4899999999999999999999985 799999999998876521000 0125999999999755 3444455
Q ss_pred HHhcccCCeEEEE
Q 032355 71 LMKLLKVGGIAVY 83 (142)
Q Consensus 71 ~~~~L~~gG~iv~ 83 (142)
+.+ +++++.+
T Consensus 309 l~~---~~~ivyv 318 (362)
T PRK05031 309 VQA---YERILYI 318 (362)
T ss_pred HHc---cCCEEEE
Confidence 543 6776655
No 96
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.52 E-value=8.1e-07 Score=65.55 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=61.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-----cCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-----~~~~~~~~~~~~~L 75 (142)
+++++|+++++++.|+++++..+...+++++++|+.+.. ...+|+|++.... .+...+++.+.+.|
T Consensus 81 ~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~L 151 (239)
T TIGR00740 81 KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNASMVILNFTLQFLPPEDRIALLTKIYEGL 151 (239)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhc
Confidence 489999999999999999988776678999999997641 2468988765321 12456889999999
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+|||.+++.+..
T Consensus 152 kpgG~l~i~d~~ 163 (239)
T TIGR00740 152 NPNGVLVLSEKF 163 (239)
T ss_pred CCCeEEEEeecc
Confidence 999999886543
No 97
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.51 E-value=7.2e-07 Score=63.96 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=52.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC------CcCcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~------~~~~~~~~~~~~~~ 74 (142)
+++++|+++.+++.|++.+... ++|++++++..+..+ +++||+|++-.- ......++..+...
T Consensus 67 ~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~ 135 (201)
T PF05401_consen 67 RLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAA 135 (201)
T ss_dssp EEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHT
T ss_pred ceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHH
Confidence 4789999999999999988654 589999999987643 679999997431 11234567778889
Q ss_pred ccCCeEEEEe
Q 032355 75 LKVGGIAVYD 84 (142)
Q Consensus 75 L~~gG~iv~d 84 (142)
|+|||.+|+-
T Consensus 136 L~pgG~LV~g 145 (201)
T PF05401_consen 136 LAPGGHLVFG 145 (201)
T ss_dssp EEEEEEEEEE
T ss_pred hCCCCEEEEE
Confidence 9999999984
No 98
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.50 E-value=2.7e-06 Score=64.35 Aligned_cols=119 Identities=16% Similarity=0.282 Sum_probs=92.9
Q ss_pred EEEEeCChhHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------cHHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYHERL 71 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~--~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~~~~~~~~ 71 (142)
+..+|++...++..++++... |++ ++|.++.||+..+++..+ .++||+|+.|.+.+. ...|++.+
T Consensus 148 i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~~~dVii~dssdpvgpa~~lf~~~~~~~v 222 (337)
T KOG1562|consen 148 ILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----ENPFDVIITDSSDPVGPACALFQKPYFGLV 222 (337)
T ss_pred eeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cCCceEEEEecCCccchHHHHHHHHHHHHH
Confidence 678999999999999999874 443 689999999999998774 578999999986432 24578888
Q ss_pred HhcccCCeEEEEe-cccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecC----ceeEEEE
Q 032355 72 MKLLKVGGIAVYD-NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG----DGITICR 139 (142)
Q Consensus 72 ~~~L~~gG~iv~d-n~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~g----dG~~i~~ 139 (142)
.+.|+++|+++.. .+.| . +.. ..+.+++|...++..-.+-.+..|+. -|+.+|.
T Consensus 223 ~~aLk~dgv~~~q~ec~w-----l--------~~~-~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 223 LDALKGDGVVCTQGECMW-----L--------HLD-YIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHhhCCCcEEEEecceeh-----H--------HHH-HHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 9999999999875 3333 1 111 66789999999998888888888853 4666664
No 99
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.50 E-value=4.3e-06 Score=62.28 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=57.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+|+.+++.|++|++..++.+++.+..+ ..+||+|+++.....+..+++.+.+.|+|||.
T Consensus 144 ~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 144 KVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------------DLKADVIVANILANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC---------------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcE
Confidence 389999999999999999999887555554432 12699999987655567788899999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
+++....
T Consensus 209 lilsgi~ 215 (250)
T PRK00517 209 LILSGIL 215 (250)
T ss_pred EEEEECc
Confidence 9986543
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.48 E-value=7e-07 Score=66.89 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=58.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+++++|+++.+++.|++|++ .+...+++++.+|+.+.+. .++||+|+++++..
T Consensus 134 ~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~ 204 (275)
T PRK09328 134 EVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPH 204 (275)
T ss_pred EEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCc
Confidence 47999999999999999998 3444689999999854321 36899999987531
Q ss_pred -----------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 -----------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 -----------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.|..+++.+.++|+|||.+++.
T Consensus 205 ~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 205 LALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1345566777899999999884
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.48 E-value=6.5e-07 Score=71.04 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=58.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------ 62 (142)
+|+++|+|+++++.|++|++..+. +++++++|..+.... ..++||+|+++||.-
T Consensus 277 ~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~ 348 (423)
T PRK14966 277 FVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQI 348 (423)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHH
Confidence 478999999999999999998874 799999998653111 135799999998631
Q ss_pred ----------CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 ----------NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 ----------~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.|..+++.+.+.|+|||.++++
T Consensus 349 AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 349 ALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred HhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 0234555566799999998775
No 102
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=6.4e-07 Score=65.89 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC---CCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~---~~~~~~~~~~~~~~~L~~ 77 (142)
.|+++|+++++++.|+.+....|+. +++....+.++... +++||+|.+=- -.++...++..|.++++|
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP 153 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKP 153 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCC
Confidence 4899999999999999999998874 88888888876542 47999999732 123456789999999999
Q ss_pred CeEEEEecccc
Q 032355 78 GGIAVYDNTLW 88 (142)
Q Consensus 78 gG~iv~dn~~~ 88 (142)
||.++...+..
T Consensus 154 ~G~lf~STinr 164 (243)
T COG2227 154 GGILFLSTINR 164 (243)
T ss_pred CcEEEEecccc
Confidence 99999876654
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.47 E-value=8.9e-07 Score=68.35 Aligned_cols=72 Identities=19% Similarity=0.377 Sum_probs=58.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+++|.++++++.|+++++..|. +++.++.+|+.+.... .++||+|+++....+. .+.+.+.|+|||.+
T Consensus 108 VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~L 176 (322)
T PRK13943 108 VVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRV 176 (322)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------cCCccEEEECCchHHh---HHHHHHhcCCCCEE
Confidence 89999999999999999999998 4799999998765432 3579999998764433 34567889999998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
++.
T Consensus 177 vv~ 179 (322)
T PRK13943 177 IVP 179 (322)
T ss_pred EEE
Confidence 773
No 104
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.46 E-value=1.7e-06 Score=67.23 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=62.9
Q ss_pred CEEEEeCChhHHHHHH--HHHHHcCC----CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-------c-HH
Q 032355 1 MITAIDVNRETYEIGL--PIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------Y-CN 66 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~--~~~~~~~~----~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-------~-~~ 66 (142)
+|+.+|.||+|++.++ .-++..+. ++|++++..||..|++.. .+.||+|++|-+.++ | .+
T Consensus 315 qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a------~~~fD~vIVDl~DP~tps~~rlYS~e 388 (508)
T COG4262 315 QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA------ADMFDVVIVDLPDPSTPSIGRLYSVE 388 (508)
T ss_pred eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh------cccccEEEEeCCCCCCcchhhhhhHH
Confidence 5789999999999999 44444332 479999999999999875 568999999865433 2 46
Q ss_pred HHHHHHhcccCCeEEEEec
Q 032355 67 YHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 67 ~~~~~~~~L~~gG~iv~dn 85 (142)
++..+.+.|+++|++|++.
T Consensus 389 FY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 389 FYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred HHHHHHHhcCcCceEEEec
Confidence 6777788999999999863
No 105
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.45 E-value=7.5e-07 Score=66.81 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=59.7
Q ss_pred CEEEEeCChhHHHHHHHHHHH--cCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~--~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L 75 (142)
+|+++|+|++|++.|+++... .+..++++++++|+.++ + + ++++||+|++.-. .++....++.+.+.|
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvL 172 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----DDCYFDAITMGYGLRNVVDRLKAMQEMYRVL 172 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----CCCCEeEEEEecccccCCCHHHHHHHHHHHc
Confidence 489999999999999887642 22235799999998764 2 2 2568999987532 234577899999999
Q ss_pred cCCeEEEEecc
Q 032355 76 KVGGIAVYDNT 86 (142)
Q Consensus 76 ~~gG~iv~dn~ 86 (142)
+|||.+++-+.
T Consensus 173 kpGG~l~i~d~ 183 (261)
T PLN02233 173 KPGSRVSILDF 183 (261)
T ss_pred CcCcEEEEEEC
Confidence 99999877544
No 106
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.45 E-value=7.6e-07 Score=64.05 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=58.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-----cCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-----~~~~~~~~~~~~~L 75 (142)
+|+++|+|+++++.|+++.+..++. ++++..+|+.+. .+ +++||+|++-... .....+++.+.+.|
T Consensus 54 ~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~L 124 (197)
T PRK11207 54 DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DGEYDFILSTVVLMFLEAKTIPGLIANMQRCT 124 (197)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CCCcCEEEEecchhhCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999988874 699999998653 12 4579999875321 23467889999999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|||.+++
T Consensus 125 kpgG~~~~ 132 (197)
T PRK11207 125 KPGGYNLI 132 (197)
T ss_pred CCCcEEEE
Confidence 99998654
No 107
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.43 E-value=2.8e-07 Score=66.93 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=61.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
+|..+|..+..++.|++++... .....++++...+++-+. +.+||+|++-= ...+...||+.|...|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L 151 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQAL 151 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHE
T ss_pred EeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhC
Confidence 4789999999999999987552 223468888888888653 46899999831 1234678999999999
Q ss_pred cCCeEEEE-eccccccc-ccCCC
Q 032355 76 KVGGIAVY-DNTLWGGT-VAVPE 96 (142)
Q Consensus 76 ~~gG~iv~-dn~~~~g~-~~~~~ 96 (142)
+|+|+|++ +|+...|. +.+++
T Consensus 152 ~~~G~IvvKEN~~~~~~~~~D~~ 174 (218)
T PF05891_consen 152 KPNGVIVVKENVSSSGFDEFDEE 174 (218)
T ss_dssp EEEEEEEEEEEEESSSEEEEETT
T ss_pred cCCcEEEEEecCCCCCCcccCCc
Confidence 99999998 57777765 55544
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=5e-06 Score=63.35 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=60.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+||.+++.|++|.+.++....++....+..+.. ..++||+|+.+--.+-...+...+.++++|||.
T Consensus 187 ~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 187 KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCce
Confidence 489999999999999999999998754444444444332 146999999876444455677788899999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
++...++
T Consensus 259 lIlSGIl 265 (300)
T COG2264 259 LILSGIL 265 (300)
T ss_pred EEEEeeh
Confidence 9998766
No 109
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.41 E-value=1.5e-07 Score=68.93 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=62.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----Cc-HHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NY-CNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~-~~~~~~~~~ 73 (142)
+|+++|.||..++.|+-|=-.-++ +.+++++.||+.+.++.+. +++||+|+-||+.- .| .++++++.+
T Consensus 159 ~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~sfDaIiHDPPRfS~AgeLYseefY~El~R 233 (287)
T COG2521 159 HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DESFDAIIHDPPRFSLAGELYSEEFYRELYR 233 (287)
T ss_pred EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----ccccceEeeCCCccchhhhHhHHHHHHHHHH
Confidence 489999999999999875433333 3468999999999999983 67899999999742 23 567888999
Q ss_pred cccCCeEEEE
Q 032355 74 LLKVGGIAVY 83 (142)
Q Consensus 74 ~L~~gG~iv~ 83 (142)
.|+|||.++-
T Consensus 234 iLkrgGrlFH 243 (287)
T COG2521 234 ILKRGGRLFH 243 (287)
T ss_pred HcCcCCcEEE
Confidence 9999999764
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.5e-06 Score=64.69 Aligned_cols=75 Identities=17% Similarity=0.371 Sum_probs=58.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---c---------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D--------------- 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~--------------- 62 (142)
+|+++|+|+++++.|++|.+.+|+ .++.++.+|..+- + .++||+|+.+||. .
T Consensus 136 ~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~---~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~ 205 (280)
T COG2890 136 EVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP---L------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLL 205 (280)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc---c------CCceeEEEeCCCCCCCcccccChhhhccCHHH
Confidence 489999999999999999999999 5777777765543 3 3589999998852 1
Q ss_pred ----------CcHHHHHHHHhcccCCeEEEEec
Q 032355 63 ----------NYCNYHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 63 ----------~~~~~~~~~~~~L~~gG~iv~dn 85 (142)
.|..+++.+...|+|||++++.-
T Consensus 206 Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 206 ALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 13456666778999999998863
No 111
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.37 E-value=2.8e-06 Score=60.38 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=58.2
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----------CcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----------~~~~~~~~ 70 (142)
++++|+++++++.|++|++.+|+...+.+.++|+.++- + ..+.+|.|+.|+|.. -|..+++.
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~ 136 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRE 136 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHH
Confidence 68999999999999999999999989999999998763 2 156899999999753 26677788
Q ss_pred HHhcccCCeEEEEe
Q 032355 71 LMKLLKVGGIAVYD 84 (142)
Q Consensus 71 ~~~~L~~gG~iv~d 84 (142)
+.+.+++..++++.
T Consensus 137 ~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 137 LKRVLKPRAVFLTT 150 (179)
T ss_dssp HHCHSTTCEEEEEE
T ss_pred HHHHCCCCEEEEEE
Confidence 88889886665553
No 112
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.37 E-value=4.2e-06 Score=65.40 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=58.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--c--cC-----CCceeEEEEcCCCcC-cHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--S--EN-----EGSFDYAFVDADKDN-YCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~--~--~~-----~~~fD~IfiD~~~~~-~~~~~~~ 70 (142)
+|+++|.++++++.|++|++.+++. +++++.+|+.++++..... . .. ...||+||+|||..+ ....++.
T Consensus 221 ~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~ 299 (353)
T TIGR02143 221 RVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKL 299 (353)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHH
Confidence 4899999999999999999999985 6999999999988642100 0 00 124899999999765 3455555
Q ss_pred HHhcccCCeEEEEe
Q 032355 71 LMKLLKVGGIAVYD 84 (142)
Q Consensus 71 ~~~~L~~gG~iv~d 84 (142)
+.+ |++++.++
T Consensus 300 l~~---~~~ivYvs 310 (353)
T TIGR02143 300 VQA---YERILYIS 310 (353)
T ss_pred HHc---CCcEEEEE
Confidence 544 67776653
No 113
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.35 E-value=5e-06 Score=65.56 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=63.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc---------CcHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------NYCNYHERL 71 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~---------~~~~~~~~~ 71 (142)
.++++|+++.+++.|.+++...|+. ++.++.+|+..++..+ +++++|.|++.-+.+ ....+++.+
T Consensus 148 ~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~ 221 (390)
T PRK14121 148 LFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEA 221 (390)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCceeEEEEeCCCCccccchhhccHHHHHHHH
Confidence 4789999999999999999999986 6999999998876554 367899999854311 125789999
Q ss_pred HhcccCCeEEEE
Q 032355 72 MKLLKVGGIAVY 83 (142)
Q Consensus 72 ~~~L~~gG~iv~ 83 (142)
.+.|+|||.+.+
T Consensus 222 ~RvLkpGG~l~l 233 (390)
T PRK14121 222 LRVLKPGGTLEL 233 (390)
T ss_pred HHHcCCCcEEEE
Confidence 999999999876
No 114
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.35 E-value=2.8e-06 Score=61.00 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=55.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L 75 (142)
+|+++|+++.+++.++++.+..++. +++..+|.... .+ +++||+|++-.. ......+++.+.+.|
T Consensus 54 ~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L 123 (195)
T TIGR00477 54 DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHT 123 (195)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------cCCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999888773 77777776542 12 357999986532 223467899999999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|||.+++
T Consensus 124 kpgG~lli 131 (195)
T TIGR00477 124 RPGGYNLI 131 (195)
T ss_pred CCCcEEEE
Confidence 99998554
No 115
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.34 E-value=2.3e-06 Score=66.57 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=58.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--------CcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--------~~~~~~~~~~ 72 (142)
+|+++|+|+.+++.|+++++..++. .+++.+|+.+. . .++||+|+++++.. ....++..+.
T Consensus 222 ~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~ 290 (342)
T PRK09489 222 RLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAV 290 (342)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c------CCCccEEEECCCccCCccccHHHHHHHHHHHH
Confidence 4799999999999999999998874 57788887542 2 46899999998643 2367788888
Q ss_pred hcccCCeEEEE
Q 032355 73 KLLKVGGIAVY 83 (142)
Q Consensus 73 ~~L~~gG~iv~ 83 (142)
+.|+|||.+++
T Consensus 291 ~~LkpgG~L~i 301 (342)
T PRK09489 291 RHLNSGGELRI 301 (342)
T ss_pred HhcCcCCEEEE
Confidence 99999999854
No 116
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=63.67 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=59.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
.|+++|.|++|++.|++.+ .+++|..+|...+- ++...|++|..+. .+...+.|..++..|.|
T Consensus 56 ~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~--------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~P 121 (257)
T COG4106 56 VITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK--------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAP 121 (257)
T ss_pred eEeeccCCHHHHHHHHHhC------CCCceecccHhhcC--------CCCccchhhhhhhhhhccccHHHHHHHHHhhCC
Confidence 3789999999999997744 46899999999883 3568999999873 45678899999999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||++.+.
T Consensus 122 gg~LAVQ 128 (257)
T COG4106 122 GGVLAVQ 128 (257)
T ss_pred CceEEEE
Confidence 9999875
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.32 E-value=6.1e-06 Score=51.29 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=59.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc----CcHHHHHHHHhccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----NYCNYHERLMKLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~----~~~~~~~~~~~~L~ 76 (142)
+++++|.+++..+.+++.....+ ..+++++.+|..+.... ..++||+|+++.... ....+++.+.+.++
T Consensus 23 ~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~ 95 (107)
T cd02440 23 RVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVIISDPPLHHLVEDLARFLEEARRLLK 95 (107)
T ss_pred EEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEEEccceeehhhHHHHHHHHHHHHcC
Confidence 47899999999999986444433 35799999999886531 146899999988643 34677888889999
Q ss_pred CCeEEEEe
Q 032355 77 VGGIAVYD 84 (142)
Q Consensus 77 ~gG~iv~d 84 (142)
|||.+++.
T Consensus 96 ~~g~~~~~ 103 (107)
T cd02440 96 PGGVLVLT 103 (107)
T ss_pred CCCEEEEE
Confidence 99999875
No 118
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=63.88 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=51.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
.|++||+||..++.|+.|++-.|..+||+|++||.+++...++. ....+|+||.-++..
T Consensus 118 ~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~---~K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 118 YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA---DKIKYDCVFLSPPWG 176 (263)
T ss_pred eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh---hhheeeeeecCCCCC
Confidence 37899999999999999999999999999999999999887743 135688999987653
No 119
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.1e-06 Score=66.50 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=62.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcH-HHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~-~~~~~~~~~L~~gG 79 (142)
+|+++|+++++++.|++|.+.+|+.+ ++|..+++.++.+... ....+|.|++||+..... ++++.+.+ +.|..
T Consensus 317 ~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l~~-~~p~~ 390 (432)
T COG2265 317 KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQLAK-LKPKR 390 (432)
T ss_pred EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHHHh-cCCCc
Confidence 58999999999999999999999975 9999999999987652 135799999999987766 66666654 45665
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
++.+
T Consensus 391 IvYV 394 (432)
T COG2265 391 IVYV 394 (432)
T ss_pred EEEE
Confidence 5544
No 120
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.30 E-value=2.9e-06 Score=64.44 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=58.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L 75 (142)
+|+++|.|+.+++.++++.+..++ ++++..+|+... .+ +++||+|++-.. ......+++.+.+.|
T Consensus 144 ~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~L 213 (287)
T PRK12335 144 DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QEEYDFILSTVVLMFLNRERIPAIIKNMQEHT 213 (287)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cCCccEEEEcchhhhCCHHHHHHHHHHHHHhc
Confidence 489999999999999999998887 588888887653 12 468999987542 234577899999999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|||.+++
T Consensus 214 kpgG~~l~ 221 (287)
T PRK12335 214 NPGGYNLI 221 (287)
T ss_pred CCCcEEEE
Confidence 99999554
No 121
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.30 E-value=2.2e-06 Score=63.75 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=56.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++.+++.|++++ ++++++.+|+.++.+ .++||+|++.... .+...+++.+.+.|+|
T Consensus 57 ~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 122 (258)
T PRK01683 57 RITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQALDLIFANASLQWLPDHLELFPRLVSLLAP 122 (258)
T ss_pred EEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCCccEEEEccChhhCCCHHHHHHHHHHhcCC
Confidence 4899999999999999864 358999999876521 4589999987642 3467889999999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+++.
T Consensus 123 gG~~~~~ 129 (258)
T PRK01683 123 GGVLAVQ 129 (258)
T ss_pred CcEEEEE
Confidence 9999874
No 122
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.29 E-value=2.5e-06 Score=62.19 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=62.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|.++.+++.+++++...++..+++++.+|+.+.. . ..+.||+|++... ......+++.+.+.|+|
T Consensus 78 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~ 150 (239)
T PRK00216 78 EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKP 150 (239)
T ss_pred eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCCccEEEEecccccCCCHHHHHHHHHHhccC
Confidence 479999999999999999988777678999999987642 1 2468999997532 23467788999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++-+
T Consensus 151 gG~li~~~ 158 (239)
T PRK00216 151 GGRLVILE 158 (239)
T ss_pred CcEEEEEE
Confidence 99987643
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.29 E-value=9.8e-07 Score=67.30 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=59.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|+||.+++.|++|++.+|+.+++.+. ...+. ..++||+|+.+-..+-...+...+.++|+|||.
T Consensus 186 ~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~ 254 (295)
T PF06325_consen 186 KVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANILADVLLELAPDIASLLKPGGY 254 (295)
T ss_dssp EEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEE
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCE
Confidence 4899999999999999999999999877764 11111 147899999887655556667777789999999
Q ss_pred EEEecccc
Q 032355 81 AVYDNTLW 88 (142)
Q Consensus 81 iv~dn~~~ 88 (142)
++...++-
T Consensus 255 lIlSGIl~ 262 (295)
T PF06325_consen 255 LILSGILE 262 (295)
T ss_dssp EEEEEEEG
T ss_pred EEEccccH
Confidence 99988774
No 124
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.29 E-value=1.8e-06 Score=64.85 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=59.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-cCC----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-D~~----~~~~~~~~~~~~~~L 75 (142)
+|+++|+++.+++.|+++... .+++++..+|+.+. .+ ++++||+|++ ++- ..+...+++.+.+.|
T Consensus 77 ~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~~-----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~L 146 (263)
T PTZ00098 77 HVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--DF-----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWL 146 (263)
T ss_pred EEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--CC-----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHc
Confidence 489999999999999997654 35799999998642 11 2568999998 431 124577899999999
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+|||.+++.+..
T Consensus 147 kPGG~lvi~d~~ 158 (263)
T PTZ00098 147 KPNGILLITDYC 158 (263)
T ss_pred CCCcEEEEEEec
Confidence 999999986553
No 125
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.28 E-value=2.3e-06 Score=63.70 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=54.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++.+++.|++. +++++.+|+.++.+ .++||+|++... .++....++.+.+.|+|
T Consensus 55 ~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 118 (255)
T PRK14103 55 VIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPDTDVVVSNAALQWVPEHADLLVRWVDELAP 118 (255)
T ss_pred EEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCC
Confidence 489999999999999762 47899999876521 468999999653 23457788899999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+++.
T Consensus 119 gG~l~~~ 125 (255)
T PRK14103 119 GSWIAVQ 125 (255)
T ss_pred CcEEEEE
Confidence 9999874
No 126
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.26 E-value=4.9e-06 Score=62.81 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=56.6
Q ss_pred EEEEeCChhHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc----CcHHHHHHHHhccc
Q 032355 2 ITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----NYCNYHERLMKLLK 76 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~-~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~----~~~~~~~~~~~~L~ 76 (142)
|+++|+|+++.+.|++-++ ..|++.+++|+.+|+.+.-..+ ..||+||+-+--. .-.+.++.+.+.++
T Consensus 149 v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~ 221 (276)
T PF03059_consen 149 VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEYDVVFLAALVGMDAEPKEEILEHLAKHMA 221 (276)
T ss_dssp EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------SEEEE-TT-S----SHHHHHHHHHHHS-
T ss_pred EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccCCEEEEhhhcccccchHHHHHHHHHhhCC
Confidence 6799999999999999988 6788889999999998753332 5799999977443 56788999999999
Q ss_pred CCeEEEEecc
Q 032355 77 VGGIAVYDNT 86 (142)
Q Consensus 77 ~gG~iv~dn~ 86 (142)
||+.|++...
T Consensus 222 ~ga~l~~Rsa 231 (276)
T PF03059_consen 222 PGARLVVRSA 231 (276)
T ss_dssp TTSEEEEEE-
T ss_pred CCcEEEEecc
Confidence 9999999733
No 127
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.25 E-value=4.5e-06 Score=56.89 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=69.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC------CCc------CcHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DKD------NYCNYH 68 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~------~~~------~~~~~~ 68 (142)
+|+++|+-+++++.+++.++..++.+++++++.+=......+ +.+++|+++..- ++. .....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-----~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-----PEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-----ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 589999999999999999999999889999998755543323 134899998752 211 135668
Q ss_pred HHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEE
Q 032355 69 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 127 (142)
Q Consensus 69 ~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (142)
+.++++|+|||+|++ +.+.|...- .+..+++.+|.+.|. ...|.+.
T Consensus 76 ~~al~lL~~gG~i~i--v~Y~GH~gG----------~eE~~av~~~~~~L~-~~~~~V~ 121 (140)
T PF06962_consen 76 EAALELLKPGGIITI--VVYPGHPGG----------KEESEAVEEFLASLD-QKEFNVL 121 (140)
T ss_dssp HHHHHHEEEEEEEEE--EE--STCHH----------HHHHHHHHHHHHTS--TTTEEEE
T ss_pred HHHHHhhccCCEEEE--EEeCCCCCC----------HHHHHHHHHHHHhCC-cceEEEE
Confidence 888899999999987 344442100 014456777766652 2455543
No 128
>PRK04266 fibrillarin; Provisional
Probab=98.25 E-value=4.8e-06 Score=61.31 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=56.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHhhcccCCCceeEEEEcCCCc-CcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l--~~~~~~~~~~~~fD~IfiD~~~~-~~~~~~~~~~~~L~~ 77 (142)
+|+++|+++++++.+.++.+.. .++.++.+|+.+.. ..+ .+.||+||+|...+ .....++.+.+.|+|
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKp 168 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKD 168 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCC
Confidence 4899999999999888776553 46899999986421 112 35699999987543 223457888899999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+++.
T Consensus 169 GG~lvI~ 175 (226)
T PRK04266 169 GGYLLLA 175 (226)
T ss_pred CcEEEEE
Confidence 9999885
No 129
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.24 E-value=4.2e-06 Score=67.57 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=61.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+|+++++.|+++.. +...+++++.+|+.+.. + ++++||+|++... ..+...+++.+.+.|+|
T Consensus 291 ~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkp 361 (475)
T PLN02336 291 HVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKP 361 (475)
T ss_pred EEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCC
Confidence 48999999999999998875 44457999999987531 1 2468999998542 23467889999999999
Q ss_pred CeEEEEeccc
Q 032355 78 GGIAVYDNTL 87 (142)
Q Consensus 78 gG~iv~dn~~ 87 (142)
||.+++.+..
T Consensus 362 gG~l~i~~~~ 371 (475)
T PLN02336 362 GGKVLISDYC 371 (475)
T ss_pred CeEEEEEEec
Confidence 9999886543
No 130
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.24 E-value=2.8e-07 Score=58.75 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=44.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|+|+.+++.|++.+...+.. .......+..+..... ..++||+|++-.. .+....+++.+.++|+|
T Consensus 22 ~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~p 95 (99)
T PF08242_consen 22 RYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKP 95 (99)
T ss_dssp EEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE-TTS--S-HHHHHHHHTTT-TS
T ss_pred EEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhhhhHhhhhhHHHHHHHHHHHcCC
Confidence 4789999999999999999888753 3444444444433221 1258999997532 23467788999999999
Q ss_pred CeEE
Q 032355 78 GGIA 81 (142)
Q Consensus 78 gG~i 81 (142)
||.+
T Consensus 96 gG~l 99 (99)
T PF08242_consen 96 GGIL 99 (99)
T ss_dssp S-EE
T ss_pred CCCC
Confidence 9986
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.21 E-value=1.4e-05 Score=58.53 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=61.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|.++.+++.|++++...+. .++++.+++.+..... .++||+|++... ..+....++.+.+.|+|
T Consensus 72 ~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~ 143 (233)
T PRK05134 72 DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKP 143 (233)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCC
Confidence 478999999999999999987765 5889999988764321 468999988532 23456788999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++..
T Consensus 144 gG~l~v~~ 151 (233)
T PRK05134 144 GGLVFFST 151 (233)
T ss_pred CcEEEEEe
Confidence 99998753
No 132
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.19 E-value=7e-06 Score=62.73 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=60.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
+++.+|. |++++.|+++++..|+.++++++.+|+.+. . -+.+|+|++-. +......+++.+.+.|
T Consensus 175 ~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~-------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L 244 (306)
T TIGR02716 175 DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPEADAVLFCRILYSANEQLSTIMCKKAFDAM 244 (306)
T ss_pred EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C-------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhc
Confidence 4788997 899999999999999988999999998752 1 13479987643 2222356789999999
Q ss_pred cCCeEEEEecccc
Q 032355 76 KVGGIAVYDNTLW 88 (142)
Q Consensus 76 ~~gG~iv~dn~~~ 88 (142)
+|||.+++.+..+
T Consensus 245 ~pgG~l~i~d~~~ 257 (306)
T TIGR02716 245 RSGGRLLILDMVI 257 (306)
T ss_pred CCCCEEEEEEecc
Confidence 9999998876655
No 133
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=57.02 Aligned_cols=80 Identities=25% Similarity=0.440 Sum_probs=62.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEE----EcC-------CCcCcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDA-------DKDNYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~If----iD~-------~~~~~~~~~~~ 70 (142)
++++|.++.+++.|+...++.++++.|+|.+.|..+- .. ..++||+|+ .|+ +.....-|+..
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 6789999999999999999999998899999998763 22 156899887 232 12223457778
Q ss_pred HHhcccCCeEEEEecccc
Q 032355 71 LMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 71 ~~~~L~~gG~iv~dn~~~ 88 (142)
+.++|+|||+++.-.+.|
T Consensus 167 v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCNF 184 (227)
T ss_pred HhhccCCCcEEEEEecCc
Confidence 889999999999987776
No 134
>PRK08317 hypothetical protein; Provisional
Probab=98.13 E-value=2.6e-05 Score=56.64 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=60.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|.++.+++.|+++... ...+++++.+|+.+. + + ..++||+|++... ..+...+++.+.+.|+|
T Consensus 46 ~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~ 116 (241)
T PRK08317 46 RVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-F-----PDGSFDAVRSDRVLQHLEDPARALAEIARVLRP 116 (241)
T ss_pred EEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-C-----CCCCceEEEEechhhccCCHHHHHHHHHHHhcC
Confidence 478999999999999998332 335799999998653 1 1 2468999998643 23467789999999999
Q ss_pred CeEEEEecccc
Q 032355 78 GGIAVYDNTLW 88 (142)
Q Consensus 78 gG~iv~dn~~~ 88 (142)
||.+++....+
T Consensus 117 gG~l~~~~~~~ 127 (241)
T PRK08317 117 GGRVVVLDTDW 127 (241)
T ss_pred CcEEEEEecCC
Confidence 99998765443
No 135
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.13 E-value=2.1e-05 Score=57.08 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=61.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|.++.+++.+++++...+.. ++++..+++.++.... .++||+|++... ..+...+++.+.+.|+|
T Consensus 69 ~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~ 141 (224)
T TIGR01983 69 NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKP 141 (224)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCC
Confidence 3789999999999999999887653 6899999998764321 368999998642 23467788999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++..
T Consensus 142 gG~l~i~~ 149 (224)
T TIGR01983 142 GGILFFST 149 (224)
T ss_pred CcEEEEEe
Confidence 99988753
No 136
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.12 E-value=1.5e-05 Score=62.89 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=60.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~-~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
+|++-|+|+++++.+++|++.+++.+ ++++.+.||..++.. ....||+|=+||-- ....|++.+.+.++.||
T Consensus 76 ~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDPfG-Sp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 76 KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDPFG-SPAPFLDSALQAVKDGG 148 (377)
T ss_dssp EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE--SS---HHHHHHHHHHEEEEE
T ss_pred EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCCCC-CccHhHHHHHHHhhcCC
Confidence 37899999999999999999999987 899999999998752 26789999999853 35789999999999999
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
+|.+
T Consensus 149 ll~v 152 (377)
T PF02005_consen 149 LLCV 152 (377)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 137
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=1.7e-05 Score=57.40 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=60.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcccCCCceeEEEEc---CCCcCcHHHHHHHHhccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVD---ADKDNYCNYHERLMKLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~-~~~~da~~~l~~~~~~~~~~~~fD~IfiD---~~~~~~~~~~~~~~~~L~ 76 (142)
+||++|.++.|-++|.+.++...- .++. |+++++.. +++++ +++||.|++- +...+..+.++.+.++|+
T Consensus 101 svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~-l~~l~-----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 101 SVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGEN-LPQLA-----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR 173 (252)
T ss_pred eEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhc-Ccccc-----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcC
Confidence 489999999999999998877643 4566 89998866 45553 7899999753 344556788999999999
Q ss_pred CCeEEEE
Q 032355 77 VGGIAVY 83 (142)
Q Consensus 77 ~gG~iv~ 83 (142)
|||.+++
T Consensus 174 pgG~iif 180 (252)
T KOG4300|consen 174 PGGRIIF 180 (252)
T ss_pred CCcEEEE
Confidence 9999976
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.10 E-value=1.6e-05 Score=55.65 Aligned_cols=85 Identities=11% Similarity=-0.018 Sum_probs=62.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHh--cccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~--~L~~g 78 (142)
+|+++|+|+.+++.+++++.. .++++++++|+.++.. +..+||.|+.+++.....+.+..+.+ .+.++
T Consensus 37 ~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~ 106 (169)
T smart00650 37 RVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRD 106 (169)
T ss_pred eEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCEEEECCCcccHHHHHHHHHhcCCCcce
Confidence 489999999999999998854 3589999999987632 13469999999986544566666664 34588
Q ss_pred eEEEEecccccccccCC
Q 032355 79 GIAVYDNTLWGGTVAVP 95 (142)
Q Consensus 79 G~iv~dn~~~~g~~~~~ 95 (142)
|+++++.-........|
T Consensus 107 ~~l~~q~e~a~rl~~~~ 123 (169)
T smart00650 107 AVLMVQKEVARRLAAKP 123 (169)
T ss_pred EEEEEEHHHhHHhcCCC
Confidence 89888765544444444
No 139
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.08 E-value=2.3e-05 Score=58.33 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=61.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCC--cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~--~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L 75 (142)
+|+.+|+||+|++.+++...+.++.. ++.++.+||.++ + + ++..||..-+--. ....+..++++.+.|
T Consensus 132 ~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F-----dd~s~D~yTiafGIRN~th~~k~l~EAYRVL 204 (296)
T KOG1540|consen 132 KVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F-----DDDSFDAYTIAFGIRNVTHIQKALREAYRVL 204 (296)
T ss_pred eEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C-----CCCcceeEEEecceecCCCHHHHHHHHHHhc
Confidence 58999999999999999888878754 499999999874 4 4 3678999877543 334577899999999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|||.+.+
T Consensus 205 KpGGrf~c 212 (296)
T KOG1540|consen 205 KPGGRFSC 212 (296)
T ss_pred CCCcEEEE
Confidence 99999864
No 140
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.08 E-value=1.4e-05 Score=57.63 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=59.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC---CCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~---~~~~~~~~~~~~~~~L~~ 77 (142)
+++++|+++.+++.+++++. ..++++++.+|+.+.. . ..++||+|++.. .......+++.+.+.|+|
T Consensus 66 ~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~ 135 (223)
T TIGR01934 66 KVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKP 135 (223)
T ss_pred eEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCC
Confidence 47899999999999999886 3457999999998742 1 146899998743 223467788999999999
Q ss_pred CeEEEEecc
Q 032355 78 GGIAVYDNT 86 (142)
Q Consensus 78 gG~iv~dn~ 86 (142)
||.+++-+.
T Consensus 136 gG~l~~~~~ 144 (223)
T TIGR01934 136 GGRLVILEF 144 (223)
T ss_pred CcEEEEEEe
Confidence 999986443
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.07 E-value=5.7e-05 Score=55.67 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=65.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE---cCCCc--------CcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD--------NYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi---D~~~~--------~~~~~~~~ 70 (142)
+++||+....+..|.+.+.+.++. ++.++.+||.++++.+. ++++.|-|++ ||+.. -++.+++.
T Consensus 75 fiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~ 149 (227)
T COG0220 75 FLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKL 149 (227)
T ss_pred EEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEEEEECCCCCCCccccccccCCHHHHHH
Confidence 689999999999999999999996 79999999999999874 2448888876 77521 26889999
Q ss_pred HHhcccCCeEEEE
Q 032355 71 LMKLLKVGGIAVY 83 (142)
Q Consensus 71 ~~~~L~~gG~iv~ 83 (142)
+.+.|+|||.|.+
T Consensus 150 ~a~~Lk~gG~l~~ 162 (227)
T COG0220 150 YARKLKPGGVLHF 162 (227)
T ss_pred HHHHccCCCEEEE
Confidence 9999999999876
No 142
>PRK10742 putative methyltransferase; Provisional
Probab=98.07 E-value=1.7e-05 Score=58.96 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=47.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHc------CC--CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKA------GV--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~------~~--~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|+++|.+|..+...+.+++++ +. ..+++++++|+.++|+.. ..+||+||+||+.+
T Consensus 112 ~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~~~fDVVYlDPMfp 175 (250)
T PRK10742 112 RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLDPMFP 175 (250)
T ss_pred EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------CCCCcEEEECCCCC
Confidence 4899999999999999999986 32 257999999999999875 45799999999643
No 143
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.06 E-value=2.9e-05 Score=59.98 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=60.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|.++.++..++..-+..+...+++++.+++.++ +. .+.||+|++-+. .......++.+.+.|+|
T Consensus 147 ~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lkp 218 (322)
T PRK15068 147 LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVP 218 (322)
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCcCEEEECChhhccCCHHHHHHHHHHhcCC
Confidence 38999999998876655444444445799999998754 21 467999998442 23457789999999999
Q ss_pred CeEEEEecccccc
Q 032355 78 GGIAVYDNTLWGG 90 (142)
Q Consensus 78 gG~iv~dn~~~~g 90 (142)
||.++++.....+
T Consensus 219 GG~lvl~~~~i~~ 231 (322)
T PRK15068 219 GGELVLETLVIDG 231 (322)
T ss_pred CcEEEEEEEEecC
Confidence 9999998665443
No 144
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.04 E-value=2e-05 Score=62.26 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=57.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
+|+++|+|+++++.|+++.+ ++ .+++..+|+.+. .++||.|+.-. ...++..+++.+.+.|
T Consensus 192 ~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L 257 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL 257 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc
Confidence 48999999999999999884 33 488888887543 35799998532 2345678999999999
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+|||.+++..+.
T Consensus 258 kpGG~lvl~~i~ 269 (383)
T PRK11705 258 KPDGLFLLHTIG 269 (383)
T ss_pred CCCcEEEEEEcc
Confidence 999999986543
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.03 E-value=4.2e-05 Score=55.05 Aligned_cols=77 Identities=25% Similarity=0.444 Sum_probs=61.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE---cCC-Cc-------CcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DAD-KD-------NYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi---D~~-~~-------~~~~~~~~ 70 (142)
++++|+....+..|.+.+.+.++. ++.++++||...+..+. +++++|-|++ ||+ +. -.+++++.
T Consensus 44 ~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~----~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~ 118 (195)
T PF02390_consen 44 FIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF----PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLEL 118 (195)
T ss_dssp EEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS----TTTSEEEEEEES-----SGGGGGGSTTSHHHHHH
T ss_pred EEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc----cCCchheEEEeCCCCCcccchhhhhcCCchHHHH
Confidence 689999999999999999999985 79999999999888874 2578999988 553 21 24789999
Q ss_pred HHhcccCCeEEEE
Q 032355 71 LMKLLKVGGIAVY 83 (142)
Q Consensus 71 ~~~~L~~gG~iv~ 83 (142)
+.+.|+|||.|.+
T Consensus 119 ~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 119 LARVLKPGGELYF 131 (195)
T ss_dssp HHHHEEEEEEEEE
T ss_pred HHHHcCCCCEEEE
Confidence 9999999999865
No 146
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.03 E-value=3.3e-05 Score=59.49 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=59.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|.++.++..++..-+..+...++.+..+++.+. +. ...||+||+-+. .......++.+.+.|+|
T Consensus 146 ~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lkp 217 (314)
T TIGR00452 146 SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVI 217 (314)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCcCEEEEcchhhccCCHHHHHHHHHHhcCC
Confidence 38999999999887654333334345788888887653 21 357999998652 23456789999999999
Q ss_pred CeEEEEecccccc
Q 032355 78 GGIAVYDNTLWGG 90 (142)
Q Consensus 78 gG~iv~dn~~~~g 90 (142)
||.+++......|
T Consensus 218 GG~Lvletl~i~g 230 (314)
T TIGR00452 218 KGELVLETLVIDG 230 (314)
T ss_pred CCEEEEEEEEecC
Confidence 9999987665443
No 147
>PRK06922 hypothetical protein; Provisional
Probab=98.01 E-value=2.6e-05 Score=64.99 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=59.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC----------------cCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------------DNY 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~----------------~~~ 64 (142)
+++++|+++.+++.|+++....+ .+++++.+|+.++-..+ ++++||+|++.... ...
T Consensus 444 kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f-----edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl 516 (677)
T PRK06922 444 RIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF-----EKESVDTIVYSSILHELFSYIEYEGKKFNHEVI 516 (677)
T ss_pred EEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc-----CCCCEEEEEEchHHHhhhhhcccccccccHHHH
Confidence 47999999999999999876654 36899999998742123 25689999875311 234
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 032355 65 CNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
..+++.+.+.|+|||.+++.+.
T Consensus 517 ~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 517 KKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEEeC
Confidence 6778888999999999988543
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.00 E-value=3.6e-05 Score=67.47 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=43.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC---------------CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV---------------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|+|+++++.|++|++.+++ .++++++++|..+.+... ..+||+|+..+|
T Consensus 144 ~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPP 212 (1082)
T PLN02672 144 KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIP 212 (1082)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc------CCceEEEEECCC
Confidence 489999999999999999998653 257999999998765321 237999998775
No 149
>PHA03412 putative methyltransferase; Provisional
Probab=97.99 E-value=2.6e-05 Score=57.67 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=55.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----C----------cH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N----------YC 65 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~----------~~ 65 (142)
+|+++|+|+.+++.|++|+ .++.++++|+.... + .++||+|+.+||.. . ..
T Consensus 78 ~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~ 143 (241)
T PHA03412 78 EIVCVELNHTYYKLGKRIV------PEATWINADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEY 143 (241)
T ss_pred EEEEEECCHHHHHHHHhhc------cCCEEEEcchhccc--c------cCCccEEEECCCCCCccccccCCcccccHHHH
Confidence 3899999999999999875 24889999987532 2 45899999998632 1 23
Q ss_pred HHHHHHHhcccCCeEEEEeccc
Q 032355 66 NYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 66 ~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
.+++.+.+++++|+.|+-.+++
T Consensus 144 ~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 144 KVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred HHHHHHHHHcCCCEEEeCcccc
Confidence 4677777888899887766555
No 150
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.98 E-value=2.7e-05 Score=61.53 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=63.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC------------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------------ 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~------------------ 63 (142)
|++-|.+...+...++|+.++|+. +..+...|+.++-.... .++||.|++|+++..
T Consensus 269 I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~d 342 (460)
T KOG1122|consen 269 IFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKD 342 (460)
T ss_pred EEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----CcccceeeecCCCCCCcccccccccccchhHHH
Confidence 788999999999999999999986 56777778776421111 348999999998654
Q ss_pred ---c----HHHHHHHHhcccCCeEEEEecccc
Q 032355 64 ---Y----CNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 ---~----~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
| .+++..+.+++++||+||+..+..
T Consensus 343 i~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 343 ILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred HHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 1 245667778999999999998874
No 151
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.97 E-value=2.5e-05 Score=62.91 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=61.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
+|++||.|+.+....++.+...++.++|+++++|+.++- + +++.|+|+..- ..+..++.+..+.+.|
T Consensus 216 ~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--l------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 216 KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--L------PEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--H------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--C------CCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 489999999999998888889999999999999999872 2 56999998642 2234567788888999
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+|||+++-+...
T Consensus 288 kp~Gi~IP~~~t 299 (448)
T PF05185_consen 288 KPDGIMIPSSYT 299 (448)
T ss_dssp EEEEEEESSEEE
T ss_pred CCCCEEeCcchh
Confidence 999999865443
No 152
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.97 E-value=1.8e-05 Score=58.75 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=55.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|+|+++++.|+++.. ...++.+|+.+. + + .+++||+|+.... ..+....+..+.+.|+|
T Consensus 66 ~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~ 132 (251)
T PRK10258 66 QVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRP 132 (251)
T ss_pred eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCC
Confidence 47999999999999998642 246788888653 2 2 2568999998653 23467789999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++..
T Consensus 133 gG~l~~~~ 140 (251)
T PRK10258 133 GGVVAFTT 140 (251)
T ss_pred CeEEEEEe
Confidence 99998754
No 153
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3.2e-05 Score=58.84 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=58.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--------cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--------~~~~~~~~~ 72 (142)
+++.+|.|..+++.||+|+..++.+. ..++..|..+-. .++||+|+++||.+. -.+++..+.
T Consensus 184 ~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~ 253 (300)
T COG2813 184 KLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAA 253 (300)
T ss_pred eEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc---------cccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence 47999999999999999999998864 378888876543 348999999998543 236788888
Q ss_pred hcccCCeEEE
Q 032355 73 KLLKVGGIAV 82 (142)
Q Consensus 73 ~~L~~gG~iv 82 (142)
+.|++||-+-
T Consensus 254 ~~L~~gGeL~ 263 (300)
T COG2813 254 RHLKPGGELW 263 (300)
T ss_pred HhhccCCEEE
Confidence 9999999863
No 154
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.97 E-value=3.9e-05 Score=61.99 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=57.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~~~~~~~L 75 (142)
+|+++|.++++++.+++. .+..++++++.+|+......+ +.++||+|++..... ....+++.+.+.|
T Consensus 61 ~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~-----~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~L 132 (475)
T PLN02336 61 QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI-----SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWL 132 (475)
T ss_pred EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC-----CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhc
Confidence 489999999999887652 233457999999986421112 246899999876321 1356788899999
Q ss_pred cCCeEEEEecccc
Q 032355 76 KVGGIAVYDNTLW 88 (142)
Q Consensus 76 ~~gG~iv~dn~~~ 88 (142)
+|||.+++.+..+
T Consensus 133 k~gG~l~~~d~~~ 145 (475)
T PLN02336 133 KVGGYIFFRESCF 145 (475)
T ss_pred CCCeEEEEEeccC
Confidence 9999998854443
No 155
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.96 E-value=1.9e-05 Score=57.57 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=53.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~ 61 (142)
+|+++|+|+.+++.+.+ +.++ ..+|+++++|+.++-... .++||.|+--+ +.
T Consensus 58 ~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~~~fD~i~D~~~~~~l~~ 128 (213)
T TIGR03840 58 RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD------LGPVDAVYDRAALIALPE 128 (213)
T ss_pred eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCccc------CCCcCEEEechhhccCCH
Confidence 48999999999998643 2222 246999999998753211 34688887322 22
Q ss_pred cCcHHHHHHHHhcccCCeEEEEeccc
Q 032355 62 DNYCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 62 ~~~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
..-..+++.+.++|+|||.+++....
T Consensus 129 ~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 129 EMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 33466899999999999986665443
No 156
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.95 E-value=2.1e-05 Score=57.28 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=57.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~ 77 (142)
+++++|+++++++.+++.+. ++++++.+|+.+.. + .+++||+|++.... .+....++.+.+.|+|
T Consensus 60 ~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~ 127 (240)
T TIGR02072 60 EFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSFDLIVSNLALQWCDDLSQALSELARVLKP 127 (240)
T ss_pred cEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCC
Confidence 47999999999999988653 37899999987642 1 25689999987532 2457788999999999
Q ss_pred CeEEEEec
Q 032355 78 GGIAVYDN 85 (142)
Q Consensus 78 gG~iv~dn 85 (142)
||.+++..
T Consensus 128 ~G~l~~~~ 135 (240)
T TIGR02072 128 GGLLAFST 135 (240)
T ss_pred CcEEEEEe
Confidence 99998754
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.94 E-value=1e-05 Score=60.77 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=55.2
Q ss_pred CEEEEeCChhHHHHHHHHH------HHcC--------------------CCCcEEEEEccHHHHHHHHhhcccCCCceeE
Q 032355 1 MITAIDVNRETYEIGLPII------KKAG--------------------VDHKINFIESEALSVLDQLLKYSENEGSFDY 54 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~------~~~~--------------------~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~ 54 (142)
+|+++|+|+++++.|++.+ +..+ +.++|+|.++|+.+... +.++||+
T Consensus 134 ~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~ 206 (264)
T smart00138 134 KILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-------PLGDFDL 206 (264)
T ss_pred EEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-------ccCCCCE
Confidence 4899999999999999853 1110 12478999999876321 1468999
Q ss_pred EEEcCC-----CcCcHHHHHHHHhcccCCeEEEEe
Q 032355 55 AFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 55 IfiD~~-----~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
|++-.. .+.-...++.+.+.|+|||.+++.
T Consensus 207 I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 207 IFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 998321 122346788889999999999874
No 158
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.93 E-value=3.6e-05 Score=59.88 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=56.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|.++++++.|+++... .+++++.+|+.+. + + ..+.||+|++... .++....++.+.+.|+|
T Consensus 139 ~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkP 207 (340)
T PLN02490 139 NVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
T ss_pred EEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCC
Confidence 478999999999999997642 3688999998763 1 1 2468999998542 22346788999999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+++-
T Consensus 208 GG~LvIi 214 (340)
T PLN02490 208 GGKACLI 214 (340)
T ss_pred CcEEEEE
Confidence 9998763
No 159
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.93 E-value=2.4e-05 Score=57.29 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=52.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-----cCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDYAFV-----DADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-----D~~~ 61 (142)
+|++||+++.+++.+.+ +.++ ..+|++.++|+.++.+.. .+.||+|+- --+.
T Consensus 61 ~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~------~~~fd~v~D~~~~~~l~~ 131 (218)
T PRK13255 61 EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD------LADVDAVYDRAALIALPE 131 (218)
T ss_pred eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc------CCCeeEEEehHhHhhCCH
Confidence 58999999999998643 2222 357999999998763321 257999982 2223
Q ss_pred cCcHHHHHHHHhcccCCeEEEE
Q 032355 62 DNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 62 ~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
..-..+++.+.++|+|||.+++
T Consensus 132 ~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 132 EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred HHHHHHHHHHHHHcCCCCeEEE
Confidence 3346789999999999986443
No 160
>PHA03411 putative methyltransferase; Provisional
Probab=97.90 E-value=0.00011 Score=55.54 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|+++|+++.+++.|++++ ++++++++|+.++.. ..+||+|+++++.
T Consensus 90 ~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFDlIIsNPPF 136 (279)
T PHA03411 90 KIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFDVVISNPPF 136 (279)
T ss_pred EEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCcEEEEcCCc
Confidence 4899999999999999863 368999999987642 4589999999863
No 161
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00016 Score=56.76 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=58.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----------CcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----------~~~~~~~~ 70 (142)
++++|+|+.+++.|+.|.+++|+.+.|+|.++|+..+-+. .+.+|+|+++||.. -|..+.+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 5699999999999999999999999999999999875221 26899999999743 25566666
Q ss_pred HHhcccCCeEEEE
Q 032355 71 LMKLLKVGGIAVY 83 (142)
Q Consensus 71 ~~~~L~~gG~iv~ 83 (142)
+.+.++.-+..|+
T Consensus 330 lk~~~~~ws~~v~ 342 (381)
T COG0116 330 LKRLLAGWSRYVF 342 (381)
T ss_pred HHHHhcCCceEEE
Confidence 6677765555544
No 162
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=4.3e-05 Score=57.50 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=60.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc----cHHHHHHHHhhcccCCCceeEEEEcCCC---------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIES----EALSVLDQLLKYSENEGSFDYAFVDADK--------------- 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~----da~~~l~~~~~~~~~~~~fD~IfiD~~~--------------- 61 (142)
+|+++|.++.++..|.+|.+++++.+++.+++- |+..-.+. ..+++|+++.+++.
T Consensus 174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~~l~~eV~~ 247 (328)
T KOG2904|consen 174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNRQLKPEVRL 247 (328)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc------ccCceeEEecCCCcccccchhhcCchhee
Confidence 479999999999999999999999999999954 44332221 25789999988752
Q ss_pred -----------c---CcHHHHHHHHhcccCCeEEEEecc
Q 032355 62 -----------D---NYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 62 -----------~---~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
+ .+..++..+.++|+|||.+.++-.
T Consensus 248 yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 248 YEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 0 123456667789999999988744
No 163
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.87 E-value=6.5e-05 Score=53.98 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=58.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L 75 (142)
.|+++|+|+..++.+++..++.+++ |+....|..++ .+ ++.||+|+... ..+..+.+++.+...+
T Consensus 54 ~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~--~~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~ 123 (192)
T PF03848_consen 54 DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF--DF------PEEYDFIVSTVVFMFLQRELRPQIIENMKAAT 123 (192)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB--S-------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTE
T ss_pred eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc--cc------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhc
Confidence 4899999999999999988888875 99999997654 12 46899998642 2344577889999999
Q ss_pred cCCeEEEEecc
Q 032355 76 KVGGIAVYDNT 86 (142)
Q Consensus 76 ~~gG~iv~dn~ 86 (142)
+|||+.+....
T Consensus 124 ~pGG~~li~~~ 134 (192)
T PF03848_consen 124 KPGGYNLIVTF 134 (192)
T ss_dssp EEEEEEEEEEE
T ss_pred CCcEEEEEEEe
Confidence 99999887543
No 164
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.86 E-value=0.0001 Score=53.63 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=55.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-cCC----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-D~~----~~~~~~~~~~~~~~L 75 (142)
+|+++|+|+++++.|++++...+..+++++.++|+.+. .++||+|++ +.- .......+..+.+.+
T Consensus 79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~ 148 (219)
T TIGR02021 79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEFDIVVCMDVLIHYPASDMAKALGHLASLT 148 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHh
Confidence 47999999999999999998887766899999998653 357999986 221 122345677777778
Q ss_pred cCCeEEEEe
Q 032355 76 KVGGIAVYD 84 (142)
Q Consensus 76 ~~gG~iv~d 84 (142)
++++++.+.
T Consensus 149 ~~~~~i~~~ 157 (219)
T TIGR02021 149 KERVIFTFA 157 (219)
T ss_pred CCCEEEEEC
Confidence 877666653
No 165
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.85 E-value=1.8e-05 Score=59.00 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-cCcHHHHHHHHhcccCCeEEEEecccc
Q 032355 11 TYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 11 ~~~~a~~~~~~~~~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-~~~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
..+..++|+.+.|+ .++++++.|...+.++.. +.+++-++.+|++. ......++.+.+.|.|||+|++|+-..
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 35667778877776 468999999999998865 35789999999974 112345777889999999999998765
Q ss_pred cccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeeecC
Q 032355 89 GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 132 (142)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~g 132 (142)
.| ..+++.+|.+. -++...+.++.
T Consensus 216 ~g----------------cr~AvdeF~~~----~gi~~~l~~id 239 (248)
T PF05711_consen 216 PG----------------CRKAVDEFRAE----HGITDPLHPID 239 (248)
T ss_dssp HH----------------HHHHHHHHHHH----TT--S--EE-S
T ss_pred hH----------------HHHHHHHHHHH----cCCCCccEEec
Confidence 33 55678888653 33444455553
No 166
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.82 E-value=3.8e-05 Score=57.33 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=56.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCC-----cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~-----~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~ 72 (142)
+|++||.++++++.|++.....+..+ ++++...++... .++||.|.+=-- ..+..++++.+.
T Consensus 113 ~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~~fDaVvcsevleHV~dp~~~l~~l~ 182 (282)
T KOG1270|consen 113 QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TGKFDAVVCSEVLEHVKDPQEFLNCLS 182 (282)
T ss_pred eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------ccccceeeeHHHHHHHhCHHHHHHHHH
Confidence 48999999999999999954444332 366777766543 467999997321 123577889999
Q ss_pred hcccCCeEEEEeccc
Q 032355 73 KLLKVGGIAVYDNTL 87 (142)
Q Consensus 73 ~~L~~gG~iv~dn~~ 87 (142)
++|+|||.++..++.
T Consensus 183 ~~lkP~G~lfittin 197 (282)
T KOG1270|consen 183 ALLKPNGRLFITTIN 197 (282)
T ss_pred HHhCCCCceEeeehh
Confidence 999999999876554
No 167
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.81 E-value=0.00017 Score=55.25 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=56.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~~~~~~~L 75 (142)
+++++|+|++|++.|++++....-.-++..+++|+.+.++-... .......++|++..-. ....+++.+.+.|
T Consensus 90 ~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~--~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L 167 (301)
T TIGR03438 90 RYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE--PAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL 167 (301)
T ss_pred eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc--cccCCeEEEEecccccCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999987643223578899998765432210 0011345666665422 2345788888999
Q ss_pred cCCeEEEEec
Q 032355 76 KVGGIAVYDN 85 (142)
Q Consensus 76 ~~gG~iv~dn 85 (142)
+|||.+++.-
T Consensus 168 ~pgG~~lig~ 177 (301)
T TIGR03438 168 GPGGGLLIGV 177 (301)
T ss_pred CCCCEEEEec
Confidence 9999998753
No 168
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00014 Score=51.92 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=49.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~~~~~~~ 74 (142)
+|+++|+|+++++.+++|..++ ..++++..+|+.++ ..++|.++++||.. .-..+++.+++.
T Consensus 70 ~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 70 RVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred EEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence 4899999999999999999993 35799999999875 57899999999743 234556555554
No 169
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.75 E-value=0.00023 Score=51.84 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=51.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L 75 (142)
+|+++|.++.+++.|++++...+..+++++..+|.. .. .++||+|++-.. .+.....++.+.+++
T Consensus 87 ~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 87 KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 378999999999999999998887678999999932 21 468999987432 122345566666666
Q ss_pred cCCeEEE
Q 032355 76 KVGGIAV 82 (142)
Q Consensus 76 ~~gG~iv 82 (142)
++++++.
T Consensus 157 ~~~~~i~ 163 (230)
T PRK07580 157 RGSLIFT 163 (230)
T ss_pred CCeEEEE
Confidence 5444443
No 170
>PTZ00146 fibrillarin; Provisional
Probab=97.74 E-value=0.00016 Score=55.05 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=50.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcH-HHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~-~~~~~~~~~L~~gG 79 (142)
+|++||+++.+.+...+..... .+|.++.+|+..... +. ...+.||+||+|...+... .++..+...|+|||
T Consensus 159 ~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~---~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG 231 (293)
T PTZ00146 159 VVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YR---MLVPMVDVIFADVAQPDQARIVALNAQYFLKNGG 231 (293)
T ss_pred EEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hh---cccCCCCEEEEeCCCcchHHHHHHHHHHhccCCC
Confidence 4899999987654444333221 468999999864211 10 0135799999998654333 34456778999999
Q ss_pred EEEEe
Q 032355 80 IAVYD 84 (142)
Q Consensus 80 ~iv~d 84 (142)
.+++.
T Consensus 232 ~~vI~ 236 (293)
T PTZ00146 232 HFIIS 236 (293)
T ss_pred EEEEE
Confidence 99983
No 171
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=0.00017 Score=61.12 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=47.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+++++|+|+++++.|++|+..+|+.+++++.++|+.+..... ..++||+|+.+||.
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPPY 313 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPPY 313 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCCC
Confidence 379999999999999999999999889999999998753221 12579999999974
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.66 E-value=0.00017 Score=55.69 Aligned_cols=58 Identities=12% Similarity=0.283 Sum_probs=45.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEE-ccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~-~~~~~v~~~~-~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+++++|+|+.+++.|++|++.+ ++.++|++++ .+...++..+. ...+.||+|++.||.
T Consensus 140 ~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~---~~~~~fDlivcNPPf 199 (321)
T PRK11727 140 RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII---HKNERFDATLCNPPF 199 (321)
T ss_pred EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc---ccCCceEEEEeCCCC
Confidence 4799999999999999999999 7988999975 45544443321 024689999999874
No 173
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00013 Score=56.56 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=60.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCc------------CcHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNY 67 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------~~~~~ 67 (142)
+++++|++..|++-|+.|++..++. ...+..+ ||... + + .+..+|.|..|||.. -|.+.
T Consensus 221 ~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~ 292 (347)
T COG1041 221 RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEA 292 (347)
T ss_pred eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHH
Confidence 4789999999999999999999976 4666666 88764 3 4 234699999999742 26778
Q ss_pred HHHHHhcccCCeEEEE
Q 032355 68 HERLMKLLKVGGIAVY 83 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~ 83 (142)
++.+.+.|++||.+++
T Consensus 293 le~~~evLk~gG~~vf 308 (347)
T COG1041 293 LESASEVLKPGGRIVF 308 (347)
T ss_pred HHHHHHHhhcCcEEEE
Confidence 8888899999998876
No 174
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.65 E-value=0.0001 Score=55.45 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=49.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
++++|+|+++++.|+++. .++++..+|+.+. + + .+++||+|+.--. +..++.+.+.|+|||.+
T Consensus 115 v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 115 LFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQSLDAIIRIYA----PCKAEELARVVKPGGIV 177 (272)
T ss_pred EEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCceeEEEEecC----CCCHHHHHhhccCCCEE
Confidence 799999999999998742 3588999998763 2 2 2568999986332 22356788899999999
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 178 i~ 179 (272)
T PRK11088 178 IT 179 (272)
T ss_pred EE
Confidence 86
No 175
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.64 E-value=6.8e-05 Score=54.32 Aligned_cols=120 Identities=14% Similarity=0.209 Sum_probs=60.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCC--cCcHHHHHHHHhccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~--~~~~~~~~~~~~~L~ 76 (142)
+|++||++....... .++..++.++|++++||..+ .+....+- -......+|+.|+.. .....-|+...++++
T Consensus 62 ~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~ 138 (206)
T PF04989_consen 62 KVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVS 138 (206)
T ss_dssp EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--
T ss_pred eEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCC
Confidence 489999976554332 22335667899999999864 33332110 012456799999973 345667888889999
Q ss_pred CCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeE
Q 032355 77 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 126 (142)
Q Consensus 77 ~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (142)
+|+.+|+.+..+...........| ..+ ...-..+..++|..+++|+.
T Consensus 139 ~G~Y~IVeDt~~~~~~~~~~~~~~-w~~--g~~p~~av~~fL~~~~~f~i 185 (206)
T PF04989_consen 139 PGSYLIVEDTIIEDWPESWFPDRP-WGP--GNNPKTAVKEFLAEHPDFEI 185 (206)
T ss_dssp TT-EEEETSHHHHHHHHS----------------HHHHHHHHHTTTTEEE
T ss_pred CCCEEEEEeccccccccccccccc-hhh--hhHHHHHHHHHHHHCCCcEe
Confidence 999999988877554333221111 110 11124444555778888664
No 176
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.61 E-value=0.00072 Score=50.08 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=45.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~~~L~~g 78 (142)
+|+.+|+|+..++..++..++.|+. |+.++.|..+-|+.-. .++||++|.||+.. ...-++......|+..
T Consensus 69 ~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~ 141 (243)
T PF01861_consen 69 RITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGE 141 (243)
T ss_dssp EEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BSEEEE---SSHHHHHHHHHHHHHTB-ST
T ss_pred eEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999985 9999999999887632 47999999999853 3344677777888855
Q ss_pred e
Q 032355 79 G 79 (142)
Q Consensus 79 G 79 (142)
|
T Consensus 142 g 142 (243)
T PF01861_consen 142 G 142 (243)
T ss_dssp T
T ss_pred C
Confidence 5
No 177
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.59 E-value=0.0002 Score=55.99 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=44.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc---------ccCCCceeEEEEcCCCcCcH-HHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY---------SENEGSFDYAFVDADKDNYC-NYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~---------~~~~~~fD~IfiD~~~~~~~-~~~~~ 70 (142)
+|++||.++++++.|++|++.+++. +++++.+++.++...+... ......+|+|++|||..+.. ..++.
T Consensus 220 ~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~ 298 (352)
T PF05958_consen 220 KVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIEL 298 (352)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHH
T ss_pred eEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHH
Confidence 4899999999999999999999985 7999999987754332100 00123699999999976644 34554
Q ss_pred HH
Q 032355 71 LM 72 (142)
Q Consensus 71 ~~ 72 (142)
+.
T Consensus 299 ~~ 300 (352)
T PF05958_consen 299 IK 300 (352)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.59 E-value=0.00056 Score=48.88 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=60.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+++.+|.+...+...+.-.+.+|++ +++++++.+.+ .. ...+||+|..=+-. ....+++.+.+++++||.
T Consensus 74 ~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~aRAv~-~l~~l~~~~~~~l~~~G~ 143 (184)
T PF02527_consen 74 QVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVTARAVA-PLDKLLELARPLLKPGGR 143 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEEEESSS-SHHHHHHHHGGGEEEEEE
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEEeehhc-CHHHHHHHHHHhcCCCCE
Confidence 3789999999999999999999996 79999999988 11 26789999998765 367889999999999999
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
+++
T Consensus 144 ~l~ 146 (184)
T PF02527_consen 144 LLA 146 (184)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00023 Score=52.79 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=53.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCC----------------------------------CCcEEEEEc----cHHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGV----------------------------------DHKINFIES----EALSVLDQLL 43 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~----------------------------------~~~v~~~~~----da~~~l~~~~ 43 (142)
|+++|+|+..++.|+++++..-- .+++.+... +..+++. +
T Consensus 85 iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~-~- 162 (288)
T KOG2899|consen 85 ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLD-M- 162 (288)
T ss_pred eeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecchhhh-h-
Confidence 78999999999999999875311 001111111 1123332 1
Q ss_pred hcccCCCceeEEEEcC---------CCcCcHHHHHHHHhcccCCeEEEEecccc
Q 032355 44 KYSENEGSFDYAFVDA---------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 44 ~~~~~~~~fD~IfiD~---------~~~~~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
....||+|++=+ .......+|..+.++|.|||++|++-=-|
T Consensus 163 ----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW 212 (288)
T KOG2899|consen 163 ----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW 212 (288)
T ss_pred ----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch
Confidence 146799999733 12346789999999999999999974444
No 180
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.52 E-value=0.00029 Score=47.20 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=39.7
Q ss_pred cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC--CcC----cHHHHHHHHhcccCCeEEEEe
Q 032355 27 KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 27 ~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~--~~~----~~~~~~~~~~~L~~gG~iv~d 84 (142)
.+++..||+.+.++++ ...||.||+|+- ..+ -.++++.+.+++++||.+..-
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 4688999999999987 578999999983 223 267899999999999998763
No 181
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.42 E-value=0.00046 Score=47.04 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=47.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+++++|+++.+++. .++.....+...... ++++||+|++-.. .++...+++.+.++|+|
T Consensus 46 ~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkp 107 (161)
T PF13489_consen 46 EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKP 107 (161)
T ss_dssp EEEEEESSHHHHHH-----------TTSEEEEEECHTHHC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEE
T ss_pred EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCC
Confidence 47899999999988 122222222222211 1679999998653 23467889999999999
Q ss_pred CeEEEEeccc
Q 032355 78 GGIAVYDNTL 87 (142)
Q Consensus 78 gG~iv~dn~~ 87 (142)
||.+++....
T Consensus 108 gG~l~~~~~~ 117 (161)
T PF13489_consen 108 GGYLVISDPN 117 (161)
T ss_dssp EEEEEEEEEB
T ss_pred CCEEEEEEcC
Confidence 9999987655
No 182
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.39 E-value=0.0012 Score=48.31 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=51.7
Q ss_pred CEEEEeCChhHHHHHHH-HHHH-----cC-----CCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC------CCcC
Q 032355 1 MITAIDVNRETYEIGLP-IIKK-----AG-----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DKDN 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~-~~~~-----~~-----~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~------~~~~ 63 (142)
+|+++|+++.+++.+.+ +-.. .+ -..+|++.+||..++-+.. .++||+|+ |- +...
T Consensus 61 ~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iy-Dr~~l~Alpp~~ 133 (218)
T PF05724_consen 61 DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED------VGKFDLIY-DRTFLCALPPEM 133 (218)
T ss_dssp EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC------HHSEEEEE-ECSSTTTS-GGG
T ss_pred eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh------cCCceEEE-EecccccCCHHH
Confidence 48999999999999843 2210 01 1246899999998853211 25799998 32 2233
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 032355 64 YCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 64 ~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
-..|.+.+.++|+|||.++.-..
T Consensus 134 R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 134 RERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEEE
Confidence 47789999999999999554333
No 183
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.38 E-value=0.0013 Score=47.72 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=49.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-cCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-~~~~~~~~~~~~~L~~gG 79 (142)
+++++|+++.-++.|++++++.|+.++|+++.||+++.++. ++..|.|++-+-- ....+.++.....++...
T Consensus 23 ~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~ 95 (205)
T PF04816_consen 23 KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVIAGMGGELIIEILEAGPEKLSSAK 95 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEEEEE-HHHHHHHHHHTGGGGTT--
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEEecCCHHHHHHHHHhhHHHhccCC
Confidence 47999999999999999999999999999999999987753 3348999986531 123445555555554443
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
.+|.
T Consensus 96 ~lIL 99 (205)
T PF04816_consen 96 RLIL 99 (205)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4444
No 184
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00056 Score=51.53 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=57.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
++++.|..+..++.|++.++..|+.+++++.+-|.+.. .+.. ....+|.||+|-+.+ ...+..+.+.|+.+|.
T Consensus 132 hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~--GF~~---ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 132 HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS--GFLI---KSLKADAVFLDLPAP--WEAIPHAAKILKDEGG 204 (314)
T ss_pred ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--Cccc---cccccceEEEcCCCh--hhhhhhhHHHhhhcCc
Confidence 57899999999999999999999999999999998753 1110 146799999998743 4456666677776664
Q ss_pred E
Q 032355 81 A 81 (142)
Q Consensus 81 i 81 (142)
-
T Consensus 205 r 205 (314)
T KOG2915|consen 205 R 205 (314)
T ss_pred e
Confidence 3
No 185
>PRK11524 putative methyltransferase; Provisional
Probab=97.37 E-value=0.00049 Score=52.25 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=41.8
Q ss_pred CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC---------------c----HHHHHHHHhcccCCeEEEE
Q 032355 26 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------Y----CNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 26 ~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~---------------~----~~~~~~~~~~L~~gG~iv~ 83 (142)
...+++++|+.+.+..+. +++||+||+||+... | ..++..+.++|+|||.+++
T Consensus 7 ~~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 356899999999987763 678999999997421 2 2467778899999999876
No 186
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.37 E-value=0.0011 Score=50.37 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=65.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC------cHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~------~~~~~~~~~~~ 74 (142)
+|...|.++..++..++.++..|+.+-++|.++||.+.- .+++ -....+++++-+-.+. ....+.-+...
T Consensus 163 ~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~---l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a 238 (311)
T PF12147_consen 163 SILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA---LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARA 238 (311)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc---cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHH
Confidence 367899999999999999999999987899999998752 2221 1456899998764322 22345556678
Q ss_pred ccCCeEEEEecccccc
Q 032355 75 LKVGGIAVYDNTLWGG 90 (142)
Q Consensus 75 L~~gG~iv~dn~~~~g 90 (142)
+.|||.+|+.+--||-
T Consensus 239 l~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 239 LEPGGYLIYTGQPWHP 254 (311)
T ss_pred hCCCcEEEEcCCCCCc
Confidence 9999999998866654
No 187
>PRK13699 putative methylase; Provisional
Probab=97.37 E-value=0.00039 Score=51.21 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=40.5
Q ss_pred EEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--------------C----cHHHHHHHHhcccCCeEEEE
Q 032355 28 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------N----YCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 28 v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--------------~----~~~~~~~~~~~L~~gG~iv~ 83 (142)
+++++||+.+.++.+ +++++|+|+.|||.. . +..+++.+.+.|+|||.+++
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478999999999987 378999999999752 0 12456777789999998874
No 188
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.31 E-value=0.00016 Score=51.77 Aligned_cols=78 Identities=8% Similarity=0.098 Sum_probs=60.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEc---CC--CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---AD--KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD---~~--~~~~~~~~~~~~~~L 75 (142)
+|++||.||..+.+|++|+.-.|+. +++++.|||..+ . -+..|+|+|. .. .......++.+++.|
T Consensus 56 rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y--~-------fe~ADvvicEmlDTaLi~E~qVpV~n~vleFL 125 (252)
T COG4076 56 RVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDY--D-------FENADVVICEMLDTALIEEKQVPVINAVLEFL 125 (252)
T ss_pred eEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccc--c-------ccccceeHHHHhhHHhhcccccHHHHHHHHHh
Confidence 5899999999999999999777774 799999999876 1 2467888763 21 122456788899999
Q ss_pred cCCeEEEEecccc
Q 032355 76 KVGGIAVYDNTLW 88 (142)
Q Consensus 76 ~~gG~iv~dn~~~ 88 (142)
+.++.|+-..+..
T Consensus 126 r~d~tiiPq~v~~ 138 (252)
T COG4076 126 RYDPTIIPQEVRI 138 (252)
T ss_pred hcCCccccHHHhh
Confidence 9999988665544
No 189
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0015 Score=51.10 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=62.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+.-|+||++++.+++|++.+... ...+++.||-.++.+. ...||+|=+||-- ...+|++.+.+.++.||+
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~IDiDPFG-SPaPFlDaA~~s~~~~G~ 149 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDVIDIDPFG-SPAPFLDAALRSVRRGGL 149 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccEEecCCCC-CCchHHHHHHHHhhcCCE
Confidence 4788899999999999999988443 4677779999988764 5789999999853 357799999999999999
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
+.+
T Consensus 150 l~v 152 (380)
T COG1867 150 LCV 152 (380)
T ss_pred EEE
Confidence 976
No 190
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.28 E-value=0.00059 Score=49.42 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-----cCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-----~~~~~~~~~~~~~L 75 (142)
+++++|+|+++++.|++++ .++++.++|+.+. + .+++||+|++.... ......++.+.+.+
T Consensus 69 ~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~---~-----~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 69 HIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP---F-----KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred eEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC---C-----CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc
Confidence 4799999999999999864 2477888888762 1 25789999986532 12345566666665
Q ss_pred cCCeEEEEecc
Q 032355 76 KVGGIAVYDNT 86 (142)
Q Consensus 76 ~~gG~iv~dn~ 86 (142)
++.+++.+.
T Consensus 135 --~~~v~i~e~ 143 (204)
T TIGR03587 135 --NRYILIAEY 143 (204)
T ss_pred --CcEEEEEEe
Confidence 345555444
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00042 Score=50.33 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=56.2
Q ss_pred EEEeCChhHHHHHHHHHHHcC--------C-CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHh
Q 032355 3 TAIDVNRETYEIGLPIIKKAG--------V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 73 (142)
Q Consensus 3 ~~ve~~~~~~~~a~~~~~~~~--------~-~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~ 73 (142)
.+||.-++.++.+++|+++.- + ..+..++.||+...-+. ..+||.|++.+... +..+.++.
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-------~a~YDaIhvGAaa~---~~pq~l~d 181 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-------QAPYDAIHVGAAAS---ELPQELLD 181 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-------cCCcceEEEccCcc---ccHHHHHH
Confidence 689999999999999998753 2 24689999999876442 57899999998643 34466778
Q ss_pred cccCCeEEEEe
Q 032355 74 LLKVGGIAVYD 84 (142)
Q Consensus 74 ~L~~gG~iv~d 84 (142)
.|++||.+++-
T Consensus 182 qL~~gGrllip 192 (237)
T KOG1661|consen 182 QLKPGGRLLIP 192 (237)
T ss_pred hhccCCeEEEe
Confidence 88888888763
No 192
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00061 Score=54.86 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC------------cHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------YCNYH 68 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~------------~~~~~ 68 (142)
+++++|++|++++.|++++....- .+..++..|+.+++.+..+....+..||++++|.+... -..++
T Consensus 321 ~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l 399 (482)
T KOG2352|consen 321 QITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVAL 399 (482)
T ss_pred ceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHH
Confidence 478999999999999999976543 47899999999999887542123568999999865322 13456
Q ss_pred HHHHhcccCCeEEEEecccc
Q 032355 69 ERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 69 ~~~~~~L~~gG~iv~dn~~~ 88 (142)
..+...|.|.|+++.+-+..
T Consensus 400 ~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 400 QPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred HHHhhccCccceEEEEEecC
Confidence 66778999999998765543
No 193
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.25 E-value=0.0021 Score=49.66 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=48.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERL 71 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~----~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~ 71 (142)
+|+++|+++.+++.|+++....+. ..++++..+|..+. .++||+|++-.. .......++.+
T Consensus 168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l 237 (315)
T PLN02585 168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------SGKYDTVTCLDVLIHYPQDKADGMIAHL 237 (315)
T ss_pred EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------CCCcCEEEEcCEEEecCHHHHHHHHHHH
Confidence 489999999999999999877532 24688998886542 468999985321 11122344444
Q ss_pred HhcccCCeEEEE
Q 032355 72 MKLLKVGGIAVY 83 (142)
Q Consensus 72 ~~~L~~gG~iv~ 83 (142)
.. +.+||+++.
T Consensus 238 ~~-l~~g~liIs 248 (315)
T PLN02585 238 AS-LAEKRLIIS 248 (315)
T ss_pred Hh-hcCCEEEEE
Confidence 43 457777764
No 194
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.25 E-value=0.00058 Score=50.33 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=55.2
Q ss_pred CEEEEeCChhHHHHHHHHH------HH-----cCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC-----CCcCc
Q 032355 1 MITAIDVNRETYEIGLPII------KK-----AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNY 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~------~~-----~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~-----~~~~~ 64 (142)
+|+++|+++.+++.+.+.. .. .--...+++.++|..++-.... ..++||+|+--+ +...-
T Consensus 67 ~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~----~~~~fD~VyDra~~~Alpp~~R 142 (226)
T PRK13256 67 KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN----NLPVFDIWYDRGAYIALPNDLR 142 (226)
T ss_pred cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc----ccCCcCeeeeehhHhcCCHHHH
Confidence 5899999999999985521 00 0012479999999988521100 125799987322 22234
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 032355 65 CNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
..|.+.+.++|+|||.++.-..
T Consensus 143 ~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 143 TNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred HHHHHHHHHHhCCCcEEEEEEE
Confidence 6788999999999999887544
No 195
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.20 E-value=0.0014 Score=47.68 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=47.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcccCCCceeEEEEcCCCc-------C-------c
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD-------N-------Y 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~--l~~~~~~~~~~~~fD~IfiD~~~~-------~-------~ 64 (142)
+|++||+++. .+. ..++++++|+.+. ++.+... ...+.||+|++|.... + .
T Consensus 78 ~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~ 144 (209)
T PRK11188 78 RVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLV 144 (209)
T ss_pred eEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCCCCCCEEecCCCCccCCChHHHHHHHHHHH
Confidence 4789999881 122 3589999998763 2322110 0256899999986310 1 1
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 032355 65 CNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~d 84 (142)
...++.+.+.|+|||.+++.
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 34677888999999999885
No 196
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.16 E-value=0.0015 Score=46.35 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=46.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcccCCCceeEEEEcCCCc-------C-------c
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD-------N-------Y 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~--l~~~~~~~~~~~~fD~IfiD~~~~-------~-------~ 64 (142)
+|+++|+++.+ +. ++++++++|+.+. +..+.+. ...+.||+|++|+... . .
T Consensus 59 ~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~ 125 (188)
T TIGR00438 59 RVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLV 125 (188)
T ss_pred eEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHH
Confidence 38999999865 12 3578888887542 1111100 1245799999986311 1 1
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 032355 65 CNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~d 84 (142)
...++.+.+.|+|||.+++.
T Consensus 126 ~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 126 ELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHccCCCEEEEE
Confidence 45778888999999999885
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.11 E-value=0.0013 Score=50.41 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=43.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|+|+++++.|++.+.. .+++++++++..++...+.+ .-.++|.|++|..
T Consensus 46 ~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~---~~~~vDgIl~DLG 99 (296)
T PRK00050 46 RLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE---GLGKVDGILLDLG 99 (296)
T ss_pred EEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc---CCCccCEEEECCC
Confidence 489999999999999998865 36899999999988655521 0127999999864
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.11 E-value=0.0017 Score=45.80 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=47.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHHHH-HHHhhcccCCCceeEEEE-cCC--CcCcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSENEGSFDYAFV-DAD--KDNYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~~~~v~~~~~da~~~l-~~~~~~~~~~~~fD~Ifi-D~~--~~~~~~~~~~~~~~ 74 (142)
+|+..|.++ .++..+.|++.++ ...++++..-+..+-. +... ...+||+|+. |.- ...++.+++.+..+
T Consensus 71 ~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~~~~D~IlasDv~Y~~~~~~~L~~tl~~l 145 (173)
T PF10294_consen 71 RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EPHSFDVILASDVLYDEELFEPLVRTLKRL 145 (173)
T ss_dssp EEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S-SSBSEEEEES--S-GGGHHHHHHHHHHH
T ss_pred eEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----ccccCCEEEEecccchHHHHHHHHHHHHHH
Confidence 478999999 9999999999877 4567888877654422 2221 2468999985 542 34567888888899
Q ss_pred ccCCeEEEEe
Q 032355 75 LKVGGIAVYD 84 (142)
Q Consensus 75 L~~gG~iv~d 84 (142)
|+++|.+++-
T Consensus 146 l~~~~~vl~~ 155 (173)
T PF10294_consen 146 LKPNGKVLLA 155 (173)
T ss_dssp BTT-TTEEEE
T ss_pred hCCCCEEEEE
Confidence 9998886553
No 199
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.07 E-value=0.0039 Score=47.73 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=44.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|+++|+|+.+++.+++++...+..++++++++|+.+.- ...||.|+.+.+.
T Consensus 60 ~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---------~~~~d~VvaNlPY 111 (294)
T PTZ00338 60 KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---------FPYFDVCVANVPY 111 (294)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc---------ccccCEEEecCCc
Confidence 489999999999999999988776678999999998741 2469999998874
No 200
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0014 Score=53.04 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=66.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|++-|.++..++..++|++.++.++.++..++||..++-... .....||+|=+|+-- ....|++.+.+.++.||+
T Consensus 136 ~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---~~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGL 211 (525)
T KOG1253|consen 136 QVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---MVAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGL 211 (525)
T ss_pred hhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---ccccccceEecCCCC-CccHHHHHHHHHhhcCCE
Confidence 3678899999999999999999999999999999988765431 113689999999852 347799999999999999
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
+++
T Consensus 212 L~v 214 (525)
T KOG1253|consen 212 LCV 214 (525)
T ss_pred EEE
Confidence 986
No 201
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0031 Score=46.22 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=62.3
Q ss_pred EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcH---HHHHHHHhcccCCe
Q 032355 3 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC---NYHERLMKLLKVGG 79 (142)
Q Consensus 3 ~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~---~~~~~~~~~L~~gG 79 (142)
+-||.+|+.++.-+.+-- ...++|.+..|-..+.++.+. ++.||=|+-|.-.+.|+ .+.+.+.++|+|+|
T Consensus 128 ~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~-----d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 128 WIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLP-----DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred EEEecCHHHHHHHHhccc--ccccceEEEecchHhhhcccc-----ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCc
Confidence 457888888877665321 124689999999999999884 67799999998755555 45677889999999
Q ss_pred EEEEeccccccc
Q 032355 80 IAVYDNTLWGGT 91 (142)
Q Consensus 80 ~iv~dn~~~~g~ 91 (142)
++-+-|-+..+.
T Consensus 201 v~SyfNg~~~~~ 212 (271)
T KOG1709|consen 201 VFSYFNGLGADN 212 (271)
T ss_pred eEEEecCcccch
Confidence 998876665443
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.99 E-value=0.0071 Score=49.64 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=60.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE---cCCCc--------CcHHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD--------NYCNYHER 70 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi---D~~~~--------~~~~~~~~ 70 (142)
++++|+....+..|.+...+.++. ++.++.+|+..+...+ +++++|.|++ ||+.. -.+.+++.
T Consensus 374 ~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~ 447 (506)
T PRK01544 374 FIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKI 447 (506)
T ss_pred EEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----CcccccEEEEECCCCCCCCCCccccccCHHHHHH
Confidence 689999999999998888888885 6899999887665554 2567999987 66521 14788999
Q ss_pred HHhcccCCeEEEE
Q 032355 71 LMKLLKVGGIAVY 83 (142)
Q Consensus 71 ~~~~L~~gG~iv~ 83 (142)
+.+.|+|||.|-+
T Consensus 448 ~~~~Lk~gG~i~~ 460 (506)
T PRK01544 448 LQDKLKDNGNLVF 460 (506)
T ss_pred HHHhcCCCCEEEE
Confidence 9999999999865
No 203
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.84 E-value=0.00086 Score=48.37 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=46.7
Q ss_pred CEEEEeCChhHHHHHHH--------------HHHH-----cC--------CCCcEEEEEccHHHHHHHHhhcccCCCcee
Q 032355 1 MITAIDVNRETYEIGLP--------------IIKK-----AG--------VDHKINFIESEALSVLDQLLKYSENEGSFD 53 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~--------------~~~~-----~~--------~~~~v~~~~~da~~~l~~~~~~~~~~~~fD 53 (142)
+|++.|+|+.+++.|++ ..++ .| +.++|+|...|..+. .. ..+.||
T Consensus 66 ~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~------~~~~fD 138 (196)
T PF01739_consen 66 RILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DP------PFGRFD 138 (196)
T ss_dssp EEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------------EE
T ss_pred EEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-Cc------ccCCcc
Confidence 47899999999999987 1111 11 124689999998871 11 157899
Q ss_pred EEEEcCCC-----cCcHHHHHHHHhcccCCeEEEEe
Q 032355 54 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 54 ~IfiD~~~-----~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
+|||=--. ..-...++.+...|+|||.++.-
T Consensus 139 ~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 139 LIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 99984321 11256778888999999999874
No 204
>PRK06202 hypothetical protein; Provisional
Probab=96.80 E-value=0.0022 Score=46.97 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=47.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~~~~~~~L 75 (142)
+|+++|+++++++.|+++.... ++++..+++... +. .+++||+|++-.... .....++.+.+.+
T Consensus 90 ~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~ 158 (232)
T PRK06202 90 EVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALA 158 (232)
T ss_pred EEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------cCCCccEEEECCeeecCChHHHHHHHHHHHHhc
Confidence 4899999999999999876433 355665555432 21 156899999864321 1345777887887
Q ss_pred cCCeEEEEeccc
Q 032355 76 KVGGIAVYDNTL 87 (142)
Q Consensus 76 ~~gG~iv~dn~~ 87 (142)
+ + .+++.+..
T Consensus 159 ~-~-~~~i~dl~ 168 (232)
T PRK06202 159 R-R-LVLHNDLI 168 (232)
T ss_pred C-e-eEEEeccc
Confidence 6 4 44444333
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.79 E-value=0.0035 Score=47.87 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=50.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc---------------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--------------- 64 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~-~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--------------- 64 (142)
+++++|+++.++..|+-|+...|... ...+..+|....-... ...+||+|+..||....
T Consensus 79 ~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~ 153 (311)
T PF02384_consen 79 NIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKK 153 (311)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTT
T ss_pred eeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-----cccccccccCCCCccccccccccccccccccc
Confidence 36899999999999999987766543 3578999876532110 13589999999863221
Q ss_pred ---------HHHHHHHHhcccCCeEE
Q 032355 65 ---------CNYHERLMKLLKVGGIA 81 (142)
Q Consensus 65 ---------~~~~~~~~~~L~~gG~i 81 (142)
..++..+...|++||.+
T Consensus 154 ~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 154 YFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp CSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred cCCCccchhhhhHHHHHhhcccccce
Confidence 24778888999999964
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.71 E-value=0.00061 Score=51.93 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=52.9
Q ss_pred CEEEEeCChhHHHHHHHHH------------------HHc-----C-------CCCcEEEEEccHHHHHHHHhhcccCCC
Q 032355 1 MITAIDVNRETYEIGLPII------------------KKA-----G-------VDHKINFIESEALSVLDQLLKYSENEG 50 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~------------------~~~-----~-------~~~~v~~~~~da~~~l~~~~~~~~~~~ 50 (142)
+|+++|+|+.+++.|++.+ ... | +..+|+|...|..+. ... ..+
T Consensus 149 ~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~----~~~ 222 (287)
T PRK10611 149 KVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAK--QWA----VPG 222 (287)
T ss_pred EEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCC--CCc----cCC
Confidence 4899999999999998841 110 1 224677887777652 110 136
Q ss_pred ceeEEEEcC-----CCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 51 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 51 ~fD~IfiD~-----~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.||+|||=. +...-...++.+.+.|+|||++++.
T Consensus 223 ~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 223 PFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 899999832 1122456788888999999998774
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.0067 Score=44.39 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCc-eeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~-fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
+|+.+|.....+...++-.+.+|++ +++++++.+.++-++ .+ ||+|.+=+-. ....+++.+.+++++||
T Consensus 93 ~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D~vtsRAva-~L~~l~e~~~pllk~~g 162 (215)
T COG0357 93 KVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYDVVTSRAVA-SLNVLLELCLPLLKVGG 162 (215)
T ss_pred cEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCcEEEeehcc-chHHHHHHHHHhcccCC
Confidence 4789999999999999999999996 799999999887432 23 9999987754 35778899999999988
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
.+++
T Consensus 163 ~~~~ 166 (215)
T COG0357 163 GFLA 166 (215)
T ss_pred cchh
Confidence 8754
No 208
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.64 E-value=0.015 Score=40.97 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=55.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----cHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----~~~~~~~~~~~L 75 (142)
.++++|.|++.+....+.. +.++++.||+...-..+.+ ..+..||.|++.-+..+ -.++++.+...|
T Consensus 75 ~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl 146 (194)
T COG3963 75 SLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRL 146 (194)
T ss_pred ceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh--cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhc
Confidence 3689999999998877644 4577999999875433432 13567999998765433 356788889999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
.+||.++-
T Consensus 147 ~~gg~lvq 154 (194)
T COG3963 147 PAGGPLVQ 154 (194)
T ss_pred CCCCeEEE
Confidence 99999875
No 209
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0027 Score=43.81 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~~~~~~~L 75 (142)
.|+++|++|++++++++|.+.+.+ ++++.++|..+.... .+.||.+++|++.. .--++++.++++.
T Consensus 73 ~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~fDtaviNppFGTk~~~aDm~fv~~al~~~ 143 (185)
T KOG3420|consen 73 SVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIFDTAVINPPFGTKKKGADMEFVSAALKVA 143 (185)
T ss_pred eEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeEeeEEecCCCCcccccccHHHHHHHHHHH
Confidence 378999999999999999999877 479999998875432 57899999999732 2344566666554
Q ss_pred c
Q 032355 76 K 76 (142)
Q Consensus 76 ~ 76 (142)
+
T Consensus 144 ~ 144 (185)
T KOG3420|consen 144 S 144 (185)
T ss_pred H
Confidence 3
No 210
>PRK05785 hypothetical protein; Provisional
Probab=96.61 E-value=0.0056 Score=44.97 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=46.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|.|++|++.|++. ...+++|+.++ + + ++++||+|++-.. ..+....++.+.+.|+|
T Consensus 76 ~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~-----~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 76 YVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-F-----RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred EEEEECCCHHHHHHHHhc---------cceEEechhhC-C-C-----CCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 489999999999999863 13567888653 2 2 2678999997542 23457788999999999
Q ss_pred Ce
Q 032355 78 GG 79 (142)
Q Consensus 78 gG 79 (142)
..
T Consensus 140 ~~ 141 (226)
T PRK05785 140 QV 141 (226)
T ss_pred ce
Confidence 54
No 211
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.55 E-value=0.015 Score=44.61 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=56.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~~ 77 (142)
.|+++|.++....+.+..-+-.|...++..+ .-..+-++. .+.||+||+=+- .......+..+.+.|++
T Consensus 140 ~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~ 211 (315)
T PF08003_consen 140 SVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP 211 (315)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCC
Confidence 3789998888877755544445544333333 233444443 368999998652 33456778899999999
Q ss_pred CeEEEEeccccccc
Q 032355 78 GGIAVYDNTLWGGT 91 (142)
Q Consensus 78 gG~iv~dn~~~~g~ 91 (142)
||.+|.+.....|.
T Consensus 212 gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 212 GGELVLETLVIDGD 225 (315)
T ss_pred CCEEEEEEeeecCC
Confidence 99999998877663
No 212
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.54 E-value=0.019 Score=48.52 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=41.3
Q ss_pred cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC--CcC----cHHHHHHHHhcccCCeEEEE
Q 032355 27 KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 27 ~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~--~~~----~~~~~~~~~~~L~~gG~iv~ 83 (142)
..+++.||+.+.++.+ ...+|.+|+|+- ..+ -.++|..+.++++|||.++.
T Consensus 148 ~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 4668889999999876 457999999973 333 25788999999999999985
No 213
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.54 E-value=0.0033 Score=48.16 Aligned_cols=58 Identities=12% Similarity=0.358 Sum_probs=37.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHH-HHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~-~~~~~v~~~~~da~-~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+.++.|+|+..++.|++|++++ ++.++|+++...-. .++..+. ...+.||+.+|.||.
T Consensus 128 ~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~---~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 128 SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII---QPNERFDFTMCNPPF 187 (299)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST---T--S-EEEEEE----
T ss_pred eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh---cccceeeEEecCCcc
Confidence 3689999999999999999999 99999999876533 2333332 124689999998863
No 214
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0071 Score=49.23 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=56.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCcee-EEEEcCCCcCcHH-HHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-YAFVDADKDNYCN-YHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD-~IfiD~~~~~~~~-~~~~~~~~L~~g 78 (142)
+|++||++|+.++-|+.|.+.+|.+ +.+|+.|-|.+.++.+... .-..=+ ++++|++...... +++.+...-++-
T Consensus 407 ~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~ 483 (534)
T KOG2187|consen 407 RVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPR 483 (534)
T ss_pred ceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCcc
Confidence 5899999999999999999999996 7999999999998887421 012345 7788998766543 444444444344
Q ss_pred eE
Q 032355 79 GI 80 (142)
Q Consensus 79 G~ 80 (142)
-+
T Consensus 484 rl 485 (534)
T KOG2187|consen 484 RL 485 (534)
T ss_pred ce
Confidence 33
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.49 E-value=0.0058 Score=47.66 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=55.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC-----cCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~-----~~~~~~~~~~~~~L 75 (142)
+|++||- .+|++.|++.++.+++.+||+++.|...++ ++ +++.|+|+..+-- +...+-+-.+.+.|
T Consensus 202 ~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~DviISEPMG~mL~NERMLEsYl~Ark~l 272 (517)
T KOG1500|consen 202 KVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKVDVIISEPMGYMLVNERMLESYLHARKWL 272 (517)
T ss_pred eEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhccEEEeccchhhhhhHHHHHHHHHHHhhc
Confidence 4788885 579999999999999999999999999876 33 6789999988731 11122222345899
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|.|.+.-
T Consensus 273 ~P~GkMfP 280 (517)
T KOG1500|consen 273 KPNGKMFP 280 (517)
T ss_pred CCCCcccC
Confidence 99998753
No 216
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.49 E-value=0.0016 Score=48.09 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=36.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCC--------CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~--------~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|.||-.+...+.-++++.- ..+++++++|+.++|+ . +..+||+|++||-
T Consensus 99 ~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~-----~~~s~DVVY~DPM 160 (234)
T PF04445_consen 99 KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-Q-----PDNSFDVVYFDPM 160 (234)
T ss_dssp -EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-C-----HSS--SEEEE--S
T ss_pred eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-h-----cCCCCCEEEECCC
Confidence 589999999999998876665321 1389999999999987 2 2679999999984
No 217
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.47 E-value=0.0048 Score=47.91 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=57.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC--CcCcHHHHHHHH----hc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLM----KL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~--~~~~~~~~~~~~----~~ 74 (142)
+|++||.+.-+ +.|++.+..+++++.|++++|.+.++ .+ +.++.|+|+..=- .-.|+..++.++ +.
T Consensus 85 ~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkw 156 (346)
T KOG1499|consen 85 KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKW 156 (346)
T ss_pred eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec-----CccceeEEeehhhhHHHHHhhhhhhhhhhhhhc
Confidence 58899966554 99999999999999999999999886 34 2478999987521 111223333332 58
Q ss_pred ccCCeEEEEecccc
Q 032355 75 LKVGGIAVYDNTLW 88 (142)
Q Consensus 75 L~~gG~iv~dn~~~ 88 (142)
|+|||++.-+.+..
T Consensus 157 L~~~G~i~P~~a~l 170 (346)
T KOG1499|consen 157 LKEGGLIYPDRATL 170 (346)
T ss_pred cCCCceEccccceE
Confidence 99999998765443
No 218
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.44 E-value=0.0052 Score=43.83 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=42.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKV 77 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~ 77 (142)
++++|.++++++.|++ .+++++.+|+.+.++.+ .+++||+|++-... .+....++.+.+.+++
T Consensus 39 ~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 39 GYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 6899999999988864 24688889987644322 25689999986532 2345556666555543
No 219
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.28 E-value=0.011 Score=44.19 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=46.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC---CcCcHHHHHHHHhccc--
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK-- 76 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~---~~~~~~~~~~~~~~L~-- 76 (142)
.+.+|+.|+-.+..+++++. ..++++++.|+.+.+..+.- +.++==+|+||++ +..|....+.+...++
T Consensus 82 l~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allP---P~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~ 155 (245)
T PF04378_consen 82 LVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLP---PPERRGLVLIDPPYEQKDDYQRVVDALAKALKRW 155 (245)
T ss_dssp EEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-
T ss_pred EEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCC---CCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhc
Confidence 57899999999999988865 35899999999998877631 2345669999996 4456666666665444
Q ss_pred CCeEEEE
Q 032355 77 VGGIAVY 83 (142)
Q Consensus 77 ~gG~iv~ 83 (142)
+.|++++
T Consensus 156 ~~G~~~i 162 (245)
T PF04378_consen 156 PTGVYAI 162 (245)
T ss_dssp TTSEEEE
T ss_pred CCcEEEE
Confidence 6777543
No 220
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.21 E-value=0.016 Score=41.62 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=47.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhcccCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~~g 78 (142)
..++|+|++.+..+.+ ..+.++++|+.+.|..+ ++++||.|++--.- .+....++++++.- ..
T Consensus 39 g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f-----~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVg-r~ 104 (193)
T PF07021_consen 39 GYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADF-----PDQSFDYVILSQTLQAVRRPDEVLEEMLRVG-RR 104 (193)
T ss_pred EEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhC-----CCCCccEEehHhHHHhHhHHHHHHHHHHHhc-Ce
Confidence 5799999998876654 34789999999998877 37899999985431 12334444444332 34
Q ss_pred eEEEEecc
Q 032355 79 GIAVYDNT 86 (142)
Q Consensus 79 G~iv~dn~ 86 (142)
++|.+-|.
T Consensus 105 ~IVsFPNF 112 (193)
T PF07021_consen 105 AIVSFPNF 112 (193)
T ss_pred EEEEecCh
Confidence 55555554
No 221
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.15 E-value=0.0082 Score=44.58 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=54.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcccCCCceeEEEE-----cCCCcCcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFV-----DADKDNYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~-l~~~~~~~~~~~~fD~Ifi-----D~~~~~~~~~~~~~~~~ 74 (142)
+|.++|-+|.+++..+++..-.. +++....-|...- ++.- ...+++|+|.+ --........++.+.++
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 47899999999999999775543 3555554444321 1111 12567887743 22344567788999999
Q ss_pred ccCCeEEEEeccc
Q 032355 75 LKVGGIAVYDNTL 87 (142)
Q Consensus 75 L~~gG~iv~dn~~ 87 (142)
|+|||.|++.+--
T Consensus 173 lKPGG~llfrDYg 185 (264)
T KOG2361|consen 173 LKPGGSLLFRDYG 185 (264)
T ss_pred hCCCcEEEEeecc
Confidence 9999999986443
No 222
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.12 E-value=0.0024 Score=47.36 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=47.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC--cCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~--~~~~~~~~~~~~~L~~g 78 (142)
+|+++|++++|++.|++.....-..-..++...+..+++ +.+++.|+|.+--.. =+.+.+++.+.+.||+.
T Consensus 57 ~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-------g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 57 EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-------GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKD 129 (261)
T ss_pred hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-------CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCC
Confidence 489999999999999875432211111233333333332 236789999864321 13577889999999876
Q ss_pred e-EEEE
Q 032355 79 G-IAVY 83 (142)
Q Consensus 79 G-~iv~ 83 (142)
| ++.+
T Consensus 130 Gg~iav 135 (261)
T KOG3010|consen 130 GGLIAV 135 (261)
T ss_pred CCEEEE
Confidence 6 5544
No 223
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.06 E-value=0.0084 Score=44.13 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L 75 (142)
+++.+|. |++++.+++ .+||+++-||..+ .+ +. +|++++-.- ......+++.+.+.|
T Consensus 126 ~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al 187 (241)
T PF00891_consen 126 RATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PL------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAAL 187 (241)
T ss_dssp EEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CC------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHS
T ss_pred cceeecc-Hhhhhcccc-------ccccccccccHHh---hh------cc-ccceeeehhhhhcchHHHHHHHHHHHHHh
Confidence 3567786 888888888 5799999999874 22 34 999998432 223456788999999
Q ss_pred cCC--eEEEEecccc
Q 032355 76 KVG--GIAVYDNTLW 88 (142)
Q Consensus 76 ~~g--G~iv~dn~~~ 88 (142)
+|| |.|++.+.+.
T Consensus 188 ~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 188 KPGKDGRLLIIEMVL 202 (241)
T ss_dssp EECTTEEEEEEEEEE
T ss_pred CCCCCCeEEEEeecc
Confidence 998 8887766654
No 224
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.05 E-value=0.035 Score=42.75 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=44.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|.|+++++.|++.++.. .+++++++++..++...+.+. ...++|.|++|-.
T Consensus 46 ~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~vDgIl~DLG 101 (305)
T TIGR00006 46 RLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKIDGILVDLG 101 (305)
T ss_pred EEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCcccEEEEecc
Confidence 4899999999999999998764 468999999998876555321 1257999999864
No 225
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.78 E-value=0.015 Score=43.94 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=49.2
Q ss_pred CEEEEeCChhHHHHHHHH------H-H------------Hc--C-------CCCcEEEEEccHHHHHHHHhhcccCCCce
Q 032355 1 MITAIDVNRETYEIGLPI------I-K------------KA--G-------VDHKINFIESEALSVLDQLLKYSENEGSF 52 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~------~-~------------~~--~-------~~~~v~~~~~da~~~l~~~~~~~~~~~~f 52 (142)
+|++.|+|..+++.|+.- . + +. | +...|+|...|...--. . .+.|
T Consensus 131 ~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~------~~~f 203 (268)
T COG1352 131 KILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F------LGKF 203 (268)
T ss_pred EEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c------cCCC
Confidence 478999999999998751 1 1 11 1 11245666666543211 1 4679
Q ss_pred eEEEEcC-----CCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 53 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 53 D~IfiD~-----~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
|+|||=- +.+.-...++.....|+|||++++-
T Consensus 204 D~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 204 DLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred CEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9999832 1112356788888999999999873
No 226
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.76 E-value=0.055 Score=40.47 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=39.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|+++|+|+.+++.+++++.. .++++++++|+.++- -..||.|+...+.
T Consensus 53 ~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 53 KVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVD---------LPEFNKVVSNLPY 101 (258)
T ss_pred EEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCC---------chhceEEEEcCCc
Confidence 489999999999999998855 257999999998641 2358999998764
No 227
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.72 E-value=0.077 Score=38.94 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=54.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-CcHHHHHHHHhccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-~~~~~~~~~~~~L~ 76 (142)
.+++.|+++..++.|.+++.+.++.+++++..+|.+..+. .+..+|.|.+-+--. -..++++.-.+.|+
T Consensus 42 ~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------~~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 42 TAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-------LEDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred eEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-------ccCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 3689999999999999999999999999999999976653 245799999876421 23456666666664
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.61 E-value=0.034 Score=45.72 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=39.0
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
++++|+|+..+..|+.++...+. ..+++..+|.......... ...+.||+|+..||.
T Consensus 66 i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 66 IYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPPY 122 (524)
T ss_pred eeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc--cccCcccEEEeCCCc
Confidence 68999999999999999988762 2366777765532110000 013579999999863
No 229
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.57 E-value=0.44 Score=35.76 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=66.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC---cCcHHHHHHHHhccc-
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK- 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~---~~~~~~~~~~~~~L~- 76 (142)
++..+|..|+=+...+++|.. ..++++..+|....+.... -+.+.=-+|+||++. ..|....+.+.+.++
T Consensus 112 Rl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kR 185 (279)
T COG2961 112 RLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALAEAYKR 185 (279)
T ss_pred eeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHHHHHHh
Confidence 467899999999999999963 3689999999988776642 134567899999984 356666666555443
Q ss_pred -CCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhc
Q 032355 77 -VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 120 (142)
Q Consensus 77 -~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (142)
++|+... | +|.. ..+.++.|.+.+..
T Consensus 186 f~~g~yai----W-----YPik---------~r~~~~~f~~~L~~ 212 (279)
T COG2961 186 FATGTYAI----W-----YPIK---------DRRQIRRFLRALEA 212 (279)
T ss_pred hcCceEEE----E-----Eeec---------chHHHHHHHHHHhh
Confidence 5666533 3 3321 23467888887765
No 230
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.50 E-value=0.0057 Score=45.28 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=51.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-cCC--CcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD--KDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-D~~--~~~~~~~~~~~~~~L~~ 77 (142)
+++++|+|..|++.|.+ + |+-+ ++.++++..+++.. .+++||+|.. |.- ......+|-.+..+|+|
T Consensus 149 ~ltGvDiS~nMl~kA~e---K-g~YD--~L~~Aea~~Fl~~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~ 217 (287)
T COG4976 149 RLTGVDISENMLAKAHE---K-GLYD--TLYVAEAVLFLEDL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAP 217 (287)
T ss_pred hccCCchhHHHHHHHHh---c-cchH--HHHHHHHHHHhhhc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCC
Confidence 36899999999999986 2 2222 56777887777654 3678999974 221 12345566677789999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
||.+.++
T Consensus 218 gGlfaFS 224 (287)
T COG4976 218 GGLFAFS 224 (287)
T ss_pred CceEEEE
Confidence 9999874
No 231
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.064 Score=42.17 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=56.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh-hccc--CCCceeEEEEcCCCcC---------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL-KYSE--NEGSFDYAFVDADKDN--------------- 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~-~~~~--~~~~fD~IfiD~~~~~--------------- 63 (142)
|++=|.++..+...+..+.+.+- ..+.+...++..+ +... .... ....||-|++|.++..
T Consensus 186 vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w 263 (375)
T KOG2198|consen 186 VVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGW 263 (375)
T ss_pred eEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhh
Confidence 67788999999888887766654 3455655555432 2110 0000 1357999999986432
Q ss_pred -----------cHHHHHHHHhcccCCeEEEEecccc
Q 032355 64 -----------YCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 -----------~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
-..++...+++|++||.+|+.++..
T Consensus 264 ~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 264 KTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 0234556678999999999998876
No 232
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.18 Score=37.92 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=45.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCC--ceeEEEEcCCCcCcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~--~fD~IfiD~~~~~~~~~~~~~~ 72 (142)
+|+++|+|+.+++..++.+. ..+++++++||+++. .+ .. +++.|+..-|..--..++..+.
T Consensus 54 ~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~--d~------~~l~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 54 RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF--DF------PSLAQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC--cc------hhhcCCCEEEEcCCCcccHHHHHHHH
Confidence 48999999999999999776 346899999999885 12 22 6899999887543344444333
No 233
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.19 E-value=0.13 Score=39.53 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=44.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+++++|.||++++.|++.+...+ +|+++++++..++...+.+. ..+++|-|++|-.
T Consensus 50 ~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~vDGiL~DLG 105 (314)
T COG0275 50 RLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGKVDGILLDLG 105 (314)
T ss_pred eEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCceeEEEEecc
Confidence 47999999999999999998765 69999999987765554321 2368999999864
No 234
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.2 Score=35.89 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=54.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc---C---------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------- 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~---~--------------- 63 (142)
..+.|+||++++..++..+.++. +++.++.|....+. .++.|+++..++.- .
T Consensus 71 ~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG 140 (209)
T KOG3191|consen 71 YLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGG 140 (209)
T ss_pred EEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCccEEEECCCcCcCCcccchhHHHHHHHhcC
Confidence 46899999999999999888765 58999999877654 57899999887521 0
Q ss_pred ------cHHHHHHHHhcccCCeEEEEe
Q 032355 64 ------YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 ------~~~~~~~~~~~L~~gG~iv~d 84 (142)
...+++.+-.+|.|.|++..-
T Consensus 141 ~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 141 KDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred cchHHHHHHHHhhhhhhcCcCceEEee
Confidence 133455566788899987553
No 235
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.10 E-value=0.029 Score=41.37 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=51.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE--------cCCC------cCcHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV--------DADK------DNYCNY 67 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi--------D~~~------~~~~~~ 67 (142)
.+++|+||.|+++|.+ +.. .-+++.+|.-+-++. .++.||-++. ++++ .....|
T Consensus 75 wiGvDiSpsML~~a~~--~e~----egdlil~DMG~Glpf------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~F 142 (270)
T KOG1541|consen 75 WIGVDISPSMLEQAVE--REL----EGDLILCDMGEGLPF------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRF 142 (270)
T ss_pred EEeecCCHHHHHHHHH--hhh----hcCeeeeecCCCCCC------CCCccceEEEeeeeeeecccCccccChHHHHHHH
Confidence 5899999999999997 332 147888888877764 2689999874 3322 223456
Q ss_pred HHHHHhcccCCeEEEEe
Q 032355 68 HERLMKLLKVGGIAVYD 84 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~d 84 (142)
|..+...|++|+.-|+.
T Consensus 143 F~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 143 FGTLYSCLKRGARAVLQ 159 (270)
T ss_pred hhhhhhhhccCceeEEE
Confidence 77788888988887763
No 236
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.09 E-value=0.12 Score=38.53 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=41.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCcee---EEEEcCCCcCcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD---YAFVDADKDNYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD---~IfiD~~~~~~~~~~~~~~ 72 (142)
+|+++|+|+.+++.+++++.. ..+++++++|+.+.-. ..|| +|+.+.+.......+..+.
T Consensus 53 ~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 53 KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL---------PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh---------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 379999999999999988743 3579999999976421 2355 8887776433333444443
No 237
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.04 E-value=0.059 Score=41.96 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=52.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC---------CCCcEEEEEccHHH-HHHHHhhcccC-CCceeEEEEcCCC-------c
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLLKYSEN-EGSFDYAFVDADK-------D 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~---------~~~~v~~~~~da~~-~l~~~~~~~~~-~~~fD~IfiD~~~-------~ 62 (142)
+++++|++++.++.|++..+.+. ..-...++.+|+.. -+.... .+ ..+||+|=+--.. .
T Consensus 87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~---~~~~~~FDvVScQFalHY~Fese~ 163 (331)
T PF03291_consen 87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL---PPRSRKFDVVSCQFALHYAFESEE 163 (331)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS---SSTTS-EEEEEEES-GGGGGSSHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc---cccCCCcceeehHHHHHHhcCCHH
Confidence 36899999999999999883321 12357889998863 222211 11 2589999774321 1
Q ss_pred CcHHHHHHHHhcccCCeEEEEe
Q 032355 63 NYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 63 ~~~~~~~~~~~~L~~gG~iv~d 84 (142)
....+++.+...|+|||+++.-
T Consensus 164 ~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 164 KARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEE
Confidence 2345788888999999999863
No 238
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.61 E-value=0.15 Score=33.39 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=51.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|++++.+++..+.+++ +|...-+.....+..+.+..+. .+..+|+||--.. ....++.+.++|+++|.
T Consensus 16 ~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---~~~~~~~~~~~l~~~G~ 84 (130)
T PF00107_consen 16 KVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---SGDTLQEAIKLLRPGGR 84 (130)
T ss_dssp EEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---SHHHHHHHHHHEEEEEE
T ss_pred EEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---cHHHHHHHHHHhccCCE
Confidence 47899999998888765 5533222223334555565552 2347999995443 36788999999999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
+++=...
T Consensus 85 ~v~vg~~ 91 (130)
T PF00107_consen 85 IVVVGVY 91 (130)
T ss_dssp EEEESST
T ss_pred EEEEEcc
Confidence 9875443
No 239
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.60 E-value=0.059 Score=40.91 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=44.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|+||.+++..++.++.+..+.+.++++||..+. +-..||.++...+
T Consensus 82 kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 82 KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFDGCVSNLP 132 (315)
T ss_pred eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---------CCcccceeeccCC
Confidence 58999999999999999999888889999999999874 1357999998655
No 240
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.41 E-value=0.019 Score=37.53 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=28.3
Q ss_pred ceeEEEEcCC---------CcCcHHHHHHHHhcccCCeEEEEeccccccc
Q 032355 51 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 91 (142)
Q Consensus 51 ~fD~IfiD~~---------~~~~~~~~~~~~~~L~~gG~iv~dn~~~~g~ 91 (142)
+||+|++=+- ......+|+.+..+|+|||.+|.+-=-|..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY 50 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY 50 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence 4899987431 1235778999999999999999986666443
No 241
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.33 E-value=0.13 Score=38.70 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=42.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~ 72 (142)
+|+++|+|+++++.+++++.. ++++++++|+.++- +. +-.+|.|+..++......++..+.
T Consensus 66 ~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~--~~-----~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 66 KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD--LS-----ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC--HH-----HcCcceEEEeCCccchHHHHHHHH
Confidence 589999999999999987742 57999999998751 21 111588888877433344444444
No 242
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.20 E-value=0.19 Score=39.94 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCCCcEEEEEccHHHHHHHHhhcccCCCceeEEE-EcCC----CcCcHHHHHHHHhcccCCeEEEEecccc
Q 032355 23 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDAD----KDNYCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 23 ~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~If-iD~~----~~~~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
++ +++++++++..+.+.+. +++++|.+. +|.. ...+.+.++.+.+.++|||.|+.-++..
T Consensus 273 ~~-drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CC-CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 44 79999999999999876 367899875 5652 2346677888889999999999977764
No 243
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.18 E-value=0.05 Score=41.98 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=39.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 59 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~ 59 (142)
+++++|.||++++.|++.++.. .+++.+++++..++-..+... .....+|-|++|-
T Consensus 46 ~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL~DL 101 (310)
T PF01795_consen 46 RLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINKVDGILFDL 101 (310)
T ss_dssp EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-EEEEEEE-
T ss_pred eEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCccCEEEEcc
Confidence 4899999999999999987654 579999999987765544321 0135899999985
No 244
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.11 E-value=0.35 Score=35.12 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=45.5
Q ss_pred EEEEeCChhHHHHHHHHHHH-------cCC-CCcEEEEEccHHHH--HHHHhhcccCCCceeEEEEcCCC--cCcHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKK-------AGV-DHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK--DNYCNYHE 69 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~-------~~~-~~~v~~~~~da~~~--l~~~~~~~~~~~~fD~IfiD~~~--~~~~~~~~ 69 (142)
+++||+.+...+.|+...+. .|. ..++++.+||..+. .+... ..-|+||++... +.....+.
T Consensus 69 ~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~------s~AdvVf~Nn~~F~~~l~~~L~ 142 (205)
T PF08123_consen 69 SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW------SDADVVFVNNTCFDPDLNLALA 142 (205)
T ss_dssp EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG------HC-SEEEE--TTT-HHHHHHHH
T ss_pred EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh------cCCCEEEEeccccCHHHHHHHH
Confidence 78999999999998765443 344 35799999998653 33321 358999998642 11222334
Q ss_pred HHHhcccCCeEEEEeccc
Q 032355 70 RLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 70 ~~~~~L~~gG~iv~dn~~ 87 (142)
.....|++|..||.-.-+
T Consensus 143 ~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 143 ELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHTTS-TT-EEEESS-S
T ss_pred HHHhcCCCCCEEEECCCc
Confidence 444678999998874333
No 245
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.88 E-value=1.7 Score=32.87 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=64.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC---CCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~---~~~~~~~~~~~~~~~L~~ 77 (142)
+|++.|.|+.|... +++-|+ +++ +..++-+ .+.+||+|-+=- .......+++.+.+.|+|
T Consensus 118 ~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~-------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p 180 (265)
T PF05219_consen 118 EVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQ-------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKP 180 (265)
T ss_pred eEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhc-------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCC
Confidence 47889999988544 334444 344 3344422 156899997621 123357789999999999
Q ss_pred CeEEEEecccc-cccc-------cCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEE
Q 032355 78 GGIAVYDNTLW-GGTV-------AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 127 (142)
Q Consensus 78 gG~iv~dn~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (142)
+|.++.--++. +-.| ..|.+..+-.... -.+.+..|. .+..-.+|+..
T Consensus 181 ~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~GF~v~ 236 (265)
T PF05219_consen 181 NGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPAGFEVE 236 (265)
T ss_pred CCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhcCCEEE
Confidence 99998755542 2222 2222222222222 556788888 67777888764
No 246
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.67 E-value=0.047 Score=41.32 Aligned_cols=58 Identities=31% Similarity=0.468 Sum_probs=42.0
Q ss_pred CcEEEEEccHHHHHHHHhhcccCCCceeEE----EEcCCCcCcHHHHHHHHhcccCCeEEEEecccc
Q 032355 26 HKINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 26 ~~v~~~~~da~~~l~~~~~~~~~~~~fD~I----fiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
++..+..||..+.-..-. ..++||.| |+|.. .+..+|++.+..+|+|||+.|--.-+.
T Consensus 144 ~~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~GPLl 205 (270)
T PF07942_consen 144 SNLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINFGPLL 205 (270)
T ss_pred CceeEecCccEEecCCcc----cCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEecCCcc
Confidence 467778888776532210 13689999 68986 468999999999999999988654443
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.60 E-value=0.45 Score=35.09 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=46.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHH-HHHHHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY-HERLMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~-~~~~~~~L~~gG~ 80 (142)
|++||.+|......-...++ .++|--+.+||...-... .--+..|+||.|-..++-.+. ...+...|++||.
T Consensus 101 VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~----~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 101 VYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR----MLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGH 173 (229)
T ss_dssp EEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT----TTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh----cccccccEEEecCCChHHHHHHHHHHHhhccCCcE
Confidence 78999999665444433322 357888999997532111 113589999999877655444 3445579999998
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
++.
T Consensus 174 ~~i 176 (229)
T PF01269_consen 174 LII 176 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 248
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=93.43 E-value=1.2 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=51.2
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHHhcccCCe
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGG 79 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~~~L~~gG 79 (142)
|.-+|-++...+..++.++..|+. .+. ...+..+.+..+. ...||+|++|...+ ...++++.+...- ++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-~v~-~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-EVT-TASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQIN-PSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-EEE-EESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHT-TTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-EEE-EECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccc-ccc
Confidence 567899999999999999977652 233 5566777776664 45799999996433 3456677665544 455
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
.+++
T Consensus 73 ~ii~ 76 (112)
T PF00072_consen 73 PIIV 76 (112)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5443
No 249
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=0.065 Score=44.13 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=56.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEc-----CCCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD-----~~~~~~~~~~~~~~~~L 75 (142)
++++||.||.++-..+. ....+.+++|+++.+|..++-+ +.++.|+++.. ++-+.-++.++-+.+.|
T Consensus 397 klyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a-------p~eq~DI~VSELLGSFGDNELSPECLDG~q~fL 468 (649)
T KOG0822|consen 397 KLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA-------PREQADIIVSELLGSFGDNELSPECLDGAQKFL 468 (649)
T ss_pred EEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC-------chhhccchHHHhhccccCccCCHHHHHHHHhhc
Confidence 47899999999988776 4445567899999999998842 13789999643 12233577888889999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+|+|+-|-
T Consensus 469 kpdgIsIP 476 (649)
T KOG0822|consen 469 KPDGISIP 476 (649)
T ss_pred CCCceEcc
Confidence 99998764
No 250
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=93.18 E-value=0.41 Score=30.27 Aligned_cols=75 Identities=21% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEe--cccccccccCCCCC----CCCCCCcchHHHHHHHHHHhhcCC
Q 032355 49 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD--NTLWGGTVAVPEEQ----VPDHFRGSSRQAILDLNRSLADDP 122 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~d--n~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~ 122 (142)
+..||++++|+...--++.+-++...++-||+++.- +.-......++... .|.. .....-++.|.+.|.+++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~--~~~~~F~~rf~~~L~~~~ 86 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT--DVTPRFIRRFIRSLQSDP 86 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS---B--HHHHHHHHHHHCCST
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC--cccHHHHHHHHHHHHHCc
Confidence 567999999998777888999999999999998762 21111111111000 0111 113445788888888888
Q ss_pred Cee
Q 032355 123 RVQ 125 (142)
Q Consensus 123 ~~~ 125 (142)
++.
T Consensus 87 ~i~ 89 (92)
T PF08351_consen 87 GII 89 (92)
T ss_dssp TS-
T ss_pred CCc
Confidence 754
No 251
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.12 E-value=1.2 Score=32.33 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=51.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~-----~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~~ 73 (142)
+|+++|+|-...+-+... .++|.++.|+..+ .++.+++ .-+-=+|++|++.. ....-++...+
T Consensus 99 kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~----~y~kIfvilDsdHs~~hvLAel~~~~p 168 (237)
T COG3510 99 KVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKN----EYPKIFVILDSDHSMEHVLAELKLLAP 168 (237)
T ss_pred eEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhc----CCCcEEEEecCCchHHHHHHHHHHhhh
Confidence 477888876655443221 3689999998753 2333321 22233455677643 34455677778
Q ss_pred cccCCeEEEEecccccccc
Q 032355 74 LLKVGGIAVYDNTLWGGTV 92 (142)
Q Consensus 74 ~L~~gG~iv~dn~~~~g~~ 92 (142)
+|..|-.+++.+....+..
T Consensus 169 llsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 169 LLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred HhhcCceEEEecccccCCC
Confidence 9999999999887776653
No 252
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.87 E-value=0.5 Score=36.91 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=50.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCC-----CcEEEEEccHHHH-HHHHhhcccCCCceeEEEEcCCC-------cCcHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADK-------DNYCNY 67 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~-----~~v~~~~~da~~~-l~~~~~~~~~~~~fD~IfiD~~~-------~~~~~~ 67 (142)
.++++|+..-.++.|++.-+..--. -.+.|+.||...- |..+.+. .+.+||+|=+-=.. ..-.-.
T Consensus 142 ~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~--~dp~fDivScQF~~HYaFetee~ar~~ 219 (389)
T KOG1975|consen 142 EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF--KDPRFDIVSCQFAFHYAFETEESARIA 219 (389)
T ss_pred ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC--CCCCcceeeeeeeEeeeeccHHHHHHH
Confidence 3689999999999998866543221 2489999998642 2222110 13349999543211 111234
Q ss_pred HHHHHhcccCCeEEEE
Q 032355 68 HERLMKLLKVGGIAVY 83 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~ 83 (142)
+.-+.+.|+|||++|.
T Consensus 220 l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 220 LRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHHHhhcCCCcEEEE
Confidence 5666789999999876
No 253
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=92.61 E-value=0.5 Score=36.16 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=38.0
Q ss_pred cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHH-HHHhcccCCeEEEEeccc
Q 032355 27 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 27 ~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~-~~~~~L~~gG~iv~dn~~ 87 (142)
+|.|+-.+..+.|+.-.. ..+.||+||+-.. +..++. .+.++++|+|+|+++++-
T Consensus 201 kVhFLPld~~~~L~~K~k---y~~~Fd~ifvs~s---~vh~L~p~l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSK---YQNFFDLIFVSCS---MVHFLKPELFQALAPDAVLVVETAK 256 (289)
T ss_pred EEEEeCchHHHHHhhHHh---hcCCCCEEEEhhh---hHhhcchHHHHHhCCCCEEEEEcch
Confidence 466666666666655322 2578999999775 333443 466788999999999874
No 254
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=92.16 E-value=0.18 Score=39.84 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEE-EcCC--CcCcHHHHHHHHhcccCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDAD--KDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~If-iD~~--~~~~~~~~~~~~~~L~~g 78 (142)
+++++.++..+..+.......++.++-.+..++..+-. . ++..||.+. +|.. .+.....+.++.+.++||
T Consensus 136 ~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--f-----edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 136 VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--F-----EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--C-----CccccCcEEEEeecccCCcHHHHHHHHhcccCCC
Confidence 56788888888888888888888777777666655421 1 257899995 5654 234577888999999999
Q ss_pred eEEEEeccc
Q 032355 79 GIAVYDNTL 87 (142)
Q Consensus 79 G~iv~dn~~ 87 (142)
|+.++....
T Consensus 209 G~~i~~e~i 217 (364)
T KOG1269|consen 209 GLFIVKEWI 217 (364)
T ss_pred ceEEeHHHH
Confidence 999875444
No 255
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.01 E-value=1.4 Score=36.22 Aligned_cols=88 Identities=22% Similarity=0.362 Sum_probs=60.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-------------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------- 62 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------------------- 62 (142)
+++.|+++.....|+-|+--.|....+...++|......... . ...+.||+|+..||..
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~-~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~ 294 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-K-DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFF 294 (489)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-c-CCccceeEEEeCCCCCccccccccccccccccccc
Confidence 578999999999999999888886446777777654321100 0 0136799998766421
Q ss_pred ---------CcHHHHHHHHhcccCCe---EEEEeccccccc
Q 032355 63 ---------NYCNYHERLMKLLKVGG---IAVYDNTLWGGT 91 (142)
Q Consensus 63 ---------~~~~~~~~~~~~L~~gG---~iv~dn~~~~g~ 91 (142)
.+..+++++...|+||| +++.++++++|.
T Consensus 295 ~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~ 335 (489)
T COG0286 295 YGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG 335 (489)
T ss_pred cCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC
Confidence 12567888889999865 566778887663
No 256
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.96 E-value=0.49 Score=36.21 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=47.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|..+|+|+..+....+..+..|+. +++.+.-|.+..+++-. .++||+...||+.
T Consensus 177 ~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kFDvfiTDPpe 231 (354)
T COG1568 177 RIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKFDVFITDPPE 231 (354)
T ss_pred eEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhCCeeecCchh
Confidence 4678999999999999999999985 69999999988777643 4689999999974
No 257
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=1.7 Score=35.80 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=42.2
Q ss_pred CCceeEEEEcCC--CcCcHHH---HHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCC
Q 032355 49 EGSFDYAFVDAD--KDNYCNY---HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 122 (142)
Q Consensus 49 ~~~fD~IfiD~~--~~~~~~~---~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (142)
.+.||+|++|.. ..+-+.+ +..+...-+|+-++.+-.++.+. +..+.+++||+.+..++
T Consensus 464 ~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~---------------dsv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN---------------DSVDQLKKFNRALADHS 527 (587)
T ss_pred hcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc---------------HHHHHHHHHHHHHhcCC
Confidence 568999999974 2233334 44455667899888887777532 17788999999998866
No 258
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=91.38 E-value=0.3 Score=38.19 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=48.2
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE-----cCCCcCcHHHHHHHHhccc
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-----DADKDNYCNYHERLMKLLK 76 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-----D~~~~~~~~~~~~~~~~L~ 76 (142)
|.+++.+...+-.++.++. .| |+.+-||...-. ..-|+||+ |=.......+++.|++-|+
T Consensus 202 ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~daI~mkWiLhdwtDedcvkiLknC~~sL~ 266 (342)
T KOG3178|consen 202 IKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDAIWMKWILHDWTDEDCVKILKNCKKSLP 266 (342)
T ss_pred CceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCeEEEEeecccCChHHHHHHHHHHHHhCC
Confidence 4566777777766666664 33 667777765432 23568886 2223446889999999999
Q ss_pred CCeEEEE-eccccc
Q 032355 77 VGGIAVY-DNTLWG 89 (142)
Q Consensus 77 ~gG~iv~-dn~~~~ 89 (142)
|||.|++ +++.-+
T Consensus 267 ~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 267 PGGKIIVVENVTPE 280 (342)
T ss_pred CCCEEEEEeccCCC
Confidence 9998765 555543
No 259
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.01 E-value=0.88 Score=35.56 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=49.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
+|+.+|.+++.++.|++.... +.+..... +..+.+..+. .+..+|++|--.. ....++.+.+.++|||
T Consensus 195 ~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g~D~vie~~G---~~~~~~~ai~~~r~gG 263 (350)
T COG1063 195 VVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRGADVVIEAVG---SPPALDQALEALRPGG 263 (350)
T ss_pred eEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCCCCEEEECCC---CHHHHHHHHHHhcCCC
Confidence 478899999999999985422 12222222 3333333331 1346999995443 5667889999999999
Q ss_pred EEEEeccc
Q 032355 80 IAVYDNTL 87 (142)
Q Consensus 80 ~iv~dn~~ 87 (142)
.++.-.+.
T Consensus 264 ~v~~vGv~ 271 (350)
T COG1063 264 TVVVVGVY 271 (350)
T ss_pred EEEEEecc
Confidence 99875444
No 260
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.79 E-value=0.65 Score=34.00 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=39.5
Q ss_pred CCceeEEEEcCC--CcCcHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeE
Q 032355 49 EGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 126 (142)
Q Consensus 49 ~~~fD~IfiD~~--~~~~~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (142)
++..|+++.--. -.+|..++.++.+.|++||.+.+-.+..+ -..+..|.+.+. .-+|..
T Consensus 120 ~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR------------------f~~~~~F~~~~~-~~GF~~ 180 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR------------------FENVKQFIKALK-KLGFKL 180 (219)
T ss_dssp TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHH-CTTEEE
T ss_pred CCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc------------------CcCHHHHHHHHH-HCCCeE
Confidence 567777765432 24689999999999999999877655431 124677877765 346655
Q ss_pred Ee
Q 032355 127 SH 128 (142)
Q Consensus 127 ~~ 128 (142)
.-
T Consensus 181 ~~ 182 (219)
T PF05148_consen 181 KS 182 (219)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.77 E-value=1.4 Score=34.51 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=47.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|++++++++..+.|++ +|.+ .++.+.-.+.++.. .+.||+|+.-.+ ...++...+.|++||.
T Consensus 192 ~Via~~~~~~K~e~a~~----lGAd---~~i~~~~~~~~~~~------~~~~d~ii~tv~----~~~~~~~l~~l~~~G~ 254 (339)
T COG1064 192 EVIAITRSEEKLELAKK----LGAD---HVINSSDSDALEAV------KEIADAIIDTVG----PATLEPSLKALRRGGT 254 (339)
T ss_pred eEEEEeCChHHHHHHHH----hCCc---EEEEcCCchhhHHh------HhhCcEEEECCC----hhhHHHHHHHHhcCCE
Confidence 58999999999999986 4433 33332222344444 234999997654 4457778899999999
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
++.-...
T Consensus 255 ~v~vG~~ 261 (339)
T COG1064 255 LVLVGLP 261 (339)
T ss_pred EEEECCC
Confidence 9875443
No 262
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=90.52 E-value=0.76 Score=33.43 Aligned_cols=84 Identities=15% Similarity=0.027 Sum_probs=50.1
Q ss_pred EeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhh-cccCCCceeEEEEcC-----CCcCcHHHHHHHHhcccCC
Q 032355 5 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK-YSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 5 ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~-~~~~~~~fD~IfiD~-----~~~~~~~~~~~~~~~L~~g 78 (142)
-|.++......+.++...++.+--.-+.-|+.+---.... .....+.||.||+=- +......+|+.+.++|++|
T Consensus 55 SD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 55 SDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred CCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4677777778888888877653222222233221000000 000145899999632 3344577888899999999
Q ss_pred eEEEEecccc
Q 032355 79 GIAVYDNTLW 88 (142)
Q Consensus 79 G~iv~dn~~~ 88 (142)
|++++-.-+.
T Consensus 135 G~L~~YGPF~ 144 (204)
T PF06080_consen 135 GLLFLYGPFN 144 (204)
T ss_pred CEEEEeCCcc
Confidence 9998865554
No 263
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=90.41 E-value=0.41 Score=37.65 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEEeCChhHHH-------HHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 2 ITAIDVNRETYE-------IGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 2 v~~ve~~~~~~~-------~a~~~~~~~~~~~~-v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
|++.|+|-.++. -.+.|+++.|.+++ +.+..+|...-. +. ....||.|++||+
T Consensus 233 viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~--~r----sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 233 VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP--LR----SNLKFDAIVCDPP 293 (421)
T ss_pred eeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc--hh----hcceeeEEEeCCC
Confidence 567777776665 46889999997654 788888876521 11 1468999999986
No 264
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.08 E-value=5.2 Score=31.11 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=52.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcccCCCceeEEEEcC-CCcC-----cHHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDA-DKDN-----YCNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~--~~~da~~~l~~~~~~~~~~~~fD~IfiD~-~~~~-----~~~~~~~~~~ 73 (142)
.+.+|+|.++++.+.+.+....+ +.+++ ++||..+.+..+... .......++|.=+ .-.| -..+++.+.+
T Consensus 107 Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 107 YYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred EEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 57899999999999999984444 34555 899887765544210 0022355665433 3233 3467778878
Q ss_pred -cccCCeEEEE
Q 032355 74 -LLKVGGIAVY 83 (142)
Q Consensus 74 -~L~~gG~iv~ 83 (142)
.|+|||.+++
T Consensus 185 ~~l~~~d~lLi 195 (319)
T TIGR03439 185 TALSPSDSFLI 195 (319)
T ss_pred hhCCCCCEEEE
Confidence 8999999877
No 265
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.71 E-value=2.2 Score=27.10 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=50.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcccCC-CceeEEEEcCCCcC--cHHHHHHHHhcccC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYAFVDADKDN--YCNYHERLMKLLKV 77 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~-l~~~~~~~~~~-~~fD~IfiD~~~~~--~~~~~~~~~~~L~~ 77 (142)
++++|.++.++..++......+. ..+.+..++.... ++ + .. ..||++........ ....+..+.+.++|
T Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (257)
T COG0500 75 VVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLP-F-----EDSASFDLVISLLVLHLLPPAKALRELLRVLKP 147 (257)
T ss_pred EEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCC-C-----CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCC
Confidence 56789999999886555433221 1278888887652 22 1 12 37999943332111 26678888899999
Q ss_pred CeEEEEecccc
Q 032355 78 GGIAVYDNTLW 88 (142)
Q Consensus 78 gG~iv~dn~~~ 88 (142)
+|.++......
T Consensus 148 ~g~~~~~~~~~ 158 (257)
T COG0500 148 GGRLVLSDLLR 158 (257)
T ss_pred CcEEEEEeccC
Confidence 99988765543
No 266
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=89.28 E-value=0.87 Score=30.31 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=30.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 37 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~ 37 (142)
+|+++|.+|++++.++++++..++. +++++.....+
T Consensus 24 ~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 24 RVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred EEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999999998875 58888876543
No 267
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=89.14 E-value=1.1 Score=33.87 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=47.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------c
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------Y 64 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----------------~ 64 (142)
+.++|+++.+++..+.|+... ++.+|..++...-. ...+|+++.++++.. +
T Consensus 25 v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~~gpPCq~fS~ag~~~~~~d~r~~L~ 92 (275)
T cd00315 25 VAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLTGGFPCQPFSIAGKRKGFEDTRGTLF 92 (275)
T ss_pred EEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEEeCCCChhhhHHhhcCCCCCchHHHH
Confidence 678999999999999887422 56677766543210 246999999886422 2
Q ss_pred HHHHHHHHhcccCCeEEEEeccc
Q 032355 65 CNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
..+++ +.+.++|. +++++|+-
T Consensus 93 ~~~~~-~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 93 FEIIR-ILKEKKPK-YFLLENVK 113 (275)
T ss_pred HHHHH-HHHhcCCC-EEEEEcCc
Confidence 23333 33455777 77888885
No 268
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.78 E-value=0.43 Score=37.19 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=43.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcccCCCceeEEEEcCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l-~~~~~~~~~~~~fD~IfiD~~ 60 (142)
.+++|++......|++|+.+.++++++.+++.+..+.+ ..... ...+..||++.+.++
T Consensus 129 f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~-~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 129 FLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALK-EESEIIYDFCMCNPP 187 (419)
T ss_pred eeeeeccccccchhhccccccccccceeeEEecchhhcchhhhc-cCccceeeEEecCCc
Confidence 36889999999999999999999999999998776532 22110 001345999999886
No 269
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.57 E-value=2.1 Score=33.17 Aligned_cols=72 Identities=11% Similarity=0.249 Sum_probs=53.8
Q ss_pred EeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEE-EEcCC----CcCcHHHHHHHHhcccCCe
Q 032355 5 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA-FVDAD----KDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 5 ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~I-fiD~~----~~~~~~~~~~~~~~L~~gG 79 (142)
++.+++.++.+++|++ ||.++++|..+.+..- +.+..|.+ ++|++ .......+..+.+-+.+|+
T Consensus 292 ~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k-----~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA 360 (414)
T COG5379 292 AYLDEGVYESIRQNLR------RVAIHHADIIELLAGK-----PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGA 360 (414)
T ss_pred hhhchhhHHHHHhhhh------heeeecccHHHHhccC-----CCCCcceEEEecchhhcccchHHHHHHHHhhccCCCc
Confidence 4567889999998884 5999999999988642 24567765 46764 2334567778888899999
Q ss_pred EEEEeccc
Q 032355 80 IAVYDNTL 87 (142)
Q Consensus 80 ~iv~dn~~ 87 (142)
.+|+....
T Consensus 361 ~VifRtaa 368 (414)
T COG5379 361 RVIFRTAA 368 (414)
T ss_pred EEEEeccc
Confidence 99987654
No 270
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.49 E-value=3.8 Score=30.03 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=50.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHH-HHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~-~~~~~~L~~gG 79 (142)
.+++||.+|......-...++ .+++--+.+||..--.... --+..|+||.|-..++-.+.+ .-+...|++||
T Consensus 102 ~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~----~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 102 RIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRH----LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred cEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhh----hcccccEEEEecCCchHHHHHHHHHHHhcccCC
Confidence 378999999877555444433 3578888999865322110 136799999999877655544 44556899999
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
.++.
T Consensus 175 ~~~i 178 (231)
T COG1889 175 YVVI 178 (231)
T ss_pred eEEE
Confidence 5443
No 271
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.49 E-value=0.58 Score=36.35 Aligned_cols=55 Identities=27% Similarity=0.495 Sum_probs=37.8
Q ss_pred EEEEEccHHHHHHHHhhcccCCCceeEE----EEcCCCcCcHHHHHHHHhcccCCeEEEEeccc
Q 032355 28 INFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 28 v~~~~~da~~~l~~~~~~~~~~~~fD~I----fiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
..+.-||..+.-..- ...+.||+| |+|... +..+|++.+...|+|||+.|--.-+
T Consensus 240 fsicaGDF~evy~~s----~~~~~~d~VvTcfFIDTa~-NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTS----SGAGSYDVVVTCFFIDTAH-NILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred ccccccceeEEecCc----CCCCccceEEEEEEeechH-HHHHHHHHHHHhccCCcEEEeccce
Confidence 344446665543321 113479999 578774 6899999999999999998864433
No 272
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=87.84 E-value=0.89 Score=37.33 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCceeEEEEcCCCc------CcHHHHHHHHhcccCCeEEEEecc
Q 032355 49 EGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 49 ~~~fD~IfiD~~~~------~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
+..||+|=.+.-.. .....+-++-++|+|||.+++.+.
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 67899998775322 234556666789999999998644
No 273
>PRK04148 hypothetical protein; Provisional
Probab=87.43 E-value=2.2 Score=28.98 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=39.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 75 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L 75 (142)
.|+++|+|++.++.|+++ .++++.+|..+.-..+ -+.+|+|+.==+.+.....+-.+.+.+
T Consensus 41 ~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~------y~~a~liysirpp~el~~~~~~la~~~ 101 (134)
T PRK04148 41 DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI------YKNAKLIYSIRPPRDLQPFILELAKKI 101 (134)
T ss_pred EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH------HhcCCEEEEeCCCHHHHHHHHHHHHHc
Confidence 489999999998888764 3688888887643333 357999996433333343343344443
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=86.86 E-value=0.6 Score=36.06 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=48.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC-Ce
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV-GG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~-gG 79 (142)
.|.++|.||..++..+++++.++..++..++.||-+..- +....|-|.+.--... .+-+..+.+.|+| ||
T Consensus 220 ~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--------~~~~AdrVnLGLlPSs-e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 220 TVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--------PRLRADRVNLGLLPSS-EQGWPTAIKALKPEGG 290 (351)
T ss_pred EEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--------ccccchheeecccccc-ccchHHHHHHhhhcCC
Confidence 378999999999999999999999889999988876542 2456788876532211 2223334455654 44
No 275
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.71 E-value=4.1 Score=31.89 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=45.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~d-a~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
+|+.+|.++..++.||+ + |...-...-+.+ ..++.....+. .....+|+.|--+ ....-++.+...+++||
T Consensus 196 ~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~-~g~~~~d~~~dCs---G~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 196 DVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKA-LGKKQPDVTFDCS---GAEVTIRAAIKATRSGG 267 (354)
T ss_pred cEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhh-ccccCCCeEEEcc---CchHHHHHHHHHhccCC
Confidence 58899999999999998 4 543211222212 22222222111 1235699998433 24556788889999999
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
.++.
T Consensus 268 t~vl 271 (354)
T KOG0024|consen 268 TVVL 271 (354)
T ss_pred EEEE
Confidence 9654
No 276
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=86.52 E-value=1.6 Score=32.57 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=40.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++|.+++..+.|++ .|..+. ...+ .+. + ..+|+|++-.+......+++.+.+.+++|++
T Consensus 13 ~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~~---~-------~~~DlvvlavP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 13 EVYGYDRDPETLEAALE----LGIIDE---ASTD-IEA---V-------EDADLVVLAVPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp EEEEE-SSHHHHHHHHH----TTSSSE---EESH-HHH---G-------GCCSEEEE-S-HHHHHHHHHHHHCGS-TTSE
T ss_pred EEEEEeCCHHHHHHHHH----CCCeee---ccCC-HhH---h-------cCCCEEEEcCCHHHHHHHHHHhhhhcCCCcE
Confidence 47899999999888763 455432 2222 222 2 3579999988777777888888888877755
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
++|
T Consensus 75 -v~D 77 (258)
T PF02153_consen 75 -VTD 77 (258)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 444
No 277
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.93 E-value=0.82 Score=34.43 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=27.4
Q ss_pred ceeEEEEc----C---CCcCcHHHHHHHHhcccCCeEEEEeccc
Q 032355 51 SFDYAFVD----A---DKDNYCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 51 ~fD~IfiD----~---~~~~~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
+||.|+.= + +...|...++.+.++|+|||.++.-.++
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 59998752 2 3345677777888999999999986555
No 278
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=85.73 E-value=10 Score=26.84 Aligned_cols=67 Identities=4% Similarity=-0.121 Sum_probs=42.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..+.. .+-....++.+.+..+. ..++|+|++|...+. -.+.++.+.+
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~~~~~~~-----~~~~DlvllD~~l~~~~~~~g~~~~~~l~~ 76 (216)
T PRK10840 5 NVIIADDHPIVLFGIRKSLEQIEWV-NVVGEFEDSTALINNLP-----KLDAHVLITDLSMPGDKYGDGITLIKYIKR 76 (216)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHHH-----hCCCCEEEEeCcCCCCCCCCHHHHHHHHHH
Confidence 3677888888888888888765421 23334466666666553 357999999975432 3445555544
No 279
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.42 E-value=5.6 Score=28.96 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=36.3
Q ss_pred CcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCCc--------Cc------HHHHHHHHhcccCCeEEEEecc
Q 032355 26 HKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKD--------NY------CNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 26 ~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~~--------~~------~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
..|.++++|..+ .+..+.+. ....++|+|..|+... .+ ...++.+...|+|||.+++...
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~-l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEA-LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCceEEeeeccCccHHHHHHHH-cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 358888888642 22222111 1234579999998531 11 2234556679999999998743
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.39 E-value=4 Score=31.37 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=42.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.|++ +|...-+.....+..+... ..+.+|+|| |+.- -...++.+.+.|++||.+
T Consensus 197 Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~-------~~g~~D~vi-d~~G--~~~~~~~~~~~l~~~G~i 262 (343)
T PRK09880 197 IVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA-------EKGYFDVSF-EVSG--HPSSINTCLEVTRAKGVM 262 (343)
T ss_pred EEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc-------cCCCCCEEE-ECCC--CHHHHHHHHHHhhcCCEE
Confidence 6788999998888765 4543212222223322221 124599988 5432 234577788999999998
Q ss_pred EEec
Q 032355 82 VYDN 85 (142)
Q Consensus 82 v~dn 85 (142)
+.-.
T Consensus 263 v~~G 266 (343)
T PRK09880 263 VQVG 266 (343)
T ss_pred EEEc
Confidence 8643
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.38 E-value=1.4 Score=32.91 Aligned_cols=62 Identities=8% Similarity=0.283 Sum_probs=45.4
Q ss_pred EEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHH-HHHHHHhhcccCCCceeEEEEcCCCcCcHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDADKDNYCN 66 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~-~~~~~v~~~~~da~-~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~ 66 (142)
.++.|+|+..++.|+.++..+ ++...|++....=. .+++... +..+.||+.+|+|+.....+
T Consensus 105 fvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gii---g~nE~yd~tlCNPPFh~s~~ 168 (292)
T COG3129 105 FVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGII---GKNERYDATLCNPPFHDSAA 168 (292)
T ss_pred eecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccc---cccceeeeEecCCCcchhHH
Confidence 478899999999999999887 77777888765433 3444432 22578999999998644333
No 282
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.92 E-value=7.8 Score=24.65 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=44.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
|+.+|.+++.++.+++ . .+.++.||+.+ .+.+. .-++.|.|++..+....--..-...+.+.|..
T Consensus 24 vvvid~d~~~~~~~~~----~----~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~ 90 (116)
T PF02254_consen 24 VVVIDRDPERVEELRE----E----GVEVIYGDATDPEVLERA-----GIEKADAVVILTDDDEENLLIALLARELNPDI 90 (116)
T ss_dssp EEEEESSHHHHHHHHH----T----TSEEEES-TTSHHHHHHT-----TGGCESEEEEESSSHHHHHHHHHHHHHHTTTS
T ss_pred EEEEECCcHHHHHHHh----c----ccccccccchhhhHHhhc-----CccccCEEEEccCCHHHHHHHHHHHHHHCCCC
Confidence 7889999999877765 1 26799999865 44443 13579999987764322222233345667777
Q ss_pred EEEEe
Q 032355 80 IAVYD 84 (142)
Q Consensus 80 ~iv~d 84 (142)
.+++.
T Consensus 91 ~ii~~ 95 (116)
T PF02254_consen 91 RIIAR 95 (116)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77764
No 283
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.21 E-value=6 Score=30.80 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=43.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.|++ +|...-+.....+..+.+..+. .+.+|+|| |+.- ....++.+.+.|+++|.+
T Consensus 219 Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~g~d~vi-d~~G--~~~~~~~~~~~l~~~G~i 286 (371)
T cd08281 219 VVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GGGVDYAF-EMAG--SVPALETAYEITRRGGTT 286 (371)
T ss_pred EEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CCCCCEEE-ECCC--ChHHHHHHHHHHhcCCEE
Confidence 7888999998887764 4543222222223333344332 23699888 5431 245677788999999998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.-
T Consensus 287 v~~ 289 (371)
T cd08281 287 VTA 289 (371)
T ss_pred EEE
Confidence 753
No 284
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.15 E-value=1.6 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 032355 66 NYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 66 ~~~~~~~~~L~~gG~iv~d 84 (142)
.++..+.++|+|||.+++.
T Consensus 37 ~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 37 EWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCeeEEEE
Confidence 4566677899999998774
No 285
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.75 E-value=7.1 Score=30.19 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=44.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++ +|...-+.....+..+.+..+. ....+|+|+ |+.- -...++.+...+++||.+
T Consensus 204 Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~g~d~vi-d~~g--~~~~~~~~~~~~~~~G~i 272 (358)
T TIGR03451 204 IIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGFGADVVI-DAVG--RPETYKQAFYARDLAGTV 272 (358)
T ss_pred EEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCCCCCEEE-ECCC--CHHHHHHHHHHhccCCEE
Confidence 7788888888888754 4543222333334444444432 134699887 6542 234567788899999998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.-
T Consensus 273 v~~ 275 (358)
T TIGR03451 273 VLV 275 (358)
T ss_pred EEE
Confidence 864
No 286
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=82.21 E-value=9 Score=28.18 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=44.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~~ 74 (142)
+|..||-++...+..+.+++..|+. + ....++.+.+..+. .. ||+|++|...+.. .+..+.+...
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~--v-~~~~~~~~a~~~~~-----~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE--V-DVAADGEEALEAAR-----EQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHh-----cC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999874 2 33334455555442 45 9999999865533 3344444433
No 287
>PTZ00357 methyltransferase; Provisional
Probab=81.83 E-value=2.5 Score=36.49 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=48.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHc-CC-------CCcEEEEEccHHHHHHHHhhccc----CCCceeEEEEcC-----CCcC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA-GV-------DHKINFIESEALSVLDQLLKYSE----NEGSFDYAFVDA-----DKDN 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~-~~-------~~~v~~~~~da~~~l~~~~~~~~----~~~~fD~IfiD~-----~~~~ 63 (142)
+|++||.||..+...+.+..+. .+ .++|+++.+|..++-.....+.. .-+++|+|+..- +-+.
T Consensus 730 rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNEL 809 (1072)
T PTZ00357 730 RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNEL 809 (1072)
T ss_pred EEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccC
Confidence 4799999988776665554321 22 35699999999987321000000 013799997531 2223
Q ss_pred cHHHHHHHHhcccC----CeE
Q 032355 64 YCNYHERLMKLLKV----GGI 80 (142)
Q Consensus 64 ~~~~~~~~~~~L~~----gG~ 80 (142)
-++-++-+.+.|++ +|+
T Consensus 810 SPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 810 SPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred CHHHHHHHHHhhhhhcccccc
Confidence 46677777777765 676
No 288
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=81.53 E-value=3.3 Score=28.98 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=46.3
Q ss_pred EEEeCChhHHHH---HHHHHHHcCCCCcEEE-EEccHHHHHHHHhhcccCCCceeEEEEcCCCcC---------------
Q 032355 3 TAIDVNRETYEI---GLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------- 63 (142)
Q Consensus 3 ~~ve~~~~~~~~---a~~~~~~~~~~~~v~~-~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--------------- 63 (142)
++.|...+..+. +.+|++.+.-. .+++ +--||.++-+.... ....||.|+..-|...
T Consensus 27 Ts~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~---~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~ 102 (166)
T PF10354_consen 27 TSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRL---KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRE 102 (166)
T ss_pred eecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccc---cCCcCCEEEEeCCCCCCCccchhHHHHHHHH
Confidence 455555444443 44677766332 3443 33466554333211 2578999987654322
Q ss_pred -cHHHHHHHHhcccCCeEEEEe
Q 032355 64 -YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 -~~~~~~~~~~~L~~gG~iv~d 84 (142)
...+|..+.++|+++|.|.+.
T Consensus 103 Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 103 LLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred HHHHHHHHHHHhcCCCCEEEEE
Confidence 246788888999999998875
No 289
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=25 Score=28.52 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHcCCCCcEEEEEccHHH----HHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHH---HhcccCC
Q 032355 8 NRETYEIGLPIIKKAGVDHKINFIESEALS----VLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERL---MKLLKVG 78 (142)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~v~~~~~da~~----~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~---~~~L~~g 78 (142)
.+.+.++.++|..+.+..--......|... .+.+++ .+.||+|++|..-+ .-..+|++. .+.++|+
T Consensus 141 RagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-----ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 141 RAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-----KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPD 215 (483)
T ss_pred ccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-----hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCC
Confidence 456777888888887664333444445433 344443 57899999998633 233455544 4678999
Q ss_pred eEEEEeccc
Q 032355 79 GIAVYDNTL 87 (142)
Q Consensus 79 G~iv~dn~~ 87 (142)
-+|.+-+..
T Consensus 216 ~vi~VmDas 224 (483)
T KOG0780|consen 216 EIIFVMDAS 224 (483)
T ss_pred eEEEEEecc
Confidence 888765444
No 290
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.01 E-value=11 Score=28.95 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=43.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++ .|...-+.....+..+ +..+. .+..+|.+++|+.- ....+..+.+.|++||.+
T Consensus 188 v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~-~~~~~----~~~~~d~~v~d~~G--~~~~~~~~~~~l~~~G~i 256 (347)
T PRK10309 188 VTAIDINSEKLALAKS----LGAMQTFNSREMSAPQ-IQSVL----RELRFDQLILETAG--VPQTVELAIEIAGPRAQL 256 (347)
T ss_pred EEEECCCHHHHHHHHH----cCCceEecCcccCHHH-HHHHh----cCCCCCeEEEECCC--CHHHHHHHHHHhhcCCEE
Confidence 5678888887776643 4542212222223222 22321 23468866678653 245678888999999999
Q ss_pred EEec
Q 032355 82 VYDN 85 (142)
Q Consensus 82 v~dn 85 (142)
+.-.
T Consensus 257 v~~G 260 (347)
T PRK10309 257 ALVG 260 (347)
T ss_pred EEEc
Confidence 8643
No 291
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=80.94 E-value=2.2 Score=29.90 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCcCcHHH----HHHHHhcccCCeEEEE
Q 032355 49 EGSFDYAFVDADKDNYCNY----HERLMKLLKVGGIAVY 83 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~----~~~~~~~L~~gG~iv~ 83 (142)
.++||+|++|||-- -.+. .+.+.-++++++.|+.
T Consensus 84 ~~~~d~vv~DPPFl-~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 84 KGKFDVVVIDPPFL-SEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CCCceEEEECCCCC-CHHHHHHHHHHHHHHhCccceEEE
Confidence 46899999999862 2222 2444446677777765
No 292
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=80.91 E-value=2.7 Score=29.31 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCc--------C------cHHHHHHHHhcccCCeEEEEe
Q 032355 50 GSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 50 ~~fD~IfiD~~~~--------~------~~~~~~~~~~~L~~gG~iv~d 84 (142)
++||+|++|.... . ....+..+.+.|+|||.+|+.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 6899999998211 0 122344556789999988775
No 293
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.90 E-value=8.9 Score=29.20 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=41.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++. +|...-+.....+..+.+..+. +..+|+|| |+... . .++.+.+.|+++|.+
T Consensus 183 Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd~vi-d~~g~--~-~~~~~~~~l~~~G~i 250 (345)
T cd08293 183 VVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVDVYF-DNVGG--E-ISDTVISQMNENSHI 250 (345)
T ss_pred EEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCceEEE-ECCCc--H-HHHHHHHHhccCCEE
Confidence 67777777766666542 4553222222234444444431 35699888 65422 2 357788999999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 251 v~ 252 (345)
T cd08293 251 IL 252 (345)
T ss_pred EE
Confidence 85
No 294
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=18 Score=25.74 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=39.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcccCCCceeEEEE-cCC--CcCcHHHHHHHHhccc
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD--KDNYCNYHERLMKLLK 76 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~--~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi-D~~--~~~~~~~~~~~~~~L~ 76 (142)
|...|-|++.++..++-.-.+-.+ .++.+.. ...+-.+... ....||+|++ |.- +.....+.+.++.+|+
T Consensus 57 v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlr--w~~~~aqsq~---eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~ 131 (201)
T KOG3201|consen 57 VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLR--WLIWGAQSQQ---EQHTFDIILAADCLFFDEHHESLVDTIKSLLR 131 (201)
T ss_pred EEEecCCHHHHHHHHHHHhcccccccceehhhH--HHHhhhHHHH---hhCcccEEEeccchhHHHHHHHHHHHHHHHhC
Confidence 455677777777776644333111 1221211 1111111110 1458999986 442 1223556778888999
Q ss_pred CCeEEE
Q 032355 77 VGGIAV 82 (142)
Q Consensus 77 ~gG~iv 82 (142)
|.|.-+
T Consensus 132 p~g~Al 137 (201)
T KOG3201|consen 132 PSGRAL 137 (201)
T ss_pred ccccee
Confidence 999843
No 295
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=79.93 E-value=5.7 Score=34.68 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=45.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 66 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~ 66 (142)
+|.-+|-|+-....|+.++++.|.. ++... +..+.+..+. ++..||+||+|.-.+.+..
T Consensus 668 ~iLlvddn~vn~~Va~~~l~~~g~~--~~~~~-sg~e~l~~~~----~~~~y~~ifmD~qMP~mDG 726 (786)
T KOG0519|consen 668 KILLVDDNPVNRKVATGMLKKLGAE--VTEVN-SGQEALDKLK----PPHSYDVIFMDLQMPEMDG 726 (786)
T ss_pred ceEEEecccchHHHHHHHHHHhCCe--eEeec-CcHHHHHhcC----CCCcccEEEEEcCCcccch
Confidence 4677899999999999999999864 44444 7777777663 3578999999986655443
No 296
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.49 E-value=7.5 Score=29.07 Aligned_cols=54 Identities=20% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCcEEEEEcc-HHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 25 DHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 25 ~~~v~~~~~d-a~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
++||.++... +..+-+.- -.+..|++++|...-.....+..+..++.++|.+++
T Consensus 122 d~rV~~~E~tN~r~l~~~~-----~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 122 DPRVIVLERTNVRYLTPED-----FTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCcEEEEecCChhhCCHHH-----cccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 4676666543 33322221 135789999998766566778888899999988875
No 297
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=79.06 E-value=1.7 Score=32.47 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=52.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhccc---C
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---V 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~---~ 77 (142)
+++++|+|+.+++..++.+. ..++++++++|+.++-.... .......|+...+......++..+...-+ .
T Consensus 54 ~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 54 RVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp EEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred cceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhhccccccc
Confidence 47999999999999998665 34689999999987521100 01356677776665333455555554222 3
Q ss_pred CeEEEEecccccccccCC
Q 032355 78 GGIAVYDNTLWGGTVAVP 95 (142)
Q Consensus 78 gG~iv~dn~~~~g~~~~~ 95 (142)
..++++..-...-.++.|
T Consensus 127 ~~~l~vq~e~a~rl~a~p 144 (262)
T PF00398_consen 127 RMVLMVQKEVAERLLAKP 144 (262)
T ss_dssp EEEEEEEHHHHHHHHTST
T ss_pred ceEEEEehhhhhhccCCC
Confidence 345555433333333433
No 298
>PRK13435 response regulator; Provisional
Probab=78.34 E-value=14 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=37.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|..+|-++......+..++..|. ++.....++.+.+..+. ...+|+|++|...
T Consensus 7 ~iliid~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~-----~~~~dliivd~~~ 60 (145)
T PRK13435 7 KVLIVEDEALIALELEKLVEEAGH--EVVGIAMSSEQAIALGR-----RRQPDVALVDVHL 60 (145)
T ss_pred eEEEEcCcHHHHHHHHHHHHhcCC--eEEEeeCCHHHHHHHhh-----hcCCCEEEEeeec
Confidence 366788888888888888877664 33334556666655442 3579999999743
No 299
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.97 E-value=19 Score=28.32 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=66.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcE---EEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKI---NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v---~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~ 77 (142)
++++||+|++..+.|++ +|..+-| ++. ....+.+.++. ++.+|.-|=-.. -.+.+++++...++
T Consensus 219 rIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~-~~i~evi~EmT-----dgGvDysfEc~G---~~~~m~~al~s~h~ 285 (375)
T KOG0022|consen 219 RIIGVDINPDKFEKAKE----FGATEFINPKDLK-KPIQEVIIEMT-----DGGVDYSFECIG---NVSTMRAALESCHK 285 (375)
T ss_pred cEEEEecCHHHHHHHHh----cCcceecChhhcc-ccHHHHHHHHh-----cCCceEEEEecC---CHHHHHHHHHHhhc
Confidence 58999999999999986 3432211 222 25778887763 678999983322 35566667766666
Q ss_pred C-eEEEEecccccccccC--CCCCC-----------CCCCCcchHHHHHHHHHHhhcCCCeeEEeeec
Q 032355 78 G-GIAVYDNTLWGGTVAV--PEEQV-----------PDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 131 (142)
Q Consensus 78 g-G~iv~dn~~~~g~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 131 (142)
| |.-++-.+.-+|.... |..-. ..+.+++..+-+.+|.....+-..|.|..+|+
T Consensus 286 GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f 353 (375)
T KOG0022|consen 286 GWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPF 353 (375)
T ss_pred CCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCH
Confidence 6 5544322222111100 00000 00111225556777776666666666666664
No 300
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=76.82 E-value=17 Score=25.90 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=38.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..||-++...+..+..++..+.. .+.....++.+.+..+. ...+|++|+|...+
T Consensus 3 ~IlIvdd~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~~-----~~~~dlv~lDi~~~ 58 (238)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDI-EIVGECSNAIEAIGAIH-----RLKPDVVFLDIQMP 58 (238)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCc-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCC
Confidence 3667888999999899988876621 12223456666666553 35799999997644
No 301
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.75 E-value=17 Score=27.29 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=41.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+++..+++..+.+++ +|...-+.....+..+.+..+. ...+|+|| |..- ...++...+.|+++|.+
T Consensus 171 vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~i 237 (329)
T cd08294 171 VIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-----PDGIDCYF-DNVG---GEFSSTVLSHMNDFGRV 237 (329)
T ss_pred EEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-----CCCcEEEE-ECCC---HHHHHHHHHhhccCCEE
Confidence 5667777777666654 4543222222234444444331 35699888 6542 24567888999999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 238 v~ 239 (329)
T cd08294 238 AV 239 (329)
T ss_pred EE
Confidence 75
No 302
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=76.26 E-value=2.6 Score=31.59 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=51.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC---CCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~---~~~~~~~~~~~~~~~L~~ 77 (142)
+++.+|.+..|++.++..- ..++ .+....+| .++|+ +. +.++|+|+.-- +....+..+-.|...|+|
T Consensus 97 kli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~D-EE~Ld-f~-----ens~DLiisSlslHW~NdLPg~m~~ck~~lKP 166 (325)
T KOG2940|consen 97 KLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGD-EEFLD-FK-----ENSVDLIISSLSLHWTNDLPGSMIQCKLALKP 166 (325)
T ss_pred heeeeecchHHHHHhhccC-CCce--EEEEEecc-hhccc-cc-----ccchhhhhhhhhhhhhccCchHHHHHHHhcCC
Confidence 4678899999998887521 1122 35556666 35565 42 67899998542 344567888999999999
Q ss_pred CeEEEEe
Q 032355 78 GGIAVYD 84 (142)
Q Consensus 78 gG~iv~d 84 (142)
+|++++.
T Consensus 167 Dg~Fias 173 (325)
T KOG2940|consen 167 DGLFIAS 173 (325)
T ss_pred CccchhH
Confidence 9998874
No 303
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.22 E-value=6.8 Score=29.40 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.1
Q ss_pred cEEEEEccH------HHHHHHHhhcccCCCceeEEEEcCCCc-----CcHHHH---------HHHHhcccCCeEEEEe
Q 032355 27 KINFIESEA------LSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYH---------ERLMKLLKVGGIAVYD 84 (142)
Q Consensus 27 ~v~~~~~da------~~~l~~~~~~~~~~~~fD~IfiD~~~~-----~~~~~~---------~~~~~~L~~gG~iv~d 84 (142)
.|.-+++|. ..++.-+ .+++.|+|++|+..+ ...+|+ +.....|+|||.+|+.
T Consensus 90 GV~qlq~DIT~~stae~Ii~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 90 GVIQLQGDITSASTAEAIIEHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred ceEEeecccCCHhHHHHHHHHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 456666664 3344444 256899999998532 223332 2333579999999875
No 304
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=75.96 E-value=12 Score=29.62 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=44.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHc----CCCCcEEEEE----ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~----~~~~~v~~~~----~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~ 72 (142)
+|+++|.+++..+.|++.+... |.. ..++. .+..+.+..+. ....+|+||.... ....++.+.
T Consensus 205 ~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~~~t----~g~g~D~vid~~g---~~~~~~~a~ 275 (410)
T cd08238 205 LLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLMELT----GGQGFDDVFVFVP---VPELVEEAD 275 (410)
T ss_pred eEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHHHHh----CCCCCCEEEEcCC---CHHHHHHHH
Confidence 3788999999999998853211 211 11221 23334444432 2346999986543 245677788
Q ss_pred hcccCCeEEEE
Q 032355 73 KLLKVGGIAVY 83 (142)
Q Consensus 73 ~~L~~gG~iv~ 83 (142)
+.++++|.+++
T Consensus 276 ~~l~~~G~~v~ 286 (410)
T cd08238 276 TLLAPDGCLNF 286 (410)
T ss_pred HHhccCCeEEE
Confidence 99997775543
No 305
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=75.51 E-value=16 Score=27.80 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=52.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh---hc--ccCCCceeEEEEcC-----CCcCcHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---KY--SENEGSFDYAFVDA-----DKDNYCNYHER 70 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~---~~--~~~~~~fD~IfiD~-----~~~~~~~~~~~ 70 (142)
+|+.+|.||-.++.++..+....- .+..++.+|..+.-.-+. .. ..-.++.=++++.. +.......+..
T Consensus 97 RVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~ 175 (267)
T PF04672_consen 97 RVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVAR 175 (267)
T ss_dssp EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHH
T ss_pred eEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHH
Confidence 488999999999999998876542 358999999876422111 00 01123444555432 22346778899
Q ss_pred HHhcccCCeEEEEecccc
Q 032355 71 LMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 71 ~~~~L~~gG~iv~dn~~~ 88 (142)
+...|.||..+++.....
T Consensus 176 l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 176 LRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHCCS-TT-EEEEEEEB-
T ss_pred HHHhCCCCceEEEEecCC
Confidence 999999999999887654
No 306
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.40 E-value=18 Score=27.96 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
|++++.+++..+.+++ .+|...-+..... +..+.+..+. ++.+|+|| |+.- ...++.+.+.|++||.
T Consensus 186 Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-----~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~ 253 (348)
T PLN03154 186 VVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF-----PEGIDIYF-DNVG---GDMLDAALLNMKIHGR 253 (348)
T ss_pred EEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC-----CCCcEEEE-ECCC---HHHHHHHHHHhccCCE
Confidence 5677777777666553 2455322222222 4444444431 34699888 6542 2467788899999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
++.-
T Consensus 254 iv~~ 257 (348)
T PLN03154 254 IAVC 257 (348)
T ss_pred EEEE
Confidence 8854
No 307
>PLN02740 Alcohol dehydrogenase-like
Probab=75.10 E-value=20 Score=28.10 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=41.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC-
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG- 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~--~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g- 78 (142)
|++++.+++..+.|++ +|...-+.... .+..+.+..+. .+.+|+|| |+.- -...++.+...+++|
T Consensus 226 Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~dvvi-d~~G--~~~~~~~a~~~~~~g~ 293 (381)
T PLN02740 226 IIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-----GGGVDYSF-ECAG--NVEVLREAFLSTHDGW 293 (381)
T ss_pred EEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CCCCCEEE-ECCC--ChHHHHHHHHhhhcCC
Confidence 7888999998888864 45532222221 12334444432 23699887 5432 245677777888886
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
|.++.
T Consensus 294 G~~v~ 298 (381)
T PLN02740 294 GLTVL 298 (381)
T ss_pred CEEEE
Confidence 87765
No 308
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=74.78 E-value=28 Score=24.92 Aligned_cols=75 Identities=7% Similarity=-0.073 Sum_probs=45.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEc----CCCcCcHHHHHHHHhcccC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD----ADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD----~~~~~~~~~~~~~~~~L~~ 77 (142)
+.-+|-++-..+-.+..+...+..-.+-....++.+.+..+. ..++|+|++| .+.++-.+.++.+.+. .|
T Consensus 3 ~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-----~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~-~p 76 (207)
T PRK15411 3 TIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-----SLRPSVVFINEDCFIHDASNSQRIKQIINQ-HP 76 (207)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-----ccCCCEEEEeCcccCCCCChHHHHHHHHHH-CC
Confidence 566787787888888888765432123344567777666542 4568999999 3333334555555432 34
Q ss_pred CeEEE
Q 032355 78 GGIAV 82 (142)
Q Consensus 78 gG~iv 82 (142)
+..++
T Consensus 77 ~~~ii 81 (207)
T PRK15411 77 NTLFI 81 (207)
T ss_pred CCeEE
Confidence 54443
No 309
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=74.57 E-value=3.5 Score=32.52 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=41.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
+|++||..+-. ..+.. .++|+.+.+|+..+.+. .+++|++++|... ......+.+.++|..|
T Consensus 235 ~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~~vDwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 235 FVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RKNVDWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred EEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CCCCCEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 48899955421 11222 36899999999887542 4689999999863 2345666677777655
No 310
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=74.43 E-value=25 Score=24.13 Aligned_cols=66 Identities=18% Similarity=0.051 Sum_probs=42.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++...+..+..++..|. .+.....++.+.+..+. ...+|+|++|...+. -.++++.+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~-----~~~~dlvi~d~~~~~~~g~~~~~~l~~ 69 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRK 69 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHH-----ccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 467788888888888888876543 23334567777666553 457999999975432 2344444443
No 311
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=73.65 E-value=15 Score=27.65 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------c
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------Y 64 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----------------~ 64 (142)
+.++|+++.+++.-+.|+. ....+|..++-..-. +. .+|+++.-+++.. +
T Consensus 25 ~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~ 91 (335)
T PF00145_consen 25 VWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLF 91 (335)
T ss_dssp EEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHH
T ss_pred EEEeecCHHHHHhhhhccc--------ccccccccccccccc----cc-cceEEEeccCCceEeccccccccccccchhh
Confidence 6799999999999999884 788888877543321 12 5999998665321 3
Q ss_pred HHHHHHHHhcccCCeEEEEeccc
Q 032355 65 CNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
..+++.+ +.++|. +++++|+-
T Consensus 92 ~~~~~~v-~~~~Pk-~~~~ENV~ 112 (335)
T PF00145_consen 92 FEFLRIV-KELKPK-YFLLENVP 112 (335)
T ss_dssp HHHHHHH-HHHS-S-EEEEEEEG
T ss_pred HHHHHHH-hhccce-EEEecccc
Confidence 3444433 456786 67778885
No 312
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.50 E-value=30 Score=26.16 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=40.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
|+++..+++..+.+++ +|...-+..... +..+.+... .++.+|+|| |+.- ...++.+.+.|+++|.
T Consensus 166 Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~-----~~~gvdvv~-d~~G---~~~~~~~~~~l~~~G~ 232 (325)
T TIGR02825 166 VVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA-----SPDGYDCYF-DNVG---GEFSNTVIGQMKKFGR 232 (325)
T ss_pred EEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh-----CCCCeEEEE-ECCC---HHHHHHHHHHhCcCcE
Confidence 5667777777666643 455322222221 233333333 134699888 6542 2346788899999999
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
++.-
T Consensus 233 iv~~ 236 (325)
T TIGR02825 233 IAIC 236 (325)
T ss_pred EEEe
Confidence 9853
No 313
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=73.45 E-value=14 Score=27.22 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=53.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCC------CCcEEEEEccHHHHHHHHhhcccCCCceeEEEE---cCCCc--------Cc
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD--------NY 64 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~------~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi---D~~~~--------~~ 64 (142)
+.+.|+.-...++.++.++.+.. -.++.+...++..+++.+.+ .++..-+|. |+-.. ..
T Consensus 87 iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~----kgqLskmff~fpdpHfk~~khk~rii~ 162 (249)
T KOG3115|consen 87 ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE----KGQLSKMFFLFPDPHFKARKHKWRIIT 162 (249)
T ss_pred eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh----hcccccceeecCChhHhhhhccceeec
Confidence 57888989999999998887751 24689999999999998853 344443332 33210 12
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 032355 65 CNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~ 83 (142)
..++....-+|++||.+..
T Consensus 163 ~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYT 181 (249)
T ss_pred hhHHHHHHhhhhcCceEEE
Confidence 3455555668999999875
No 314
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=73.41 E-value=25 Score=24.62 Aligned_cols=64 Identities=8% Similarity=0.017 Sum_probs=41.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
+|..+|-++...+..+..++..|.. +. ...++.+.+..+. ...+|+|++|...+. ..+.++.+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr 68 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMR--VF-EAETLQRGLLEAA-----TRKPDLIILDLGLPDGDGIEFIRDLR 68 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3677899999999999999877642 32 3445555555442 457999999975433 234444444
No 315
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=72.78 E-value=11 Score=23.06 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=36.9
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
+.+++..+..++.+ + +.+...+..+.++ ..|+||+-.+...+.+.++.+ ..+.++.++|.
T Consensus 33 ~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~advvilav~p~~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 33 SRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EADVVILAVKPQQLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp ESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEE
T ss_pred cCcHHHHHHHHHhh---c----cccccCChHHhhc----------cCCEEEEEECHHHHHHHHHHH-hhccCCCEEEE
Confidence 66776665554422 2 3444445555432 579999988777778888888 66677777654
No 316
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=72.34 E-value=33 Score=26.11 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+|+ |+.- -...++.+.+.|+++|.+
T Consensus 194 v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vl-d~~g--~~~~~~~~~~~l~~~g~~ 262 (345)
T cd08286 194 IIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGRGVDVVI-EAVG--IPATFELCQELVAPGGHI 262 (345)
T ss_pred EEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCCCCCEEE-ECCC--CHHHHHHHHHhccCCcEE
Confidence 5566666666555553 3543223333334333333332 245699887 5431 244578888999999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 263 v~ 264 (345)
T cd08286 263 AN 264 (345)
T ss_pred EE
Confidence 74
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=72.32 E-value=24 Score=27.67 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=42.2
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC-
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG- 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~--~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g- 78 (142)
|++++.+++..+.|++ +|...-+.... .+..+.+..+. .+.+|+|| |+.- ....+..+.+.+++|
T Consensus 221 vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vi-d~~G--~~~~~~~~l~~l~~g~ 288 (378)
T PLN02827 221 IIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----GGGADYSF-ECVG--DTGIATTALQSCSDGW 288 (378)
T ss_pred EEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----CCCCCEEE-ECCC--ChHHHHHHHHhhccCC
Confidence 6778888888777754 46532222221 13344444432 23699887 5432 344577788999998
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
|.++.
T Consensus 289 G~iv~ 293 (378)
T PLN02827 289 GLTVT 293 (378)
T ss_pred CEEEE
Confidence 99875
No 318
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=71.85 E-value=34 Score=26.51 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=39.8
Q ss_pred HHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 18 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 18 ~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.++.+|-+.-+.....|..+.+..+. .+..+|+|| |+. -.+.+......|+++|.++.-
T Consensus 182 ~~~~lGAd~vi~y~~~~~~~~v~~~t----~g~gvDvv~-D~v---G~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 182 LLKELGADHVINYREEDFVEQVRELT----GGKGVDVVL-DTV---GGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred HHHhcCCCEEEcCCcccHHHHHHHHc----CCCCceEEE-ECC---CHHHHHHHHHHhccCCEEEEE
Confidence 34456665556666777777666653 234799999 553 245667788889999998874
No 319
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=71.83 E-value=29 Score=24.35 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=41.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++...+..+..++..|. .+. ...++.+.+..+ ...+|+|++|...+. -.+.++.+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~------~~~~d~vl~d~~~~~~~g~~~~~~l~~ 68 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGF--NVI-VAHDGEQALDLL------DDSIDLLLLDVMMPKKNGIDTLKELRQ 68 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHh------hcCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 367789999999999998987654 233 345666665544 246999999975432 2344444443
No 320
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=71.41 E-value=35 Score=26.88 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=46.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE----cCCCcCcHHHHHHHHhccc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV----DADKDNYCNYHERLMKLLK 76 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi----D~~~~~~~~~~~~~~~~L~ 76 (142)
.|+-+|+|.+.+.+....+ ..|++....+...+-... .+.|+++- -+.+ ...-..+...+.++
T Consensus 193 ~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aDlvIgaVLIpgak-aPkLvt~e~vk~Mk 259 (371)
T COG0686 193 DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKADLVIGAVLIPGAK-APKLVTREMVKQMK 259 (371)
T ss_pred eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhccEEEEEEEecCCC-CceehhHHHHHhcC
Confidence 4778899988887776654 357888888887765544 46888863 2222 12334667778889
Q ss_pred CCeEEE
Q 032355 77 VGGIAV 82 (142)
Q Consensus 77 ~gG~iv 82 (142)
||++|+
T Consensus 260 pGsViv 265 (371)
T COG0686 260 PGSVIV 265 (371)
T ss_pred CCcEEE
Confidence 998875
No 321
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=70.86 E-value=9.8 Score=29.09 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=25.9
Q ss_pred CCceeEEEEcCC--CcCcHHHHHHHHhcccCCeEEEEeccc
Q 032355 49 EGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 49 ~~~fD~IfiD~~--~~~~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
+++.|+++..-. -.++..++..+.+.|++||.+-+-.+.
T Consensus 226 d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 344555443221 135678999999999999998665443
No 322
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.59 E-value=35 Score=24.15 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred CEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc------
Q 032355 1 MITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------ 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~------------~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~------ 62 (142)
+|+++|+|++.++..++- +++..-..+.++. .|..+.+ ...|++|+.-+.+
T Consensus 25 ~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----------~~adv~~I~VpTP~~~~~~ 93 (185)
T PF03721_consen 25 QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----------KDADVVFICVPTPSDEDGS 93 (185)
T ss_dssp EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----------HH-SEEEE----EBETTTS
T ss_pred EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----------hccceEEEecCCCccccCC
Confidence 489999999988876641 1111001122222 2222221 2578888754321
Q ss_pred ----CcHHHHHHHHhcccCCeEEEEecccccc
Q 032355 63 ----NYCNYHERLMKLLKVGGIAVYDNTLWGG 90 (142)
Q Consensus 63 ----~~~~~~~~~~~~L~~gG~iv~dn~~~~g 90 (142)
......+.+.+.++++.++|.......|
T Consensus 94 ~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 94 PDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp BETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred ccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 1244556666789999999988766544
No 323
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=70.52 E-value=33 Score=26.09 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=40.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
|+++..+++..+.+++. +|...-+..... +..+.+.... ...+|+|| |..- ...+..+.+.|+++|.
T Consensus 179 Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~ 246 (338)
T cd08295 179 VVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-----PNGIDIYF-DNVG---GKMLDAVLLNMNLHGR 246 (338)
T ss_pred EEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-----CCCcEEEE-ECCC---HHHHHHHHHHhccCcE
Confidence 55666677766666542 354322221111 3334344331 35699988 6542 2457788899999999
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
++.
T Consensus 247 iv~ 249 (338)
T cd08295 247 IAA 249 (338)
T ss_pred EEE
Confidence 885
No 324
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=70.45 E-value=6.8 Score=26.31 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=29.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALS 37 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~--~~~~v~~~~~da~~ 37 (142)
+|++||.+++..+.|++..+..+ +..+.++..++...
T Consensus 55 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 55 RVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred eEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 48999999999999999998887 44567777665543
No 325
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.31 E-value=25 Score=27.02 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc---HHHHHHHHhhcccCCCceeE---EEEcCCCcCcHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSENEGSFDY---AFVDADKDNYCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~d---a~~~l~~~~~~~~~~~~fD~---IfiD~~~~~~~~~~~~~~~~ 74 (142)
+|+.++.+++..+.+++ +|...-+.....+ ..+.+..+. .+..+|. +++|+.- ....++.+.+.
T Consensus 192 ~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t----~~~g~d~~~d~v~d~~g--~~~~~~~~~~~ 261 (349)
T TIGR03201 192 AVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA----KARGLRSTGWKIFECSG--SKPGQESALSL 261 (349)
T ss_pred eEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc----ccCCCCCCcCEEEECCC--ChHHHHHHHHH
Confidence 36788889988877754 3543222222222 222233221 1234652 3446542 34567778899
Q ss_pred ccCCeEEEEec
Q 032355 75 LKVGGIAVYDN 85 (142)
Q Consensus 75 L~~gG~iv~dn 85 (142)
|++||.++.-.
T Consensus 262 l~~~G~iv~~G 272 (349)
T TIGR03201 262 LSHGGTLVVVG 272 (349)
T ss_pred HhcCCeEEEEC
Confidence 99999988643
No 326
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=70.22 E-value=5.7 Score=29.89 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=40.7
Q ss_pred CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC--cCc----HHHHHHHHhcccCCeEEEEe
Q 032355 26 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNY----CNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 26 ~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~--~~~----~~~~~~~~~~L~~gG~iv~d 84 (142)
-..++..||+.+.++..... -..+|..|.|+-. .+. .+++..+.++..+||.+...
T Consensus 146 ~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ 207 (252)
T COG4121 146 LLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF 207 (252)
T ss_pred heeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech
Confidence 36889999999888765210 0179999999842 222 45778888899999998763
No 327
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=70.21 E-value=69 Score=28.05 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=44.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~ 73 (142)
+|..+|-++......+..++..|.. +. ...++.+.+..+. ...+||+|++|...+.. .+.++.+.+
T Consensus 683 ~vLivdD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~~~----~~~~~Dlvl~D~~mp~~~G~~~~~~lr~ 750 (914)
T PRK11466 683 RLLLIEDNPLTQRITAEMLNTSGAQ--VV-AVGNAAQALETLQ----NSEPFAAALVDFDLPDYDGITLARQLAQ 750 (914)
T ss_pred ceEEEeCCHHHHHHHHHHHHhcCCc--eE-EeCCHHHHHHHHH----cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4678999999999999999887753 44 4566666666552 13579999999865432 334444444
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.11 E-value=27 Score=26.53 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=40.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.+++ +|...-+.....+ .+.+..+. ....+|+|| |..- -...++.+.+.|+++|.+
T Consensus 191 vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~~~~d~vi-d~~g--~~~~~~~~~~~l~~~G~~ 258 (339)
T cd08239 191 VIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SGAGADVAI-ECSG--NTAARRLALEAVRPWGRL 258 (339)
T ss_pred EEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CCCCCCEEE-ECCC--CHHHHHHHHHHhhcCCEE
Confidence 7788888888777654 4543222222222 22233331 134799888 4432 234556778899999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 259 v~ 260 (339)
T cd08239 259 VL 260 (339)
T ss_pred EE
Confidence 75
No 329
>PRK14084 two-component response regulator; Provisional
Probab=69.98 E-value=38 Score=24.33 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=44.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~~L~~g 78 (142)
++..+|-++...+..+..++..+... .-....++.+.+..+. ...+|+||+|...+.. .+..+.+.. ..+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~-~v~~~~~~~~~l~~~~-----~~~~dlv~lDi~m~~~~G~~~~~~i~~-~~~~ 74 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFE-EINEAENVKETLEALL-----INQYDIIFLDINLMDESGIELAAKIQK-MKEP 74 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCce-EEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh-cCCC
Confidence 36678888888888888887754211 1223455666665553 3579999999764432 334444433 2344
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
..+++
T Consensus 75 ~~iI~ 79 (246)
T PRK14084 75 PAIIF 79 (246)
T ss_pred CEEEE
Confidence 44443
No 330
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=69.76 E-value=20 Score=29.03 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=43.1
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~ 77 (142)
|++|.......+-+.+.=-.+-+.+++|-..+.-.-+ +.+||.||--+..+--.-...++.+.|.|
T Consensus 141 Els~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL------~~rfD~IfyTGsp~VgkIim~aAaKhLTP 206 (477)
T KOG2456|consen 141 ELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELL------KQRFDHIFYTGSPRVGKIIMAAAAKHLTP 206 (477)
T ss_pred hcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHH------HhhccEEEecCCchHHHHHHHHHHhcCCc
Confidence 6777777777777766522357999999998875444 56899999866533223334444455444
No 331
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=69.75 E-value=12 Score=28.38 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=43.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHH-HHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER-LMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~-~~~~L~~gG~ 80 (142)
|+++|.++-.-...-....+ ..+|--+..||...-+.- ..-...|+||.|-+.+.....+.. +.-.|++||-
T Consensus 184 VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYR----mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGh 256 (317)
T KOG1596|consen 184 VYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYR----MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGH 256 (317)
T ss_pred EEEEEecccchHHHHHHhhc---cCCceeeeccCCCchhee----eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCe
Confidence 67888776543333222222 245667777876432110 113579999999876654443322 3357999998
Q ss_pred EEEe
Q 032355 81 AVYD 84 (142)
Q Consensus 81 iv~d 84 (142)
+++.
T Consensus 257 fvis 260 (317)
T KOG1596|consen 257 FVIS 260 (317)
T ss_pred EEEE
Confidence 8763
No 332
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=69.55 E-value=32 Score=23.37 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=35.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|..+|-++......++.+...+ ...+-....++.+.+..+. ..++|+|++|...
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~l~~~~-----~~~~dlvi~d~~~ 57 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEP-DLQVVAEFGSGREALAGLP-----GRGVQVCICDISM 57 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCC-CcEEEEEECCHHHHHHHHh-----cCCCCEEEEeCCC
Confidence 36678888888888887775432 1122234456666666552 4579999999754
No 333
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=69.50 E-value=12 Score=18.20 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=32.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
++..++-++.......+.+...|.. +. ...+.......+. ...+|++++|..
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~-----~~~~~~vi~~~~ 53 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYE--VD-EATDGEEALELLK-----EEKPDLILLDIM 53 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcE--EE-EeCCHHHHHHHHH-----hcCCCEEEEecc
Confidence 3567888888888888888766542 22 2234444443332 356999999863
No 334
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.93 E-value=37 Score=25.94 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=42.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
+++++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+++ |+.. -...+..+.+.|+++|.+
T Consensus 194 v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vl-d~~g--~~~~~~~~~~~l~~~G~~ 262 (351)
T cd08285 194 IIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GGKGVDAVI-IAGG--GQDTFEQALKVLKPGGTI 262 (351)
T ss_pred EEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CCCCCcEEE-ECCC--CHHHHHHHHHHhhcCCEE
Confidence 6778888877777664 4543222222233333333332 234699887 4322 134677888999999998
Q ss_pred EEec
Q 032355 82 VYDN 85 (142)
Q Consensus 82 v~dn 85 (142)
+.-.
T Consensus 263 v~~g 266 (351)
T cd08285 263 SNVN 266 (351)
T ss_pred EEec
Confidence 8543
No 335
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.24 E-value=30 Score=26.58 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=39.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-CcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-~~~~~~~~~~~~L~~gG 79 (142)
+|+.+|.+++..+.|++ ++.. ... .+. .. ...+|+|| |+.-. .....++.+.++|++||
T Consensus 191 ~vi~~~~~~~k~~~a~~----~~~~---~~~----~~~-~~-------~~g~d~vi-D~~G~~~~~~~~~~~~~~l~~~G 250 (341)
T cd08237 191 KLVVFGKHQEKLDLFSF----ADET---YLI----DDI-PE-------DLAVDHAF-ECVGGRGSQSAINQIIDYIRPQG 250 (341)
T ss_pred cEEEEeCcHhHHHHHhh----cCce---eeh----hhh-hh-------ccCCcEEE-ECCCCCccHHHHHHHHHhCcCCc
Confidence 37788988888888764 2221 111 111 11 22589888 54321 13557888899999999
Q ss_pred EEEEec
Q 032355 80 IAVYDN 85 (142)
Q Consensus 80 ~iv~dn 85 (142)
.++.-.
T Consensus 251 ~iv~~G 256 (341)
T cd08237 251 TIGLMG 256 (341)
T ss_pred EEEEEe
Confidence 998643
No 336
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.22 E-value=48 Score=24.82 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred CEEEEeCChhHHHHHHHHHH-------HcCC-C--------CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-
Q 032355 1 MITAIDVNRETYEIGLPIIK-------KAGV-D--------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~-------~~~~-~--------~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~- 63 (142)
+|+.+|.+++.++.+++.++ +.|. . .++++. .|.. .+ +..|+|+.-.+...
T Consensus 28 ~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~----~~-------~~aDlVi~av~e~~~ 95 (282)
T PRK05808 28 DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD----DL-------KDADLVIEAATENMD 95 (282)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH----Hh-------ccCCeeeecccccHH
Confidence 47889999999987664332 2221 1 123322 2221 11 35899998664322
Q ss_pred -cHHHHHHHHhcccCCeEEEE
Q 032355 64 -YCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 64 -~~~~~~~~~~~L~~gG~iv~ 83 (142)
-..+++.+.+.++++.+|+.
T Consensus 96 ~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 96 LKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred HHHHHHHHHHhhCCCCcEEEE
Confidence 24678888888888887754
No 337
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=67.74 E-value=40 Score=23.68 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=41.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. ..+.++.+.
T Consensus 4 ~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~l~ 69 (229)
T PRK10161 4 RILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLK 69 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 367788899988888888887664 233 4455566555442 457999999975432 233444443
No 338
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=67.69 E-value=38 Score=26.84 Aligned_cols=71 Identities=27% Similarity=0.397 Sum_probs=46.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~-da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
+|+++|++++..+.|++ +|..+-+.-... |+.+.+..+. ++..|..|--.. -.+.++.++..++++|
T Consensus 212 ~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T-----~gG~d~~~e~~G---~~~~~~~al~~~~~~G 279 (366)
T COG1062 212 RIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT-----DGGADYAFECVG---NVEVMRQALEATHRGG 279 (366)
T ss_pred eEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc-----CCCCCEEEEccC---CHHHHHHHHHHHhcCC
Confidence 58999999999999986 444322222212 5666666662 447888863222 2446777778778888
Q ss_pred EEEE
Q 032355 80 IAVY 83 (142)
Q Consensus 80 ~iv~ 83 (142)
..+.
T Consensus 280 ~~v~ 283 (366)
T COG1062 280 TSVI 283 (366)
T ss_pred eEEE
Confidence 8765
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.32 E-value=66 Score=26.05 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=26.8
Q ss_pred EEEEeCChhHH---HHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 2 ITAIDVNRETY---EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 2 v~~ve~~~~~~---~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
|..++.|+... +..+.+.+..|+. +... .+..++...+.. -..+|+|++|.+
T Consensus 254 V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~~-~~~~~l~~~l~~----~~~~DlVlIDt~ 308 (424)
T PRK05703 254 VALITLDTYRIGAVEQLKTYAKIMGIP--VEVV-YDPKELAKALEQ----LRDCDVILIDTA 308 (424)
T ss_pred EEEEECCccHHHHHHHHHHHHHHhCCc--eEcc-CCHHhHHHHHHH----hCCCCEEEEeCC
Confidence 56677777543 3445555555553 2211 222233222221 246999999965
No 340
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=67.27 E-value=27 Score=30.70 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=41.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~ 63 (142)
+|..+|-++......+..++..|.. +. ...++.+.+..+. ...||+|++|...+.
T Consensus 704 ~iLvvdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~~~dlvl~D~~mp~ 758 (968)
T TIGR02956 704 RVLLVEDNEVNQMVAQGFLTRLGHK--VT-LAESGQSALECFH-----QHAFDLALLDINLPD 758 (968)
T ss_pred ceEEEcCcHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHHH-----CCCCCEEEECCCCCC
Confidence 3678999999999999999988752 43 4566777666663 468999999986544
No 341
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=67.25 E-value=39 Score=26.22 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=42.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC-
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG- 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~--da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g- 78 (142)
|++++.+++..+.+++ +|...-+..... +..+.+..+. .+.+|+|| |+.- -...++.+.+.++++
T Consensus 214 vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vi-d~~g--~~~~~~~a~~~l~~~~ 281 (368)
T cd08300 214 IIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----DGGVDYTF-ECIG--NVKVMRAALEACHKGW 281 (368)
T ss_pred EEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----CCCCcEEE-ECCC--ChHHHHHHHHhhccCC
Confidence 7788889888877754 454322222221 2334444432 34799888 5432 234677788899886
Q ss_pred eEEEEe
Q 032355 79 GIAVYD 84 (142)
Q Consensus 79 G~iv~d 84 (142)
|.++.-
T Consensus 282 G~~v~~ 287 (368)
T cd08300 282 GTSVII 287 (368)
T ss_pred CeEEEE
Confidence 877653
No 342
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=66.78 E-value=34 Score=29.85 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~ 72 (142)
+|..+|-++......+..++..|. .+. ...++.+.+..+. ...||+|++|...+.. .+..+.+.
T Consensus 692 ~iLivdd~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~~G~~~~~~ir 757 (921)
T PRK15347 692 QILLVDDVETNRDIIGMMLVELGQ--QVT-TAASGTEALELGR-----QHRFDLVLMDIRMPGLDGLETTQLWR 757 (921)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 367899999999999999998875 344 4456666666553 5679999999865433 33444444
No 343
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=66.76 E-value=72 Score=26.31 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=51.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~~L~~g 78 (142)
+|..||-++.........++..|+. .....++.+.+..+. ...||+|++|-..+. -.++++.+...- |+
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~---v~~a~~~~~al~~i~-----~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~-~~ 76 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYE---VVTAESAEEALEALS-----ESPFDLVLLDIRMPGMDGLELLKEIKSRD-PD 76 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCe---EEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCchHHHHHHHHhhC-CC
Confidence 3778999999999999999999863 344556777776663 347999999986543 355666665543 44
Q ss_pred eEEE
Q 032355 79 GIAV 82 (142)
Q Consensus 79 G~iv 82 (142)
-.++
T Consensus 77 ~pVI 80 (464)
T COG2204 77 LPVI 80 (464)
T ss_pred CCEE
Confidence 4443
No 344
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=66.52 E-value=4.1 Score=27.01 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=18.9
Q ss_pred CceeEEEE--cCCCcC-cHHHHHHHHhcccCCeEEEEec
Q 032355 50 GSFDYAFV--DADKDN-YCNYHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 50 ~~fD~Ifi--D~~~~~-~~~~~~~~~~~L~~gG~iv~dn 85 (142)
..||+||+ ||+... |. +--.+++++.+.|++|+++
T Consensus 77 ~~~DvvlmRkDPPfD~~yi-~aT~lLe~a~~~gv~VvN~ 114 (119)
T PF02951_consen 77 DDFDVVLMRKDPPFDMEYI-YATYLLELAERQGVLVVND 114 (119)
T ss_dssp GGSSEEEEE--S---HHHH-HHHHHHHHHHHTT-EEES-
T ss_pred ccCCEEEEecCCCCChHHH-HHHHHHHHhhhCCcEEEeC
Confidence 46999998 776432 22 2334557776778888764
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=66.52 E-value=10 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 49 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
.++||+||+-.-.....+.++.+.+.+++++.|+.
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 46899999976555567788889999999977654
No 346
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.45 E-value=37 Score=25.47 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=39.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++ .|....+.....+..+.+ ... ....+|+++ |... ....++.+.+.|+++|.+
T Consensus 192 V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~~~D~vi-d~~g--~~~~~~~~~~~l~~~G~~ 259 (338)
T cd08254 192 VIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGGGFDVIF-DFVG--TQPTFEDAQKAVKPGGRI 259 (338)
T ss_pred EEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCCCceEEE-ECCC--CHHHHHHHHHHhhcCCEE
Confidence 5667777776666543 344221222222232333 221 245799776 4421 245677888999999998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.-
T Consensus 260 v~~ 262 (338)
T cd08254 260 VVV 262 (338)
T ss_pred EEE
Confidence 863
No 347
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=66.33 E-value=69 Score=25.95 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=42.1
Q ss_pred CEEEEeCChhHHHHHHH------------HHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC----cC-
Q 032355 1 MITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----DN- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~------------~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~----~~- 63 (142)
.|+++|+|++.++..++ .+++...+.|.++-. |..+.+ ...|++|+--+. .+
T Consensus 25 eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a~----------~~adv~fIavgTP~~~dg~ 93 (414)
T COG1004 25 EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEAV----------KDADVVFIAVGTPPDEDGS 93 (414)
T ss_pred eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHHH----------hcCCEEEEEcCCCCCCCCC
Confidence 48999999999988664 333333333444442 222221 257888874321 11
Q ss_pred -cHHH----HHHHHhcccCCeEEEEecccc
Q 032355 64 -YCNY----HERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 64 -~~~~----~~~~~~~L~~gG~iv~dn~~~ 88 (142)
...+ .+.+.+.++...++|......
T Consensus 94 aDl~~V~ava~~i~~~~~~~~vvV~KSTVP 123 (414)
T COG1004 94 ADLSYVEAVAKDIGEILDGKAVVVIKSTVP 123 (414)
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEcCCCC
Confidence 2233 344445676667777754443
No 348
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=66.28 E-value=11 Score=27.89 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=34.7
Q ss_pred CEEEEeCChhHHHH-HHHHHHHcCCCCcEE-EEEccHHHH-HHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~-a~~~~~~~~~~~~v~-~~~~da~~~-l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~ 77 (142)
+|+++|.++.++.. .+++ .++. +-..++... ...+.. .-..+|++|+-- ...+..+.++|++
T Consensus 100 ~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~~---d~~~~DvsfiS~-----~~~l~~i~~~l~~ 164 (228)
T TIGR00478 100 EVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIFP---DFATFDVSFISL-----ISILPELDLLLNP 164 (228)
T ss_pred EEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcCC---CceeeeEEEeeh-----HhHHHHHHHHhCc
Confidence 48999999977654 3322 2322 222222210 000100 013577777632 3357788888888
Q ss_pred CeEEEE
Q 032355 78 GGIAVY 83 (142)
Q Consensus 78 gG~iv~ 83 (142)
|.+++
T Consensus 165 -~~~~~ 169 (228)
T TIGR00478 165 -NDLTL 169 (228)
T ss_pred -CeEEE
Confidence 66654
No 349
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=66.26 E-value=44 Score=25.53 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+|+--.. -...++.+.+.|+++|.+
T Consensus 200 v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~ 268 (351)
T cd08233 200 IIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GGGGVDVSFDCAG---VQATLDTAIDALRPRGTA 268 (351)
T ss_pred EEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CCCCCCEEEECCC---CHHHHHHHHHhccCCCEE
Confidence 5667777777776654 3443223333334444443332 2345999984222 134577788899999998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.-
T Consensus 269 v~~ 271 (351)
T cd08233 269 VNV 271 (351)
T ss_pred EEE
Confidence 763
No 350
>CHL00148 orf27 Ycf27; Reviewed
Probab=66.21 E-value=43 Score=23.54 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=42.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..+. .+. ...++.+.+..+. ...+|+|++|...+. -.+.++.+..
T Consensus 8 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~l~~~~-----~~~~d~illd~~~~~~~g~~~~~~l~~ 74 (240)
T CHL00148 8 KILVVDDEAYIRKILETRLSIIGY--EVI-TASDGEEALKLFR-----KEQPDLVILDVMMPKLDGYGVCQEIRK 74 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 367789999999888888887654 243 3446666655542 457999999965432 2344444443
No 351
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=66.11 E-value=29 Score=22.77 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEe
Q 032355 49 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 128 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (142)
...+|++++-..+. ....-..+.+.|+.-|+-+-- . +...+.+.||..+.+..++-..+
T Consensus 52 ~~~peiliiGtG~~-~~~~~~~~~~~l~~~gi~vev--m------------------~T~~AcrtyN~L~~EgR~VaaaL 110 (114)
T cd05125 52 EPRPEILVIGTGRK-SRPLSPELRKYFKKLGIAVEV--V------------------DTRNACATFNFLAEEGRRVAAAL 110 (114)
T ss_pred cCCCCEEEEccCCC-CCcCCHHHHHHHHHcCCEEEE--E------------------CHHHHHHHHHHHHhCCCeEEEEE
Confidence 35789999976543 222222334444445443210 0 05568999999888888898888
Q ss_pred eecC
Q 032355 129 VALG 132 (142)
Q Consensus 129 lp~g 132 (142)
+|.+
T Consensus 111 ip~~ 114 (114)
T cd05125 111 IPPG 114 (114)
T ss_pred ecCC
Confidence 8864
No 352
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=66.08 E-value=9.4 Score=27.87 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=44.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEc-C--CCcCcHHHHHHHHhcccCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-A--DKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD-~--~~~~~~~~~~~~~~~L~~g 78 (142)
|++.|++|-..+.++-|.+.+|. .|.+...|..- .+..||+|+.- - ++......++ ++..++..
T Consensus 105 v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~ 171 (218)
T COG3897 105 VVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEA 171 (218)
T ss_pred HHhcCCChHHHHHhhcchhhccc--eeEEeeccccC----------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhC
Confidence 56789999999999999999886 48888887643 26789999863 2 1222233444 44444444
Q ss_pred eEEE
Q 032355 79 GIAV 82 (142)
Q Consensus 79 G~iv 82 (142)
|..|
T Consensus 172 g~~v 175 (218)
T COG3897 172 GAAV 175 (218)
T ss_pred CCEE
Confidence 4433
No 353
>PRK13856 two-component response regulator VirG; Provisional
Probab=65.97 E-value=44 Score=23.88 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=38.0
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...||+|++|...+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~d~~l~ 56 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAF--KVT-AVADSQQFNRVLA-----SETVDVVVVDLNLG 56 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----hCCCCEEEEeCCCC
Confidence 367899999999988988887764 343 3455555555442 46799999997543
No 354
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=65.68 E-value=48 Score=24.60 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=42.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.|++ +|...-+.. .+..+.+..+. ....+|+|| |+.- -...++.+.+.|+++|.+
T Consensus 148 Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~d~vi-d~~G--~~~~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 148 VVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGVDVAL-EFSG--ATAAVRACLESLDVGGTA 214 (280)
T ss_pred EEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCCCEEE-ECCC--ChHHHHHHHHHhcCCCEE
Confidence 6778888888877765 454221111 11122222221 134699987 5431 244677788999999999
Q ss_pred EEecc
Q 032355 82 VYDNT 86 (142)
Q Consensus 82 v~dn~ 86 (142)
+.-..
T Consensus 215 v~~G~ 219 (280)
T TIGR03366 215 VLAGS 219 (280)
T ss_pred EEecc
Confidence 86443
No 355
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=65.58 E-value=32 Score=29.59 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=44.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~ 72 (142)
+|..+|-++......+..++..|. .+. ...++.+.+..+. ..+||+|++|...+.. .+..+.+.
T Consensus 527 ~ILivdD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~Dlvl~D~~mp~~~G~e~~~~ir 592 (779)
T PRK11091 527 NILLVEDIELNVIVARSVLEKLGN--SVD-VAMTGKEALEMFD-----PDEYDLVLLDIQLPDMTGLDIARELR 592 (779)
T ss_pred ceEEEcCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHhh-----cCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 367889999999999999988875 233 3467777766653 4679999999765432 33444444
No 356
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=65.13 E-value=41 Score=24.55 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=41.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~ 72 (142)
+|..+|-++...+..+..+...+-. .+.....+..+.+..+. ...+|+|++|...+.. ...++.+.
T Consensus 4 ~vLivdd~~~~~~~l~~~L~~~~~~-~~~~~a~~~~eal~~l~-----~~~~DlvllD~~mp~~dG~~~l~~i~ 71 (262)
T TIGR02875 4 RIVIADDNKEFCNLLKEYLAAQPDM-EVVGVAHNGVDALELIK-----EQQPDVVVLDIIMPHLDGIGVLEKLN 71 (262)
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3677898999999888888653211 22223456666666553 4679999999754432 33444444
No 357
>PHA01634 hypothetical protein
Probab=65.11 E-value=9.5 Score=25.98 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=35.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+|+++|.++...+..+++++.+..-++..-.. +|- . .-++||+..+|..
T Consensus 53 ~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~-~------~Y~~~Di~~iDCe 101 (156)
T PHA01634 53 FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWN-G------EYEDVDIFVMDCE 101 (156)
T ss_pred EEEEeccCHHHHHHHHHHhhhheeeeceeecc----ccc-c------cCCCcceEEEEcc
Confidence 48999999999999999998876544443332 231 1 1468999999985
No 358
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.55 E-value=24 Score=27.30 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=48.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCC-ceeEEEEcCCCcC-----------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDN----------------- 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~-~fD~IfiD~~~~~----------------- 63 (142)
+.++|+++.+++.-+.|+.. ..++.+|..+....-. .. .+|++.--+|+..
T Consensus 28 ~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L 96 (328)
T COG0270 28 VFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSL 96 (328)
T ss_pred EEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCCEEEeCCCCcchhhcCcccCCcCcccee
Confidence 57899999999999888744 4666777766543211 12 7899987655321
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 032355 64 YCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 64 ~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
+..+. .+...++| -.+|.+||-
T Consensus 97 ~~~~~-r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 97 FLEFI-RLIEQLRP-KFFVLENVK 118 (328)
T ss_pred eHHHH-HHHHhhCC-CEEEEecCc
Confidence 23333 34466777 688888884
No 359
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=64.47 E-value=22 Score=26.71 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=22.8
Q ss_pred CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 26 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 26 ~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
.++++.++|+.+.+... ..=|+||+|||.
T Consensus 154 ~~v~i~~~Df~~~i~~~-------~~~dfvYlDPPY 182 (266)
T TIGR00571 154 QNTTFLCGSFEKILAMV-------DDDSFVYCDPPY 182 (266)
T ss_pred cCCEEEECCHHHHHhhc-------CCCCEEEECCCC
Confidence 36899999999998643 234699999985
No 360
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=63.89 E-value=57 Score=24.11 Aligned_cols=77 Identities=13% Similarity=-0.062 Sum_probs=49.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC--CCcCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~--~~~~~~~~~~~~~~~L~~g 78 (142)
+|.-||=||-.++.=+.++++.+-- .+--.-++..+...-+. .-+.|+|++|- +..+-.+++..+...--+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF-~~vg~A~~~~ea~~~i~-----~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~ 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGF-SVVGTAGTLEEAKMIIE-----EFKPDLILLDIYMPDGNGIELLPELRSQHYPV 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCc-eEEEeeccHHHHHHHHH-----hhCCCEEEEeeccCCCccHHHHHHHHhcCCCC
Confidence 4677898999999999999887432 23344444444333332 22459999996 3344567777777655566
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
.+|+.
T Consensus 76 DVI~i 80 (224)
T COG4565 76 DVIVI 80 (224)
T ss_pred CEEEE
Confidence 67765
No 361
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=63.74 E-value=24 Score=26.27 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=31.0
Q ss_pred CEEEEeCChhHHHH--HHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcC
Q 032355 1 MITAIDVNRETYEI--GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 59 (142)
Q Consensus 1 ~v~~ve~~~~~~~~--a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~ 59 (142)
+|..||-||..--. ++.-.+...+++++.+..++=...+....+. -....||+||+|.
T Consensus 32 ~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvDl 91 (231)
T PF07015_consen 32 RVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVDL 91 (231)
T ss_pred eEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEeC
Confidence 36777877764333 2222222345567787776544444333110 0124599999996
No 362
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=63.66 E-value=46 Score=22.99 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=37.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~d~vi~d~~~~ 57 (226)
T TIGR02154 4 RILVVEDEPAIRELIAYNLEKAGY--DVV-EAGDGDEALTLIN-----ERGPDLILLDWMLP 57 (226)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcCHHHHHHHHH-----hcCCCEEEEECCCC
Confidence 367788899988888888877654 233 3445555555442 45799999997543
No 363
>PRK09191 two-component response regulator; Provisional
Probab=63.51 E-value=54 Score=23.69 Aligned_cols=65 Identities=8% Similarity=0.008 Sum_probs=41.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC---cHHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~---~~~~~~~~~~ 73 (142)
+..+|-++......+..++..|. .+.....++.+.+..+. ...+|+|++|...+. ..+.++.+..
T Consensus 140 ~liidd~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~l~~l~-----~~~~dlvi~d~~~~~~~~g~e~l~~l~~ 207 (261)
T PRK09191 140 VLIIEDEPIIAMDLEQLVESLGH--RVTGIARTRAEAVALAK-----KTRPGLILADIQLADGSSGIDAVNDILK 207 (261)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCC--EEEEEECCHHHHHHHHh-----ccCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 56788888888888888876654 23334556665555542 457999999975432 2344444443
No 364
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=63.07 E-value=8.6 Score=31.30 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=35.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 40 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~-v~~~~~da~~~l~ 40 (142)
+|++-|.+|++++..+.|+....+.+. |+++..||.+++.
T Consensus 273 rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 273 RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 478999999999999999998888765 9999999999884
No 365
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=62.72 E-value=83 Score=25.60 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=47.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcc-----cCC---CceeEEEEcCCCc----------
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE---GSFDYAFVDADKD---------- 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~-----~~~---~~fD~IfiD~~~~---------- 62 (142)
+|+++|+|+..++...+ | +..+..-+..+.++...++. ... ...|++++--+.+
T Consensus 34 ~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pDls 105 (436)
T COG0677 34 KVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVPTPLKKYREPDLS 105 (436)
T ss_pred ceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEecCCcCCCCCCChH
Confidence 58999999998877653 2 23333334444344332210 011 1567777643211
Q ss_pred CcHHHHHHHHhcccCCeEEEEecccccc
Q 032355 63 NYCNYHERLMKLLKVGGIAVYDNTLWGG 90 (142)
Q Consensus 63 ~~~~~~~~~~~~L~~gG~iv~dn~~~~g 90 (142)
......+.+.+.|++|-+++.+...+.|
T Consensus 106 ~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 106 YVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 1123345566899999999999888766
No 366
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=62.70 E-value=48 Score=25.96 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=54.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
+|+++=-+++.++.+++ .+|++.-|+....|..+.|++.. +...|+.|=.-. -+.++++.++|+..|.
T Consensus 177 rVVGiaGg~eK~~~l~~---~lGfD~~idyk~~d~~~~L~~a~-----P~GIDvyfeNVG----g~v~DAv~~~ln~~aR 244 (340)
T COG2130 177 RVVGIAGGAEKCDFLTE---ELGFDAGIDYKAEDFAQALKEAC-----PKGIDVYFENVG----GEVLDAVLPLLNLFAR 244 (340)
T ss_pred eEEEecCCHHHHHHHHH---hcCCceeeecCcccHHHHHHHHC-----CCCeEEEEEcCC----chHHHHHHHhhccccc
Confidence 46777777888877766 35887778888888888777652 567999885443 3467888888888888
Q ss_pred EEEeccc
Q 032355 81 AVYDNTL 87 (142)
Q Consensus 81 iv~dn~~ 87 (142)
|++-...
T Consensus 245 i~~CG~I 251 (340)
T COG2130 245 IPVCGAI 251 (340)
T ss_pred eeeeeeh
Confidence 8764443
No 367
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=62.52 E-value=63 Score=24.38 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=40.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 80 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~-~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~ 80 (142)
|+++..+++..+.+++ .|...-+.... .+..+.+... .+.+|.++++... ...++.+.+.|+++|.
T Consensus 190 v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~ 256 (338)
T PRK09422 190 VIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------TGGAHAAVVTAVA---KAAFNQAVDAVRAGGR 256 (338)
T ss_pred EEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------cCCCcEEEEeCCC---HHHHHHHHHhccCCCE
Confidence 5677777777766643 35421111111 1222333333 2358988877643 4567888899999999
Q ss_pred EEE
Q 032355 81 AVY 83 (142)
Q Consensus 81 iv~ 83 (142)
++.
T Consensus 257 ~v~ 259 (338)
T PRK09422 257 VVA 259 (338)
T ss_pred EEE
Confidence 875
No 368
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.51 E-value=39 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=18.7
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
..||+|++|.+.......+ .+.....-.+++++
T Consensus 66 ~~yD~VIiD~pp~~~~~~~-~~~~~~~ad~viiV 98 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHL-TLAQSLPIDGAVIV 98 (169)
T ss_pred CCCCEEEEeCCCCCcHHHH-HHHhccCCCeEEEE
Confidence 5899999999865322222 22222334556555
No 369
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=62.03 E-value=56 Score=23.36 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=47.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHhcccC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 77 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~-~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~~L~~ 77 (142)
+|..+|-++...+..+..++.. ++ .+-....++.+.+..+. ..++|+|++|...+. -.+.++.+.+.-.+
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~~~~--~~v~~a~~~~~al~~~~-----~~~pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 6 TLLIVEDETPLAEMHAEYIRHIPGF--SQILLAGNLAQARMMIE-----RFKPGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 3677888888888888888764 22 23445567777666653 457999999975443 34455555443333
Q ss_pred CeEEEE
Q 032355 78 GGIAVY 83 (142)
Q Consensus 78 gG~iv~ 83 (142)
..+|++
T Consensus 79 ~~iivl 84 (225)
T PRK10046 79 GDVVFT 84 (225)
T ss_pred CCEEEE
Confidence 345544
No 370
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=61.93 E-value=55 Score=26.95 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=14.1
Q ss_pred CEEEEeCChhHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLP 17 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~ 17 (142)
+|+++|++++.++..++
T Consensus 28 ~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 28 EVVVVDISVPRIDAWNS 44 (473)
T ss_pred eEEEEECCHHHHHHHHc
Confidence 38899999999888654
No 371
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=61.33 E-value=81 Score=28.20 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=44.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~ 73 (142)
|..+|-++......++.++..|. .+ ....++.+.+..+. ...||+|++|...+.. .+..+.+.+
T Consensus 804 ILvVdD~~~~~~~l~~~L~~~G~--~v-~~a~~g~eal~~l~-----~~~~DlVl~D~~mP~mdG~el~~~ir~ 869 (924)
T PRK10841 804 ILVVDDHPINRRLLADQLGSLGY--QC-KTANDGVDALNVLS-----KNHIDIVLTDVNMPNMDGYRLTQRLRQ 869 (924)
T ss_pred EEEECCCHHHHHHHHHHHHHcCC--EE-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 67789999999999999999876 34 34556667666653 4679999999865432 334444443
No 372
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=61.33 E-value=50 Score=22.57 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=41.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..+- -.+.....+..+.+..+. ..++|+|++|...+. -..+++.+..
T Consensus 5 ~iliv~d~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~l~~ 73 (210)
T PRK09935 5 SVIIMDTHPIIRMSIEVLLQKNSE-LQIVLKTDDYRITIDYLR-----TRPVDLIIMDIDLPGTDGFTFLKRIKQ 73 (210)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCC-ceEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 367788888888888888866531 133334566666655542 457999999975432 2344444443
No 373
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=61.27 E-value=56 Score=23.12 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=42.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..|.. +. ...++.+.+..+. ...||+|++|...+. ..+.++.+..
T Consensus 7 ~iLiv~d~~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr~ 73 (239)
T PRK09468 7 KILVVDDDMRLRALLERYLTEQGFQ--VR-SAANAEQMDRLLT-----RESFHLMVLDLMLPGEDGLSICRRLRS 73 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3677899999999999999887653 33 3455655555442 467999999975432 2344444443
No 374
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=60.90 E-value=47 Score=26.01 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcccCCCceeEEEEcCCC-------------------
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADK------------------- 61 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~d-a~~~l~~~~~~~~~~~~fD~IfiD~~~------------------- 61 (142)
|++++.+++..+.+++.. +. ..+.....+ ..+.+..+. .+..+|+|| |..-
T Consensus 212 vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~~~~~D~vl-d~vg~~~~~~~~~~~~~~~~~~~ 282 (386)
T cd08283 212 VIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----GGRGPDVCI-DAVGMEAHGSPLHKAEQALLKLE 282 (386)
T ss_pred EEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----CCCCCCEEE-ECCCCcccccccccccccccccc
Confidence 788899999988888743 22 122322222 333333331 234699887 4321
Q ss_pred cCcHHHHHHHHhcccCCeEEEEe
Q 032355 62 DNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 62 ~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
......++.+.+.++++|.++.-
T Consensus 283 ~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 283 TDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred cCchHHHHHHHHHhccCCEEEEE
Confidence 11244678888999999998763
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.74 E-value=78 Score=24.80 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=46.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc--CcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~--~~~~~~~~~~~~L~~g 78 (142)
+++-||-+..++......+.+.+- +.-.+..-.+.+..+. ....|+||+|-..+ +-.++.+.+..+...=
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~---~~~~~~~~~eal~~Le-----~~kpDLifldI~mp~~ngiefaeQvr~i~~~v 73 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGH---EVRSCSHPVEALDLLE-----VFKPDLIFLDIVMPYMNGIEFAEQVRDIESAV 73 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccc---hhhccCCHHHHHHHHH-----hcCCCEEEEEeecCCccHHHHHHHHHHhhccC
Confidence 478899999999999999988872 1111222223333332 45799999998654 3466777777766443
Q ss_pred eEE
Q 032355 79 GIA 81 (142)
Q Consensus 79 G~i 81 (142)
-+|
T Consensus 74 ~ii 76 (361)
T COG3947 74 PII 76 (361)
T ss_pred cEE
Confidence 343
No 376
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=60.72 E-value=87 Score=25.17 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=42.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-----ccCCCceeEEEEcCCCc----------CcH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENEGSFDYAFVDADKD----------NYC 65 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~-----~~~~~~fD~IfiD~~~~----------~~~ 65 (142)
+|+++|++++.++..+. |. +.+...+..+.+....+. ....+..|+||+-.+.+ ...
T Consensus 28 ~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~dl~~v~ 99 (415)
T PRK11064 28 QVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEPDLTYVE 99 (415)
T ss_pred EEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCcChHHHH
Confidence 47899999998775321 21 222233333333221100 00012579999865532 223
Q ss_pred HHHHHHHhcccCCeEEEEecccc
Q 032355 66 NYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 66 ~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
...+.+.+.+++|.++|......
T Consensus 100 ~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 100 AAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCC
Confidence 34566677888888877765543
No 377
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=60.63 E-value=58 Score=24.55 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=40.1
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|++++.+++..+.+++ +|...-+.....+..+.+..+. ....+|++| |+.-. . ......+.++++|.+
T Consensus 171 vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~~~d~vi-d~~g~--~-~~~~~~~~l~~~G~~ 238 (324)
T cd08291 171 VINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKLNATIFF-DAVGG--G-LTGQILLAMPYGSTL 238 (324)
T ss_pred EEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCCCCcEEE-ECCCc--H-HHHHHHHhhCCCCEE
Confidence 5677778877777765 4543222322234434343332 234699888 54321 2 234557788899998
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.-
T Consensus 239 v~~ 241 (324)
T cd08291 239 YVY 241 (324)
T ss_pred EEE
Confidence 763
No 378
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=60.63 E-value=41 Score=21.43 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 10 ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
-+++..++.++..|++ +++......+.-.. -+.+|+|++-|. ..-.++.+.+...+.|+-
T Consensus 15 ~la~km~~~a~~~gi~--~~i~a~~~~e~~~~-------~~~~Dvill~PQ---v~~~~~~i~~~~~~~~ip 74 (99)
T cd05565 15 LLANALNKGAKERGVP--LEAAAGAYGSHYDM-------IPDYDLVILAPQ---MASYYDELKKDTDRLGIK 74 (99)
T ss_pred HHHHHHHHHHHHCCCc--EEEEEeeHHHHHHh-------ccCCCEEEEcCh---HHHHHHHHHHHhhhcCCC
Confidence 3556678888888884 77887777765332 357999998764 444567777777776653
No 379
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=60.25 E-value=21 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH------cCCCCcEEEEE--------ccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 11 TYEIGLPIIKK------AGVDHKINFIE--------SEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 11 ~~~~a~~~~~~------~~~~~~v~~~~--------~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
..+.+++.++. .|..-...+.. |+..+.+-+.++ +..+|+|++|+.
T Consensus 63 lle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Ae----e~~aDLIVm~~~ 122 (357)
T PRK12652 63 LLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAE----EHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHH----HcCCCEEEECCC
Confidence 34555555544 36543444444 676665555543 568999999985
No 380
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=60.25 E-value=40 Score=25.65 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=36.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.+|.+++..+.+++ .|... . ...+..+. -...|+|++-.+......+++.+.+.+++|++|
T Consensus 34 V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 34 IVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGADLVILCVPVGASGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred EEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEE
Confidence 6778888877666543 33321 1 11222221 135799988776544556666666777777755
Q ss_pred E
Q 032355 82 V 82 (142)
Q Consensus 82 v 82 (142)
+
T Consensus 97 ~ 97 (307)
T PRK07502 97 T 97 (307)
T ss_pred E
Confidence 3
No 381
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=60.14 E-value=41 Score=21.17 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=42.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcccCCC-ceeEEEEcCCCcC--cHHHHHHHHhc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEG-SFDYAFVDADKDN--YCNYHERLMKL 74 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~-~~l~~~~~~~~~~~-~fD~IfiD~~~~~--~~~~~~~~~~~ 74 (142)
+|..+|-++......+..+...|. .+. ...++. +.+..+. .. .||+|++|...+. -.+..+.+.+.
T Consensus 7 ~vLivdD~~~~~~~~~~~l~~~g~--~v~-~a~~g~~~al~~~~-----~~~~~dlii~D~~mp~~~G~~~~~~l~~~ 76 (130)
T COG0784 7 RVLVVDDEPVNRRLLKRLLEDLGY--EVV-EAADGEEEALELLR-----ELPQPDLILLDINMPGMDGIELLRRLRAR 76 (130)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCChHHHHHHHHH-----hCCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 366788899999999999999873 222 223442 5555442 34 5999999987653 23445555443
No 382
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=59.76 E-value=57 Score=22.74 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=38.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..+|-++...+..+..++..|. .+. ...++.+.+..+. ...||+|++|...+
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~--~v~-~~~~~~~~l~~~~-----~~~~dlvild~~l~ 55 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGH--QVD-AAEDAKEADYYLN-----EHLPDIAIVDLGLP 55 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hCCCCEEEEECCCC
Confidence 367789999999988888988765 243 4455666655542 46799999997543
No 383
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=59.73 E-value=67 Score=24.29 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=38.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
+++++.+++..+.+++ .|...-+.....+..+.+..+. .++.+|++| |+.. ....++.+.+.|+++|.+
T Consensus 195 v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~~~d~vl-d~~g--~~~~~~~~~~~l~~~G~~ 263 (347)
T cd05278 195 IIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GGRGVDCVI-EAVG--FEETFEQAVKVVRPGGTI 263 (347)
T ss_pred EEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CCCCCcEEE-EccC--CHHHHHHHHHHhhcCCEE
Confidence 4555666655555443 3322222222333334344332 235699887 5432 124677788999999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 264 v~ 265 (347)
T cd05278 264 AN 265 (347)
T ss_pred EE
Confidence 74
No 384
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=59.39 E-value=48 Score=28.90 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=39.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 63 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~ 63 (142)
|..+|-++......+..++..|. .+. ...++.+.+..+. ..+||+|++|...+.
T Consensus 670 vLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~al~~~~-----~~~~dlil~D~~mp~ 723 (919)
T PRK11107 670 VMAVDDNPANLKLIGALLEEQVE--HVV-LCDSGHQAVEQAK-----QRPFDLILMDIQMPG 723 (919)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCC
Confidence 67789999999999999988764 233 3456666666553 468999999976543
No 385
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=58.74 E-value=20 Score=26.62 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=26.8
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
..||+||+-.........++.+.+++.+++.|+.
T Consensus 58 ~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 58 PPADLVIITVKAYQTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred CCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEE
Confidence 4799999976655567778888889998888765
No 386
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=58.71 E-value=71 Score=24.49 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=36.1
Q ss_pred cCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 22 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 22 ~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
.+...+|++-..+..+..+.+ ....|+|.+|--. ++-++.+.++++-.|.++.
T Consensus 185 ~~~~~kIEVEvesle~~~eAl------~agaDiImLDNm~---~e~~~~av~~l~~~~~~~l 237 (280)
T COG0157 185 APFTKKIEVEVESLEEAEEAL------EAGADIIMLDNMS---PEELKEAVKLLGLAGRALL 237 (280)
T ss_pred CCCCceEEEEcCCHHHHHHHH------HcCCCEEEecCCC---HHHHHHHHHHhccCCceEE
Confidence 355557999988888876666 4579999999764 4556666676444444433
No 387
>PHA00684 hypothetical protein
Probab=58.37 E-value=16 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhcCCCeeEEeeecCceeE
Q 032355 107 SRQAILDLNRSLADDPRVQLSHVALGDGIT 136 (142)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~lp~gdG~~ 136 (142)
+...+.+|.++-+++|..+--+.++|.|+.
T Consensus 58 I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiA 87 (128)
T PHA00684 58 IGAAVNRFIAYATAHPHLNFQVTRVGCGLA 87 (128)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeeeccccc
Confidence 666799999999999999988999999974
No 388
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=58.12 E-value=25 Score=26.48 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 57 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi 57 (142)
++++|+|..+++.....+..++.. .++...|...-. +....|+.++
T Consensus 132 Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~--------~~~~~DlaLl 177 (251)
T PF07091_consen 132 YIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP--------PKEPADLALL 177 (251)
T ss_dssp EEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH--------TTSEESEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC--------CCCCcchhhH
Confidence 689999999999999999999875 455555654421 2567999987
No 389
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=58.01 E-value=31 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAG 23 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~ 23 (142)
+++++|.|+.+.+.++..++...
T Consensus 60 ~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 60 EYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred eeeeecCCHHHHHHHHHHHhccc
Confidence 47899999999999999776653
No 390
>PRK10904 DNA adenine methylase; Provisional
Probab=57.88 E-value=45 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=23.4
Q ss_pred CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 26 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 26 ~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
.++++.++|..+.+... ..=|+|++|||.
T Consensus 156 ~~v~i~~~Df~~~i~~~-------~~~~fvYlDPPY 184 (271)
T PRK10904 156 QNAFFYCESYADSMARA-------DKGSVVYCDPPY 184 (271)
T ss_pred cCCEEEECCHHHHHhhc-------CCCcEEEECCCC
Confidence 46899999999998753 345899999985
No 391
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=57.83 E-value=65 Score=22.82 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~~L~~g 78 (142)
+|..+|-++...+..+..++..|.. +. ...++.+.+..+. ...+|+|++|...+.. ...++.+... .+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~--v~-~~~~~~~~l~~~~-----~~~~dlvild~~l~~~~g~~~~~~ir~~-~~~ 73 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDID--VT-VEPRGDRAEATIL-----REQPDLVLLDIMLPGKDGMTICRDLRPK-WQG 73 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCE--EE-EeCCHHHHHHHHh-----hCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCC
Confidence 3678899999999999989887652 33 2346666655542 4579999999754332 3444444432 233
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
.++++
T Consensus 74 pii~l 78 (240)
T PRK10701 74 PIVLL 78 (240)
T ss_pred CEEEE
Confidence 44443
No 392
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=57.39 E-value=65 Score=27.26 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=42.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
.++.+|.|++.++.+++ .| ..++.||+.+ .+++. .-++.|.+++-.+.+.-....-...+.+.|.
T Consensus 425 ~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 425 RITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKAEAIVITCNEPEDTMKIVELCQQHFPH 491 (601)
T ss_pred CEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccCCEEEEEeCCHHHHHHHHHHHHHHCCC
Confidence 47899999999988764 23 5789999865 44433 1357888887554322111121223456677
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
..+++
T Consensus 492 ~~Iia 496 (601)
T PRK03659 492 LHILA 496 (601)
T ss_pred CeEEE
Confidence 77775
No 393
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=57.27 E-value=58 Score=26.62 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=41.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 66 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~ 66 (142)
+|..+|=++...+..++.+...|. ++... .++.+.+..+. +.+||+|++|...+.+..
T Consensus 134 kILvvdD~~~~~~~l~~~L~~~g~--~v~~a-~~~~~Al~~~~-----e~~~dlil~d~~mp~~dg 191 (435)
T COG3706 134 KILVVDDDATQRERLRRILQVEGF--RVVEA-TDGEEALLQLA-----ELPPDLVLLDANMPDMDG 191 (435)
T ss_pred eEEEEcCcHHHHHHHHHHHHhccc--eeeee-cCHHHHHHHHh-----cCCCcEEEEecCCCccCH
Confidence 466788888888888888888874 34443 34555555553 459999999998876554
No 394
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=56.99 E-value=97 Score=24.56 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=46.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~~L~~g 78 (142)
+|..||-++......+..++..|. .+. ...++.+.+..+. ...||+|++|...+. -.+.+..+... .++
T Consensus 7 ~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~DlvilD~~m~~~~G~~~~~~ir~~-~~~ 77 (441)
T PRK10365 7 DILVVDDDISHCTILQALLRGWGY--NVA-LANSGRQALEQVR-----EQVFDLVLCDVRMAEMDGIATLKEIKAL-NPA 77 (441)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhh-CCC
Confidence 367789999999999999988775 243 3446666666553 457999999975433 23344444332 344
Q ss_pred eEEE
Q 032355 79 GIAV 82 (142)
Q Consensus 79 G~iv 82 (142)
..++
T Consensus 78 ~~vi 81 (441)
T PRK10365 78 IPVL 81 (441)
T ss_pred CeEE
Confidence 4433
No 395
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.93 E-value=77 Score=26.41 Aligned_cols=71 Identities=6% Similarity=-0.033 Sum_probs=43.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
.++.+|.|++.++.+++ . ....+.||+.+ .+++. .-++.|.+++-.+.+.-....-.+.+..+|.
T Consensus 442 ~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~~L~~a-----~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~ 508 (558)
T PRK10669 442 PLVVIETSRTRVDELRE----R----GIRAVLGNAANEEIMQLA-----HLDCARWLLLTIPNGYEAGEIVASAREKRPD 508 (558)
T ss_pred CEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHHHHHhc-----CccccCEEEEEcCChHHHHHHHHHHHHHCCC
Confidence 47899999999888874 1 36789999865 33332 1357998877543221111222233445677
Q ss_pred eEEEEe
Q 032355 79 GIAVYD 84 (142)
Q Consensus 79 G~iv~d 84 (142)
..+++.
T Consensus 509 ~~iiar 514 (558)
T PRK10669 509 IEIIAR 514 (558)
T ss_pred CeEEEE
Confidence 777763
No 396
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.81 E-value=11 Score=30.06 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCceeEEEE------cCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 49 EGSFDYAFV------DADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 49 ~~~fD~Ifi------D~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
...|+++++ |........+++.++.++.|||.+|.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 356888875 23222345588999999999999876
No 397
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=56.52 E-value=45 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=25.1
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
|-+|.-.+.|+-|+.-.|.+.+|-++.--+.-. -...|+|++.+..
T Consensus 263 E~dPrEveAakynLnYigmDGNIaClVNGAGLA----------MATmDiIkLnGGe 308 (412)
T KOG1447|consen 263 ENDPREVEAAKYNLNYIGMDGNIACLVNGAGLA----------MATMDIIKLNGGE 308 (412)
T ss_pred ccCchhhhhhhcCcceeeccCceEEEEccchhh----------hheeeeEEecCCC
Confidence 345556666666666666665555444333211 1356777776654
No 398
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.30 E-value=49 Score=25.47 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=45.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------------c
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------Y 64 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----------------~ 64 (142)
+.++|+++.+++.-+.|+. + .++.+|..++-..- -..+|+++..+++.. +
T Consensus 23 ~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~gg~PCq~fS~ag~~~~~~d~r~~L~ 89 (315)
T TIGR00675 23 VFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLGGFPCQPFSIAGKRKGFEDTRGTLF 89 (315)
T ss_pred EEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEecCCCcccchhcccCCCCCchhhHH
Confidence 4689999999999888762 2 45567887754321 235899987654311 2
Q ss_pred HHHHHHHHhcccCCeEEEEeccc
Q 032355 65 CNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
..+++. .+.++|. +++++|+-
T Consensus 90 ~~~~r~-i~~~~P~-~~v~ENV~ 110 (315)
T TIGR00675 90 FEIVRI-LKEKKPK-FFLLENVK 110 (315)
T ss_pred HHHHHH-HhhcCCC-EEEeeccH
Confidence 233333 3456776 77888885
No 399
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=56.16 E-value=92 Score=24.67 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=42.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcccCCCceeEEEEcCCCcC-----------cHHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------YCNYHE 69 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~-~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~-----------~~~~~~ 69 (142)
++++|.+++..+.|++ +|.. .+.... .+..+.+..+. ....+|++|--..... ....++
T Consensus 213 vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~ 283 (393)
T TIGR02819 213 VIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLN 283 (393)
T ss_pred EEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----CCCCCcEEEECCCCccccccccccccchHHHHH
Confidence 4456777777777765 4542 222111 23334344332 1346998873222110 124688
Q ss_pred HHHhcccCCeEEEEecc
Q 032355 70 RLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 70 ~~~~~L~~gG~iv~dn~ 86 (142)
.+.+++++||.++.-.+
T Consensus 284 ~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 284 SLMEVTRVGGAIGIPGL 300 (393)
T ss_pred HHHHHhhCCCEEEEeee
Confidence 88999999999987444
No 400
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=55.97 E-value=37 Score=21.60 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=19.7
Q ss_pred ceeEEEEcCCC-----------------cCcHHHHHHHHhcccCCeEE
Q 032355 51 SFDYAFVDADK-----------------DNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 51 ~fD~IfiD~~~-----------------~~~~~~~~~~~~~L~~gG~i 81 (142)
+||+|+-.||. +-|.-+++.+.++| +|.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~ 47 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYL 47 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeE
Confidence 47777777652 12555778888888 7776
No 401
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=55.95 E-value=68 Score=22.42 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
++..+|-++...+..+..++..|. .+. ...++.+.+..+. ...||+|++|...+. ..+.++.+.+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~--~v~-~~~~~~~~~~~~~-----~~~~dlvild~~~~~~~g~~~~~~lr~ 68 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGF--VVD-LADNGLNGYHLAM-----TGDYDLIILDIMLPDVNGWDIVRMLRS 68 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 367789999999989998987765 233 3355555555442 457999999975433 2344444443
No 402
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=55.77 E-value=75 Score=24.55 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=40.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC-
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG- 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~--~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g- 78 (142)
|++++.+++..+.+++ +|...-+.... .+..+.+..+. .+.+|++| |+.- -...+..+.+.+++|
T Consensus 215 vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~ 282 (369)
T cd08301 215 IIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-----GGGVDYSF-ECTG--NIDAMISAFECVHDGW 282 (369)
T ss_pred EEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-----CCCCCEEE-ECCC--ChHHHHHHHHHhhcCC
Confidence 6788888888777754 45432222221 12233344432 33699776 5431 244566677888996
Q ss_pred eEEEEe
Q 032355 79 GIAVYD 84 (142)
Q Consensus 79 G~iv~d 84 (142)
|.++.-
T Consensus 283 g~~v~~ 288 (369)
T cd08301 283 GVTVLL 288 (369)
T ss_pred CEEEEE
Confidence 888753
No 403
>PRK11173 two-component response regulator; Provisional
Probab=55.50 E-value=72 Score=22.59 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~ 72 (142)
+|..+|-++......+..++..|.. +. ...++.+.+..+. ...||+|++|...+.. .+..+.+.
T Consensus 5 ~iLiv~dd~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr 70 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYD--VF-EATDGAEMHQILS-----ENDINLVIMDINLPGKNGLLLARELR 70 (237)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHHh-----hCCCCEEEEcCCCCCCCHHHHHHHHh
Confidence 3677899999999999999887642 32 3345555555442 4579999999754432 33444443
No 404
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=54.57 E-value=70 Score=22.15 Aligned_cols=64 Identities=20% Similarity=0.125 Sum_probs=40.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
++..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -...++.+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~l~~~~-----~~~~dlvi~d~~~~~~~g~~~~~~l~ 67 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGY--VID-AVSDGRDGLYLAL-----KDDYALIILDIMLPGMDGWQILQTLR 67 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 367789899988888888877664 232 3345555555442 467999999975432 233444443
No 405
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=54.35 E-value=98 Score=24.03 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=41.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC-
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG- 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~--~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g- 78 (142)
|++++.+++..+.|++ +|...-+.... .+..+.+..+. .+.+|++| |+.- ....+..+.+.++++
T Consensus 213 Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vi-d~~G--~~~~~~~~~~~~~~~~ 280 (368)
T TIGR02818 213 IIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----DGGVDYSF-ECIG--NVNVMRAALECCHKGW 280 (368)
T ss_pred EEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----CCCCCEEE-ECCC--CHHHHHHHHHHhhcCC
Confidence 7788899988887754 45432222221 12223333332 23699887 5432 244577778889886
Q ss_pred eEEEEe
Q 032355 79 GIAVYD 84 (142)
Q Consensus 79 G~iv~d 84 (142)
|.++.-
T Consensus 281 G~~v~~ 286 (368)
T TIGR02818 281 GESIII 286 (368)
T ss_pred CeEEEE
Confidence 877653
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=54.28 E-value=45 Score=25.03 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=36.8
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.+|.+++..+.+++ .|. +.....+. +. -...|+||+-.+.....+.++.+.+.++++.+
T Consensus 26 V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~~----------~~~aDlVilavp~~~~~~~~~~l~~~l~~~~i- 86 (279)
T PRK07417 26 VYGVSRRESTCERAIE----RGL---VDEASTDL-SL----------LKDCDLVILALPIGLLLPPSEQLIPALPPEAI- 86 (279)
T ss_pred EEEEECCHHHHHHHHH----CCC---cccccCCH-hH----------hcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcE-
Confidence 6778888877766653 222 11111111 11 13578999877655556667777777776644
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
+.|
T Consensus 87 i~d 89 (279)
T PRK07417 87 VTD 89 (279)
T ss_pred EEe
Confidence 444
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=54.00 E-value=62 Score=26.99 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EE-------------ccHHHH-HHHHhhcccCCCceeEEEEcCCCcC-
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEALSV-LDQLLKYSENEGSFDYAFVDADKDN- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~--~~-------------~da~~~-l~~~~~~~~~~~~fD~IfiD~~~~~- 63 (142)
+|+.+|.+++..+.+++ +|.. .+.+ .. .+..+- ...+.+ .-..+|+|+--+..+.
T Consensus 190 ~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~---~~~gaDVVIetag~pg~ 261 (509)
T PRK09424 190 IVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE---QAKEVDIIITTALIPGK 261 (509)
T ss_pred EEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHHHHHHHHHHh---ccCCCCEEEECCCCCcc
Confidence 37899999999998887 3432 1111 11 111111 111110 0146999997654322
Q ss_pred -cHHH-HHHHHhcccCCeEEEEecc
Q 032355 64 -YCNY-HERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 64 -~~~~-~~~~~~~L~~gG~iv~dn~ 86 (142)
.+.. .+.+.+.++|||+|+.=.+
T Consensus 262 ~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 262 PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 2334 5889999999999876444
No 408
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=53.84 E-value=80 Score=26.90 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=41.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~--~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
.++.+|.|++.++.+++ . ...++.||+.+ .+.+. .-++.|++++-.+.+......-...+.+.|+
T Consensus 425 ~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~a-----gi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 425 KMTVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESA-----GAAKAEVLINAIDDPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CEEEEECCHHHHHHHHh----c----CCeEEEEeCCCHHHHHhc-----CCCcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 37889999999998875 2 25789999865 34432 1357888887554322111111222344566
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
-.+++
T Consensus 492 ~~iia 496 (621)
T PRK03562 492 LQIIA 496 (621)
T ss_pred CeEEE
Confidence 55554
No 409
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=53.74 E-value=1.5e+02 Score=25.91 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=42.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~ 73 (142)
|..+|-++.......+.++..|.. +. ...+..+.+..+.+ ....||+|+++.+...-......+..
T Consensus 700 ILvVddd~~~~~~l~~~L~~~G~~--v~-~~~s~~~al~~l~~---~~~~~DlVll~~~~~~g~~l~~~l~~ 765 (828)
T PRK13837 700 VLLVEPDDATLERYEEKLAALGYE--PV-GFSTLAAAIAWISK---GPERFDLVLVDDRLLDEEQAAAALHA 765 (828)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHh
Confidence 678999999999999999888753 33 34555555555431 13459999995443333444555543
No 410
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.59 E-value=52 Score=25.17 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHh-cccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~-~L~~gG~iv~ 83 (142)
+.+|+||+-.+.....+.++.+.+ .+.++..++.
T Consensus 70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 468999997766566777888887 8887775543
No 411
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=53.31 E-value=27 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=11.3
Q ss_pred CCceeEEEEcCCCc
Q 032355 49 EGSFDYAFVDADKD 62 (142)
Q Consensus 49 ~~~fD~IfiD~~~~ 62 (142)
.+.||+|++|.+..
T Consensus 210 ~~~yD~ViiD~pp~ 223 (274)
T TIGR03029 210 MGDYDVVIVDTPSA 223 (274)
T ss_pred HhcCCEEEEeCCCc
Confidence 35799999999753
No 412
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=53.19 E-value=83 Score=24.24 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=47.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
+++.-.+.+..++|++ .|...-|.....|..+-+..+. .+...|.++ |+-- .+.|..-+..|+++|.+
T Consensus 174 tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiT----ngKGVd~vy-DsvG---~dt~~~sl~~Lk~~G~m 241 (336)
T KOG1197|consen 174 TIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKIT----NGKGVDAVY-DSVG---KDTFAKSLAALKPMGKM 241 (336)
T ss_pred EEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhcc----CCCCceeee-cccc---chhhHHHHHHhccCceE
Confidence 3455556666666665 4666668888888777666653 256799888 5531 33466677889999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
|.
T Consensus 242 VS 243 (336)
T KOG1197|consen 242 VS 243 (336)
T ss_pred EE
Confidence 86
No 413
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=53.01 E-value=41 Score=24.27 Aligned_cols=55 Identities=4% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCeeEEeee
Q 032355 67 YHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 130 (142)
Q Consensus 67 ~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 130 (142)
.+..+...++|..++++-+.+-.|...... +..+.+++|++.....++..+..+|
T Consensus 33 ~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~---------e~~e~l~Rf~~If~~~~~~~~~~Vp 87 (195)
T cd08166 33 TYHLALNFVQPDIVIFLGDLMDEGSIANDD---------EYYSYVQRFINIFEVPNGTKIIYLP 87 (195)
T ss_pred HHHHHHhccCCCEEEEeccccCCCCCCCHH---------HHHHHHHHHHHHhcCCCCCcEEEEC
Confidence 344455667778777777766655432110 0334566666433344444444444
No 414
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=52.91 E-value=51 Score=23.60 Aligned_cols=53 Identities=13% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 18 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 18 ~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.+.+.|+ .++|+.-+. + + ..|.+|++-...---++..+.+.+..+.||.+|+.
T Consensus 38 al~~~gi--~vDvv~~~~-d----L-------~~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 38 ALRELGI--PVDVVSPDD-D----L-------SGYKLLVLPSLYILSPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHTTT----EEEE-TTS--------------TT-SEEEES--SC--HHH---HHHHHT-SS-EEE-
T ss_pred HHHHcCC--ceEEecCcC-C----c-------ccCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEE
Confidence 3444555 478887664 2 2 35889987655444567778888999999999985
No 415
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.84 E-value=51 Score=26.34 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHhcccCCeEEEEe
Q 032355 15 GLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 15 a~~~~~~~~~~~-~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~~L~~gG~iv~d 84 (142)
.++|++.+|+.. .++++ +..+-+ .+.+|+|++=-+|.. ....+..+...|.||+.|++-
T Consensus 80 ~~~n~~~n~~~~~~~~~~--~~~~~~---------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 80 TRENLRLNGIDESSVKFL--DSTADY---------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHHHcCCCcccceee--cccccc---------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 478999998863 35555 332222 456999999887642 234466667799999998763
No 416
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=52.81 E-value=28 Score=24.65 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEeccc
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 87 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~ 87 (142)
+..|++++=- +..+....+.|+|||+++++...
T Consensus 66 ~~~D~lva~d-----~~~~~~~~~~l~~gg~ii~ns~~ 98 (197)
T PRK06274 66 GQADLLLALE-----PAEVARNLHFLKKGGKIIVNAYA 98 (197)
T ss_pred CCCCEEEEcC-----HHHHHHHHhhcCCCcEEEEECCC
Confidence 4678877522 22234556789999999998543
No 417
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=52.49 E-value=95 Score=24.23 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=39.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc---cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~---da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
|++++.+++..+.+++ .|...-+..... +..+.+..+. .+..+|+|+ |+.- .....++.+.+.|+++
T Consensus 231 vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~ 300 (384)
T cd08265 231 VIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----KGWGADIQV-EAAG-APPATIPQMEKSIAIN 300 (384)
T ss_pred EEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcC
Confidence 5677777765555543 454321221111 2333333332 235699887 6532 2344677788899999
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
|.++.
T Consensus 301 G~~v~ 305 (384)
T cd08265 301 GKIVY 305 (384)
T ss_pred CEEEE
Confidence 99875
No 418
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=52.23 E-value=22 Score=24.52 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=24.1
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEecccc
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~~ 88 (142)
+.+|++++= .+..+....+.|+|||+++++....
T Consensus 56 ~~~Dilv~l-----~~~~~~~~~~~l~~~g~vi~ns~~~ 89 (173)
T PF01558_consen 56 GEADILVAL-----DPEALERHLKGLKPGGVVIINSSLV 89 (173)
T ss_dssp SSESEEEES-----SHHHHHHCGTTCETTEEEEEETTT-
T ss_pred CCCCEEEEc-----CHHHHHHHhcCcCcCeEEEEECCCC
Confidence 578888762 1344556678899999999987654
No 419
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=52.10 E-value=76 Score=21.84 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=41.7
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++...+..+..++..|.. +. ...++.+.+..+. ...+|+|++|...+. -....+.+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~i~~ 68 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFS--VD-WFTQGRQGKEALY-----SAPYDAVILDLTLPGMDGRDILREWRE 68 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHh-----hCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 3677888888888888888876542 33 3456555555442 457999999975432 2344444443
No 420
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=52.05 E-value=26 Score=20.31 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc-HHHHHHHHhcccCCeEEEE
Q 032355 9 RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~-~~~~~~~~~~L~~gG~iv~ 83 (142)
|.=+....+.++..|. .|+-..... +.++ ...==+|++++...-- +.-++.+.+++..||.+++
T Consensus 4 p~G~~a~~~~L~~~g~--~v~~~~~~~-~~l~--------~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 4 PNGTYALYQLLEEQGV--KVERWRKPY-EALE--------ADDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred chHHHHHHHHHHHCCC--eeEEecccH-HHhC--------CCCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEE
Confidence 4444555667777765 355554542 3332 1223456677653333 3667888899999999875
No 421
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=51.76 E-value=55 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceeEEEEcCC--CcCcHHHHHHHHhcccCCeEEEEecc
Q 032355 51 SFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 51 ~fD~IfiD~~--~~~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
.|-++++-+. ..--.+-.+.+.+.|..||.|++|+.
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 5888888653 22345667788889999999999988
No 422
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=51.42 E-value=22 Score=24.02 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=26.7
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.+|++|++-.....-.+..+.+.+..+.||.+++.
T Consensus 52 ~~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 52 SGYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred ccCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 46999998554444466778888999999998874
No 423
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=51.25 E-value=20 Score=29.54 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=32.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 37 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~ 37 (142)
.|+++|.-.-|.+.|++-..++|.+++|+++..-..+
T Consensus 91 ~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 91 SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred eEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 4899999999999999999999999999999765544
No 424
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=51.23 E-value=41 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.7
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
..+|+||+-.........++.+.+.+.++.+|+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5799999977666677888888888888877664
No 425
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=51.19 E-value=25 Score=24.93 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCceeEEEE-------------cCC-CcCcHHHHHHHHhcccCCeEEEE
Q 032355 49 EGSFDYAFV-------------DAD-KDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 49 ~~~fD~Ifi-------------D~~-~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
.++||++.+ |+- ......-+..+...|+|||.+..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEE
Confidence 568999764 221 11235556667789999999876
No 426
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=51.16 E-value=1.3e+02 Score=24.22 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=44.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..|.. + ....++.+.+..+. ...||+|++|...+. -.+.++.+..
T Consensus 5 ~ILiVdd~~~~~~~L~~~L~~~g~~--v-~~~~s~~~al~~l~-----~~~~DlvllD~~lp~~dgl~~l~~ir~ 71 (469)
T PRK10923 5 IVWVVDDDSSIRWVLERALAGAGLT--C-TTFENGNEVLEALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (469)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHh-----cCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 3678899999999999999887753 3 34556666666553 467999999975433 2344555543
No 427
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=51.08 E-value=82 Score=21.94 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=42.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC----cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~----~~~~~~~~~~ 73 (142)
+|..+|-++......+..++..|+ .+. ...++.+.+..+. ...+|+|++|...+. ..++++.+..
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~~~g~~~~~~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGY--QVT-TYADRPSAMQAFR-----QRLPDLAIIDIGLGEEIDGGFMLCQDLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc--EEE-EecCHHHHHHHHH-----hCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 367788899888888888887664 233 3446666655543 457999999975432 2444555543
No 428
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=51.01 E-value=79 Score=21.75 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=41.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
+|..+|-++......+..++..|.. +. ...++.+.+..+. ...+|+|++|...+. ..+.++.+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~--v~-~~~~~~~~~~~~~-----~~~~d~illd~~~~~~~g~~~~~~l~ 67 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYA--CD-CASTAREAEALLE-----SGHYSLVVLDLGLPDEDGLHLLRRWR 67 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHH-----hCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 3678899999999899989887642 32 3445555555442 356999999975433 233444443
No 429
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=50.98 E-value=85 Score=24.20 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=37.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
++.++.+++..+.+++ .|...-+.....+..+.+.... .+..+|+|+ |.-.. ....+.+.+.|+++|.+
T Consensus 215 vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~~d~vl-d~vg~--~~~~~~~~~~l~~~G~~ 283 (367)
T cd08263 215 IIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRGVDVVV-EALGK--PETFKLALDVVRDGGRA 283 (367)
T ss_pred EEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCCCCEEE-EeCCC--HHHHHHHHHHHhcCCEE
Confidence 5566666666555532 3432111222223222233321 235699998 54322 23567788899999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 284 v~ 285 (367)
T cd08263 284 VV 285 (367)
T ss_pred EE
Confidence 74
No 430
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=50.93 E-value=43 Score=27.67 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEE----cC-----CC----cCcHHHH
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV----DA-----DK----DNYCNYH 68 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~Ifi----D~-----~~----~~~~~~~ 68 (142)
|+++|.|+-.++.....-.+ -....++...|.... .+ +++.||+|+. |+ .. ..-...+
T Consensus 74 I~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l--~f-----edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~ 144 (482)
T KOG2352|consen 74 ITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQL--VF-----EDESFDIVIDKGTLDALFEDEDALLNTAHVSNML 144 (482)
T ss_pred ceeccccHHHHHHHHhcccc--CCcceEEEEecchhc--cC-----CCcceeEEEecCccccccCCchhhhhhHHhhHHH
Confidence 78999999998887653322 124678888887654 22 3678998874 22 11 0123456
Q ss_pred HHHHhcccCCeEEEEecc
Q 032355 69 ERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 69 ~~~~~~L~~gG~iv~dn~ 86 (142)
..+.+.|++||..+.=..
T Consensus 145 ~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 145 DEVSRVLAPGGKYISVTL 162 (482)
T ss_pred hhHHHHhccCCEEEEEEe
Confidence 777889999999765433
No 431
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=50.92 E-value=58 Score=23.26 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 8 NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
-...++.+++.++..+-.-+++.+.....+..+.+ -.+||+|+...+
T Consensus 73 G~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~------~~~~dvVi~~~~ 119 (197)
T cd01492 73 GQNRAEASLERLRALNPRVKVSVDTDDISEKPEEF------FSQFDVVVATEL 119 (197)
T ss_pred CchHHHHHHHHHHHHCCCCEEEEEecCccccHHHH------HhCCCEEEECCC
Confidence 34567788888888765545666665544333333 247999996544
No 432
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=50.80 E-value=18 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=21.3
Q ss_pred CceeEEEEcCC-CcCc------HHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDAD-KDNY------CNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~-~~~~------~~~~~~~~~~L~~gG~iv~ 83 (142)
.+||+|+++-- .... ..+++.+.+.++.||-+++
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlm 106 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLM 106 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEE
Confidence 58999998642 2222 4667777787777877765
No 433
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.28 E-value=47 Score=22.60 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=43.6
Q ss_pred EEEEeCChhHHHHHHHHHHHc------CCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcc
Q 032355 2 ITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 75 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~------~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L 75 (142)
|+....+++.++..+++-... .+..++.+ ..|..+.+ +..|+|++-.+.....++++.+.+++
T Consensus 25 V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~~ad~IiiavPs~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 25 VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------EDADIIIIAVPSQAHREVLEQLAPYL 93 (157)
T ss_dssp EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------TT-SEEEE-S-GGGHHHHHHHHTTTS
T ss_pred EEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------CcccEEEecccHHHHHHHHHHHhhcc
Confidence 556667776666665533211 11234544 45554443 35799999888777889999999999
Q ss_pred cCCeEEEE
Q 032355 76 KVGGIAVY 83 (142)
Q Consensus 76 ~~gG~iv~ 83 (142)
+++-.++.
T Consensus 94 ~~~~~ii~ 101 (157)
T PF01210_consen 94 KKGQIIIS 101 (157)
T ss_dssp HTT-EEEE
T ss_pred CCCCEEEE
Confidence 88877765
No 434
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=50.06 E-value=6.7 Score=25.29 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEe
Q 032355 49 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
.+.||+|| |..-.....++..+.++| |||.++.-
T Consensus 17 ~~~~D~Vi-D~~g~~~~~~~~~~~~~l-~~G~~v~i 50 (127)
T PF13602_consen 17 PGGVDVVI-DTVGQTGESLLDASRKLL-PGGRVVSI 50 (127)
T ss_dssp TS-EEEEE-ESS-CCHHHCGGGCCCTE-EEEEEEEE
T ss_pred CCCceEEE-ECCCCccHHHHHHHHHHC-CCCEEEEE
Confidence 57899998 553222344557778888 99998754
No 435
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=49.83 E-value=1.3e+02 Score=24.00 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=15.0
Q ss_pred CEEEEeCChhHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLP 17 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~ 17 (142)
+|+++|+|++.++.+++
T Consensus 24 ~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 24 EVVALDILPSRVAMLND 40 (388)
T ss_pred cEEEEECCHHHHHHHHc
Confidence 48999999999988876
No 436
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=49.50 E-value=89 Score=21.89 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=41.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
++..+|-++...+..+..+...|. .+. ...+..+.+..+. ...+|+|++|...+. ..+.++.+.
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvl~d~~~~~~~g~~~~~~l~ 77 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASY--ATT-LLSHGDEVLPYVR-----QTPPDLILLDLMLPGTDGLTLCREIR 77 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----hCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 367789999999999998988764 233 3345555555442 456999999975433 234444443
No 437
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=49.34 E-value=90 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=22.6
Q ss_pred CceeEEEE-cCCCcCcHHHHHHHHhcccCCeEEEEec
Q 032355 50 GSFDYAFV-DADKDNYCNYHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 50 ~~fD~Ifi-D~~~~~~~~~~~~~~~~L~~gG~iv~dn 85 (142)
+.+|+++. ++. ...++...+.|++||.++.-.
T Consensus 222 ~~~d~~i~~~~~----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 222 EPLDAAILFAPA----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ccceEEEECCCc----HHHHHHHHHhhCCCcEEEEEe
Confidence 35887654 332 346788889999999998643
No 438
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=49.31 E-value=79 Score=22.07 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred cEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC------cHHHH-HHHHhcccCCeEEEEecccc
Q 032355 27 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYH-ERLMKLLKVGGIAVYDNTLW 88 (142)
Q Consensus 27 ~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~------~~~~~-~~~~~~L~~gG~iv~dn~~~ 88 (142)
.-.++.||+.+.++.+.. -+.+.-++=.|-...+ ...++ ..+.++|.|||++|...-+.
T Consensus 72 ~~~~ilGdi~~tl~~~~~---~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 72 EEDLILGDIRETLPALAR---FGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp GGGEEES-HHHHHHHHHH---H-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred hHheeeccHHHHhHHHHh---cCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 347899999999987421 1344555555543221 11222 33447899999999875543
No 439
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=49.12 E-value=87 Score=21.69 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=42.2
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
++..+|-++......+..++..|. .+. ...++.+.+..+. ...||+|++|...+. ...+++.+..
T Consensus 4 ~iLlv~d~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr~ 70 (221)
T PRK10766 4 HILVVEDEPVTRARLQGYFEQEGY--TVS-EAASGAGMREIMQ-----NQHVDLILLDINLPGEDGLMLTRELRS 70 (221)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 367789999998888888888764 233 3445555554442 457999999975432 2345555544
No 440
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=48.46 E-value=1.2e+02 Score=23.23 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=46.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHhcccCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG 78 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~~L~~g 78 (142)
+|..+|-++......++.++.... ..+.....+..+.+..+. ...+|+|++|...+. -.+.++.+.. .++-
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~-~~vv~~a~~~~eal~~l~-----~~~pDlVllD~~mp~~~G~e~l~~l~~-~~~~ 74 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPD-HEVVWVATDGAQAVERCA-----AQPPDVILMDLEMPRMDGVEATRRIMA-ERPC 74 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCC-CEEEEEECCHHHHHHHHh-----ccCCCEEEEcCCCCCCCHHHHHHHHHH-HCCC
Confidence 467889999999999988854321 123334567777666553 457999999975432 3445555544 2333
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
-++++
T Consensus 75 pvivv 79 (337)
T PRK12555 75 PILIV 79 (337)
T ss_pred cEEEE
Confidence 34444
No 441
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=48.23 E-value=89 Score=23.98 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEec
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn 85 (142)
..+|+|| |+.- -...++.+.+.|++||.++.-.
T Consensus 237 ~~~d~vi-d~~g--~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 237 GEFDLII-EATG--VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCCEEE-ECcC--CHHHHHHHHHHccCCcEEEEEe
Confidence 4699888 4432 2346788889999999987643
No 442
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=47.98 E-value=22 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.5
Q ss_pred EEEEeCChhHHHHHHHHHHHc
Q 032355 2 ITAIDVNRETYEIGLPIIKKA 22 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~ 22 (142)
|++-|+|+++++.|++|+..+
T Consensus 80 v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 80 VYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp EEEEES-HHHHHHHHHHHHCC
T ss_pred HhcccCCHHHHHHHHHhhhhc
Confidence 788999999999999998654
No 443
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=47.61 E-value=31 Score=30.17 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.2
Q ss_pred CCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 49 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
+..||++++|.....-++.+..+.+.++-||++++
T Consensus 90 G~t~~~~VlD~~~~l~pn~lar~v~TvrgGG~lvi 124 (758)
T COG1444 90 GRTFDLLVLDLTEGLDPNALARLVGTVRGGGLLVL 124 (758)
T ss_pred chhhheEEEecccCCCHHHHHHHHhheecceEEEE
Confidence 56899999999877778899999999999999886
No 444
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.35 E-value=56 Score=22.94 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=48.2
Q ss_pred EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEE
Q 032355 3 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 82 (142)
Q Consensus 3 ~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv 82 (142)
+++|.||-.+.++|-..-+.|.....+|..-|.-++ .+ ..|..+.+=+...-.+.+-..+..-+..|..++
T Consensus 99 ~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--dl-------~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 99 VGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--DL-------RDYRNVVIFGAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred CceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--cc-------cccceEEEeehHHHHhhhHHHHHhhCcCCCeEE
Confidence 689999999999999998999988899998887664 22 234433332222223333344444566777777
Q ss_pred E
Q 032355 83 Y 83 (142)
Q Consensus 83 ~ 83 (142)
+
T Consensus 170 a 170 (199)
T KOG4058|consen 170 A 170 (199)
T ss_pred E
Confidence 6
No 445
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=47.28 E-value=1.3e+02 Score=23.34 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC--CcC----cHHHHHHHHhcccCC
Q 032355 10 ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVG 78 (142)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~--~~~----~~~~~~~~~~~L~~g 78 (142)
+.++.+++++++.+...+|++-..+..+....+.-.+......|+|.+|-- .+. -++.++.+.+.++..
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~ 262 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGR 262 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCC
Confidence 466777777766666667999999877766555200001156899999975 111 355666666766533
No 446
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.12 E-value=1.4e+02 Score=23.57 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHcCCCCcEEEE-EccH----HHHHHHHhhcccCCCceeEEEEcCC-----CcCcHHHHHHHHhcccCC
Q 032355 9 RETYEIGLPIIKKAGVDHKINFI-ESEA----LSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~v~~~-~~da----~~~l~~~~~~~~~~~~fD~IfiD~~-----~~~~~~~~~~~~~~L~~g 78 (142)
+.++++.+.+-+++|.. -|.-. -+|. .+.++... ...||+|++|.. +.+.-+-++.+.+.++|.
T Consensus 180 AaAiEQL~~w~er~gv~-vI~~~~G~DpAaVafDAi~~Ak-----ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~ 253 (340)
T COG0552 180 AAAIEQLEVWGERLGVP-VISGKEGADPAAVAFDAIQAAK-----ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKD 253 (340)
T ss_pred HHHHHHHHHHHHHhCCe-EEccCCCCCcHHHHHHHHHHHH-----HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccc
Confidence 34566666666776542 22211 1222 22333332 468999999974 333334455555555443
Q ss_pred e------EEEE-ecccccccccCCCCCCCCCCCcchHHHHHHHHHHhh
Q 032355 79 G------IAVY-DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 119 (142)
Q Consensus 79 G------~iv~-dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (142)
- ++++ |...-.. .....+.|++.+.
T Consensus 254 ~~~ap~e~llvlDAttGqn----------------al~QAk~F~eav~ 285 (340)
T COG0552 254 DPDAPHEILLVLDATTGQN----------------ALSQAKIFNEAVG 285 (340)
T ss_pred cCCCCceEEEEEEcccChh----------------HHHHHHHHHHhcC
Confidence 3 4544 5443211 4456788988654
No 447
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=46.56 E-value=38 Score=24.06 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEecc
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
++.|++++=-+ ..+ ....+.|+|||+++++..
T Consensus 67 ~~~D~lva~d~----~~~-~~~~~~lk~gg~ii~n~~ 98 (197)
T PRK06853 67 GKADLLLAFEP----LEA-LRYLPYLKKGGKVVVNTQ 98 (197)
T ss_pred CCCCEEEEeCH----HHH-HHHHHhcCCCcEEEEECC
Confidence 37888875221 222 345567899999999854
No 448
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=46.54 E-value=31 Score=25.22 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=17.1
Q ss_pred EEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 28 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 28 v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+++.+.|..+.+... +.+-|+|++|||.
T Consensus 160 ~~i~~~d~~~~~~~~------~~~~d~vYlDPPY 187 (260)
T PF02086_consen 160 VEIENRDFDEVIERY------DSPNDFVYLDPPY 187 (260)
T ss_dssp EEEEEC-CHGGGTT--------TTE-EEEE--S-
T ss_pred ceeEehhHHHHHhhc------cCCCeEEEEcCcc
Confidence 889999988776442 3578999999984
No 449
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.40 E-value=37 Score=25.67 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=5.1
Q ss_pred ceeEEEEcC
Q 032355 51 SFDYAFVDA 59 (142)
Q Consensus 51 ~fD~IfiD~ 59 (142)
.+|+|++|.
T Consensus 272 ~~d~vliDt 280 (282)
T TIGR03499 272 DKDLILIDT 280 (282)
T ss_pred CCCEEEEeC
Confidence 356666654
No 450
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=46.18 E-value=1.3e+02 Score=22.81 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=37.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.+++ +|...-+.....+..+.+..+. ..+.+|+|+--... ...+..+.+.|+++|.+
T Consensus 189 v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~ 257 (340)
T TIGR00692 189 VIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGEGVDVFLEMSGA---PKALEQGLQAVTPGGRV 257 (340)
T ss_pred EEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCCCCCEEEECCCC---HHHHHHHHHhhcCCCEE
Confidence 4455555555554443 3432112222334434343332 23569999843221 34567778889999988
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 258 v~ 259 (340)
T TIGR00692 258 SL 259 (340)
T ss_pred EE
Confidence 75
No 451
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=46.09 E-value=74 Score=20.00 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 4 AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 4 ~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
.+|.+++..+.+. +..|. . ...|..+.+.. ...|+|++-.+.....++ +...++.|--+++
T Consensus 31 v~d~~~~~~~~~~---~~~~~----~-~~~~~~~ll~~--------~~~D~V~I~tp~~~h~~~---~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 31 VCDPDPERAEAFA---EKYGI----P-VYTDLEELLAD--------EDVDAVIIATPPSSHAEI---AKKALEAGKHVLV 91 (120)
T ss_dssp EECSSHHHHHHHH---HHTTS----E-EESSHHHHHHH--------TTESEEEEESSGGGHHHH---HHHHHHTTSEEEE
T ss_pred EEeCCHHHHHHHH---HHhcc----c-chhHHHHHHHh--------hcCCEEEEecCCcchHHH---HHHHHHcCCEEEE
Confidence 5678877766553 34444 2 66677776653 479999998875444444 4455556666666
Q ss_pred e
Q 032355 84 D 84 (142)
Q Consensus 84 d 84 (142)
+
T Consensus 92 E 92 (120)
T PF01408_consen 92 E 92 (120)
T ss_dssp E
T ss_pred E
Confidence 5
No 452
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=45.96 E-value=22 Score=27.60 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.3
Q ss_pred CCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 25 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 25 ~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
.++-+|+.||+.+.-+-+. .....+|+|++|++..
T Consensus 161 PpkSsF~~gDv~~~~qll~---~H~llpdlIIiDPPW~ 195 (366)
T KOG2356|consen 161 PPKSSFHVGDVKDIEQLLR---AHDLLPDLIIIDPPWF 195 (366)
T ss_pred CCccceecccHHHHHHHhH---HHhhcCCeEEeCCCCC
Confidence 4567899999876533221 1234579999999743
No 453
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=45.62 E-value=1.1e+02 Score=21.81 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=38.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.+++ .|...-+.....+..+.+. .. ..+.+|+++.-... ...++.+.+.++++|.+
T Consensus 161 v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~ 228 (271)
T cd05188 161 VIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGGADVVIDAVGG---PETLAQALRLLRPGGRI 228 (271)
T ss_pred EEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCCCCEEEECCCC---HHHHHHHHHhcccCCEE
Confidence 5677777766666543 2322212222222222222 11 24679999854332 24567778889999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 229 v~ 230 (271)
T cd05188 229 VV 230 (271)
T ss_pred EE
Confidence 75
No 454
>PRK14974 cell division protein FtsY; Provisional
Probab=45.57 E-value=1.5e+02 Score=23.31 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCcC--cHHH---HHHHHhcccCCeEEEEecc
Q 032355 50 GSFDYAFVDADKDN--YCNY---HERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 50 ~~fD~IfiD~~~~~--~~~~---~~~~~~~L~~gG~iv~dn~ 86 (142)
..+|+|++|..-.. -..+ ++.+.+.++|..++++-++
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecc
Confidence 46999999986332 2333 3444456678876665444
No 455
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=45.44 E-value=1.7e+02 Score=24.18 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=34.6
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
+++-|.++.+...++.|+...+.. +......+|...-.... ...+||.|+.+++
T Consensus 248 ~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~-----~~~~~D~v~~NpP 302 (501)
T TIGR00497 248 YYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWE-----NENGFEVVVSNPP 302 (501)
T ss_pred EEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcccc-----ccccCCEEeecCC
Confidence 578899999999999997665543 23444455543311111 1346999998875
No 456
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=45.40 E-value=86 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=22.2
Q ss_pred CCceeEEEEcCC----CcCcHHHHHHHHhcccCCeEEEEe
Q 032355 49 EGSFDYAFVDAD----KDNYCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 49 ~~~fD~IfiD~~----~~~~~~~~~~~~~~L~~gG~iv~d 84 (142)
...||++|+|-- ...-+.+-.++.+..+++|..++-
T Consensus 200 k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~Iyl 239 (441)
T COG4098 200 KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYL 239 (441)
T ss_pred HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEE
Confidence 357999999852 222233334455677788877763
No 457
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=45.14 E-value=1e+02 Score=21.29 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=41.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|..+|-++...+..+..+...|.. +. ...+..+.+..+. ...+|+|++|...+. ..+.++.+..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~~~~~~~-----~~~~dlvl~d~~~~~~~g~~~~~~l~~ 71 (228)
T PRK11083 5 TILLVEDEQAIADTLVYALQSEGFT--VE-WFERGLPALDKLR-----QQPPDLVILDVGLPDISGFELCRQLLA 71 (228)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3677898998888888888776642 33 3345555554442 457999999975433 2344554443
No 458
>PRK08507 prephenate dehydrogenase; Validated
Probab=45.06 E-value=1e+02 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=22.2
Q ss_pred eeEEEEcCCCcCcHHHHHHHHhcccCCeEEE
Q 032355 52 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 82 (142)
Q Consensus 52 fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv 82 (142)
.|+||+-.+.....+.++.+.+ ++++.+|+
T Consensus 59 aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 59 CDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred CCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 7999988776666777777777 77776554
No 459
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.04 E-value=76 Score=19.82 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccC
Q 032355 10 ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 77 (142)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~ 77 (142)
-+++..++.++..|++ +++...+..+.-. . ...||+|++-|.- ...++.+.+...+
T Consensus 14 ~~~~ki~~~~~~~~~~--~~v~~~~~~~~~~-~------~~~~Diil~~Pqv---~~~~~~i~~~~~~ 69 (96)
T cd05564 14 ILVKKMKKAAEKRGID--AEIEAVPESELEE-Y------IDDADVVLLGPQV---RYMLDEVKKKAAE 69 (96)
T ss_pred HHHHHHHHHHHHCCCc--eEEEEecHHHHHH-h------cCCCCEEEEChhH---HHHHHHHHHHhcc
Confidence 3566778888888874 8888888877532 2 3579999987653 3345556554433
No 460
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=45.00 E-value=1.4e+02 Score=23.00 Aligned_cols=70 Identities=26% Similarity=0.449 Sum_probs=40.0
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhccc-CC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK-VG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~--da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~-~g 78 (142)
|++++.+++..+.+++ +|...-+..... +..+.+..+. ++.+|+|+ |..- ....++.+.+.|+ ++
T Consensus 211 v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-----~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~ 278 (365)
T cd05279 211 IIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-----DGGVDYAF-EVIG--SADTLKQALDATRLGG 278 (365)
T ss_pred EEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----CCCCcEEE-ECCC--CHHHHHHHHHHhccCC
Confidence 5666777777666643 344322222222 3333333332 35699988 5431 2446777888898 99
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
|.++.
T Consensus 279 G~~v~ 283 (365)
T cd05279 279 GTSVV 283 (365)
T ss_pred CEEEE
Confidence 99875
No 461
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=44.92 E-value=92 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
...|+||+-.+.......++.+.+.++++.+++.
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 3579999876654456666777777788776653
No 462
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=44.71 E-value=2.5e+02 Score=25.64 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=42.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
|..+|-++......+..++..|.. +. ...++.+.+..+. ..+||+|++|...+. -.+.++.+..
T Consensus 961 iLivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~-----~~~~dlil~D~~mp~~~g~~~~~~i~~ 1026 (1197)
T PRK09959 961 ILIADDHPTNRLLLKRQLNLLGYD--VD-EATDGVQALHKVS-----MQHYDLLITDVNMPNMDGFELTRKLRE 1026 (1197)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHhh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 677888999999999999887752 32 3455666665552 567999999975443 2334444443
No 463
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=44.64 E-value=25 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.1
Q ss_pred HHHHHHHHhcccCCeEEEEe-ccccccc
Q 032355 65 CNYHERLMKLLKVGGIAVYD-NTLWGGT 91 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~d-n~~~~g~ 91 (142)
...+..+.+.|||||++++. +.-..|.
T Consensus 146 ~~vna~vf~~LKPGGv~~V~dH~a~pG~ 173 (238)
T COG4798 146 AKVNAAVFKALKPGGVYLVEDHRADPGS 173 (238)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccccCCC
Confidence 45567778999999998764 4444444
No 464
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.35 E-value=36 Score=25.98 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.2
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
+.||+||+-.......+.++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 5799999976555556778888888988887764
No 465
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.28 E-value=1.8e+02 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred CceeEEEEcCCCcC--cHHHHHHHH---hcccCCeEEEE
Q 032355 50 GSFDYAFVDADKDN--YCNYHERLM---KLLKVGGIAVY 83 (142)
Q Consensus 50 ~~fD~IfiD~~~~~--~~~~~~~~~---~~L~~gG~iv~ 83 (142)
..||+||+|.+-.. -...++.+. +...|.-++++
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLV 219 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFV 219 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEE
Confidence 57999999986332 223444443 45566654444
No 466
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.07 E-value=1.4e+02 Score=22.47 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHc--------CCC---------CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-
Q 032355 1 MITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~- 62 (142)
+|+.+|.+++.++.+++.+++. ++. .++++. .|..+. -..-|+|+.-.+..
T Consensus 28 ~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a----------~~~aDlVieavpe~~ 96 (287)
T PRK08293 28 DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA----------VKDADLVIEAVPEDP 96 (287)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH----------hcCCCEEEEeccCCH
Confidence 4788999999999887765322 111 133322 232222 13579998765532
Q ss_pred -CcHHHHHHHHhcccCCeEEEE
Q 032355 63 -NYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 63 -~~~~~~~~~~~~L~~gG~iv~ 83 (142)
.-..+++.+.+.++++.+|+.
T Consensus 97 ~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 97 EIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HHHHHHHHHHHhhCCCCCEEEE
Confidence 235567777777777766543
No 467
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=43.97 E-value=1.2e+02 Score=24.04 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=35.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC--cCcHH-HHHHHHhcccCC
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCN-YHERLMKLLKVG 78 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~--~~~~~-~~~~~~~~L~~g 78 (142)
|+.+|.+++..+.+...+ +. .+.....+..+ +... -..+|+|+.-... ...+. +.+...+.++||
T Consensus 193 V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~------l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g 260 (370)
T TIGR00518 193 VTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA------VKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPG 260 (370)
T ss_pred EEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH------HccCCEEEEccccCCCCCCcCcCHHHHhcCCCC
Confidence 677888887765554432 21 12222222222 2222 1368999975421 11122 235555778888
Q ss_pred eEEEE
Q 032355 79 GIAVY 83 (142)
Q Consensus 79 G~iv~ 83 (142)
++|+-
T Consensus 261 ~vIvD 265 (370)
T TIGR00518 261 AVIVD 265 (370)
T ss_pred CEEEE
Confidence 87654
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=43.82 E-value=1.8e+02 Score=23.73 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCceeEEEEcCCCcC-----cHHHHHHHHhcccCCeEEEEec
Q 032355 49 EGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 49 ~~~fD~IfiD~~~~~-----~~~~~~~~~~~L~~gG~iv~dn 85 (142)
...||+|++|.+-.. ...-+..+.+.++|.+++++-+
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvd 221 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVD 221 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEe
Confidence 356999999986422 2223444556777888765533
No 469
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.66 E-value=1.2e+02 Score=22.81 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=41.5
Q ss_pred CEEEEeCChhHHHHHHHHHHHc---CC-----C--------CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC-
Q 032355 1 MITAIDVNRETYEIGLPIIKKA---GV-----D--------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN- 63 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~---~~-----~--------~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~- 63 (142)
+|+.+|.+++.++.+++++... +. . .++++. .+..+. -...|+|+.-.+...
T Consensus 26 ~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~----------~~~aD~Vi~avpe~~~ 94 (288)
T PRK09260 26 QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA----------VADADLVIEAVPEKLE 94 (288)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh----------hcCCCEEEEeccCCHH
Confidence 4789999999999987754331 10 0 112222 222221 235799997554321
Q ss_pred -cHHHHHHHHhcccCCeEEEEe
Q 032355 64 -YCNYHERLMKLLKVGGIAVYD 84 (142)
Q Consensus 64 -~~~~~~~~~~~L~~gG~iv~d 84 (142)
-..++..+.+.++++.+++.+
T Consensus 95 ~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 95 LKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred HHHHHHHHHHhhCCCCcEEEEc
Confidence 134566677788888766543
No 470
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=43.51 E-value=1.4e+02 Score=24.60 Aligned_cols=18 Identities=17% Similarity=-0.016 Sum_probs=13.4
Q ss_pred CEEEEeCChhHHHHHHHH
Q 032355 1 MITAIDVNRETYEIGLPI 18 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~ 18 (142)
+|+..+.+++.++...+.
T Consensus 26 ~V~v~dr~~~~~~~l~~~ 43 (470)
T PTZ00142 26 KISVYNRTYEKTEEFVKK 43 (470)
T ss_pred eEEEEeCCHHHHHHHHHh
Confidence 367888999887776653
No 471
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=43.31 E-value=72 Score=23.00 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=36.7
Q ss_pred ceeEEEEcCCCcCc-HHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhc
Q 032355 51 SFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 120 (142)
Q Consensus 51 ~fD~IfiD~~~~~~-~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (142)
.+|+...|- | ...++.+...|+|..+++.-+.+-++.+.+. +-.+..+.|++.+..
T Consensus 22 rld~~~~D~----YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~----------ef~~~~~RF~~if~~ 78 (193)
T cd08164 22 RLDLFGNDY----FLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDE----------EFAKRADRYRRRFFG 78 (193)
T ss_pred eehhhhhHH----HHHHHHHHHHHhcCCCEEEEeccccCCCcccHH----------HHHHHHHHHHHHhcC
Confidence 455544443 3 4567788889999999999888754432111 144578888887654
No 472
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.11 E-value=1.9e+02 Score=23.83 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=56.1
Q ss_pred EEEEeC-ChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcccCCCceeEEEEcCCCcC--cHHH---HHHH
Q 032355 2 ITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKDN--YCNY---HERL 71 (142)
Q Consensus 2 v~~ve~-~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~----l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~---~~~~ 71 (142)
++++|. .|.++++.+...++.+..---.--..|..++ +..+. ...||+|++|..-+. -.++ +..+
T Consensus 133 lVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak-----~~~~DvvIvDTAGRl~ide~Lm~El~~I 207 (451)
T COG0541 133 LVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK-----EEGYDVVIVDTAGRLHIDEELMDELKEI 207 (451)
T ss_pred EEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH-----HcCCCEEEEeCCCcccccHHHHHHHHHH
Confidence 466676 6788888888888876531111111233333 33332 457999999975321 2333 4455
Q ss_pred HhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHh
Q 032355 72 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 118 (142)
Q Consensus 72 ~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (142)
...++|.=++++-+... | ++.....+.|++.+
T Consensus 208 k~~~~P~E~llVvDam~-G--------------QdA~~~A~aF~e~l 239 (451)
T COG0541 208 KEVINPDETLLVVDAMI-G--------------QDAVNTAKAFNEAL 239 (451)
T ss_pred HhhcCCCeEEEEEeccc-c--------------hHHHHHHHHHhhhc
Confidence 67899888776544432 1 01445567887765
No 473
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=42.75 E-value=17 Score=24.72 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc-CcHHH------HHHHHhcccCCeEEE
Q 032355 12 YEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NYCNY------HERLMKLLKVGGIAV 82 (142)
Q Consensus 12 ~~~a~~~~~~~~~~-~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~-~~~~~------~~~~~~~L~~gG~iv 82 (142)
.+..++.++++|+. ..+.+...+..+....+ ...|+||+-+... .+... .+.+.+.++.|++++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i-------~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~ 73 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAI-------READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVII 73 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHH-------HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHH-------HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEE
Confidence 45678888898874 11222222233454444 3699999977422 22222 234445677787775
No 474
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=42.53 E-value=1.2e+02 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=21.1
Q ss_pred HHHHHHHHhcccCCeEEEEecccccccccCC
Q 032355 65 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 95 (142)
Q Consensus 65 ~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~ 95 (142)
...++.+...|+.||++++-.-...|...++
T Consensus 13 ~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~ 43 (211)
T COG0009 13 PRAIEKAVEALRKGGVVAYPTDTVYGLGADA 43 (211)
T ss_pred hHHHHHHHHHHHcCCEEEEEccchheeecCC
Confidence 4567777888888999988544444655554
No 475
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.30 E-value=63 Score=21.60 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=44.5
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCe
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 79 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~--~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG 79 (142)
|...-..+.+...++..|+. |.-.- .+..+++.... +...|+|.+-+....|.+.++.+.+.|+..|
T Consensus 13 D~Hd~g~~iv~~~l~~~Gfe--Vi~lg~~~s~e~~v~aa~-----e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFD--VDVGPLFQTPEEIARQAV-----EADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhCCcE--EEECCCCCCHHHHHHHHH-----HcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 44555667778888888874 22221 23456666554 4689999998776667888888887776644
No 476
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=41.82 E-value=1.5e+02 Score=22.28 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=40.8
Q ss_pred CEEEEeCChhHHHHHHHHHHHc--CCC-----------------CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCC
Q 032355 1 MITAIDVNRETYEIGLPIIKKA--GVD-----------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~--~~~-----------------~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~ 61 (142)
+|+.+|.+++.++.+++.+++. ++. .++... .+. + .+ ...|+|+.-.+.
T Consensus 28 ~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~---~~-------~~aDlVieav~e 95 (291)
T PRK06035 28 DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E---SL-------SDADFIVEAVPE 95 (291)
T ss_pred eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H---Hh-------CCCCEEEEcCcC
Confidence 4789999999998877655431 110 111111 111 1 11 357999876543
Q ss_pred cC--cHHHHHHHHhcccCCeEEE
Q 032355 62 DN--YCNYHERLMKLLKVGGIAV 82 (142)
Q Consensus 62 ~~--~~~~~~~~~~~L~~gG~iv 82 (142)
.. -..+++.+.+.++++.+++
T Consensus 96 ~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 96 KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred cHHHHHHHHHHHHhhCCCCeEEE
Confidence 21 3566777777888887765
No 477
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=41.80 E-value=1.6e+02 Score=22.73 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=38.9
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
+++++.+++..+.+++ .|...-+.....+..+.+..+. +..+|+|+ |..- -...+..+.+.++++|.+
T Consensus 214 v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~~~d~vl-d~~g--~~~~~~~~~~~l~~~G~~ 281 (365)
T cd08278 214 IIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GGGVDYAL-DTTG--VPAVIEQAVDALAPRGTL 281 (365)
T ss_pred EEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CCCCcEEE-ECCC--CcHHHHHHHHHhccCCEE
Confidence 6777777777766653 3432111111122333333331 34699887 4321 123567788889999988
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 282 v~ 283 (365)
T cd08278 282 AL 283 (365)
T ss_pred EE
Confidence 75
No 478
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.69 E-value=1.5e+02 Score=22.40 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=18.3
Q ss_pred CceeEEEEcCCCcCc--HHHHHHHH---hcccCCeEE
Q 032355 50 GSFDYAFVDADKDNY--CNYHERLM---KLLKVGGIA 81 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~--~~~~~~~~---~~L~~gG~i 81 (142)
..+|+|++|.+-..+ ...++.+. +...|.-++
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~ 189 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIC 189 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEE
Confidence 479999999864432 33444443 344554333
No 479
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=41.68 E-value=1.4e+02 Score=21.88 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=10.1
Q ss_pred CceeEEEEcCCC
Q 032355 50 GSFDYAFVDADK 61 (142)
Q Consensus 50 ~~fD~IfiD~~~ 61 (142)
+.||+|++|.+.
T Consensus 82 ~~yD~iiID~pp 93 (231)
T PRK13849 82 QGFDYALADTHG 93 (231)
T ss_pred CCCCEEEEeCCC
Confidence 579999999864
No 480
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=41.67 E-value=96 Score=23.84 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=33.1
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCC
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
|+....++.|.+.+++.+-.-+++.+.++..+.-..+ -.+||+|+.-.+
T Consensus 49 dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~~~~f------~~~fdvVi~alD 97 (291)
T cd01488 49 DIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEF------YRQFNIIICGLD 97 (291)
T ss_pred HcchHHHHHHHHHHHHHCCCCEEEEEecccCchhHHH------hcCCCEEEECCC
Confidence 3445677888888888765556777777776543343 257999986444
No 481
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.16 E-value=19 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.3
Q ss_pred cCcHHHHHHHHhcccCCeEEEE
Q 032355 62 DNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 62 ~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
......++.+..+|+|||.+++
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~V 242 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAV 242 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEE
Confidence 3456778888899999999987
No 482
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=41.08 E-value=59 Score=22.88 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=10.7
Q ss_pred CCceeEEEEcCCC
Q 032355 49 EGSFDYAFVDADK 61 (142)
Q Consensus 49 ~~~fD~IfiD~~~ 61 (142)
...||+|++|.+.
T Consensus 125 ~~~yD~ViiD~pp 137 (204)
T TIGR01007 125 RKYFDYIIIDTPP 137 (204)
T ss_pred HhcCCEEEEeCCC
Confidence 3579999999874
No 483
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=40.98 E-value=1.4e+02 Score=21.87 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHH-----HHHHHhcccCCeEEEEec
Q 032355 11 TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY-----HERLMKLLKVGGIAVYDN 85 (142)
Q Consensus 11 ~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~-----~~~~~~~L~~gG~iv~dn 85 (142)
+++.--+.++..|.. .|.++.|=..+...-+ ..+||+=+++-++ |..| |-.+...|+.-=++-.||
T Consensus 33 lIErqI~~L~e~gI~-dI~IVvGYlkE~FeYL------kdKy~vtLvyN~k--Y~~yNn~ySlyla~d~l~ntYiidsDn 103 (231)
T COG4750 33 LIERQIEQLREAGID-DITIVVGYLKEQFEYL------KDKYDVTLVYNPK--YREYNNIYSLYLARDFLNNTYIIDSDN 103 (231)
T ss_pred cHHHHHHHHHHCCCc-eEEEEeeehHHHHHHH------HHhcCeEEEeCch--HHhhhhHHHHHHHHHHhcccEEeccch
Confidence 566666778888986 5999999887777766 3578999888764 4433 345567787555555566
Q ss_pred cccc
Q 032355 86 TLWG 89 (142)
Q Consensus 86 ~~~~ 89 (142)
.+..
T Consensus 104 yl~k 107 (231)
T COG4750 104 YLTK 107 (231)
T ss_pred Hhhh
Confidence 6653
No 484
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=40.28 E-value=1.9e+02 Score=23.11 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=38.1
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..+|-++......+..+...|. .+. ...++.+.+..+. ...+|+|++|...+
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlillD~~~p 59 (457)
T PRK11361 6 RILIVDDEDNVRRMLSTAFALQGF--ETH-CANNGRTALHLFA-----DIHPDVVLMDIRMP 59 (457)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCC
Confidence 366788899888888888888765 233 3456666665553 45799999997543
No 485
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.03 E-value=1.6e+02 Score=22.22 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=40.4
Q ss_pred CEEEEeCChhHHHHHHHHHHHc-CC--C--------CcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHH
Q 032355 1 MITAIDVNRETYEIGLPIIKKA-GV--D--------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY 67 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~-~~--~--------~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~ 67 (142)
+|+.+|.+++.++.+++.+.+. +. . .++++ ..+..+. -...|+|++-.+... ...+
T Consensus 29 ~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----------~~~aDlVi~av~~~~~~~~~v 97 (311)
T PRK06130 29 QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----------VSGADLVIEAVPEKLELKRDV 97 (311)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----------hccCCEEEEeccCcHHHHHHH
Confidence 4788999999988887754321 11 0 11222 1222221 135799998654321 3456
Q ss_pred HHHHHhcccCCeEEEE
Q 032355 68 HERLMKLLKVGGIAVY 83 (142)
Q Consensus 68 ~~~~~~~L~~gG~iv~ 83 (142)
+..+.+.++++.+|+.
T Consensus 98 ~~~l~~~~~~~~ii~s 113 (311)
T PRK06130 98 FARLDGLCDPDTIFAT 113 (311)
T ss_pred HHHHHHhCCCCcEEEE
Confidence 7777677766665543
No 486
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=39.82 E-value=1.3e+02 Score=21.09 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCC
Q 032355 11 TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78 (142)
Q Consensus 11 ~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~g 78 (142)
.++...+.++...-...+-++..++.+++.-- .-+.||+ +..+.....+++.+.+.+.++
T Consensus 71 ~v~~l~~~L~~~r~~~~a~i~~~sapelm~lT-----rlG~f~m---~~~~~g~~~~lKkl~~~~~~~ 130 (164)
T PF11965_consen 71 HVRPLLPALEARRDHCPAMIIFESAPELMRLT-----RLGKFSM---GGEKSGPPALLKKLRGKLKKG 130 (164)
T ss_pred HHHHHHHHHHHHHccCCEEEEEcCHHHHHHHh-----cccceec---CCCCcchHHHHHHHHhhccCC
Confidence 33334444443322223555555555655422 1356666 555566777777777766655
No 487
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=39.74 E-value=77 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=35.3
Q ss_pred EEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEE
Q 032355 31 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 83 (142)
Q Consensus 31 ~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~ 83 (142)
+-+-+.+.+....+ .+.||.|++|-..+....+++.|..++++--.||+
T Consensus 279 F~~aC~eli~~~~~----~~~yD~ilIDE~QDFP~~F~~Lcf~~tkd~Krlvy 327 (660)
T COG3972 279 FDAACKELIADINN----KKAYDYILIDESQDFPQSFIDLCFMVTKDKKRLVY 327 (660)
T ss_pred hHHHHHHHHHhhhc----cccccEEEecccccCCHHHHHHHHHHhcCcceEEE
Confidence 33444566665532 46799999999888888999999998885555543
No 488
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=39.46 E-value=26 Score=23.33 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=10.7
Q ss_pred CceeEEEEcCCCc
Q 032355 50 GSFDYAFVDADKD 62 (142)
Q Consensus 50 ~~fD~IfiD~~~~ 62 (142)
..||+|++|.+..
T Consensus 116 ~~yd~IivD~~~~ 128 (157)
T PF13614_consen 116 EHYDYIIVDLPSS 128 (157)
T ss_dssp HHSSEEEEEEEST
T ss_pred HcCCEEEEECcCC
Confidence 4899999998754
No 489
>PRK15115 response regulator GlrR; Provisional
Probab=39.39 E-value=2e+02 Score=22.95 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCc
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 62 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~ 62 (142)
+|..+|-++.........++..|. .+. ...++.+.+..+. ...+|+|++|...+
T Consensus 7 ~vLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~eal~~l~-----~~~~dlvilD~~lp 60 (444)
T PRK15115 7 HLLLVDDDPGLLKLLGMRLTSEGY--SVV-TAESGQEALRVLN-----REKVDLVISDLRMD 60 (444)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cCCCCEEEEcCCCC
Confidence 467899999999999999988765 233 4455666655542 45799999997544
No 490
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=39.35 E-value=2e+02 Score=23.02 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=41.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCc--HHHHHHHHh
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK 73 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~--~~~~~~~~~ 73 (142)
|..+|-++...+.....++..|.. +. ...++.+.+..+. ...||+|++|...+.. ...++.+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~~~-----~~~~DlVllD~~~p~~~g~~ll~~l~~ 66 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYE--VR-TFGNAASVLRALA-----RGQPDLLITDVRMPGEDGLDLLPQIKK 66 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCE--EE-EECCHHHHHHHHh-----cCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 356788888888888888877652 33 3456666665552 4579999999754432 334444443
No 491
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=39.25 E-value=1.2e+02 Score=20.65 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=39.8
Q ss_pred EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHH
Q 032355 3 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 72 (142)
Q Consensus 3 ~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~ 72 (142)
..+|-++......+..+...|. .+ ....++.+.+..+. ...+|+|++|...+. ..+.++.+.
T Consensus 2 liidd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~~~~~~~-----~~~~dlvl~d~~~~~~~g~~~~~~l~ 65 (218)
T TIGR01387 2 LVVEDEQKTAEYLQQGLSESGY--VV-DAASNGRDGLHLAL-----KDDYDLIILDVMLPGMDGWQILQTLR 65 (218)
T ss_pred EEEECCHHHHHHHHHHHHHCCC--EE-EEECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5678888888888888877654 22 34456666655542 467999999975432 234444444
No 492
>PRK09483 response regulator; Provisional
Probab=39.09 E-value=1.3e+02 Score=20.71 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=40.6
Q ss_pred CEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcC--cHHHHHHHHh
Q 032355 1 MITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 73 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~--~~~~~~~~~~ 73 (142)
+|.-+|-++......+..++..+. -.+.....++.+.+..+. ..++|+|++|...+. -...++.+.+
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~-----~~~~dlvi~d~~~~~~~g~~~~~~l~~ 71 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKG-IKVVGEACCGEDAVKWCR-----TNAVDVVLMDMNMPGIGGLEATRKILR 71 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCC-CEEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 356788888888888888865321 123224456666655553 457999999975432 2344554443
No 493
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=39.04 E-value=60 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEecc
Q 032355 50 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 86 (142)
Q Consensus 50 ~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~ 86 (142)
...|+++. - .+.-+....+.|++||+++++.-
T Consensus 67 ~~~D~lva-l----~~~~~~~~~~~l~~gg~ii~n~~ 98 (183)
T PRK08441 67 GEIDFMLS-T----AQISYNQFKSGVKEGGIIVVEPN 98 (183)
T ss_pred CCCCEEEE-C----CHHHHHHHHhhcCCCeEEEEcCC
Confidence 46788873 1 12234555678999999999853
No 494
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=38.58 E-value=1.6e+02 Score=22.31 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=37.7
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcccCCCceeEEEEcCCCcCcHHHHHHHHhcccCCeEE
Q 032355 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 81 (142)
Q Consensus 2 v~~ve~~~~~~~~a~~~~~~~~~~~~v~~~~~da~~~l~~~~~~~~~~~~fD~IfiD~~~~~~~~~~~~~~~~L~~gG~i 81 (142)
|+.++.+++..+.+++ .|...-+.....+..+.+..+ ..+|+++ |.. .....++.+.+.|+++|.+
T Consensus 190 vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------~~~d~vi-~~~--g~~~~~~~~~~~l~~~G~~ 255 (333)
T cd08296 190 TVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------GGAKLIL-ATA--PNAKAISALVGGLAPRGKL 255 (333)
T ss_pred EEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------CCCCEEE-ECC--CchHHHHHHHHHcccCCEE
Confidence 5667777776666643 343221222222222323222 3589888 432 1244677788899999998
Q ss_pred EE
Q 032355 82 VY 83 (142)
Q Consensus 82 v~ 83 (142)
+.
T Consensus 256 v~ 257 (333)
T cd08296 256 LI 257 (333)
T ss_pred EE
Confidence 75
No 495
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=38.54 E-value=38 Score=22.52 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=15.4
Q ss_pred CEEEEeCChhHHHHHHHH--HHHc
Q 032355 1 MITAIDVNRETYEIGLPI--IKKA 22 (142)
Q Consensus 1 ~v~~ve~~~~~~~~a~~~--~~~~ 22 (142)
+|+++|.+|..++..+++ +...
T Consensus 25 ~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 25 RVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EEEEE---HHHHHHHHHH--HHHT
T ss_pred EEEEEECCHHHHHHHhHHHHHHhc
Confidence 378999999999999999 5544
No 496
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=38.47 E-value=1.6e+02 Score=24.68 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCcE-EEEEcc------HHHHHHHHhhcccCCCceeEEEEcCCCcCc-HHHHHHHHhccc--CCeEE
Q 032355 12 YEIGLPIIKKAGVDHKI-NFIESE------ALSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKLLK--VGGIA 81 (142)
Q Consensus 12 ~~~a~~~~~~~~~~~~v-~~~~~d------a~~~l~~~~~~~~~~~~fD~IfiD~~~~~~-~~~~~~~~~~L~--~gG~i 81 (142)
++.||..+..+|+.+.. ++...| +.-.+..+. -+..|++++|-+..+. .+-++++...++ .||+|
T Consensus 681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa-----l~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi 755 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA-----LGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVI 755 (807)
T ss_pred hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh-----cCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEE
Confidence 45688888888886442 333222 233444443 3568999999876542 222333333332 68888
Q ss_pred EEe
Q 032355 82 VYD 84 (142)
Q Consensus 82 v~d 84 (142)
++.
T Consensus 756 ~Vs 758 (807)
T KOG0066|consen 756 MVS 758 (807)
T ss_pred EEe
Confidence 763
No 497
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=38.45 E-value=1.5e+02 Score=23.44 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=38.5
Q ss_pred eeEEEEcCCCcCcHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCCCcchHHHHHHHHHHhhcCCCe
Q 032355 52 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV 124 (142)
Q Consensus 52 fD~IfiD~~~~~~~~~~~~~~~~L~~gG~iv~dn~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (142)
-|++|+|--. -.-.+.+..-..||++|+.+|+.++-.-..........-.. ....+.+|...+..-.++
T Consensus 90 ~~v~flddCv---g~eVe~a~~~p~~G~viLLENlRfy~eEEg~~~~~~~~~~a-~~~~v~~fr~~l~~l~Dv 158 (416)
T KOG1367|consen 90 KEVVFLDDCV---GPEVEKAVASPAPGSVILLENLRFYVEEEGKGKDDSGKKVA-DPAKVKEFRASLASLGDV 158 (416)
T ss_pred cceeeecccc---cHHHHHHhcCCCCCcEEEeecceeehhhhcCCccccccccC-CHHHHHHHHHHHHhhccE
Confidence 5667776321 12244555677899999999999854321111101000011 344688888887765554
No 498
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.41 E-value=2.2e+02 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=18.4
Q ss_pred ceeEEEEcCCCcCc--HHHHHHHHhc---ccCCeEEEE
Q 032355 51 SFDYAFVDADKDNY--CNYHERLMKL---LKVGGIAVY 83 (142)
Q Consensus 51 ~fD~IfiD~~~~~~--~~~~~~~~~~---L~~gG~iv~ 83 (142)
.||+||+|.+-..+ ...++.+.+. ..|.-++++
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 59999999864332 3334444443 345544433
No 499
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=38.08 E-value=1.4e+02 Score=22.13 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccHH---HHHHHHhhcccCCCceeEEEEcCC
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da~---~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
|+-...++.|++++++.+-.-+++.+.+... ++-..+ -.+||+|+.-.+
T Consensus 49 dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f------~~~~DvVi~a~D 100 (234)
T cd01484 49 DIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTF------FEQFHIIVNALD 100 (234)
T ss_pred hCChHHHHHHHHHHHHHCCCCEEEEEeccCChhhhchHHH------HhCCCEEEECCC
Confidence 4455677888888888765556777777662 222222 257999996444
No 500
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=37.67 E-value=1.2e+02 Score=19.88 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=33.7
Q ss_pred eCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcccCCCceeEEEEcCC
Q 032355 6 DVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDAD 60 (142)
Q Consensus 6 e~~~~~~~~a~~~~~~~~~~~~v~~~~~da-~~~l~~~~~~~~~~~~fD~IfiD~~ 60 (142)
|+.....+.+++.+++.+-.-+++.+..+. .+....+. ..+|+|+.-.+
T Consensus 52 ~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~------~~~d~vi~~~d 101 (135)
T PF00899_consen 52 DVGKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELL------KDYDIVIDCVD 101 (135)
T ss_dssp GTTSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHH------HTSSEEEEESS
T ss_pred cchhHHHHHHHHHHHHhcCceeeeeeecccccccccccc------cCCCEEEEecC
Confidence 345567888999998876555788888777 34444442 47999986544
Done!