BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032360
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd
pdb|1SYX|A Chain A, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|C Chain C, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|E Chain E, The Crystal Structure Of A Binary U5 Snrnp Complex
Length = 142
Score = 267 bits (683), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 120/142 (84%), Positives = 135/142 (95%)
Query: 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60
MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
Query: 61 VDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
VDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVY
Sbjct: 61 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120
Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142
>pdb|2AV4|A Chain A, Crystal Structure Of Plasmodium Yoelii Thioredoxin-like
Protein 4a (dim1)
Length = 160
Score = 243 bits (620), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 110/141 (78%), Positives = 129/141 (91%)
Query: 2 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLV 61
S++L HL+SGWAVDQAI+ E+ERLV IRFGHD+D CM+MDE+L VA+ IKNF VIYLV
Sbjct: 20 SFMLQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLV 79
Query: 62 DISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121
DI+EVPDFNTMYELYDP +VMFF+RNKH+MIDLGTGNNNKINW + +KQEFIDIVET++R
Sbjct: 80 DITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR 139
Query: 122 GARKGRGLVIAPKDYSTKYRY 142
GARKGRGLVI+PKDYSTKY+Y
Sbjct: 140 GARKGRGLVISPKDYSTKYKY 160
>pdb|1PQN|A Chain A, Dominant Negative Human Hdim1 (Hdim1 1-128)
Length = 127
Score = 238 bits (607), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 120/127 (94%)
Query: 2 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLV 61
SY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLV
Sbjct: 1 SYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 60
Query: 62 DISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121
DI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVYR
Sbjct: 61 DITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR 120
Query: 122 GARKGRG 128
GARKGRG
Sbjct: 121 GARKGRG 127
>pdb|1XBS|A Chain A, Crystal Structure Of Human Dim2: A Dim1-Like Protein
Length = 149
Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Query: 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60
MS+LLP L S VDQAI + E+++V+RFG D D C+Q+D++LS + + A IYL
Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60
Query: 61 VDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119
VD+ + + +++ Y PSTV FFF +H+ +D G+ ++ K + K KQ+FID++E +
Sbjct: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119
Query: 120 YRGARKGRGLVIAPKD 135
YRGA +G+ +V +P D
Sbjct: 120 YRGAMRGKLIVQSPID 135
>pdb|3GIX|A Chain A, Crystal Structure Of Human Splicing Factor Dim2
pdb|3GIX|B Chain B, Crystal Structure Of Human Splicing Factor Dim2
Length = 149
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Query: 2 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLV 61
S+LLP L S VDQAI + E+++V+RFG D D C+Q+D++LS + + A IYLV
Sbjct: 2 SFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLV 61
Query: 62 DISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120
D+ + + +++ Y PSTV FFF +H+ +D G+ ++ K + K KQ+FID++E +Y
Sbjct: 62 DVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120
Query: 121 RGARKGRGLVIAPKD 135
RGA +G+ +V +P D
Sbjct: 121 RGAMRGKLIVQSPID 135
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 25 LVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84
L+V+ F W C QM+EV++ +A+ + + + L + VP+ + YE+ T +FF
Sbjct: 40 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL-EAEGVPEVSEKYEISSVPTFLFF 98
Query: 85 FRNKHI 90
++ I
Sbjct: 99 KNSQKI 104
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human
Txnl2
Length = 153
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 25 LVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84
L+V+ F W C QM+EV++ +A+ + + + L + VP+ + YE+ T +FF
Sbjct: 34 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKL-EAEGVPEVSEKYEISSVPTFLFF 92
Query: 85 FRNKHI 90
++ I
Sbjct: 93 KNSQKI 98
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80
E E V++ F W C + V+ +A+ +Y ++ E P T Y + T
Sbjct: 15 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 74
Query: 81 VMFF 84
V+FF
Sbjct: 75 VLFF 78
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80
E E V++ F W C + V+ +A+ +Y ++ E P T Y + T
Sbjct: 16 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 81 VMFF 84
V+FF
Sbjct: 76 VLFF 79
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 20 AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPS 79
+ + ++V+ F W C Q+ ++E + + ++D+ E+ DF+ +E+ +
Sbjct: 43 SRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSL-MFLVIDVDELSDFSASWEIK--A 99
Query: 80 TVMFFFRNKHIMIDLGTGNN 99
T FFF +D G N
Sbjct: 100 TPTFFFLRDGQQVDKLVGAN 119
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 20 AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL-VDISEVPDFNTMYELYDP 78
A ++L+V+ F W E C + +V +++ N V +L +D E + + ++E+
Sbjct: 18 AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEI--- 74
Query: 79 STVMFFFRNKHIMIDLGT 96
S V +F I+I GT
Sbjct: 75 SAVPYF-----IIIHKGT 87
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 6 PHLHSGWAV---DQAILAEEERLVVIRFGHDWDETCMQ 40
PHLH G +V ++A+ AE+E + FGH ++ C +
Sbjct: 109 PHLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKK 146
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82
++LVVI F W C M V + +A+ N AV VD+ E+ + + T +
Sbjct: 34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFL 92
Query: 83 F 83
F
Sbjct: 93 F 93
>pdb|1ECR|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna
pdb|2EWJ|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna- Locked Form
pdb|2I05|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Tera Dna
pdb|2I06|A Chain A, Escherichia Coli Replication Terminator Protein (tus)
Complexed With Dna- Locked Form
Length = 309
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 69 FNTMYELYDPSTVMFFFRNKHIMIDL 94
+ T+ L+DP+T+ F + NKHI+ +L
Sbjct: 156 YRTLTVLHDPATLRFGWANKHIIKNL 181
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-- 65
L + +++Q + + +VI+FG W + C ++ E + N+ + LVDI
Sbjct: 25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQL----NYYYVTLVDIDVDI 80
Query: 66 VPDFNTMYELYDPSTVMFFF--RNKHIMIDLGTGNN 99
P N + + T F+F N+ +++ G N
Sbjct: 81 HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGAN 116
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80
E E V++ F W + V+ +A+ +Y ++ E P T Y + T
Sbjct: 16 ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 81 VMFF 84
V+FF
Sbjct: 76 VLFF 79
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTV 81
E + ++ F W TC + VL +A + A I +D+ E P YE+ T+
Sbjct: 19 ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTL 78
Query: 82 MFF 84
+ F
Sbjct: 79 IVF 81
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83
+LVV+ F W C + L ++ + V+ VD+ E D Y + T F
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT--F 83
Query: 84 FFRNKHIMIDLGTGNNNK 101
F + ++ G N K
Sbjct: 84 VFLKNGVKVEEFAGANAK 101
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83
++VV+ F +W C+ + V+ +A A L + E D Y + T+MF
Sbjct: 24 KIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKL-NTEESQDIAMRYGIMSLPTIMF 82
Query: 84 FFRNKHIMIDLGTGNNNKINWALK 107
F + + LG +I LK
Sbjct: 83 FKNGELVDQILGAVPREEIEVRLK 106
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83
+LVV+ F W C + L ++ + V+ VD+ E D Y + T F
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT--F 78
Query: 84 FFRNKHIMIDLGTGNNNK 101
F + ++ G N K
Sbjct: 79 VFLKNGVKVEEFAGANAK 96
>pdb|3DPT|A Chain A, Cor Domain Of Rab Family Protein (Roco)
pdb|3DPT|B Chain B, Cor Domain Of Rab Family Protein (Roco)
Length = 332
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 79 STVMFFFRNKHIMID-LGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYS 137
S + + + I D NNK + L +++ +DI++ +G+GL I P +
Sbjct: 108 SALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLP 167
Query: 138 TK 139
T+
Sbjct: 168 TQ 169
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 20 AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLV-DISEVPDFNTMYELYD 77
+ + ++V+ F W C ++ E +N+ ++++LV D+ E+ DF+ +E+
Sbjct: 43 SRDGKIVLANFSARW---CGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIK- 98
Query: 78 PSTVMFFFRNKHIMIDLGTGNN 99
+T FFF +D G N
Sbjct: 99 -ATPTFFFLRDGQQVDKLVGAN 119
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 79 STVMFFFRNKHIMID-LGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYS 137
S + + + I D NNK + L +++ +DI++ +G+GL I P +
Sbjct: 311 SALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLP 370
Query: 138 TK 139
T+
Sbjct: 371 TQ 372
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQ 40
M+ PH W A+L+E RLV++ H+ T Q
Sbjct: 142 MALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQ 181
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80
E ++ ++ F DW C + +L +A+ VIY VD + + + + +
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 81 VMF 83
++F
Sbjct: 96 ILF 98
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 VVIRFGHDWDETCMQMDEVLSSVAETIKN 54
VIR+ D D+ DE+L++ A IKN
Sbjct: 143 TVIRYRQDDDQRSSHYDELLAAEARAIKN 171
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 307 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 366
Query: 115 IVE 117
I++
Sbjct: 367 ILQ 369
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 310 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 369
Query: 115 IVE 117
I++
Sbjct: 370 ILQ 372
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 314 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 373
Query: 115 IVE 117
I++
Sbjct: 374 ILQ 376
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 314 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 373
Query: 115 IVE 117
I++
Sbjct: 374 ILQ 376
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 314 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 373
Query: 115 IVE 117
I++
Sbjct: 374 ILQ 376
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFID 114
A+ Y +DI+ P N +YEL ++ + H M G G ++W ++ ++ +
Sbjct: 314 ALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILA 373
Query: 115 IVE 117
I++
Sbjct: 374 ILQ 376
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,497,431
Number of Sequences: 62578
Number of extensions: 177151
Number of successful extensions: 419
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 35
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)