BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032356
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
 pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
           Kinaseinteracting Domains In A Single Type Iii Effector
          Length = 349

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query: 6   LFDYALVLKEQGNLMELVDPHLGLNFVEEQAMVMINVALLCADVSHTNRPLMSSVVSMLE 65
           L D+   L ++  L  LVD  L  N+ +E+   +I VALLC   S   RP MS VV MLE
Sbjct: 256 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315

Query: 66  G 66
           G
Sbjct: 316 G 316


>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
           Plant Receptor- Like Kinase Bak1 Activation
 pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
          Length = 326

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query: 6   LFDYALVLKEQGNLMELVDPHLGLNFVEEQAMVMINVALLCADVSHTNRPLMSSVVSMLE 65
           L D+   L ++  L  LVD  L  N+ +E+   +I VALLC   S   RP MS VV MLE
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307

Query: 66  G 66
           G
Sbjct: 308 G 308


>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
           Bacterial Effector Protein Avrpto
          Length = 321

 Score = 30.4 bits (67), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 3   LLPLFDYALVLKEQGNLMELVDPHLGLNFVEEQAMVMINVALLCADVSHTNRPLMSSVVS 62
           ++ L ++A+     G L ++VDP+L      E      + A+ C  +S  +RP M  V+ 
Sbjct: 249 MVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLW 308

Query: 63  MLE 65
            LE
Sbjct: 309 KLE 311


>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
 pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
           Kinase Pto
          Length = 327

 Score = 30.0 bits (66), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 3   LLPLFDYALVLKEQGNLMELVDPHLGLNFVEEQAMVMINVALLCADVSHTNRPLMSSVVS 62
           ++ L ++A+     G L ++VDP+L      E      + A+ C  +S  +RP M  V+ 
Sbjct: 249 MVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLW 308

Query: 63  MLE 65
            LE
Sbjct: 309 KLE 311


>pdb|1HSK|A Chain A, Crystal Structure Of S. Aureus Murb
          Length = 326

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 7   FDYALVLKEQGNLMELVDPHLGLNF----VEEQAMVMINVALLCA 47
            DYAL + EQG+L++L    L L++    ++++ +V++  A   A
Sbjct: 163 IDYALCVNEQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLA 207


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,614
Number of Sequences: 62578
Number of extensions: 120453
Number of successful extensions: 354
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)