Query 032360
Match_columns 142
No_of_seqs 185 out of 1483
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00410 U5 snRNP protein, DIM 100.0 1.2E-39 2.5E-44 226.1 16.0 141 1-142 1-142 (142)
2 KOG3414 Component of the U4/U6 100.0 4.4E-34 9.5E-39 190.7 14.6 142 1-142 1-142 (142)
3 cd02986 DLP Dim1 family, Dim1- 100.0 6.6E-32 1.4E-36 180.2 13.6 113 11-123 2-114 (114)
4 cd02954 DIM1 Dim1 family; Dim1 100.0 8.3E-31 1.8E-35 175.7 14.2 113 10-122 1-113 (114)
5 PF02966 DIM1: Mitosis protein 100.0 3.4E-28 7.4E-33 164.3 16.0 133 4-136 1-133 (133)
6 KOG0910 Thioredoxin-like prote 99.9 6.4E-27 1.4E-31 162.0 11.8 104 7-121 46-149 (150)
7 cd02985 TRX_CDSP32 TRX family, 99.9 7.2E-25 1.6E-29 144.9 13.5 98 9-118 1-101 (103)
8 PHA02278 thioredoxin-like prot 99.9 9.1E-25 2E-29 144.6 12.5 87 9-97 2-92 (103)
9 KOG0907 Thioredoxin [Posttrans 99.9 4.8E-25 1E-29 146.5 11.0 95 13-119 11-105 (106)
10 cd02948 TRX_NDPK TRX domain, T 99.9 1.8E-23 3.9E-28 137.9 12.7 98 7-118 3-101 (102)
11 cd02956 ybbN ybbN protein fami 99.9 1.9E-23 4.1E-28 135.7 11.3 95 13-117 2-96 (96)
12 KOG0908 Thioredoxin-like prote 99.9 1.2E-23 2.6E-28 155.6 10.2 122 5-138 3-127 (288)
13 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.5E-23 1.6E-27 137.5 11.6 87 11-97 16-104 (113)
14 PF00085 Thioredoxin: Thioredo 99.9 2.1E-22 4.6E-27 131.4 13.4 99 10-119 5-103 (103)
15 cd03065 PDI_b_Calsequestrin_N 99.9 8.6E-23 1.9E-27 138.4 11.5 101 7-120 13-119 (120)
16 cd02999 PDI_a_ERp44_like PDIa 99.9 7.9E-23 1.7E-27 134.6 10.8 91 13-115 8-99 (100)
17 PRK09381 trxA thioredoxin; Pro 99.9 4E-22 8.7E-27 132.4 13.5 108 1-120 1-108 (109)
18 cd02963 TRX_DnaJ TRX domain, D 99.9 1.6E-22 3.4E-27 135.4 11.5 100 9-118 9-110 (111)
19 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.9E-22 6.3E-27 132.0 11.1 85 10-96 7-92 (104)
20 cd02962 TMX2 TMX2 family; comp 99.9 6.4E-22 1.4E-26 139.3 13.2 105 11-115 35-147 (152)
21 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.1E-22 6.7E-27 131.4 10.7 81 10-92 7-87 (101)
22 PRK10996 thioredoxin 2; Provis 99.9 1.4E-21 3E-26 135.8 13.5 98 10-119 41-138 (139)
23 cd02984 TRX_PICOT TRX domain, 99.9 1.3E-21 2.8E-26 127.1 12.3 96 10-116 1-96 (97)
24 COG3118 Thioredoxin domain-con 99.9 4.8E-22 1E-26 150.8 11.0 107 5-122 25-132 (304)
25 cd02950 TxlA TRX-like protein 99.9 1.7E-21 3.8E-26 135.8 12.8 101 11-123 10-113 (142)
26 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.2E-21 4.7E-26 130.4 12.6 89 5-96 6-94 (113)
27 cd02965 HyaE HyaE family; HyaE 99.9 2.4E-21 5.2E-26 129.3 10.3 85 11-97 17-103 (111)
28 cd02957 Phd_like Phosducin (Ph 99.9 3.5E-21 7.6E-26 129.1 10.1 89 5-96 6-95 (113)
29 cd02996 PDI_a_ERp44 PDIa famil 99.9 6.5E-21 1.4E-25 126.6 11.2 95 10-115 7-107 (108)
30 PTZ00443 Thioredoxin domain-co 99.9 1.3E-20 2.7E-25 140.2 13.7 106 10-125 36-144 (224)
31 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.4E-20 3E-25 123.1 11.3 93 10-115 6-101 (102)
32 PTZ00051 thioredoxin; Provisio 99.8 1.5E-20 3.3E-25 122.3 11.0 88 5-95 2-89 (98)
33 TIGR01068 thioredoxin thioredo 99.8 4.1E-20 8.8E-25 120.0 12.7 99 10-119 2-100 (101)
34 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.5E-20 3.4E-25 124.4 10.7 80 7-88 4-85 (109)
35 cd02949 TRX_NTR TRX domain, no 99.8 3.9E-20 8.4E-25 120.7 12.2 94 12-116 3-96 (97)
36 cd02994 PDI_a_TMX PDIa family, 99.8 2.6E-20 5.5E-25 122.1 11.1 96 6-117 4-100 (101)
37 cd02987 Phd_like_Phd Phosducin 99.8 7.2E-20 1.6E-24 131.7 12.9 108 5-117 64-172 (175)
38 cd02953 DsbDgamma DsbD gamma f 99.8 2.6E-20 5.7E-25 122.8 9.4 94 12-117 2-104 (104)
39 cd02951 SoxW SoxW family; SoxW 99.8 1.1E-19 2.4E-24 123.5 12.6 103 11-125 3-124 (125)
40 cd02975 PfPDO_like_N Pyrococcu 99.8 7.2E-20 1.6E-24 123.0 11.3 89 22-121 21-111 (113)
41 TIGR01126 pdi_dom protein disu 99.8 6E-20 1.3E-24 119.7 10.5 98 10-119 2-101 (102)
42 cd03001 PDI_a_P5 PDIa family, 99.8 1.1E-19 2.5E-24 118.9 11.6 97 10-116 6-102 (103)
43 cd02997 PDI_a_PDIR PDIa family 99.8 1.2E-19 2.6E-24 118.9 11.3 97 6-115 3-103 (104)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 1.4E-19 3.1E-24 119.4 11.2 94 12-119 7-103 (104)
45 cd02993 PDI_a_APS_reductase PD 99.8 1.9E-19 4.1E-24 119.9 11.1 86 11-96 8-97 (109)
46 cd02952 TRP14_like Human TRX-r 99.8 2.8E-19 6.1E-24 121.0 10.1 86 6-91 4-104 (119)
47 TIGR01295 PedC_BrcD bacterioci 99.8 1.3E-18 2.7E-23 118.5 12.6 95 10-117 12-121 (122)
48 cd02998 PDI_a_ERp38 PDIa famil 99.8 5.1E-19 1.1E-23 115.8 9.3 95 11-115 7-104 (105)
49 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 8.9E-19 1.9E-23 114.6 10.2 76 11-88 7-84 (104)
50 TIGR00424 APS_reduc 5'-adenyly 99.8 3.5E-18 7.6E-23 138.3 12.7 104 7-119 355-462 (463)
51 cd02961 PDI_a_family Protein D 99.8 4.5E-18 9.8E-23 109.7 10.0 76 11-88 5-82 (101)
52 cd02988 Phd_like_VIAF Phosduci 99.8 6.2E-18 1.3E-22 123.3 11.7 104 6-117 85-189 (192)
53 PTZ00062 glutaredoxin; Provisi 99.8 8.2E-18 1.8E-22 123.4 11.7 92 8-120 3-94 (204)
54 cd02992 PDI_a_QSOX PDIa family 99.8 1.2E-17 2.6E-22 112.3 11.4 79 10-89 7-90 (114)
55 PLN02309 5'-adenylylsulfate re 99.8 1.2E-17 2.6E-22 135.1 12.7 102 10-119 351-456 (457)
56 cd02947 TRX_family TRX family; 99.7 2.7E-17 5.8E-22 104.1 10.9 91 13-116 2-92 (93)
57 cd02959 ERp19 Endoplasmic reti 99.7 8.5E-18 1.8E-22 113.6 8.2 93 21-120 17-113 (117)
58 PTZ00102 disulphide isomerase; 99.7 2.6E-17 5.5E-22 133.7 11.4 101 11-121 364-466 (477)
59 TIGR01130 ER_PDI_fam protein d 99.7 1.1E-16 2.3E-21 129.0 12.4 99 10-120 7-109 (462)
60 PTZ00102 disulphide isomerase; 99.7 1.7E-16 3.8E-21 128.8 12.7 98 11-121 39-139 (477)
61 cd02982 PDI_b'_family Protein 99.7 8.3E-17 1.8E-21 105.4 8.3 87 23-119 12-102 (103)
62 TIGR00411 redox_disulf_1 small 99.7 2.3E-16 4.9E-21 99.3 9.8 80 26-119 2-81 (82)
63 TIGR02187 GlrX_arch Glutaredox 99.7 3.6E-16 7.8E-21 115.7 12.3 91 23-123 19-114 (215)
64 KOG0190 Protein disulfide isom 99.7 1.1E-16 2.4E-21 129.6 8.0 97 11-119 32-131 (493)
65 PRK00293 dipZ thiol:disulfide 99.7 4E-16 8.7E-21 129.9 11.5 102 7-119 456-569 (571)
66 PRK15412 thiol:disulfide inter 99.7 1.1E-15 2.4E-20 110.7 12.3 90 22-124 67-180 (185)
67 TIGR02740 TraF-like TraF-like 99.7 1.1E-15 2.4E-20 116.8 12.7 94 16-121 159-265 (271)
68 TIGR02738 TrbB type-F conjugat 99.7 9.7E-16 2.1E-20 108.1 10.5 85 23-119 50-152 (153)
69 cd02955 SSP411 TRX domain, SSP 99.7 3.4E-15 7.3E-20 101.8 11.9 81 11-93 5-97 (124)
70 cd03008 TryX_like_RdCVF Trypar 99.7 1.4E-15 3E-20 106.4 10.1 71 21-91 23-126 (146)
71 KOG0190 Protein disulfide isom 99.6 3.3E-16 7.2E-21 126.8 7.1 97 11-119 373-472 (493)
72 TIGR01130 ER_PDI_fam protein d 99.6 1.4E-15 3.1E-20 122.4 10.4 103 11-125 353-459 (462)
73 PHA02125 thioredoxin-like prot 99.6 3.3E-15 7.1E-20 93.3 9.3 60 27-95 2-61 (75)
74 PRK14018 trifunctional thiored 99.6 4E-15 8.6E-20 122.1 12.0 86 22-117 55-170 (521)
75 cd03007 PDI_a_ERp29_N PDIa fam 99.6 2.2E-15 4.8E-20 101.4 8.7 94 11-118 8-114 (116)
76 PF13905 Thioredoxin_8: Thiore 99.6 5.6E-15 1.2E-19 95.5 9.6 68 23-90 1-95 (95)
77 cd02964 TryX_like_family Trypa 99.6 5.9E-15 1.3E-19 101.2 8.8 69 22-90 16-112 (132)
78 TIGR02187 GlrX_arch Glutaredox 99.6 1.3E-14 2.7E-19 107.4 10.9 88 17-118 127-214 (215)
79 cd03009 TryX_like_TryX_NRX Try 99.6 9.5E-15 2.1E-19 99.8 8.9 69 22-90 17-112 (131)
80 cd03010 TlpA_like_DsbE TlpA-li 99.6 1.7E-14 3.6E-19 98.0 10.0 92 2-97 5-121 (127)
81 PF13098 Thioredoxin_2: Thiore 99.6 6.1E-15 1.3E-19 98.0 7.2 86 21-116 3-112 (112)
82 TIGR00385 dsbE periplasmic pro 99.6 3.9E-14 8.4E-19 101.5 11.8 87 22-121 62-172 (173)
83 TIGR00412 redox_disulf_2 small 99.6 2.1E-14 4.5E-19 89.9 8.7 59 27-90 2-60 (76)
84 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 3.5E-14 7.6E-19 95.7 9.6 97 3-114 3-120 (123)
85 PRK03147 thiol-disulfide oxido 99.5 1.6E-13 3.4E-18 97.6 12.5 89 22-119 60-171 (173)
86 KOG0912 Thiol-disulfide isomer 99.5 2.6E-14 5.7E-19 109.0 8.2 113 12-135 4-135 (375)
87 PLN02919 haloacid dehalogenase 99.5 7.7E-14 1.7E-18 123.0 12.4 90 22-121 419-537 (1057)
88 PRK13728 conjugal transfer pro 99.5 1.3E-13 2.8E-18 99.4 11.1 84 27-122 73-173 (181)
89 KOG4277 Uncharacterized conser 99.5 2.8E-14 6.1E-19 109.0 6.5 85 12-97 31-119 (468)
90 cd02973 TRX_GRX_like Thioredox 99.5 1.2E-13 2.5E-18 84.0 6.3 60 27-89 3-62 (67)
91 cd02967 mauD Methylamine utili 99.5 3.6E-13 7.7E-18 89.6 8.7 40 22-61 20-59 (114)
92 cd02966 TlpA_like_family TlpA- 99.5 7.7E-13 1.7E-17 86.5 10.0 72 22-93 18-113 (116)
93 cd02960 AGR Anterior Gradient 99.4 3.2E-12 7E-17 87.6 11.7 100 13-117 11-117 (130)
94 cd02958 UAS UAS family; UAS is 99.4 4.6E-12 1E-16 84.8 12.3 91 21-121 15-112 (114)
95 TIGR02661 MauD methylamine deh 99.4 1.5E-12 3.3E-17 94.6 10.6 86 22-119 73-178 (189)
96 cd03012 TlpA_like_DipZ_like Tl 99.4 1.2E-12 2.6E-17 88.9 9.5 74 22-95 22-124 (126)
97 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1.9E-12 4.2E-17 83.4 9.3 70 19-91 8-77 (89)
98 PF08534 Redoxin: Redoxin; In 99.4 3E-12 6.5E-17 88.8 10.9 77 21-97 26-135 (146)
99 KOG0191 Thioredoxin/protein di 99.4 8.5E-13 1.9E-17 105.3 8.6 90 22-121 46-135 (383)
100 PTZ00056 glutathione peroxidas 99.4 2.4E-12 5.3E-17 94.4 10.0 42 22-63 38-80 (199)
101 TIGR01626 ytfJ_HI0045 conserve 99.4 3.9E-12 8.4E-17 92.1 9.9 83 22-114 58-174 (184)
102 COG4232 Thiol:disulfide interc 99.4 2.3E-12 5.1E-17 105.7 8.9 102 7-119 458-567 (569)
103 PF13899 Thioredoxin_7: Thiore 99.4 6.3E-12 1.4E-16 79.5 9.0 64 21-85 15-81 (82)
104 PLN02399 phospholipid hydroper 99.4 8.5E-12 1.8E-16 93.6 10.7 42 22-63 98-140 (236)
105 COG0526 TrxA Thiol-disulfide i 99.3 8.2E-12 1.8E-16 80.9 8.2 68 23-90 32-102 (127)
106 PLN02412 probable glutathione 99.3 1.9E-11 4.1E-16 87.3 10.7 42 22-63 28-70 (167)
107 cd02969 PRX_like1 Peroxiredoxi 99.3 7E-11 1.5E-15 84.2 12.0 103 22-125 24-157 (171)
108 PRK11509 hydrogenase-1 operon 99.3 5.6E-11 1.2E-15 81.6 10.9 100 12-123 25-127 (132)
109 KOG2501 Thioredoxin, nucleored 99.3 1.4E-11 3E-16 86.4 6.1 69 22-90 32-128 (157)
110 KOG0914 Thioredoxin-like prote 99.2 3.7E-11 8E-16 88.0 7.9 119 5-123 126-253 (265)
111 TIGR02540 gpx7 putative glutat 99.2 1.1E-10 2.3E-15 81.9 9.5 43 21-63 20-63 (153)
112 cd00340 GSH_Peroxidase Glutath 99.2 9.1E-11 2E-15 82.3 8.3 41 22-63 21-62 (152)
113 KOG1731 FAD-dependent sulfhydr 99.2 1.5E-11 3.2E-16 100.6 3.6 77 10-87 45-126 (606)
114 KOG0191 Thioredoxin/protein di 99.2 9.7E-11 2.1E-15 93.5 8.0 100 12-122 152-254 (383)
115 smart00594 UAS UAS domain. 99.2 7.1E-10 1.5E-14 75.2 10.9 67 21-87 25-96 (122)
116 PF14595 Thioredoxin_9: Thiore 99.1 5.7E-10 1.2E-14 76.6 8.9 93 14-118 32-127 (129)
117 TIGR03137 AhpC peroxiredoxin. 99.1 1.2E-09 2.6E-14 79.3 10.5 92 22-119 30-155 (187)
118 PF13728 TraF: F plasmid trans 99.1 2.7E-09 5.8E-14 79.2 11.7 90 15-116 112-214 (215)
119 TIGR02196 GlrX_YruB Glutaredox 99.1 1.1E-09 2.4E-14 66.6 7.6 68 27-116 2-73 (74)
120 PRK00522 tpx lipid hydroperoxi 99.1 2.8E-09 6E-14 76.0 10.6 43 22-65 43-86 (167)
121 PTZ00256 glutathione peroxidas 99.0 2.3E-09 5E-14 77.5 9.7 42 22-63 39-82 (183)
122 TIGR02200 GlrX_actino Glutared 99.0 5E-10 1.1E-14 69.2 5.5 57 27-90 2-63 (77)
123 cd03017 PRX_BCP Peroxiredoxin 99.0 3.5E-09 7.5E-14 72.6 9.6 75 22-96 22-128 (140)
124 cd03014 PRX_Atyp2cys Peroxired 99.0 5.3E-09 1.1E-13 72.2 9.9 73 22-95 25-128 (143)
125 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 5.1E-09 1.1E-13 70.2 9.5 69 22-90 24-121 (124)
126 cd01659 TRX_superfamily Thiore 99.0 3.3E-09 7.2E-14 61.3 7.1 60 27-87 1-63 (69)
127 PF03190 Thioredox_DsbH: Prote 99.0 1.1E-08 2.4E-13 72.5 11.0 77 12-90 28-116 (163)
128 cd03015 PRX_Typ2cys Peroxiredo 99.0 1.3E-08 2.7E-13 72.8 11.4 94 22-120 28-157 (173)
129 KOG0911 Glutaredoxin-related p 98.9 1.1E-09 2.4E-14 80.5 4.7 100 6-121 4-103 (227)
130 TIGR02739 TraF type-F conjugat 98.9 2.7E-08 5.9E-13 75.5 12.2 96 15-122 142-250 (256)
131 cd02970 PRX_like2 Peroxiredoxi 98.9 1.4E-08 3.1E-13 70.0 9.5 45 23-67 24-69 (149)
132 TIGR02180 GRX_euk Glutaredoxin 98.9 8.5E-09 1.8E-13 64.7 7.4 60 27-90 1-65 (84)
133 PRK10382 alkyl hydroperoxide r 98.9 1.8E-08 3.9E-13 73.3 10.0 94 22-121 30-157 (187)
134 cd03018 PRX_AhpE_like Peroxire 98.9 4.3E-08 9.4E-13 67.8 10.8 43 22-64 26-71 (149)
135 PRK09437 bcp thioredoxin-depen 98.9 5.5E-08 1.2E-12 68.0 10.7 44 22-65 29-74 (154)
136 PRK13190 putative peroxiredoxi 98.8 5.8E-08 1.3E-12 71.3 11.1 96 22-123 26-157 (202)
137 PF02114 Phosducin: Phosducin; 98.8 2.8E-08 6.1E-13 75.9 9.3 91 5-97 127-218 (265)
138 cd02968 SCO SCO (an acronym fo 98.8 3.3E-08 7.2E-13 67.8 7.4 43 22-64 21-68 (142)
139 PRK13703 conjugal pilus assemb 98.8 2.2E-07 4.7E-12 70.2 11.8 95 16-122 136-243 (248)
140 PF06110 DUF953: Eukaryotic pr 98.8 1.6E-07 3.5E-12 63.5 9.9 78 12-89 6-101 (119)
141 PRK15000 peroxidase; Provision 98.7 2.3E-07 5E-12 68.1 11.1 96 22-123 33-165 (200)
142 COG2143 Thioredoxin-related pr 98.7 3.9E-07 8.4E-12 63.9 11.2 95 21-125 40-154 (182)
143 KOG1672 ATP binding protein [P 98.7 1.6E-07 3.6E-12 67.8 8.7 87 6-95 69-155 (211)
144 PRK13189 peroxiredoxin; Provis 98.7 4.9E-07 1.1E-11 67.4 11.2 94 22-121 34-164 (222)
145 cd02971 PRX_family Peroxiredox 98.7 2.5E-07 5.4E-12 63.2 8.9 44 22-65 21-66 (140)
146 PRK11200 grxA glutaredoxin 1; 98.6 3.3E-07 7.2E-12 58.1 8.6 75 27-120 3-83 (85)
147 PRK10606 btuE putative glutath 98.6 2.2E-07 4.9E-12 67.3 8.1 42 21-63 23-65 (183)
148 PRK13599 putative peroxiredoxi 98.6 7.9E-07 1.7E-11 66.0 10.9 93 22-120 27-156 (215)
149 PF13192 Thioredoxin_3: Thiore 98.6 5.4E-07 1.2E-11 56.1 8.6 73 29-117 4-76 (76)
150 PRK13191 putative peroxiredoxi 98.6 7.7E-07 1.7E-11 66.1 10.8 93 22-120 32-161 (215)
151 cd02976 NrdH NrdH-redoxin (Nrd 98.6 4.2E-07 9.1E-12 54.9 7.9 51 27-83 2-56 (73)
152 PTZ00137 2-Cys peroxiredoxin; 98.6 1.3E-06 2.8E-11 66.6 11.0 93 22-120 97-225 (261)
153 KOG3425 Uncharacterized conser 98.5 8.8E-07 1.9E-11 59.4 8.3 76 11-86 12-104 (128)
154 cd03016 PRX_1cys Peroxiredoxin 98.5 2.4E-06 5.2E-11 62.7 10.9 91 24-120 26-154 (203)
155 PF11009 DUF2847: Protein of u 98.5 5.4E-06 1.2E-10 54.8 11.1 89 6-94 2-95 (105)
156 cd02991 UAS_ETEA UAS family, E 98.5 4E-06 8.8E-11 56.5 10.3 89 21-121 15-114 (116)
157 PTZ00253 tryparedoxin peroxida 98.4 6.2E-06 1.4E-10 60.3 10.8 94 22-121 35-165 (199)
158 KOG0913 Thiol-disulfide isomer 98.4 8.6E-08 1.9E-12 71.1 0.9 92 11-117 31-123 (248)
159 cd03419 GRX_GRXh_1_2_like Glut 98.4 2.7E-06 5.9E-11 53.0 7.6 58 27-90 2-64 (82)
160 TIGR02183 GRXA Glutaredoxin, G 98.3 4.4E-06 9.5E-11 53.2 7.5 73 27-118 2-80 (86)
161 TIGR03143 AhpF_homolog putativ 98.2 1.2E-05 2.6E-10 67.2 10.4 88 13-116 466-554 (555)
162 cd02066 GRX_family Glutaredoxi 98.2 1.2E-05 2.6E-10 48.1 7.4 56 27-90 2-61 (72)
163 PF00462 Glutaredoxin: Glutare 98.1 1.8E-05 3.8E-10 46.7 6.9 55 27-89 1-59 (60)
164 PRK15317 alkyl hydroperoxide r 98.1 2.9E-05 6.2E-10 64.4 10.3 91 13-118 106-196 (517)
165 TIGR03143 AhpF_homolog putativ 98.1 6.7E-05 1.5E-09 62.8 12.3 109 11-129 354-463 (555)
166 cd02983 P5_C P5 family, C-term 98.1 0.00013 2.8E-09 50.0 11.2 119 4-133 3-128 (130)
167 TIGR02190 GlrX-dom Glutaredoxi 98.0 4.8E-05 1E-09 47.5 7.8 59 24-90 7-68 (79)
168 TIGR02194 GlrX_NrdH Glutaredox 98.0 4E-05 8.6E-10 46.9 7.3 59 28-97 2-63 (72)
169 PHA03050 glutaredoxin; Provisi 98.0 3E-05 6.5E-10 51.6 7.1 59 27-90 15-80 (108)
170 PRK10329 glutaredoxin-like pro 98.0 9.1E-05 2E-09 46.7 8.1 72 27-120 3-77 (81)
171 PRK10824 glutaredoxin-4; Provi 97.9 4.5E-05 9.8E-10 51.3 6.8 70 12-90 6-81 (115)
172 cd03027 GRX_DEP Glutaredoxin ( 97.9 8.5E-05 1.8E-09 45.5 7.6 56 27-90 3-62 (73)
173 TIGR02189 GlrX-like_plant Glut 97.9 0.0001 2.2E-09 48.2 7.9 56 27-90 10-72 (99)
174 PF13848 Thioredoxin_6: Thiore 97.9 0.00047 1E-08 48.8 11.7 95 11-117 84-183 (184)
175 cd03029 GRX_hybridPRX5 Glutare 97.9 0.00021 4.5E-09 43.6 8.2 56 27-90 3-61 (72)
176 PRK10877 protein disulfide iso 97.8 0.00024 5.1E-09 53.4 9.9 81 22-119 106-230 (232)
177 cd03418 GRX_GRXb_1_3_like Glut 97.8 0.00025 5.4E-09 43.3 8.4 56 27-90 2-62 (75)
178 TIGR02181 GRX_bact Glutaredoxi 97.8 0.00014 3E-09 45.1 7.2 56 27-90 1-60 (79)
179 TIGR00365 monothiol glutaredox 97.8 0.00019 4.1E-09 46.7 7.8 68 12-90 3-78 (97)
180 TIGR03140 AhpF alkyl hydropero 97.8 0.00027 5.9E-09 58.7 10.4 74 14-90 108-181 (515)
181 cd03019 DsbA_DsbA DsbA family, 97.7 0.00038 8.2E-09 49.2 8.9 37 22-58 14-50 (178)
182 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 0.00027 5.8E-09 51.5 8.1 26 22-47 76-101 (197)
183 cd02981 PDI_b_family Protein D 97.6 0.001 2.2E-08 42.5 9.2 94 6-117 2-95 (97)
184 cd03028 GRX_PICOT_like Glutare 97.6 0.00068 1.5E-08 43.4 7.6 59 24-90 8-74 (90)
185 PRK10954 periplasmic protein d 97.5 0.00062 1.3E-08 50.1 8.0 37 23-59 37-76 (207)
186 cd02972 DsbA_family DsbA famil 97.5 0.00063 1.4E-08 42.6 6.8 58 27-84 1-90 (98)
187 COG1225 Bcp Peroxiredoxin [Pos 97.5 0.0018 4E-08 45.8 9.6 45 21-65 28-74 (157)
188 PRK11657 dsbG disulfide isomer 97.4 0.0021 4.6E-08 48.8 10.1 29 22-50 116-144 (251)
189 COG1331 Highly conserved prote 97.4 0.0016 3.4E-08 55.3 9.9 77 12-90 34-122 (667)
190 KOG2603 Oligosaccharyltransfer 97.4 0.0013 2.7E-08 51.2 8.6 93 24-119 61-165 (331)
191 PF05768 DUF836: Glutaredoxin- 97.4 0.0018 3.9E-08 40.5 8.0 52 27-81 2-53 (81)
192 KOG3170 Conserved phosducin-li 97.4 0.0022 4.7E-08 47.0 9.1 102 6-119 94-200 (240)
193 KOG3171 Conserved phosducin-li 97.4 0.00074 1.6E-08 50.0 6.6 85 4-90 139-224 (273)
194 PF01216 Calsequestrin: Calseq 97.4 0.0056 1.2E-07 48.4 11.6 98 11-121 41-145 (383)
195 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00057 1.2E-08 45.4 4.7 80 11-93 16-98 (107)
196 cd03023 DsbA_Com1_like DsbA fa 97.3 0.00094 2E-08 45.7 5.9 40 22-62 4-43 (154)
197 PTZ00062 glutaredoxin; Provisi 97.3 0.0023 5E-08 47.2 8.1 61 24-90 113-179 (204)
198 PRK10638 glutaredoxin 3; Provi 97.2 0.0024 5.2E-08 40.0 6.8 56 27-90 4-63 (83)
199 COG0695 GrxC Glutaredoxin and 97.2 0.0028 6.1E-08 39.7 6.8 56 27-90 3-64 (80)
200 cd03072 PDI_b'_ERp44 PDIb' fam 97.0 0.0062 1.3E-07 40.5 7.9 90 22-122 15-110 (111)
201 KOG1752 Glutaredoxin and relat 96.9 0.0073 1.6E-07 39.9 6.9 68 13-90 6-78 (104)
202 PF00837 T4_deiodinase: Iodoth 96.9 0.0098 2.1E-07 44.7 8.4 40 21-60 100-139 (237)
203 PRK12759 bifunctional gluaredo 96.9 0.0078 1.7E-07 48.8 8.5 56 27-90 4-71 (410)
204 PF13462 Thioredoxin_4: Thiore 96.6 0.011 2.3E-07 41.0 6.9 42 22-63 11-54 (162)
205 cd03073 PDI_b'_ERp72_ERp57 PDI 96.4 0.035 7.5E-07 36.9 8.1 74 36-119 31-110 (111)
206 PF07912 ERp29_N: ERp29, N-ter 96.1 0.091 2E-06 35.7 8.6 96 11-119 11-118 (126)
207 cd03013 PRX5_like Peroxiredoxi 95.8 0.028 6.1E-07 39.4 5.6 43 24-66 31-76 (155)
208 PF13848 Thioredoxin_6: Thiore 95.8 0.082 1.8E-06 37.2 8.0 67 41-119 8-74 (184)
209 cd02974 AhpF_NTD_N Alkyl hydro 95.4 0.42 9.1E-06 30.8 10.8 87 11-119 7-93 (94)
210 PRK15317 alkyl hydroperoxide r 95.3 0.45 9.8E-06 39.6 11.7 97 11-129 7-103 (517)
211 cd03031 GRX_GRX_like Glutaredo 95.3 0.2 4.3E-06 35.1 8.1 56 27-90 2-71 (147)
212 TIGR03140 AhpF alkyl hydropero 95.2 0.51 1.1E-05 39.3 11.8 98 11-129 7-104 (515)
213 cd02978 KaiB_like KaiB-like fa 94.1 0.31 6.6E-06 30.0 5.9 57 26-82 3-60 (72)
214 PHA03075 glutaredoxin-like pro 93.9 0.12 2.6E-06 34.7 4.2 30 24-53 2-31 (123)
215 cd03067 PDI_b_PDIR_N PDIb fami 93.7 1.3 2.8E-05 29.2 8.7 83 5-90 3-91 (112)
216 cd02977 ArsC_family Arsenate R 93.6 0.042 9.2E-07 35.8 1.5 33 28-66 2-34 (105)
217 cd03069 PDI_b_ERp57 PDIb famil 93.5 1.3 2.8E-05 28.7 9.2 71 5-85 2-72 (104)
218 cd03066 PDI_b_Calsequestrin_mi 93.5 1.3 2.7E-05 28.6 9.6 98 5-119 2-100 (102)
219 PF06053 DUF929: Domain of unk 93.4 0.24 5.3E-06 37.6 5.6 34 21-54 56-89 (249)
220 PRK09301 circadian clock prote 92.4 0.58 1.3E-05 30.8 5.5 60 23-82 5-65 (103)
221 TIGR02654 circ_KaiB circadian 92.3 0.65 1.4E-05 29.6 5.6 58 25-82 4-62 (87)
222 KOG2640 Thioredoxin [Function 92.3 0.053 1.1E-06 42.3 0.7 69 15-84 68-137 (319)
223 cd03036 ArsC_like Arsenate Red 91.2 0.08 1.7E-06 35.1 0.6 57 28-90 2-62 (111)
224 cd03060 GST_N_Omega_like GST_N 91.2 0.45 9.7E-06 28.4 3.9 50 28-81 2-52 (71)
225 COG0278 Glutaredoxin-related p 90.4 1.3 2.7E-05 29.1 5.5 70 13-90 7-82 (105)
226 cd03051 GST_N_GTT2_like GST_N 90.3 0.41 8.8E-06 28.3 3.1 50 29-82 3-56 (74)
227 PF06491 Disulph_isomer: Disul 90.3 1.2 2.7E-05 30.5 5.6 106 5-120 18-132 (136)
228 cd00570 GST_N_family Glutathio 90.0 0.47 1E-05 27.1 3.2 49 29-81 3-53 (71)
229 cd03059 GST_N_SspA GST_N famil 90.0 2 4.3E-05 25.3 6.0 50 28-81 2-52 (73)
230 cd03037 GST_N_GRX2 GST_N famil 90.0 0.9 2E-05 26.9 4.5 49 29-81 3-51 (71)
231 KOG2792 Putative cytochrome C 89.8 3.7 8.1E-05 31.5 8.4 42 22-63 138-186 (280)
232 KOG2507 Ubiquitin regulatory p 89.3 6.6 0.00014 32.3 9.9 98 14-121 8-112 (506)
233 PF04592 SelP_N: Selenoprotein 89.3 1 2.2E-05 33.9 5.1 50 17-66 20-73 (238)
234 cd03041 GST_N_2GST_N GST_N fam 89.2 0.84 1.8E-05 27.7 4.0 48 28-81 3-54 (77)
235 PF02630 SCO1-SenC: SCO1/SenC; 89.1 2 4.2E-05 30.6 6.3 44 21-64 50-97 (174)
236 TIGR01617 arsC_related transcr 87.9 1.3 2.9E-05 29.3 4.6 34 28-67 2-35 (117)
237 PF13462 Thioredoxin_4: Thiore 87.9 1.2 2.6E-05 30.5 4.5 35 69-118 128-162 (162)
238 PRK01655 spxA transcriptional 87.6 1.5 3.3E-05 29.8 4.8 35 27-67 2-36 (131)
239 cd03035 ArsC_Yffb Arsenate Red 87.5 0.67 1.5E-05 30.4 2.9 33 28-66 2-34 (105)
240 PF13417 GST_N_3: Glutathione 87.1 4.7 0.0001 24.1 6.6 70 30-121 2-72 (75)
241 PF07689 KaiB: KaiB domain; I 86.7 1.1 2.4E-05 28.2 3.4 52 30-81 3-55 (82)
242 COG2761 FrnE Predicted dithiol 86.1 1.8 4E-05 32.4 4.8 42 69-124 176-217 (225)
243 PF09673 TrbC_Ftype: Type-F co 85.9 8 0.00017 25.7 7.4 45 40-86 36-80 (113)
244 cd03040 GST_N_mPGES2 GST_N fam 85.6 4.1 8.8E-05 24.4 5.5 50 28-82 3-52 (77)
245 COG4545 Glutaredoxin-related p 85.4 0.57 1.2E-05 29.1 1.5 63 24-90 3-76 (85)
246 PF01323 DSBA: DSBA-like thior 84.9 2.2 4.8E-05 30.1 4.7 34 69-116 159-192 (193)
247 PF13743 Thioredoxin_5: Thiore 83.6 3 6.5E-05 29.8 4.9 30 29-58 2-31 (176)
248 COG1999 Uncharacterized protei 82.4 4.4 9.5E-05 29.8 5.5 32 22-53 66-98 (207)
249 cd03045 GST_N_Delta_Epsilon GS 82.3 1.3 2.8E-05 26.2 2.3 51 28-82 2-56 (74)
250 PRK12559 transcriptional regul 81.5 4.2 9.1E-05 27.7 4.8 34 27-66 2-35 (131)
251 TIGR02742 TrbC_Ftype type-F co 81.2 13 0.00028 25.5 7.0 25 64-88 58-82 (130)
252 cd03032 ArsC_Spx Arsenate Redu 80.2 6.5 0.00014 25.9 5.3 33 28-66 3-35 (115)
253 COG0386 BtuE Glutathione perox 79.8 11 0.00024 26.8 6.4 62 19-85 21-95 (162)
254 COG3019 Predicted metal-bindin 79.4 5.3 0.00012 27.8 4.6 45 25-75 26-70 (149)
255 PRK13344 spxA transcriptional 77.4 7.2 0.00016 26.6 4.9 34 27-66 2-35 (132)
256 COG3531 Predicted protein-disu 75.4 7.6 0.00017 28.7 4.7 46 68-121 165-210 (212)
257 cd03055 GST_N_Omega GST_N fami 74.5 11 0.00023 23.5 4.8 52 27-82 19-71 (89)
258 KOG0911 Glutaredoxin-related p 74.0 24 0.00052 26.5 7.1 62 23-90 138-205 (227)
259 COG0450 AhpC Peroxiredoxin [Po 73.7 33 0.00072 25.2 9.5 44 22-65 32-77 (194)
260 cd03024 DsbA_FrnE DsbA family, 71.7 3.4 7.4E-05 29.5 2.3 35 68-116 166-200 (201)
261 cd03023 DsbA_Com1_like DsbA fa 71.5 6 0.00013 26.5 3.4 34 68-116 120-153 (154)
262 PF09822 ABC_transp_aux: ABC-t 70.6 43 0.00094 25.3 12.4 58 22-79 23-90 (271)
263 cd03068 PDI_b_ERp72 PDIb famil 67.3 31 0.00068 22.4 8.0 71 6-84 3-73 (107)
264 cd03056 GST_N_4 GST_N family, 62.3 7.9 0.00017 22.5 2.2 50 29-82 3-56 (73)
265 TIGR00216 ispH_lytB (E)-4-hydr 59.9 20 0.00043 27.9 4.5 81 28-120 185-277 (280)
266 PF13743 Thioredoxin_5: Thiore 59.9 7.9 0.00017 27.6 2.2 18 68-85 138-155 (176)
267 cd02990 UAS_FAF1 UAS family, F 59.4 56 0.0012 22.5 12.0 90 22-120 20-133 (136)
268 cd03025 DsbA_FrnE_like DsbA fa 58.0 7 0.00015 27.6 1.7 21 68-88 160-180 (193)
269 cd03074 PDI_b'_Calsequestrin_C 58.0 54 0.0012 21.9 9.4 91 23-119 20-119 (120)
270 cd03025 DsbA_FrnE_like DsbA fa 58.0 17 0.00037 25.6 3.7 27 27-53 3-29 (193)
271 COG1651 DsbG Protein-disulfide 57.0 26 0.00056 25.9 4.7 30 24-53 85-114 (244)
272 COG0295 Cdd Cytidine deaminase 56.9 27 0.0006 24.1 4.3 9 35-43 88-96 (134)
273 COG3634 AhpF Alkyl hydroperoxi 56.6 60 0.0013 26.6 6.7 74 14-90 107-180 (520)
274 cd03052 GST_N_GDAP1 GST_N fami 56.5 40 0.00087 20.0 4.9 56 28-89 2-61 (73)
275 COG1651 DsbG Protein-disulfide 56.3 11 0.00025 27.8 2.6 27 24-50 119-145 (244)
276 PRK12360 4-hydroxy-3-methylbut 55.5 46 0.00099 25.9 5.9 80 29-120 187-278 (281)
277 cd03033 ArsC_15kD Arsenate Red 55.2 20 0.00043 23.7 3.4 33 27-65 2-34 (113)
278 KOG0855 Alkyl hydroperoxide re 55.2 8.2 0.00018 27.9 1.6 32 22-53 89-121 (211)
279 KOG2990 C2C2-type Zn-finger pr 55.0 15 0.00033 28.6 3.1 34 11-44 28-64 (317)
280 PF00255 GSHPx: Glutathione pe 54.6 44 0.00095 22.0 4.9 34 20-54 18-51 (108)
281 PF01323 DSBA: DSBA-like thior 52.1 31 0.00067 24.1 4.3 29 26-54 1-29 (193)
282 cd03030 GRX_SH3BGR Glutaredoxi 50.2 65 0.0014 20.5 5.4 36 55-90 30-71 (92)
283 KOG2244 Highly conserved prote 49.3 7.4 0.00016 33.2 0.7 72 11-84 102-184 (786)
284 TIGR02652 conserved hypothetic 47.9 6.3 0.00014 27.5 0.1 13 34-46 11-23 (163)
285 PF09654 DUF2396: Protein of u 47.7 6.1 0.00013 27.5 -0.0 13 34-46 8-20 (161)
286 PRK01045 ispH 4-hydroxy-3-meth 47.7 68 0.0015 25.2 5.8 86 26-123 185-282 (298)
287 PF13778 DUF4174: Domain of un 47.3 82 0.0018 20.9 9.3 85 23-119 10-111 (118)
288 cd03053 GST_N_Phi GST_N family 45.9 30 0.00064 20.3 2.9 50 28-81 3-56 (76)
289 KOG1651 Glutathione peroxidase 43.2 1.2E+02 0.0027 21.8 6.6 66 20-85 31-105 (171)
290 cd03061 GST_N_CLIC GST_N famil 42.5 89 0.0019 19.9 5.6 67 32-120 19-86 (91)
291 KOG0833 Cytidine deaminase [Nu 42.3 19 0.00042 25.9 1.8 17 30-47 101-117 (173)
292 PRK09481 sspA stringent starva 42.1 88 0.0019 22.4 5.4 56 23-82 7-63 (211)
293 KOG1364 Predicted ubiquitin re 41.6 50 0.0011 26.5 4.2 56 60-125 137-194 (356)
294 COG4604 CeuD ABC-type enteroch 41.5 79 0.0017 23.9 4.9 49 35-91 168-216 (252)
295 COG0821 gcpE 1-hydroxy-2-methy 40.7 1.4E+02 0.003 24.1 6.5 85 24-121 255-352 (361)
296 COG3411 Ferredoxin [Energy pro 39.8 82 0.0018 18.9 4.0 33 78-124 17-49 (64)
297 TIGR02174 CXXU_selWTH selT/sel 39.0 22 0.00049 21.4 1.6 29 81-116 43-71 (72)
298 PF06764 DUF1223: Protein of u 37.6 1.7E+02 0.0036 21.6 8.3 80 29-122 4-100 (202)
299 PF02702 KdpD: Osmosensitive K 36.4 1.8E+02 0.0039 21.7 7.8 68 22-90 3-71 (211)
300 PF11287 DUF3088: Protein of u 35.1 1.4E+02 0.003 20.0 5.0 80 35-119 24-106 (112)
301 COG5429 Uncharacterized secret 35.1 79 0.0017 24.1 4.1 80 26-119 44-140 (261)
302 cd03034 ArsC_ArsC Arsenate Red 34.2 52 0.0011 21.5 2.9 33 28-66 2-34 (112)
303 PF14097 SpoVAE: Stage V sporu 33.9 64 0.0014 23.3 3.4 26 6-31 35-60 (180)
304 PRK00087 4-hydroxy-3-methylbut 33.1 98 0.0021 26.9 5.0 52 29-82 184-237 (647)
305 cd03054 GST_N_Metaxin GST_N fa 33.1 46 0.00099 19.3 2.3 16 32-47 13-28 (72)
306 PF02401 LYTB: LytB protein; 33.0 13 0.00028 28.9 -0.3 84 25-121 183-279 (281)
307 KOG1371 UDP-glucose 4-epimeras 32.3 2.7E+02 0.0058 22.4 6.9 68 17-90 21-90 (343)
308 PF04134 DUF393: Protein of un 32.3 76 0.0016 20.3 3.4 57 30-90 2-63 (114)
309 PF09499 RE_ApaLI: ApaLI-like 31.6 1.9E+02 0.0041 21.1 5.4 47 8-54 128-174 (191)
310 COG0836 {ManC} Mannose-1-phosp 31.4 1.3E+02 0.0028 24.1 5.0 49 78-142 106-156 (333)
311 PF07700 HNOB: Heme NO binding 31.4 1.7E+02 0.0037 20.4 5.4 41 23-63 127-168 (171)
312 COG1393 ArsC Arsenate reductas 31.4 75 0.0016 21.2 3.3 22 27-48 3-24 (117)
313 cd03049 GST_N_3 GST_N family, 30.8 1.1E+02 0.0024 17.6 4.1 51 29-81 3-54 (73)
314 KOG4079 Putative mitochondrial 30.4 83 0.0018 21.9 3.4 15 83-97 80-94 (169)
315 PF04748 Polysacc_deac_2: Dive 30.0 2.3E+02 0.0049 20.9 6.8 78 35-138 102-187 (213)
316 PF06122 TraH: Conjugative rel 29.7 45 0.00098 26.7 2.3 23 32-54 94-116 (361)
317 TIGR00014 arsC arsenate reduct 29.6 68 0.0015 21.0 2.9 33 28-66 2-34 (114)
318 PRK08384 thiamine biosynthesis 29.6 1.7E+02 0.0038 23.7 5.6 92 33-141 263-360 (381)
319 cd03038 GST_N_etherase_LigE GS 27.5 1E+02 0.0022 18.5 3.2 17 32-48 13-29 (84)
320 PF00352 TBP: Transcription fa 26.5 1.6E+02 0.0034 18.2 4.0 31 79-121 50-80 (86)
321 PRK10853 putative reductase; P 25.8 1E+02 0.0022 20.4 3.2 33 27-65 2-34 (118)
322 COG3581 Uncharacterized protei 25.3 1.8E+02 0.0039 23.9 4.9 33 30-62 76-111 (420)
323 CHL00135 rps10 ribosomal prote 25.3 2E+02 0.0043 18.7 4.7 34 108-141 17-50 (101)
324 TIGR01616 nitro_assoc nitrogen 23.8 1.4E+02 0.003 20.1 3.6 21 27-47 3-23 (126)
325 COG5575 ORC2 Origin recognitio 23.6 1.2E+02 0.0025 25.1 3.6 49 37-89 242-290 (535)
326 COG1999 Uncharacterized protei 23.3 3E+02 0.0065 20.1 7.1 15 108-122 192-206 (207)
327 PRK12411 cytidine deaminase; P 23.0 54 0.0012 22.4 1.4 12 34-45 85-96 (132)
328 PF09936 Methyltrn_RNA_4: SAM- 23.0 1.3E+02 0.0028 22.0 3.4 21 13-34 123-143 (185)
329 PRK05578 cytidine deaminase; V 22.9 56 0.0012 22.3 1.5 13 33-45 84-96 (131)
330 PRK00366 ispG 4-hydroxy-3-meth 22.9 4.2E+02 0.009 21.5 6.7 57 35-91 271-338 (360)
331 TIGR02949 anti_SigH_actin anti 22.9 96 0.0021 19.2 2.5 19 33-51 37-55 (84)
332 PF13120 DUF3974: Domain of un 22.5 56 0.0012 21.3 1.3 22 30-51 32-53 (126)
333 PF11774 Lsr2: Lsr2 ; InterPr 22.1 1.4E+02 0.0031 19.7 3.3 38 79-126 20-57 (110)
334 PRK10026 arsenate reductase; P 22.0 1.4E+02 0.0031 20.6 3.4 21 27-47 4-24 (141)
335 PRK13730 conjugal transfer pil 21.7 1.8E+02 0.0038 21.7 3.9 20 66-85 151-170 (212)
336 TIGR02743 TraW type-F conjugat 21.4 1.2E+02 0.0026 22.3 3.1 27 64-91 172-198 (202)
337 COG2101 SPT15 TATA-box binding 21.2 3E+02 0.0065 20.0 4.9 34 80-125 55-88 (185)
338 PF14216 DUF4326: Domain of un 21.2 77 0.0017 20.0 1.8 27 9-40 52-80 (86)
339 PF08265 YL1_C: YL1 nuclear pr 21.0 43 0.00092 16.9 0.5 15 128-142 7-21 (30)
340 PF03960 ArsC: ArsC family; I 21.0 1.1E+02 0.0024 19.7 2.6 32 30-67 1-32 (110)
341 COG5441 Uncharacterized conser 20.8 1.2E+02 0.0027 24.2 3.1 87 23-120 273-363 (401)
342 cd03044 GST_N_EF1Bgamma GST_N 20.6 1.8E+02 0.0039 16.9 3.3 48 30-81 4-54 (75)
343 PF10589 NADH_4Fe-4S: NADH-ubi 20.4 42 0.0009 18.4 0.4 18 33-50 17-34 (46)
344 PRK10387 glutaredoxin 2; Provi 20.4 3.2E+02 0.0069 19.2 5.7 19 30-48 4-22 (210)
345 cd06408 PB1_NoxR The PB1 domai 20.3 2.4E+02 0.0053 17.8 5.1 57 53-123 10-71 (86)
346 cd03021 DsbA_GSTK DsbA family, 20.2 81 0.0017 22.8 2.0 14 70-83 172-185 (209)
347 cd03048 GST_N_Ure2p_like GST_N 20.2 94 0.002 18.4 2.0 49 29-81 3-55 (81)
348 KOG1731 FAD-dependent sulfhydr 20.2 1.2E+02 0.0025 26.3 3.0 51 73-133 232-282 (606)
349 PRK06848 hypothetical protein; 20.2 66 0.0014 22.2 1.4 12 34-45 96-107 (139)
No 1
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=100.00 E-value=1.2e-39 Score=226.07 Aligned_cols=141 Identities=94% Similarity=1.454 Sum_probs=127.5
Q ss_pred CccccccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcE
Q 032360 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 m~~~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt 80 (142)
||+.+++++|.++|++++..+++++|||+|||+|||||+.|.|.|+++++++++.+.|+.||+|+++++++.|+|.++||
T Consensus 1 ~~~~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t 80 (142)
T PLN00410 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCT 80 (142)
T ss_pred CcchHhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCc
Confidence 89999999999999999987778999999999999999999999999999998667778899999999999999997777
Q ss_pred EE-EEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCceEECcCCchhhccC
Q 032360 81 VM-FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142 (142)
Q Consensus 81 ~~-~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (142)
++ ||++|+. ....+.+++.|+++.+.+.++|.+.++.+++++.+|+||+.||.|++|+|||
T Consensus 81 ~~~ffk~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~~~~~~~ 142 (142)
T PLN00410 81 VMFFFRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDYSTKYRY 142 (142)
T ss_pred EEEEEECCeE-EEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcccccccC
Confidence 76 6666653 3455555678888888899999999999999999999999999999999997
No 2
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.4e-34 Score=190.65 Aligned_cols=142 Identities=79% Similarity=1.324 Sum_probs=138.8
Q ss_pred CccccccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcE
Q 032360 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 m~~~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt 80 (142)
||+++|+|+|++++++++..+..++|+|.|+-+|-|.|.+|...|.++++...+..+++.||+++.+++.+.|++..+||
T Consensus 1 ms~lLp~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~t 80 (142)
T KOG3414|consen 1 MSYLLPTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPT 80 (142)
T ss_pred CceeccccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCce
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCceEECcCCchhhccC
Q 032360 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142 (142)
Q Consensus 81 ~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (142)
++||.+++.+...+|.++++||+|.+.+.++|.++++.+++|+++|+|||.||.||+|+|||
T Consensus 81 vmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy~~~y~~ 142 (142)
T KOG3414|consen 81 VMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGKGIVQSPKDYSTLYRY 142 (142)
T ss_pred EEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCCeEEECCcchHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 3
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=100.00 E-value=6.6e-32 Score=180.16 Aligned_cols=113 Identities=38% Similarity=0.760 Sum_probs=106.9
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
..+|++.+.+.++++|||+|+|+|||||+.|.|.|+++++++++.+.|+.||+|+++++++.|+|...||++||++|+.+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46789999877899999999999999999999999999999985588899999999999999999999999999999999
Q ss_pred EEEeccccccccccccCChhHHHHHHHHHHhhh
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
..++|.++++|+++.+.+.++|.++|+.+++|+
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr~a 114 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 114 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHHHcCC
Confidence 999999999999999999999999999998875
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.97 E-value=8.3e-31 Score=175.72 Aligned_cols=113 Identities=81% Similarity=1.375 Sum_probs=104.9
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+.+++++.+..+.+++++|+|||+|||||+.|.|.++++++++++.+.|+.||+|++++++++|+|.++||+++|++|+.
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 46788999886678899999999999999999999999999998667888999999999999999999999999999999
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
+....|..+..+|.+.+.+.+.|.++++.++++
T Consensus 81 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (114)
T cd02954 81 MKIDLGTGNNNKINWVFEDKQEFIDIIETIYRG 113 (114)
T ss_pred EEEEcCCCCCceEEEecCcHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998765
No 5
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.96 E-value=3.4e-28 Score=164.28 Aligned_cols=133 Identities=80% Similarity=1.403 Sum_probs=118.7
Q ss_pred ccccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 4 LLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 4 ~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
++++|+|++++|+++..+++|+|+|.|+.+|-+.|.+|...|.+++++.++..+++.||+++.+++.+.|++..+-|++|
T Consensus 1 ~L~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmF 80 (133)
T PF02966_consen 1 LLPHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMF 80 (133)
T ss_dssp SSEEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEE
T ss_pred CCcccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999998888888999999999999999997777888
Q ss_pred EecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCceEECcCCc
Q 032360 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDY 136 (142)
Q Consensus 84 ~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~ 136 (142)
|.+|+.+..++|.++++|++|.+.+.++|.++|+.+++|+.+|+||+.||+||
T Consensus 81 F~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 81 FFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp EETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT-SEEE-SS-G
T ss_pred EecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcCCeeEeCCCCC
Confidence 88999999999999999999999999999999999999999999999999986
No 6
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.4e-27 Score=161.96 Aligned_cols=104 Identities=18% Similarity=0.383 Sum_probs=93.7
Q ss_pred cCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 7 ~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
...+..+|++.+.+ .+.||+|+|||+||+||+.+.|.++++..+|.+.+.+++||+|+..+++..|+|..+||+++|++
T Consensus 46 ~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfkn 124 (150)
T KOG0910|consen 46 NVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKN 124 (150)
T ss_pred cccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEEC
Confidence 45677889888875 67999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
|+++....|.. +.+.|.+.|++.+.
T Consensus 125 Ge~~d~~vG~~----------~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 125 GEKVDRFVGAV----------PKEQLRSLIKKFLK 149 (150)
T ss_pred CEEeeeecccC----------CHHHHHHHHHHHhc
Confidence 99986666665 88999999998764
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=7.2e-25 Score=144.91 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=83.3
Q ss_pred CChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc---cHHhhccccCCcEEEEEe
Q 032360 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP---DFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 9 ~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~---~~~~~~~v~~~Pt~~~~~ 85 (142)
++.++|++.+.+..+++|+|+|||+||+||+.+.|.++++++++ +.+.++.||.|+++ +++++|+|.++||++||+
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46789999998767999999999999999999999999999998 46788889999875 799999999999999998
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHHH
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
+|+.+.. +.|. ++++|.+.|..
T Consensus 80 ~G~~v~~-~~G~----------~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHE-EEGI----------GPDELIGDVLY 101 (103)
T ss_pred CCeEEEE-EeCC----------CHHHHHHHHHh
Confidence 8877644 4445 67777776643
No 8
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=9.1e-25 Score=144.64 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=74.8
Q ss_pred CChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc----ccHHhhccccCCcEEEEE
Q 032360 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 9 ~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~ 84 (142)
++..+|++.+. ++++++|+|||+|||||+.|.|.++++++++.....++.+|+|.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 45678888884 578999999999999999999999999987654466888999986 689999999999999999
Q ss_pred ecCcEEEEEeccc
Q 032360 85 FRNKHIMIDLGTG 97 (142)
Q Consensus 85 ~~g~~v~~~~~~~ 97 (142)
++|+.+.+..|..
T Consensus 80 k~G~~v~~~~G~~ 92 (103)
T PHA02278 80 KDGQLVKKYEDQV 92 (103)
T ss_pred ECCEEEEEEeCCC
Confidence 9999887666655
No 9
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-25 Score=146.47 Aligned_cols=95 Identities=18% Similarity=0.338 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEE
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~ 92 (142)
++........+++++|+|||+|||||+.+.|.+.+|+.+|++ +.|+.||+|+.+++++.++|..+|||.||++|+.+..
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEE
Confidence 333333444579999999999999999999999999999986 8899999999999999999999999999999999876
Q ss_pred EeccccccccccccCChhHHHHHHHHH
Q 032360 93 DLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
..|+ +++++.+.|+++
T Consensus 90 ~vGa-----------~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 90 VVGA-----------NKAELEKKIAKH 105 (106)
T ss_pred EecC-----------CHHHHHHHHHhc
Confidence 6664 567777777653
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.91 E-value=1.8e-23 Score=137.92 Aligned_cols=98 Identities=9% Similarity=0.174 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 7 ~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
.++|..++++++. .+++++|+|||+||+||+.+.|.+.++++++++. +.+..+|+| +++++++|+|.++||+++|+
T Consensus 3 ~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 5688999999874 5789999999999999999999999999988643 567789999 77899999999999999999
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHHH
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
+|+.+.+..| . +++++.+.|++
T Consensus 80 ~g~~~~~~~G-~----------~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVIRG-A----------NAPLLNKTITE 101 (102)
T ss_pred CCEEEEEEec-C----------ChHHHHHHHhh
Confidence 8888865544 4 67888888875
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.9e-23 Score=135.72 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEE
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~ 92 (142)
+|++.+.++.+++++|+|||+||++|+++.|.++++++.+++.+.++.||++++++++++|+|.++||+++|++|+.+..
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 46777766668999999999999999999999999999987667778899999999999999999999999998877655
Q ss_pred EeccccccccccccCChhHHHHHHH
Q 032360 93 DLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
..|.. +.++|.++|+
T Consensus 82 ~~g~~----------~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQ----------PEEQLRQMLD 96 (96)
T ss_pred ecCCC----------CHHHHHHHhC
Confidence 44444 6778877663
No 12
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-23 Score=155.59 Aligned_cols=122 Identities=19% Similarity=0.258 Sum_probs=105.2
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
+..+.+..+|+..+....+|.|+|+|+|+|||||++++|+|.+|+.+|+ ..+|.+||+|+.+..+..++|+..|||++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 4667889999999988888999999999999999999999999999997 468889999999999999999999999999
Q ss_pred ecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhh---cCCceEECcCCchh
Q 032360 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR---KGRGLVIAPKDYST 138 (142)
Q Consensus 85 ~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~---~~~~~~~~~~~~~~ 138 (142)
.+|.++. .+.|+ ++..|++.|.++...+. .+..++++-|++.+
T Consensus 82 ~ng~kid-~~qGA----------d~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~ 127 (288)
T KOG0908|consen 82 RNGVKID-QIQGA----------DASGLEEKVAKYASTSAASSGTGDIVKGQMDLKP 127 (288)
T ss_pred ecCeEee-eecCC----------CHHHHHHHHHHHhccCcccccCCCcccceehhhh
Confidence 9999884 55666 88999999999875442 22347788787765
No 13
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=7.5e-23 Score=137.54 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=73.4
Q ss_pred hHHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHH-hhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFN-TMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~-~~~~v~~~Pt~~~~~~g~ 88 (142)
..+|++++. .+++++++|.|||+||+||+.+.|.++++++++++.+.++.||++++++++ ++|+|.++||+.+|++|+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 456777632 346899999999999999999999999999999876778889999999998 589999999999999888
Q ss_pred EEEEEeccc
Q 032360 89 HIMIDLGTG 97 (142)
Q Consensus 89 ~v~~~~~~~ 97 (142)
......|+.
T Consensus 96 ~~~~y~G~~ 104 (113)
T cd03006 96 GPIEYKGPM 104 (113)
T ss_pred cceEEeCCC
Confidence 764444444
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=2.1e-22 Score=131.42 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=88.9
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+..+|++.+.+ .+++++|.||++||++|+.+.|.+.++++++++.+.++.||++++++++++|+|.++||+++|++|+.
T Consensus 5 t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 5 TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE 83 (103)
T ss_dssp STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE
T ss_pred CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcE
Confidence 46678888875 57999999999999999999999999999998778889999999999999999999999999999999
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+....|.. +.++|.++|+++
T Consensus 84 ~~~~~g~~----------~~~~l~~~i~~~ 103 (103)
T PF00085_consen 84 VKRYNGPR----------NAESLIEFIEKH 103 (103)
T ss_dssp EEEEESSS----------SHHHHHHHHHHH
T ss_pred EEEEECCC----------CHHHHHHHHHcC
Confidence 97666655 889999999874
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=8.6e-23 Score=138.45 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=87.4
Q ss_pred cCCChHHHHHHHHhcCCCEEEEEEeCCCCHH--HH--HHHHHHHHHHHHh--cCCeEEEEEeCCCcccHHhhccccCCcE
Q 032360 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDET--CM--QMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 7 ~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~--C~--~~~p~l~~l~~~~--~~~~~~~~vd~d~~~~~~~~~~v~~~Pt 80 (142)
.++ ..+|++.+.+ .+.++|++|||+||+| |+ ++.|.+.++++++ ++.+.+++||+|++++++++|+|.++||
T Consensus 13 ~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPT 90 (120)
T cd03065 13 DLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDS 90 (120)
T ss_pred eCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccE
Confidence 344 5789988875 4679999999999988 99 8999999999998 6678999999999999999999999999
Q ss_pred EEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 81 ~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+++|++|+.+. ..|.. ++++|.++|++++
T Consensus 91 l~lfk~G~~v~-~~G~~----------~~~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIE-YDGEF----------AADTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEE-eeCCC----------CHHHHHHHHHHHh
Confidence 99999998764 44444 8899999998875
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=7.9e-23 Score=134.63 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC-CcccHHhhccccCCcEEEEEecCcEEE
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d-~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
++.+++...+|++++|+|||+||++|+++.|.+++++++++ .+.++.||.+ ++++++++|+|.++||+++|++| .+.
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee
Confidence 34456666789999999999999999999999999999987 4677789998 88999999999999999999888 554
Q ss_pred EEeccccccccccccCChhHHHHH
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~ 115 (142)
...|.. +.++|.++
T Consensus 86 ~~~G~~----------~~~~l~~f 99 (100)
T cd02999 86 RYNGTR----------TLDSLAAF 99 (100)
T ss_pred EecCCC----------CHHHHHhh
Confidence 444443 66776654
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=4e-22 Score=132.45 Aligned_cols=108 Identities=17% Similarity=0.337 Sum_probs=90.9
Q ss_pred CccccccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcE
Q 032360 1 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPST 80 (142)
Q Consensus 1 m~~~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt 80 (142)
||=.+.+++ +.++++.+.+ .+++++|+||++||++|+.+.|.++++++++.+.+.++.+|++..+.++++|+|.++||
T Consensus 1 ~~~~v~~~~-~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 1 MSDKIIHLT-DDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred CCCcceeeC-hhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 455566775 4678876653 57899999999999999999999999999997667788899999999999999999999
Q ss_pred EEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 81 ~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+++|.+|+.+....|.. +.+++.+.|++.+
T Consensus 79 ~~~~~~G~~~~~~~G~~----------~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGAL----------SKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCC----------CHHHHHHHHHHhc
Confidence 99998888776665655 7788888888764
No 18
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=1.6e-22 Score=135.44 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=82.5
Q ss_pred CChHHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 9 HSGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 9 ~s~~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
.+.+++++.+. .+.+++++|+|||+||++|+.+.|.+.++++++++ .+.++.||++++++++++++|.++||+++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 35667765443 34689999999999999999999999999999865 46788899999999999999999999999998
Q ss_pred CcEEEEEeccccccccccccCChhHHHHHHHH
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
|+.+....|.. +.++|.++|++
T Consensus 89 g~~~~~~~G~~----------~~~~l~~~i~~ 110 (111)
T cd02963 89 GQVTFYHDSSF----------TKQHVVDFVRK 110 (111)
T ss_pred CEEEEEecCCC----------CHHHHHHHHhc
Confidence 87655444444 77888888765
No 19
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.89 E-value=2.9e-22 Score=132.01 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=73.7
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecC-c
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN-K 88 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g-~ 88 (142)
+..+|++.+.+ .+++++|.|||+||++|+.+.|.++++++++.+.+.++.||++++++++++++|.++||+++|.+| +
T Consensus 7 ~~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 85 (104)
T cd03004 7 TPEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNAS 85 (104)
T ss_pred CHHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCC
Confidence 46689888764 567999999999999999999999999999876778889999999999999999999999999888 5
Q ss_pred EEEEEecc
Q 032360 89 HIMIDLGT 96 (142)
Q Consensus 89 ~v~~~~~~ 96 (142)
.+ ..+.|
T Consensus 86 ~~-~~~~G 92 (104)
T cd03004 86 KY-HSYNG 92 (104)
T ss_pred Cc-eEccC
Confidence 54 34443
No 20
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=6.4e-22 Score=139.28 Aligned_cols=105 Identities=12% Similarity=0.219 Sum_probs=87.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcccHHhhccccC------CcEEEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYD------PSTVMF 83 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~~~~~~~v~~------~Pt~~~ 83 (142)
.+++++.+..+.+++++|+|||+||+||+++.|.++++++++++ .+.++.||++++++++++|+|.+ +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 56798888766678999999999999999999999999998864 47888999999999999999988 999999
Q ss_pred EecCcEEEEEec-cccccccccccCChhHHHHH
Q 032360 84 FFRNKHIMIDLG-TGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 84 ~~~g~~v~~~~~-~~~~~~i~~~~~~~~el~~~ 115 (142)
|++|+.+.+..| ...+.++.+...+.+++...
T Consensus 115 f~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 115 FQGGKEVARRPYYNDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred EECCEEEEEEeccccCccccccccccHHHHHHh
Confidence 999999977666 22234466666677666554
No 21
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=3.1e-22 Score=131.40 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=72.3
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+..+|++.+. .+++++|.|||+||++|+++.|.+.++++++++.+.++.||++++++++++++|.++||+++|++|+.
T Consensus 7 ~~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 7 DRGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred CHhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCC
Confidence 3668988874 46899999999999999999999999999998777788899999999999999999999999988876
Q ss_pred EEE
Q 032360 90 IMI 92 (142)
Q Consensus 90 v~~ 92 (142)
+..
T Consensus 85 ~~~ 87 (101)
T cd03003 85 PEK 87 (101)
T ss_pred ccc
Confidence 543
No 22
>PRK10996 thioredoxin 2; Provisional
Probab=99.88 E-value=1.4e-21 Score=135.76 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=85.4
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+..++++.+. ++++++|+|||+||++|+.+.|.|.++++++.+.+.++.+|.+++++++++|+|.++||+++|++|+.
T Consensus 41 ~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 41 TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 5678888764 47999999999999999999999999999887777888899999999999999999999999998887
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+....|.. +.+++.++|+++
T Consensus 119 v~~~~G~~----------~~e~l~~~l~~~ 138 (139)
T PRK10996 119 VDMLNGAV----------PKAPFDSWLNEA 138 (139)
T ss_pred EEEEcCCC----------CHHHHHHHHHHh
Confidence 76555544 778899888875
No 23
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.88 E-value=1.3e-21 Score=127.08 Aligned_cols=96 Identities=21% Similarity=0.398 Sum_probs=80.9
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
|.+++++++....+++++|+|||+||++|+.+.|.++++++++...+.++.+|.++.++++++|++.++||+++|.+|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 45788888886657999999999999999999999999999865567888899999999999999999999999988876
Q ss_pred EEEEeccccccccccccCChhHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
+... .|. ++++|.+.|
T Consensus 81 ~~~~-~g~----------~~~~l~~~~ 96 (97)
T cd02984 81 VDRV-SGA----------DPKELAKKV 96 (97)
T ss_pred EEEE-eCC----------CHHHHHHhh
Confidence 6443 444 567776655
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.8e-22 Score=150.80 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=90.4
Q ss_pred cccCCChHHHHHHHHh-cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 5 LPHLHSGWAVDQAILA-EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~-~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
+.++| ..+|++.+.. +..+||+|+||||||+||+.+.|.++++..+|++.+.+.+||+|+++.++.+|+|+++||+..
T Consensus 25 I~dvT-~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDVT-EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceech-HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 34444 5567665554 445699999999999999999999999999999988999999999999999999999999999
Q ss_pred EecCcEEEEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 84 ~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
|++|+.+.-..|.. +.++++++|+++...
T Consensus 104 f~dGqpVdgF~G~q----------Pesqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQGAQ----------PESQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCCCC----------cHHHHHHHHHHhcCh
Confidence 99999995444444 667899999988654
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.88 E-value=1.7e-21 Score=135.77 Aligned_cols=101 Identities=12% Similarity=0.209 Sum_probs=82.7
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc--ccHHhhccccCCcEEEEEe-cC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFF-RN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~-~g 87 (142)
..++++++. .++++||+|||+||++|+.+.|.+.++++++.+.+.|+.||++.. .+++++|+|.++||++||. +|
T Consensus 10 ~~~~~~a~~--~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 10 STPPEVALS--NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred cCCHHHHHh--CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 445666653 589999999999999999999999999999876667777777754 5789999999999999995 56
Q ss_pred cEEEEEeccccccccccccCChhHHHHHHHHHHhhh
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
+.+....|.. +.++|.+.|++++++.
T Consensus 88 ~~v~~~~G~~----------~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEGQSIGLQ----------PKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEEEEeCCC----------CHHHHHHHHHHHHcCC
Confidence 6665555544 7889999999988654
No 26
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=2.2e-21 Score=130.43 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=79.6
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
+..+++..++.+.+. ++++++|+||++||++|+.+.|.+++++++++ .+.++.||.+++++++++|+|.++||+++|
T Consensus 6 v~~i~~~~~~~~~i~--~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 6 YREVSDEKEFFEIVK--SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred eEEeCCHHHHHHHHh--CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 566788889999986 35799999999999999999999999999986 478899999999999999999999999999
Q ss_pred ecCcEEEEEecc
Q 032360 85 FRNKHIMIDLGT 96 (142)
Q Consensus 85 ~~g~~v~~~~~~ 96 (142)
++|+.+.+..|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999988765554
No 27
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.86 E-value=2.4e-21 Score=129.26 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=75.4
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDW--DETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~W--C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
..+|++.+ ..|..++|.|||+| ||+|+.+.|.|.++++++++.+.++.+|++++++++.+|+|.++||+++|++|+
T Consensus 17 ~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 17 AATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred cccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 55788776 35679999999997 999999999999999999877778899999999999999999999999999998
Q ss_pred EEEEEeccc
Q 032360 89 HIMIDLGTG 97 (142)
Q Consensus 89 ~v~~~~~~~ 97 (142)
.+....|..
T Consensus 95 ~v~~~~G~~ 103 (111)
T cd02965 95 YVGVLAGIR 103 (111)
T ss_pred EEEEEeCcc
Confidence 887665654
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=3.5e-21 Score=129.15 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=76.9
Q ss_pred cccCCChHHHHHHHHhcC-CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 5 LPHLHSGWAVDQAILAEE-ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~-~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
+.++++ .+|.+.+.+.+ +++++|+|||+||++|+.+.|.+++++++++ .+.|+.||++++ +++++|+|.++||+++
T Consensus 6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 6 VREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred EEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 345666 78988886432 5899999999999999999999999999986 478889999999 9999999999999999
Q ss_pred EecCcEEEEEecc
Q 032360 84 FFRNKHIMIDLGT 96 (142)
Q Consensus 84 ~~~g~~v~~~~~~ 96 (142)
|++|+.+....|.
T Consensus 83 f~~G~~v~~~~G~ 95 (113)
T cd02957 83 YKNGELIDNIVGF 95 (113)
T ss_pred EECCEEEEEEecH
Confidence 9999988766553
No 29
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=6.5e-21 Score=126.58 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=76.7
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC------CeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN------FAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~------~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
+..+|++.+. .+++++|.|||+||++|+++.|.++++++.+++ .+.++.||++++++++++|+|.++||+.+
T Consensus 7 ~~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~ 84 (108)
T cd02996 7 TSGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKL 84 (108)
T ss_pred CHhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEE
Confidence 4668988774 468999999999999999999999999887532 36777899999999999999999999999
Q ss_pred EecCcEEEEEeccccccccccccCChhHHHHH
Q 032360 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 84 ~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~ 115 (142)
|.+|+.....+.|. ++.++|.++
T Consensus 85 ~~~g~~~~~~~~g~---------~~~~~l~~f 107 (108)
T cd02996 85 FRNGMMMKREYRGQ---------RSVEALAEF 107 (108)
T ss_pred EeCCcCcceecCCC---------CCHHHHHhh
Confidence 99888554444443 266666554
No 30
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=140.18 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=88.8
Q ss_pred ChHHHHHHHHhc---CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 10 SGWAVDQAILAE---EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 s~~~~~~~i~~~---~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
+..+|++.+... .+++++|+|||+||++|+++.|.++++++++++.+.+..+|++++++++++|+|.++||+.+|.+
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 466898877643 25899999999999999999999999999998777788899999999999999999999999998
Q ss_pred CcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
|+.+....|.. +.++|.+++++.++....
T Consensus 116 G~~v~~~~G~~----------s~e~L~~fi~~~~~~~~~ 144 (224)
T PTZ00443 116 GKMYQYEGGDR----------STEKLAAFALGDFKKALG 144 (224)
T ss_pred CEEEEeeCCCC----------CHHHHHHHHHHHHHhhcC
Confidence 87654333333 789999999998865543
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=1.4e-20 Score=123.05 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=77.2
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
+.+++++.+.+ + +++|.|||+||++|+.+.|.+.++++++.+ .+.++.+|++++.++++.|+|.++||+++|.+
T Consensus 6 ~~~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 6 TEDNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CHHHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 35679888853 3 599999999999999999999999999865 46778899999999999999999999999988
Q ss_pred CcEEEEEeccccccccccccCChhHHHHH
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~ 115 (142)
|+.+....|.. +.++|.++
T Consensus 83 g~~~~~~~G~~----------~~~~l~~~ 101 (102)
T cd03005 83 GEKVDKYKGTR----------DLDSLKEF 101 (102)
T ss_pred CCeeeEeeCCC----------CHHHHHhh
Confidence 88765555554 66666554
No 32
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=1.5e-20 Score=122.33 Aligned_cols=88 Identities=16% Similarity=0.274 Sum_probs=77.7
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
+.++++.+++++.+. .+++++|+|||+||++|+.+.|.++++++++. .+.++.+|.+++.+++++|+|.++||+++|
T Consensus 2 v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 567888999998875 57899999999999999999999999999875 477888999999999999999999999999
Q ss_pred ecCcEEEEEec
Q 032360 85 FRNKHIMIDLG 95 (142)
Q Consensus 85 ~~g~~v~~~~~ 95 (142)
++|+.+....|
T Consensus 79 ~~g~~~~~~~G 89 (98)
T PTZ00051 79 KNGSVVDTLLG 89 (98)
T ss_pred eCCeEEEEEeC
Confidence 98888765555
No 33
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.85 E-value=4.1e-20 Score=120.02 Aligned_cols=99 Identities=17% Similarity=0.353 Sum_probs=84.1
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+.+++++.+.. .+++++|.||++||++|+.+.|.+.++++++++.+.++.+|.++++++.++|+|.++||+++|.+|+.
T Consensus 2 ~~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 2 TDANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CHHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 35678888764 46799999999999999999999999998887678889999999999999999999999999988877
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+....|.. +.+++.++|++.
T Consensus 81 ~~~~~g~~----------~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGAL----------PKAALKQLINKN 100 (101)
T ss_pred eeeecCCC----------CHHHHHHHHHhh
Confidence 65444444 778888888764
No 34
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.85 E-value=1.5e-20 Score=124.41 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=70.3
Q ss_pred cCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--cccHHhhccccCCcEEEEE
Q 032360 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 7 ~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~ 84 (142)
+++ ..++++.+.+ .+++++|.|||+||++|+++.|.+.++++++.+.+.++.+|+++ +++++++|+|.++||+++|
T Consensus 4 ~l~-~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 4 ELT-PKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred Ecc-hhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 344 5578888864 57899999999999999999999999999987667778899888 8899999999999999999
Q ss_pred ecCc
Q 032360 85 FRNK 88 (142)
Q Consensus 85 ~~g~ 88 (142)
.+|+
T Consensus 82 ~~~~ 85 (109)
T cd03002 82 RPPK 85 (109)
T ss_pred eCCC
Confidence 8887
No 35
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.85 E-value=3.9e-20 Score=120.74 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
..++..+.+ .+++++|.||++||++|+.+.|.+.++++++.+.+.+..+|.++.++++++++|.++||+++|++|+.+.
T Consensus 3 ~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 3 YALRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred hhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 457777775 6899999999999999999999999999998766778889999999999999999999999998887765
Q ss_pred EEeccccccccccccCChhHHHHHH
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
...|.. +.++|.+.|
T Consensus 82 ~~~g~~----------~~~~~~~~l 96 (97)
T cd02949 82 EISGVK----------MKSEYREFI 96 (97)
T ss_pred EEeCCc----------cHHHHHHhh
Confidence 554544 677777765
No 36
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=2.6e-20 Score=122.07 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=76.6
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
.+++ ..+|++.+. +. ++|+|||+||++|+++.|.++++++.+++ .+.+..+|++++++++++|+|.++||+++|
T Consensus 4 ~~l~-~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 4 VELT-DSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred EEcC-hhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 3454 668887663 44 78999999999999999999999987654 467788999999999999999999999998
Q ss_pred ecCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 85 ~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
.+|+ +....|.. +.++|..+|+
T Consensus 79 ~~g~-~~~~~G~~----------~~~~l~~~i~ 100 (101)
T cd02994 79 KDGV-FRRYQGPR----------DKEDLISFIE 100 (101)
T ss_pred CCCC-EEEecCCC----------CHHHHHHHHh
Confidence 8776 43333433 7777877765
No 37
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.84 E-value=7.2e-20 Score=131.71 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=84.1
Q ss_pred cccCCChHHHHHHHHhc-CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 5 LPHLHSGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~-~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
+.++++..+|.+.+... .+.+|||+|||+||+||+.|.|.|.+++++|+ .+.|+.||++++ +++..|+|.++||+++
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTlll 141 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPALLV 141 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEEEE
Confidence 45677767888887643 24599999999999999999999999999986 588999999988 8999999999999999
Q ss_pred EecCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 84 ~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
|++|+.+....|.... .+.-.+.+.|..+|.
T Consensus 142 yk~G~~v~~~vG~~~~---~g~~f~~~~le~~L~ 172 (175)
T cd02987 142 YKGGELIGNFVRVTED---LGEDFDAEDLESFLV 172 (175)
T ss_pred EECCEEEEEEechHHh---cCCCCCHHHHHHHHH
Confidence 9999988655553311 111125556655554
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.83 E-value=2.6e-20 Score=122.77 Aligned_cols=94 Identities=22% Similarity=0.395 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCC----cccHHhhccccCCcEEEEE
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~ 84 (142)
.++++++. ++++++|.|||+||++|+.+.|.+ .++++.+.+.+.++.+|+++ .++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 45777774 579999999999999999999988 57888776567788899887 5689999999999999999
Q ss_pred e--cCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 85 F--RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 85 ~--~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
. +|+.+.+..|.. +.++|.+.|+
T Consensus 80 ~~~~g~~~~~~~G~~----------~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFL----------TADEFLEALE 104 (104)
T ss_pred CCCCCCCCccccccc----------CHHHHHHHhC
Confidence 8 455554444444 7788877663
No 39
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.83 E-value=1.1e-19 Score=123.53 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=79.9
Q ss_pred hHHHHHHHHhcCC-CEEEEEEeCCCCHHHHHHHHHHH---HHHHHhcCCeEEEEEeCCCc-------------ccHHhhc
Q 032360 11 GWAVDQAILAEEE-RLVVIRFGHDWDETCMQMDEVLS---SVAETIKNFAVIYLVDISEV-------------PDFNTMY 73 (142)
Q Consensus 11 ~~~~~~~i~~~~~-k~vvv~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~~~vd~d~~-------------~~~~~~~ 73 (142)
.+++++++. ++ ++++|+|||+||++|+.+.|.+. ++.+.+.+.+.++.+|+++. .+++.+|
T Consensus 3 ~~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 345666664 57 89999999999999999999885 56666654566777888764 6789999
Q ss_pred cccCCcEEEEEecC--cEEEEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 74 ELYDPSTVMFFFRN--KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 74 ~v~~~Pt~~~~~~g--~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
+|.++||++||.++ +.+....|.. +.++|.+.|+.+..+..+
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~----------~~~~~~~~l~~~~~~~~~ 124 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYL----------PPDEFLAYLEYVQEKAYK 124 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCC----------CHHHHHHHHHHHHhhhhc
Confidence 99999999999765 4444444444 789999999998877654
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=7.2e-20 Score=122.99 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE--EEeccccc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM--IDLGTGNN 99 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~--~~~~~~~~ 99 (142)
.++.++|.|||+||++|+.+.|.++++++++ +.+.+..+|.+++++++++|+|.++||+++|++|+... ...|..
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~-- 97 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP-- 97 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC--
Confidence 4677999999999999999999999999887 45788889999999999999999999999998765442 333433
Q ss_pred cccccccCChhHHHHHHHHHHh
Q 032360 100 NKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 100 ~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+..+|.++|+.++.
T Consensus 98 --------~~~el~~~i~~i~~ 111 (113)
T cd02975 98 --------AGYEFASLIEDIVR 111 (113)
T ss_pred --------chHHHHHHHHHHHh
Confidence 77899999998875
No 41
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.83 E-value=6e-20 Score=119.65 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=82.0
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
+..++++.+. ++++++|.||++||++|+.+.|.++++++.+++ .+.++.+|+++++++.++|+|.++|++.+|.+|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 3567888875 688999999999999999999999999998875 477778999999999999999999999999888
Q ss_pred cEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+......|.. +.++|..+|+++
T Consensus 80 ~~~~~~~g~~----------~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGR----------DLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCC----------CHHHHHHHHHhc
Confidence 8643333333 778888888764
No 42
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=1.1e-19 Score=118.88 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=79.1
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
+..++++.+.. .+++++|.|||+||++|+++.|.+.++++++.+.+.++.+|.+++++++++|+|.++|++++|.+|+.
T Consensus 6 ~~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 84 (103)
T cd03001 6 TDSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKN 84 (103)
T ss_pred CHHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCc
Confidence 46678888764 46789999999999999999999999999987777888899999999999999999999999988844
Q ss_pred EEEEeccccccccccccCChhHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
....+.|. .+.++|.+++
T Consensus 85 ~~~~~~g~---------~~~~~l~~~~ 102 (103)
T cd03001 85 SPQDYQGG---------RTAKAIVSAA 102 (103)
T ss_pred ceeecCCC---------CCHHHHHHHh
Confidence 44444333 1666666543
No 43
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.83 E-value=1.2e-19 Score=118.87 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=77.5
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCC--cccHHhhccccCCcEE
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIK--NFAVIYLVDISE--VPDFNTMYELYDPSTV 81 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~--~~~~~~~~~v~~~Pt~ 81 (142)
.+++ ..++++.+. ++++++|.|||+||++|+++.|.+.++++.+. +.+.+..+|+++ ++++.+.++|.++||+
T Consensus 3 ~~l~-~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 3 VHLT-DEDFRKFLK--KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred EEec-hHhHHHHHh--hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 3454 447888775 45699999999999999999999999998886 345667789988 8999999999999999
Q ss_pred EEEecCcEEEEEeccccccccccccCChhHHHHH
Q 032360 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 82 ~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~ 115 (142)
++|.+|+.+....|.. +.+++.++
T Consensus 80 ~~~~~g~~~~~~~g~~----------~~~~l~~~ 103 (104)
T cd02997 80 KYFENGKFVEKYEGER----------TAEDIIEF 103 (104)
T ss_pred EEEeCCCeeEEeCCCC----------CHHHHHhh
Confidence 9999887665444444 66666654
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=1.4e-19 Score=119.38 Aligned_cols=94 Identities=13% Similarity=0.239 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
+++++.. ++++++|.|||+||++|+++.|.++++++++++ .+.+..+|+++.++++++|+|.++||+++|.+|
T Consensus 7 ~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKDVR---KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhhc---cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-
Confidence 4566542 367999999999999999999999999998843 366777999999999999999999999999655
Q ss_pred EEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 89 ~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
......|.. +.++|.++++++
T Consensus 83 ~~~~~~G~~----------~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAYNYRGPR----------TKDDIVEFANRV 103 (104)
T ss_pred CceeecCCC----------CHHHHHHHHHhh
Confidence 333333433 778888887764
No 45
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.9e-19 Score=119.95 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=70.2
Q ss_pred hHHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCC-cccHHh-hccccCCcEEEEEec
Q 032360 11 GWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDISE-VPDFNT-MYELYDPSTVMFFFR 86 (142)
Q Consensus 11 ~~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~-~~~~~~-~~~v~~~Pt~~~~~~ 86 (142)
.++++.++. .+.+++++|.|||+||++|+++.|.+.++++.+.+. +.+..||++. ...++. .+++.++||+++|.+
T Consensus 8 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~ 87 (109)
T cd02993 8 RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPK 87 (109)
T ss_pred HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcC
Confidence 457887764 245799999999999999999999999999998753 6777899997 566776 599999999999987
Q ss_pred CcEEEEEecc
Q 032360 87 NKHIMIDLGT 96 (142)
Q Consensus 87 g~~v~~~~~~ 96 (142)
|+.....+.|
T Consensus 88 ~~~~~~~y~g 97 (109)
T cd02993 88 NSRQPIKYPS 97 (109)
T ss_pred CCCCceeccC
Confidence 7655455554
No 46
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.81 E-value=2.8e-19 Score=120.98 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=74.6
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeC-------CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC-------cccHHh
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGH-------DWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-------VPDFNT 71 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A-------~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~-------~~~~~~ 71 (142)
..+++..+|.+.+...++++++|+||| +|||||+.+.|.++++++++++.+.++.||+++ +.+++.
T Consensus 4 ~~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 4 TAVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 356778889988886668999999999 999999999999999999987667888899976 458999
Q ss_pred hcccc-CCcEEEEEecCcEEE
Q 032360 72 MYELY-DPSTVMFFFRNKHIM 91 (142)
Q Consensus 72 ~~~v~-~~Pt~~~~~~g~~v~ 91 (142)
.++|. ++||+++|++|+++.
T Consensus 84 ~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 84 DPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred ccCcccCCCEEEEEcCCceec
Confidence 99998 999999998776653
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.80 E-value=1.3e-18 Score=118.48 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=74.4
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-----------cHHhhcc----
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----------DFNTMYE---- 74 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-----------~~~~~~~---- 74 (142)
+..++.+.+. +++.++|+||++|||+|+++.|.|.+++++. ...++.||++.++ ++.+.|+
T Consensus 12 t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 12 TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 4567877775 4678999999999999999999999999873 3568888888543 4455655
Q ss_pred ccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 75 LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 75 v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
|.++||+++|++|+.+....|+. .+.++|.+++.
T Consensus 88 i~~~PT~v~~k~Gk~v~~~~G~~---------~~~~~l~~~~~ 121 (122)
T TIGR01295 88 FMGTPTFVHITDGKQVSVRCGSS---------TTAQELQDIAA 121 (122)
T ss_pred CCCCCEEEEEeCCeEEEEEeCCC---------CCHHHHHHHhh
Confidence 55699999999999998776643 26788887653
No 48
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.80 E-value=5.1e-19 Score=115.80 Aligned_cols=95 Identities=19% Similarity=0.330 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCC-cccHHhhccccCCcEEEEEecC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIK--NFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..++++.+.+ .+++++|.|||+||++|+.+.|.+.++++.++ +.+.++.+|.++ +++++++|+|.++|++++|.+|
T Consensus 7 ~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 7 DSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred hhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 4578777653 46799999999999999999999999999886 346777899999 9999999999999999999877
Q ss_pred cEEEEEeccccccccccccCChhHHHHH
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDI 115 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~ 115 (142)
+.....+.|. .+.++|.++
T Consensus 86 ~~~~~~~~g~---------~~~~~l~~~ 104 (105)
T cd02998 86 STEPVKYEGG---------RDLEDLVKF 104 (105)
T ss_pred CCCccccCCc---------cCHHHHHhh
Confidence 5443444333 166666654
No 49
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.79 E-value=8.9e-19 Score=114.59 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=66.2
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
+.++++.+.+ .+++++|+|||+||++|+.+.|.+.++++.+++ .+.++.+|++++ +++..+++.++||+++|.+|+
T Consensus 7 ~~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 7 GKNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCC
Confidence 5578888765 468999999999999999999999999998865 367778999987 578889999999999998887
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.78 E-value=3.5e-18 Score=138.32 Aligned_cols=104 Identities=14% Similarity=0.240 Sum_probs=82.6
Q ss_pred cCCChHHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCCcc-cHH-hhccccCCcEEE
Q 032360 7 HLHSGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDISEVP-DFN-TMYELYDPSTVM 82 (142)
Q Consensus 7 ~l~s~~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~-~~~-~~~~v~~~Pt~~ 82 (142)
+|+ ..+|++.+. .+.++++||+|||+||++|+.|.|.|+++++++.+. +.++.||+|.++ +++ +.|+|.++||++
T Consensus 355 ~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 355 SLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL 433 (463)
T ss_pred ECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEE
Confidence 344 457888875 567899999999999999999999999999998653 678889998764 454 689999999999
Q ss_pred EEecCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 83 ~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+|++|+.....+.+.. .+.+.|..+|+.+
T Consensus 434 ~Fk~g~~~~~~Y~~g~--------R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 434 FFPKHSSRPIKYPSEK--------RDVDSLMSFVNLL 462 (463)
T ss_pred EEECCCCCceeCCCCC--------CCHHHHHHHHHhh
Confidence 9998875445564321 2888898888765
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=4.5e-18 Score=109.66 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~--~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
..++.+.+.+ +++++|.||++||++|+.+.|.+.++++.+ .+.+.++.+|++++..+.+.|+|.++||+++|.+|+
T Consensus 5 ~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 5 DDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 4578888763 459999999999999999999999999988 456788889999999999999999999999998774
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.77 E-value=6.2e-18 Score=123.29 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=77.4
Q ss_pred ccCCChHHHHHHHHh-cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 6 PHLHSGWAVDQAILA-EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~-~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
.+++ ..+|.+.+.. ..+.+|||+|||+||++|+.|.|.|.+|+++|+ .+.|+.||++.. ...|++.++||+++|
T Consensus 85 ~eis-~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTlliy 159 (192)
T cd02988 85 YEIS-KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTILVY 159 (192)
T ss_pred EEeC-HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEEEE
Confidence 3444 4566655543 335699999999999999999999999999986 588999999864 688999999999999
Q ss_pred ecCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 85 ~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
++|+.+....|... +.|.-.+.+.|...|.
T Consensus 160 k~G~~v~~ivG~~~---~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 160 RNGDIVKQFIGLLE---FGGMNTTMEDLEWLLV 189 (192)
T ss_pred ECCEEEEEEeCchh---hCCCCCCHHHHHHHHH
Confidence 99998866655321 1110115566665554
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.76 E-value=8.2e-18 Score=123.45 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 8 l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..+.+++++.+..+ .+.++++|||+||++|++|.|.+.+++++|+ .+.|+.||++ |+|.++|||+||++|
T Consensus 3 ~~~~ee~~~~i~~~-~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 3 FIKKEEKDKLIESN-TGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCCHHHHHHHHhcC-CCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECC
Confidence 35678888887632 2578999999999999999999999999997 5889999988 999999999999999
Q ss_pred cEEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+.+.+ +.|. ++.++...|.++.
T Consensus 73 ~~i~r-~~G~----------~~~~~~~~~~~~~ 94 (204)
T PTZ00062 73 QLINS-LEGC----------NTSTLVSFIRGWA 94 (204)
T ss_pred EEEee-eeCC----------CHHHHHHHHHHHc
Confidence 98864 4455 5666666665543
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.76 E-value=1.2e-17 Score=112.34 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=66.2
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCC--CcccHHhhccccCCcEEEEE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDIS--EVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~ 84 (142)
+..+|++.+... +++++|+|||+||++|+.+.|.++++++++++ .+.+..+|++ ++++++++|+|.++||+.+|
T Consensus 7 ~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf 85 (114)
T cd02992 7 DAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYF 85 (114)
T ss_pred CHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEE
Confidence 366788888754 58999999999999999999999999998753 3566668864 57789999999999999999
Q ss_pred ecCcE
Q 032360 85 FRNKH 89 (142)
Q Consensus 85 ~~g~~ 89 (142)
.+|..
T Consensus 86 ~~~~~ 90 (114)
T cd02992 86 PPFSK 90 (114)
T ss_pred CCCCc
Confidence 88773
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=1.2e-17 Score=135.14 Aligned_cols=102 Identities=14% Similarity=0.250 Sum_probs=83.1
Q ss_pred ChHHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCC-CcccHHh-hccccCCcEEEEEe
Q 032360 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDIS-EVPDFNT-MYELYDPSTVMFFF 85 (142)
Q Consensus 10 s~~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d-~~~~~~~-~~~v~~~Pt~~~~~ 85 (142)
+..++++.+. .+.+++++|+|||+||++|++|.|.+.++++++.+ .+.|+.+|++ .+.+++. .|+|.++||+++|.
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 3567887764 45689999999999999999999999999999865 3778889999 7778886 59999999999998
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+|......+.+.. .+.+.|..+|+++
T Consensus 431 ~g~~~~v~Y~~~~--------R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSEK--------RDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCCC--------cCHHHHHHHHHHh
Confidence 8876555664321 2788899888875
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.75 E-value=2.7e-17 Score=104.08 Aligned_cols=91 Identities=24% Similarity=0.405 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEE
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~ 92 (142)
++++++.. +++++|.||++||++|+.+.|.+.++.+. .+.+.++.+|.++++++.+.|++.++|++++|.+|+.+..
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence 35666653 48999999999999999999999999887 4467888999999999999999999999999998887765
Q ss_pred EeccccccccccccCChhHHHHHH
Q 032360 93 DLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
..|.. +.++|.++|
T Consensus 79 ~~g~~----------~~~~l~~~i 92 (93)
T cd02947 79 VVGAD----------PKEELEEFL 92 (93)
T ss_pred EecCC----------CHHHHHHHh
Confidence 55544 567777665
No 57
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.74 E-value=8.5e-18 Score=113.62 Aligned_cols=93 Identities=9% Similarity=0.138 Sum_probs=64.8
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-cHHhhccccC--CcEEEEEe-cCcEEEEEecc
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYELYD--PSTVMFFF-RNKHIMIDLGT 96 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~~~~~~~v~~--~Pt~~~~~-~g~~v~~~~~~ 96 (142)
.++++|+|+|||+||++|+.|.|.+.+..........|+.+|++..+ ...+.|++.+ +||++||. +|+.+.+..+.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~ 96 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINK 96 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccC
Confidence 46899999999999999999999999976654333456667777664 4567889986 99999996 66665532221
Q ss_pred ccccccccccCChhHHHHHHHHHH
Q 032360 97 GNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 97 ~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
... .+.+.|.+.|..++
T Consensus 97 ~~~-------~~~~~f~~~~~~~~ 113 (117)
T cd02959 97 KGN-------PNYKYFYSSAAQVT 113 (117)
T ss_pred CCC-------ccccccCCCHHHHH
Confidence 111 14555555555554
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=2.6e-17 Score=133.71 Aligned_cols=101 Identities=12% Similarity=0.227 Sum_probs=85.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
+.++++.+. +.+++++|.|||+||++|+.+.|.++++++.+.+ .+.++.+|.+.+...++.+++.++||+++|.+|+
T Consensus 364 ~~~f~~~v~-~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 364 GNTFEEIVF-KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred ccchHHHHh-cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCC
Confidence 567887765 3579999999999999999999999999988764 3667779999999999999999999999999888
Q ss_pred EEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 89 ~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
++...+.|. .+.+++.++|+++..
T Consensus 443 ~~~~~~~G~---------~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 443 RTPIPYEGE---------RTVEGFKEFVNKHAT 466 (477)
T ss_pred cceeEecCc---------CCHHHHHHHHHHcCC
Confidence 775554443 288999999998764
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=1.1e-16 Score=128.99 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=81.4
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
+..++++++. ++++++|.|||+||++|+++.|.+.++++.+.+ .+.++.||++++++++++|+|.++||+.+|.+
T Consensus 7 ~~~~~~~~i~--~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 7 TKDNFDDFIK--SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CHHHHHHHHh--cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 4668888885 468999999999999999999999999887753 26788899999999999999999999999998
Q ss_pred CcE-EEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 87 NKH-IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 87 g~~-v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
|+. +....|.. +.++|.++|.+.+
T Consensus 85 g~~~~~~~~g~~----------~~~~l~~~i~~~~ 109 (462)
T TIGR01130 85 GEDSVSDYNGPR----------DADGIVKYMKKQS 109 (462)
T ss_pred CccceeEecCCC----------CHHHHHHHHHHhc
Confidence 887 54444544 6666777666654
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=1.7e-16 Score=128.83 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=82.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc---CCeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~---~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..++++.+. +++.++|.|||+||++|+++.|.+.++++.+. ..+.++.||++++.+++++|+|.++||+.+|.+|
T Consensus 39 ~~~f~~~i~--~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 39 DSTFDKFIT--ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKG 116 (477)
T ss_pred hhhHHHHHh--cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECC
Confidence 557888775 46899999999999999999999999987764 2477888999999999999999999999999988
Q ss_pred cEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+.+ ...|+. +.++|.++++++..
T Consensus 117 ~~~-~y~g~~----------~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 117 NPV-NYSGGR----------TADGIVSWIKKLTG 139 (477)
T ss_pred ceE-EecCCC----------CHHHHHHHHHHhhC
Confidence 876 444444 78888888887654
No 61
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=8.3e-17 Score=105.42 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=74.0
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhcccc--CCcEEEEEec--CcEEEEEecccc
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFFR--NKHIMIDLGTGN 98 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~~~--g~~v~~~~~~~~ 98 (142)
++++++.|+++||++|+.+.|.+.++++++.+.+.|+.||+++++++++.|++. ++|+++++.+ |++.... ++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~-~~~- 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP-EEE- 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCC-ccc-
Confidence 689999999999999999999999999999878899999999999999999999 9999999987 5444322 111
Q ss_pred ccccccccCChhHHHHHHHHH
Q 032360 99 NNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 99 ~~~i~~~~~~~~el~~~i~~~ 119 (142)
.+.+++.++|+++
T Consensus 90 --------~~~~~l~~fi~~~ 102 (103)
T cd02982 90 --------LTAESLEEFVEDF 102 (103)
T ss_pred --------cCHHHHHHHHHhh
Confidence 2678888888764
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.70 E-value=2.3e-16 Score=99.27 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=66.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEeccccccccccc
Q 032360 26 VVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA 105 (142)
Q Consensus 26 vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~ 105 (142)
.+.-||++||++|+.+.|.+++++++++..+.+..||.++.++++++|++.++||+++ +|+. ...|..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~-------- 69 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAP-------- 69 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCC--------
Confidence 3678999999999999999999999887667778899999999999999999999864 5542 334444
Q ss_pred cCChhHHHHHHHHH
Q 032360 106 LKDKQEFIDIVETV 119 (142)
Q Consensus 106 ~~~~~el~~~i~~~ 119 (142)
+++++.+.|++.
T Consensus 70 --~~~~l~~~l~~~ 81 (82)
T TIGR00411 70 --TKEELVEAIKKR 81 (82)
T ss_pred --CHHHHHHHHHhh
Confidence 788888888764
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=3.6e-16 Score=115.71 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=72.4
Q ss_pred CCEEEEEEeC---CCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE-EEeccc
Q 032360 23 ERLVVIRFGH---DWDETCMQMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM-IDLGTG 97 (142)
Q Consensus 23 ~k~vvv~F~A---~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~-~~~~~~ 97 (142)
+...++.|++ +||++|+.+.|.++++++++++. +.++.+|.+++++++++|+|.++||+++|++|+.+. +..|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455666777 99999999999999999988531 334557777999999999999999999999998874 444544
Q ss_pred cccccccccCChhHHHHHHHHHHhhh
Q 032360 98 NNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 98 ~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
+.++|.++|+.++..+
T Consensus 99 ----------~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 99 ----------AGYEFAALIEDIVRVS 114 (215)
T ss_pred ----------CHHHHHHHHHHHHHhc
Confidence 7788989998886443
No 64
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-16 Score=129.59 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=79.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..+|++.|. .+..++|.||||||++|++++|.+++.++.+.. .+..+.||++++.+++.+|+|+++||+.+|++|
T Consensus 32 ~dnf~~~i~--~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG 109 (493)
T KOG0190|consen 32 KDNFKETIN--GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNG 109 (493)
T ss_pred cccHHHHhc--cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecC
Confidence 446888886 468999999999999999999999999998754 356778999999999999999999999999999
Q ss_pred cEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 88 ~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+. ...+.|. ++.+.+..++.+.
T Consensus 110 ~~-~~~Y~G~---------r~adgIv~wl~kq 131 (493)
T KOG0190|consen 110 RS-AQDYNGP---------READGIVKWLKKQ 131 (493)
T ss_pred Cc-ceeccCc---------ccHHHHHHHHHhc
Confidence 97 3444443 1556666666553
No 65
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.68 E-value=4e-16 Score=129.90 Aligned_cols=102 Identities=18% Similarity=0.321 Sum_probs=79.6
Q ss_pred cCCChHHHHHHHHh--cCCCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCc----ccHHhhccccC
Q 032360 7 HLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIYLVDISEV----PDFNTMYELYD 77 (142)
Q Consensus 7 ~l~s~~~~~~~i~~--~~~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~----~~~~~~~~v~~ 77 (142)
.+++.+++++.+.. .+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.+|++++ +++.++|++.+
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 45677888887754 3579999999999999999999875 66777776 467778998754 57889999999
Q ss_pred CcEEEEEe-cCcEE--EEEeccccccccccccCChhHHHHHHHHH
Q 032360 78 PSTVMFFF-RNKHI--MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 78 ~Pt~~~~~-~g~~v--~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+||+++|+ +|+.+ .+..|.. ++++|.+.|+++
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~----------~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFM----------DAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECCCCCCcccccccCCC----------CHHHHHHHHHHh
Confidence 99999996 55554 2233433 889999998875
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.68 E-value=1.1e-15 Score=110.73 Aligned_cols=90 Identities=8% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-----------------------cHHhhccccCC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----------------------DFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-----------------------~~~~~~~v~~~ 78 (142)
.|++++|+|||+||++|+.+.|.+.++.++ .+.++.|+.++.+ .+...|++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 589999999999999999999999998753 3556667654432 23447889999
Q ss_pred cEEEEEe-cCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhh
Q 032360 79 STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
Q Consensus 79 Pt~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~ 124 (142)
|+.++++ +|+.+....|.. +.+++.+.|+.+++...
T Consensus 144 P~t~vid~~G~i~~~~~G~~----------~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDL----------NPRVWESEIKPLWEKYS 180 (185)
T ss_pred CeEEEECCCceEEEEEecCC----------CHHHHHHHHHHHHHHHH
Confidence 9887776 454454455544 78899999999886654
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.67 E-value=1.1e-15 Score=116.84 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=72.9
Q ss_pred HHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC-----------cccHHhhccccCCcEEEEE
Q 032360 16 QAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-----------VPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 16 ~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~-----------~~~~~~~~~v~~~Pt~~~~ 84 (142)
..+.+..++++||+|||+||++|+.+.|.|.+++++++ +.++.|++|. +..++++|+|.++||++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 34445568999999999999999999999999999985 4555566654 3468899999999999999
Q ss_pred ec-CcEEEE-EeccccccccccccCChhHHHHHHHHHHh
Q 032360 85 FR-NKHIMI-DLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 85 ~~-g~~v~~-~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
++ |+.+.. ..|.. +.++|.+.|..+..
T Consensus 237 ~~~~~~v~~v~~G~~----------s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 237 DPDPNQFTPIGFGVM----------SADELVDRILLAAH 265 (271)
T ss_pred ECCCCEEEEEEeCCC----------CHHHHHHHHHHHhc
Confidence 86 565533 33444 78888888877644
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.66 E-value=9.7e-16 Score=108.05 Aligned_cols=85 Identities=13% Similarity=0.256 Sum_probs=61.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc------------ccHH-hhc---cccCCcEEEEEec
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV------------PDFN-TMY---ELYDPSTVMFFFR 86 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~------------~~~~-~~~---~v~~~Pt~~~~~~ 86 (142)
++..+|+|||+||+||+++.|.+++++++++ +.++.|+.|+. .+.. ..| ++.++||.++++.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4677999999999999999999999999884 34444555432 2222 345 7899999999965
Q ss_pred -CcEEE-EEeccccccccccccCChhHHHHHHHHH
Q 032360 87 -NKHIM-IDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 87 -g~~v~-~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
|+.+. ...|.. +.+++.+.|+++
T Consensus 128 ~G~~i~~~~~G~~----------s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAV----------DEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeeccc----------CHHHHHHHHHHh
Confidence 45433 345555 778888888765
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.65 E-value=3.4e-15 Score=101.85 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=60.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCcccHHhh--------ccccCCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEV-L--SSVAETIKNFAVIYLVDISEVPDFNTM--------YELYDPS 79 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~-l--~~l~~~~~~~~~~~~vd~d~~~~~~~~--------~~v~~~P 79 (142)
.+.++++. .++|+|+|+|+|+||++|+.|.+. + .++.+....+.+++.+|.++.+++++. |++.++|
T Consensus 5 ~eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 5 EEAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 34455554 468999999999999999999874 3 246655544567778999998887653 5889999
Q ss_pred EEEEEec-CcEEEEE
Q 032360 80 TVMFFFR-NKHIMID 93 (142)
Q Consensus 80 t~~~~~~-g~~v~~~ 93 (142)
|++|+.. |+.+...
T Consensus 83 t~vfl~~~G~~~~~~ 97 (124)
T cd02955 83 LNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEECCCCCEEeee
Confidence 9999965 5555433
No 70
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.65 E-value=1.4e-15 Score=106.36 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=55.5
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--------CeEEEEEeCCCcc-------------------------
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--------FAVIYLVDISEVP------------------------- 67 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--------~~~~~~vd~d~~~------------------------- 67 (142)
.+||+++|+|||+|||||+++.|.|.++++++.+ .+.++.|+.|+..
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 4689999999999999999999999998876532 3566667766421
Q ss_pred cHHhhccccCCcEEEEEecCcEEE
Q 032360 68 DFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
.+++.|++.++||.+++...+.+.
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEE
Confidence 356678899999999997666553
No 71
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.3e-16 Score=126.82 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=76.3
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
+.++++.+. +.+|-|+|.|||||||+|++++|++++|++.|++ ++++.++|.+.|.- ....+.+.||+.+|..|.
T Consensus 373 gknfd~iv~-de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 373 GKNFDDIVL-DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILFFPAGH 449 (493)
T ss_pred ecCHHHHhh-ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEEecCCC
Confidence 457887776 4689999999999999999999999999999976 46778899999863 344566799999998776
Q ss_pred EE-EEEeccccccccccccCChhHHHHHHHHH
Q 032360 89 HI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 89 ~v-~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+. ++.++|. ++.+.|..+|++.
T Consensus 450 k~~pv~y~g~---------R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 450 KSNPVIYNGD---------RTLEDLKKFIKKS 472 (493)
T ss_pred CCCCcccCCC---------cchHHHHhhhccC
Confidence 43 4555554 2677777777654
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=1.4e-15 Score=122.45 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=80.8
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
+.++++.+.+ .+++++|.|||+||++|+.+.|.++++++.+.+ .+.++.+|++.+. +.. +++.++||+.+|.+|
T Consensus 353 ~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 353 GKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred CcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 4567777654 579999999999999999999999999999876 5678889999875 444 999999999999888
Q ss_pred cEE-EEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 88 KHI-MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 88 ~~v-~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
+.. +..+.|. .+.+++.++|++......+
T Consensus 430 ~~~~~~~~~g~---------~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 430 KKSEPVPYDGD---------RTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CCcCceEecCc---------CCHHHHHHHHHhcCCCCCc
Confidence 763 3333332 2788899998887654433
No 73
>PHA02125 thioredoxin-like protein
Probab=99.63 E-value=3.3e-15 Score=93.26 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=49.3
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEec
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLG 95 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~ 95 (142)
++.|||+||++|+.+.|.|.++. ..++.||.+++++++++|+|.++||++ +|+.+....|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G 61 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTG 61 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeC
Confidence 78999999999999999997652 346779999999999999999999986 5655543333
No 74
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.63 E-value=4e-15 Score=122.08 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEE----------------------------eCCCcccHHhh
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLV----------------------------DISEVPDFNTM 72 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~v----------------------------d~d~~~~~~~~ 72 (142)
+||+|||+|||+||+||+.+.|.|++++++++. .+.++.| +.|.+.++++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 689999999999999999999999999998862 3333332 33455678899
Q ss_pred ccccCCcEEEEEe-cCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 73 YELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 73 ~~v~~~Pt~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
|+|.++||++++. +|+.+....|.. +.++|.++|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~----------~~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSI----------SEAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCC----------CHHHHHHHHH
Confidence 9999999998775 555555556655 7788888887
No 75
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.63 E-value=2.2e-15 Score=101.41 Aligned_cols=94 Identities=11% Similarity=0.164 Sum_probs=72.5
Q ss_pred hHHHHHHHHhcCCCEEEEEEeC--CCCH---HHHHHHHHHHHHHHHhcCCeEEEEEeC-----CCcccHHhhcccc--CC
Q 032360 11 GWAVDQAILAEEERLVVIRFGH--DWDE---TCMQMDEVLSSVAETIKNFAVIYLVDI-----SEVPDFNTMYELY--DP 78 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A--~WC~---~C~~~~p~l~~l~~~~~~~~~~~~vd~-----d~~~~~~~~~~v~--~~ 78 (142)
..+|++.+. +++.+||.||| |||+ +|+.++|.+.+.+. .+.+..||+ .++.+++++|+|. ++
T Consensus 8 ~~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 8 TVTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred hhhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 557998885 46889999999 9999 88888888876543 367778999 4578899999999 99
Q ss_pred cEEEEEecCc-EEEEEeccccccccccccCChhHHHHHHHH
Q 032360 79 STVMFFFRNK-HIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 79 Pt~~~~~~g~-~v~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
||+.+|++|+ ..+..+.|.+ ++.+.|..+|.+
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~--------r~~~~lv~~v~~ 114 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGAD--------VTVDALQRFLKG 114 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCc--------ccHHHHHHHHHh
Confidence 9999999885 2334444421 177888887765
No 76
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.62 E-value=5.6e-15 Score=95.47 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=54.8
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCcc-------------------------cHHhhccc
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIK--NFAVIYLVDISEVP-------------------------DFNTMYEL 75 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~-------------------------~~~~~~~v 75 (142)
||+++|+|||+||++|+.+.|.+.++.++++ +.+.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 56777777766531 36778899
Q ss_pred cCCcEEEEEecCcEE
Q 032360 76 YDPSTVMFFFRNKHI 90 (142)
Q Consensus 76 ~~~Pt~~~~~~g~~v 90 (142)
.++|+++++.+++.|
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999876653
No 77
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.60 E-value=5.9e-15 Score=101.22 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcc-------------------------cHHhhc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVP-------------------------DFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~-------------------------~~~~~~ 73 (142)
+||+++|+|||+||++|+.+.|.++++++++.+ .+.++.|+.+..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 689999999999999999999999999888764 3455556655432 456679
Q ss_pred cccCCcEEEEEecCcEE
Q 032360 74 ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 74 ~v~~~Pt~~~~~~g~~v 90 (142)
+|.++|+++++.+++++
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 99999999999755555
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.60 E-value=1.3e-14 Score=107.45 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=68.1
Q ss_pred HHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEecc
Q 032360 17 AILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGT 96 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~ 96 (142)
.+....+..+++.|||+||++|+.+.|.+++++.+.+ .+.+..+|.+++++++++|+|.++||++++.+|.. ..|.
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~ 202 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGA 202 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECC
Confidence 3333333345555999999999999999999998753 57777899999999999999999999998876653 3344
Q ss_pred ccccccccccCChhHHHHHHHH
Q 032360 97 GNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 97 ~~~~~i~~~~~~~~el~~~i~~ 118 (142)
. +.++|.+.|+.
T Consensus 203 ~----------~~~~l~~~l~~ 214 (215)
T TIGR02187 203 Y----------PEEQFLEYILS 214 (215)
T ss_pred C----------CHHHHHHHHHh
Confidence 4 66788877754
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.59 E-value=9.5e-15 Score=99.79 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=54.7
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCc------------------------ccHHhhcc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEV------------------------PDFNTMYE 74 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~------------------------~~~~~~~~ 74 (142)
.|++++|+|||+||++|+.+.|.+.++.+++.+ .+.++.|+.|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 589999999999999999999999999888753 344555665533 34677899
Q ss_pred ccCCcEEEEEecCcEE
Q 032360 75 LYDPSTVMFFFRNKHI 90 (142)
Q Consensus 75 v~~~Pt~~~~~~g~~v 90 (142)
|.++|+++++..++++
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 9999999999755544
No 80
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.59 E-value=1.7e-14 Score=97.99 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred ccccccCCC-hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe------------------
Q 032360 2 SYLLPHLHS-GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVD------------------ 62 (142)
Q Consensus 2 ~~~~~~l~s-~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd------------------ 62 (142)
.|.++.+.. ...+... ..+|++++|+|||+||++|+.+.|.++++.+++. +.++.|+
T Consensus 5 ~f~~~~~~g~~~~~~~~--~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 5 AFSLPALPGPDKTLTSA--DLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNP 80 (127)
T ss_pred CcccccccCCCccccHH--HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCC
Confidence 456666654 2334332 2358999999999999999999999999988753 4444444
Q ss_pred -----CCCcccHHhhccccCCcEEEEEec-CcEEEEEeccc
Q 032360 63 -----ISEVPDFNTMYELYDPSTVMFFFR-NKHIMIDLGTG 97 (142)
Q Consensus 63 -----~d~~~~~~~~~~v~~~Pt~~~~~~-g~~v~~~~~~~ 97 (142)
.|...++++.|++.++|+.+++.+ |+.+....|..
T Consensus 81 ~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred CceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccC
Confidence 344556788899999998777764 44444444444
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.58 E-value=6.1e-15 Score=97.95 Aligned_cols=86 Identities=17% Similarity=0.335 Sum_probs=59.9
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHH---HHHhcCCeEEEEEeCCCc--------------------ccHHhhccccC
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSV---AETIKNFAVIYLVDISEV--------------------PDFNTMYELYD 77 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l---~~~~~~~~~~~~vd~d~~--------------------~~~~~~~~v~~ 77 (142)
.+++++++.||++||++|+.+.+.+.+. ...+.....++.++++.. .++++.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999864 333333455666776643 35888999999
Q ss_pred CcEEEEEe-cCcEEEEEeccccccccccccCChhHHHHHH
Q 032360 78 PSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 78 ~Pt~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
+||++++. +|+.+....|.. ++++|.+.|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~----------~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYL----------SPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS------------HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCC----------CHHHHHhhC
Confidence 99999986 566665555544 888888764
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.58 E-value=3.9e-14 Score=101.53 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeC-----------------------CCcccHHhhccccCC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDI-----------------------SEVPDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~-----------------------d~~~~~~~~~~v~~~ 78 (142)
++++++|+|||+||++|+.+.|.++++.++ .+.++.|+. |...++.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 579999999999999999999999998764 244444543 333456778899999
Q ss_pred cEEEEEe-cCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 79 STVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 79 Pt~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
|+.+++. +|+.+....|.. +.+++.+.|++++.
T Consensus 139 P~~~~id~~G~i~~~~~G~~----------~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPL----------NNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccC----------CHHHHHHHHHHHhh
Confidence 9877775 455454445544 78899998888763
No 83
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.57 E-value=2.1e-14 Score=89.94 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=48.1
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.|.|||+||++|+.+.|.+++++++++..+.++.+| + .+.+.+|++.++||+++ +|+.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE
Confidence 388999999999999999999999987555665566 3 33477899999999877 77666
No 84
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.56 E-value=3.5e-14 Score=95.66 Aligned_cols=97 Identities=9% Similarity=0.105 Sum_probs=67.6
Q ss_pred cccccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeC-------------------
Q 032360 3 YLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDI------------------- 63 (142)
Q Consensus 3 ~~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~------------------- 63 (142)
|.++++.. ..+.... ..+++++|+||++||++|+.+.|.+.++++++. +..+.+|.
T Consensus 3 f~l~~~~g-~~~~~~~--~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 3 FTATTLDG-EQFDLES--LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred ceeecCCC-CEeeHHH--hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 45555553 3343333 246899999999999999999999999987742 22222332
Q ss_pred --CCcccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHH
Q 032360 64 --SEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 114 (142)
Q Consensus 64 --d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~ 114 (142)
|.+.++.+.|+|.++|++.++.+|+...+..|.. +++++.+
T Consensus 78 ~~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~----------~~~~~~~ 120 (123)
T cd03011 78 INDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVT----------SEWGLRL 120 (123)
T ss_pred EECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccC----------CHHHHHh
Confidence 3445789999999999999998777444444444 6666654
No 85
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.55 E-value=1.6e-13 Score=97.56 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCC----------------------CcccHHhhccccCC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDIS----------------------EVPDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d----------------------~~~~~~~~~~v~~~ 78 (142)
.+++++|+|||+||++|+...+.+.++.+++++. +.++.|+.+ ...++.+.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 5789999999999999999999999999988653 566666654 34567889999999
Q ss_pred cEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 79 STVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 79 Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
|+++++.+++++.....|. .+.+++.+.++++
T Consensus 140 P~~~lid~~g~i~~~~~g~---------~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGE---------MTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCC---------CCHHHHHHHHHHh
Confidence 9998887555554443333 2778888888764
No 86
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.54 E-value=2.6e-14 Score=108.96 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHh----c-CCeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETI----K-NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~----~-~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
.+++..+.. ..+|+|+|||+||+-.+++.|+|++.++.+ + +.+++..||++.+..++.+|.|..+||+.+|++
T Consensus 4 ~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 4 ENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 456666653 679999999999999999999999987765 3 356777799999999999999999999999999
Q ss_pred CcEEEEEeccccccccccccCChhHHHHHHHHHHh--------------hhhcCCceEECcCC
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR--------------GARKGRGLVIAPKD 135 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~--------------~~~~~~~~~~~~~~ 135 (142)
|....+++.|. .+.+.|.+.|++... -..++++.+++..+
T Consensus 82 G~~~~rEYRg~---------RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~ 135 (375)
T KOG0912|consen 82 GEMMKREYRGQ---------RSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFP 135 (375)
T ss_pred cchhhhhhccc---------hhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEec
Confidence 99988777765 377777777776432 12346677777654
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.54 E-value=7.7e-14 Score=123.01 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEe---CC------------------------CcccHHhhc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVD---IS------------------------EVPDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd---~d------------------------~~~~~~~~~ 73 (142)
+||+|||+|||+||+||+.+.|.|++++++|++. +.++.|. .| ...++.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999753 4455453 12 233567789
Q ss_pred cccCCcEEEEEe-cCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 74 ELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 74 ~v~~~Pt~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+|.++|+++++. +|+.+.+..|.. ..++|.++|+.++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~----------~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEG----------HRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEeccc----------CHHHHHHHHHHHHH
Confidence 999999999995 566565554544 67888888887654
No 88
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=1.3e-13 Score=99.38 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=64.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-------------ccHHhhccc--cCCcEEEEEecCcEE-
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-------------PDFNTMYEL--YDPSTVMFFFRNKHI- 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-------------~~~~~~~~v--~~~Pt~~~~~~g~~v- 90 (142)
+|+|||+||++|+++.|.+.+++++++ +.++.|+.|+. ..+.+.|++ .++||.+++..++.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999985 45555554432 225567884 699999999655544
Q ss_pred -EEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 91 -MIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 91 -~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
....|.. +.+++.+.|+++++.
T Consensus 151 ~~~~~G~~----------~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGAT----------DAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCC----------CHHHHHHHHHHHHhh
Confidence 3567766 889999999998865
No 89
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.51 E-value=2.8e-14 Score=109.01 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=67.0
Q ss_pred HHHHHHHH-hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 12 WAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 12 ~~~~~~i~-~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..+++... ...+...+|+||||||++|+++.|++.++.-+++. -+.+.++|++..+.++.+|+|+++||+.||+++
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC
Confidence 34444333 33467899999999999999999999998776653 256777999999999999999999999999866
Q ss_pred cEEEEEeccc
Q 032360 88 KHIMIDLGTG 97 (142)
Q Consensus 88 ~~v~~~~~~~ 97 (142)
..+ ...||.
T Consensus 111 ~a~-dYRG~R 119 (468)
T KOG4277|consen 111 HAI-DYRGGR 119 (468)
T ss_pred eee-ecCCCc
Confidence 555 445555
No 90
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.48 E-value=1.2e-13 Score=83.98 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=51.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
++.|+++||++|+.+.+.++++++.++ .+.+..+|+++++++++++++.++||+++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 678999999999999999999987653 57888899999999999999999999733 5543
No 91
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.47 E-value=3.6e-13 Score=89.58 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLV 61 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~v 61 (142)
+|++++|+||++||++|+.+.|.++++++++.+.+.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 3799999999999999999999999998887655544444
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.47 E-value=7.7e-13 Score=86.48 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=60.4
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEeCCCc-----------------------ccHHhhccccC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIK-NFAVIYLVDISEV-----------------------PDFNTMYELYD 77 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~-~~~~~~~vd~d~~-----------------------~~~~~~~~v~~ 77 (142)
.+++++|.||++||++|+...+.+.++.+++. ..+.++.|+.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 47899999999999999999999999999885 2467777888875 67899999999
Q ss_pred CcEEEEEecCcEEEEE
Q 032360 78 PSTVMFFFRNKHIMID 93 (142)
Q Consensus 78 ~Pt~~~~~~g~~v~~~ 93 (142)
+|++.++.+++++...
T Consensus 98 ~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 98 LPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEEECCCCcEEEE
Confidence 9999888755555433
No 93
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.44 E-value=3.2e-12 Score=87.59 Aligned_cols=100 Identities=5% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHHH--HhcCCCEEEEEEeCCCCHHHHHHHHHHH---HHHHHhcCCeEEEEEeCCCcc-cHHhhccccCCcEEEEEec
Q 032360 13 AVDQAI--LAEEERLVVIRFGHDWDETCMQMDEVLS---SVAETIKNFAVIYLVDISEVP-DFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 13 ~~~~~i--~~~~~k~vvv~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~~~vd~d~~~-~~~~~~~v~~~Pt~~~~~~ 86 (142)
++++++ +..++|+|+|+|+++||++|+.|...+. ++.+....+.+.+.+|.+... ... ..+ .++||++|+..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~ 88 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDP 88 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECC
Confidence 454443 3456999999999999999999988653 344433323444445544221 111 233 57899999965
Q ss_pred Cc-EEEEEeccccccccccccCChhHHHHHHH
Q 032360 87 NK-HIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 87 g~-~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
++ .+....|...+.+... .+.++..+++
T Consensus 89 ~g~vi~~i~Gy~~~~~~~y---~~~~~~~~~~ 117 (130)
T cd02960 89 SLTVRADITGRYSNRLYTY---EPADIPLLIE 117 (130)
T ss_pred CCCCcccccccccCcccee---CcCcHHHHHH
Confidence 54 4444445444433333 4454444444
No 94
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.44 E-value=4.6e-12 Score=84.83 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=68.8
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCC--CcccHHhhccccCCcEEEEEec--CcEEEEE
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEV-L--SSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFR--NKHIMID 93 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~-l--~~l~~~~~~~~~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~~~--g~~v~~~ 93 (142)
.++|+++|+|+++||++|+.|... + .++.+.+..+.+++.+|++ +..+++..|++.++|++.++.. |+.+...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 458999999999999999999764 3 3355555445566667776 4567899999999999999965 5555444
Q ss_pred eccccccccccccCChhHHHHHHHHHHh
Q 032360 94 LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 94 ~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
.|.. ++++|...|++...
T Consensus 95 ~G~~----------~~~~f~~~L~~~~~ 112 (114)
T cd02958 95 SGNI----------TPEDLLSQLIEFLE 112 (114)
T ss_pred cCCC----------CHHHHHHHHHHHHh
Confidence 4444 88999999888653
No 95
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.44 E-value=1.5e-12 Score=94.64 Aligned_cols=86 Identities=9% Similarity=0.172 Sum_probs=60.0
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--------------------cccHHhhccccCCcEE
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE--------------------VPDFNTMYELYDPSTV 81 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--------------------~~~~~~~~~v~~~Pt~ 81 (142)
.|++++|+|||+||++|+.+.|.+.++.+++. ..++.|..+. ..++.+.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 58999999999999999999999999987653 2233333211 2356778899999998
Q ss_pred EEEecCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 82 ~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+++++++.+.. .+.. .+.+++.++++++
T Consensus 151 ~lID~~G~I~~-~g~~---------~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRA-KGLT---------NTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEE-ccCC---------CCHHHHHHHHHHH
Confidence 88876565532 2322 1556666666655
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.44 E-value=1.2e-12 Score=88.94 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCC-----C----------------------cccHHhhc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDIS-----E----------------------VPDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d-----~----------------------~~~~~~~~ 73 (142)
+|++++|+|||+||++|+.+.|.|.++++++++ .+.++.|+.+ . ...+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 579999999999999999999999999999874 3555556431 1 12356678
Q ss_pred cccCCcEEEEEec-CcEEEEEec
Q 032360 74 ELYDPSTVMFFFR-NKHIMIDLG 95 (142)
Q Consensus 74 ~v~~~Pt~~~~~~-g~~v~~~~~ 95 (142)
++.++|+.+++.+ |+.+....|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 8999999999864 444444433
No 97
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.42 E-value=1.9e-12 Score=83.41 Aligned_cols=70 Identities=7% Similarity=-0.054 Sum_probs=59.2
Q ss_pred HhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 19 LAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 19 ~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
..-.+..-+..|+++||++|....+.++++++.++ .+.+..+|.++.++++++|+|.++||++ .+|+.+.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~v--idG~~~~ 77 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIF--LNGELFG 77 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEE--ECCEEEE
Confidence 33345667888999999999999999999998875 5788889999999999999999999985 3676554
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.42 E-value=3e-12 Score=88.76 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=57.8
Q ss_pred cCCCEEEEEEeCC-CCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------cccHHhhcccc-
Q 032360 21 EEERLVVIRFGHD-WDETCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------VPDFNTMYELY- 76 (142)
Q Consensus 21 ~~~k~vvv~F~A~-WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~---------------------~~~~~~~~~v~- 76 (142)
.+||+++|+||++ |||+|+...|.+.++.+.+.+ .+.++.|..+. ...+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3689999999999 999999999999999888654 35555555433 23577788887
Q ss_pred --------CCcEEEEEecCcEE-EEEeccc
Q 032360 77 --------DPSTVMFFFRNKHI-MIDLGTG 97 (142)
Q Consensus 77 --------~~Pt~~~~~~g~~v-~~~~~~~ 97 (142)
++|+++++.+++.+ ....|..
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 99999888665555 4444433
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.5e-13 Score=105.27 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEeccccccc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK 101 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~ 101 (142)
.+++.+|.||||||++|+.+.|.+.++++.+.+.+.+..||++++++++++|+|.++||+.+|.+| .....+.+.
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~---- 120 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGP---- 120 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCc----
Confidence 468999999999999999999999999999887667778999999999999999999999999888 333444443
Q ss_pred cccccCChhHHHHHHHHHHh
Q 032360 102 INWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 102 i~~~~~~~~el~~~i~~~~~ 121 (142)
.+.+++.+.+...+.
T Consensus 121 -----~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 121 -----RNAESLAEFLIKELE 135 (383)
T ss_pred -----ccHHHHHHHHHHhhc
Confidence 266777776665543
No 100
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.40 E-value=2.4e-12 Score=94.37 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=36.4
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
+|+++||+|||+||++|+.+.|.|.++.+++.+ .+.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 589999999999999999999999999999865 356666654
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.39 E-value=3.9e-12 Score=92.08 Aligned_cols=83 Identities=5% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEeCCCc-----------------------------ccH
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAET-IKN--FAVIYLVDISEV-----------------------------PDF 69 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~-~~~--~~~~~~vd~d~~-----------------------------~~~ 69 (142)
.||+.+|+|||+||+||+...|.+.++.++ ++- .-....||.|+. ..+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 599999999999999999999999999753 211 011245666542 124
Q ss_pred HhhccccCCcEE-EEEec-CcEEEEEeccccccccccccCChhHHHH
Q 032360 70 NTMYELYDPSTV-MFFFR-NKHIMIDLGTGNNNKINWALKDKQEFID 114 (142)
Q Consensus 70 ~~~~~v~~~Pt~-~~~~~-g~~v~~~~~~~~~~~i~~~~~~~~el~~ 114 (142)
+..|++.++|+. +++++ |+.+....|.. +.+++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l----------~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGAL----------SDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCC----------CHHHHHH
Confidence 557888999777 56644 44555566655 6666665
No 102
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.37 E-value=2.3e-12 Score=105.74 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=76.6
Q ss_pred cCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHH-H--HHHHhcCCeEEEEEeCCCcc----cHHhhccccCCc
Q 032360 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLS-S--VAETIKNFAVIYLVDISEVP----DFNTMYELYDPS 79 (142)
Q Consensus 7 ~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~-~--l~~~~~~~~~~~~vd~d~~~----~~~~~~~v~~~P 79 (142)
.+++..++++++.+..+|+|+|||||+||-.||.+++..- + ...+.. +++...+|.+++. ++.++|++.++|
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 3455558999999877789999999999999999998764 3 333333 5677779987654 578899999999
Q ss_pred EEEEEe-cCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 80 TVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 80 t~~~~~-~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+++||. +|++.....|- .+.+.|.+.+++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf----------~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGF----------LTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcce----------ecHHHHHHHHHHh
Confidence 999997 55555432222 3888888888764
No 103
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.37 E-value=6.3e-12 Score=79.52 Aligned_cols=64 Identities=22% Similarity=0.429 Sum_probs=48.8
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
.++|+++|+|+|+||++|+.|...+ .++.+.+.++.+.+.+|.++.....+. ...++|+++|+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 3589999999999999999999887 345553444678888999877654432 226799998875
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.36 E-value=8.5e-12 Score=93.61 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=36.3
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~ 63 (142)
.|+++||+|||+||++|+.+.|.|.++++++++. +.++.|++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 5799999999999999999999999999998653 56666664
No 105
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.33 E-value=8.2e-12 Score=80.89 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=60.5
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC-CcccHHhhcc--ccCCcEEEEEecCcEE
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYE--LYDPSTVMFFFRNKHI 90 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d-~~~~~~~~~~--v~~~Pt~~~~~~g~~v 90 (142)
+++++++||++||++|+.+.|.+.++++++...+.+..+|.. ..+++...|+ +..+|+++++.++..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 789999999999999999999999999998755677789997 8889999999 9999999988877764
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.33 E-value=1.9e-11 Score=87.26 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=36.3
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~ 63 (142)
.||++||+|||+||++|+...|.|.++.++|++. +.++.|+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 5799999999999999999999999999999753 56666654
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.30 E-value=7e-11 Score=84.22 Aligned_cols=103 Identities=8% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc-----------------------------ccHHh
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV-----------------------------PDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~-----------------------------~~~~~ 71 (142)
+++++||+||++||+.|..+.+.+.++.+++++ ++.++.|..|.. ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 578999999999999999999999999999863 466666665431 13466
Q ss_pred hccccCCcEEEEEecCcEEEEEeccccccccc-cccCChhHHHHHHHHHHhhhhc
Q 032360 72 MYELYDPSTVMFFFRNKHIMIDLGTGNNNKIN-WALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 72 ~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~-~~~~~~~el~~~i~~~~~~~~~ 125 (142)
.|++..+|+++++.+++++... +..+..... ..-.+.+++.+.|++++++.+-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR-GRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe-ecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 7889999999888766655322 211110000 0012568899999999877643
No 108
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.30 E-value=5.6e-11 Score=81.59 Aligned_cols=100 Identities=7% Similarity=0.082 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCCEEEEEEeC--CCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcccHHhhccccCCcEEEEEecCc
Q 032360 12 WAVDQAILAEEERLVVIRFGH--DWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A--~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
.+++..+.. +...+|.|-. .-++-+--..=+|.+++++|.+ .+.+++||+|++++++.+|+|.++||+++|++|+
T Consensus 25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 556666643 3445555543 3467788888899999999974 4889999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccCChhHHHHHHHHHHhhh
Q 032360 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 89 ~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
.+....|.. +.+++.+.|++++...
T Consensus 103 ~v~~i~G~~----------~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 103 YRGVLNGIH----------PWAELINLMRGLVEPQ 127 (132)
T ss_pred EEEEEeCcC----------CHHHHHHHHHHHhcCc
Confidence 997776665 8899999999887544
No 109
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=86.39 Aligned_cols=69 Identities=14% Similarity=0.327 Sum_probs=55.0
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------ccHHhhc
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF---AVIYLVDISEV-------------------------PDFNTMY 73 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~-------------------------~~~~~~~ 73 (142)
+||.|.++|.|.||||||.+-|.+.++.++.... ..++.|+.|.. +++..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5899999999999999999999999998877554 44555665542 2467789
Q ss_pred cccCCcEEEEEecCcEE
Q 032360 74 ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 74 ~v~~~Pt~~~~~~g~~v 90 (142)
+|.++|++.+.+..+.+
T Consensus 112 ~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTV 128 (157)
T ss_pred ccCcCceeEEecCCCCE
Confidence 99999999988766544
No 110
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.7e-11 Score=88.04 Aligned_cols=119 Identities=14% Similarity=0.216 Sum_probs=89.6
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCCcccHHhhccc------cC
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYEL------YD 77 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~~~~~~~v------~~ 77 (142)
++..++.+.+++.+.-+..+..+|.|+|.|.+.|+..+|.+.+|+.+|..+ ..|.+||+...++.+++|+| +.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 445678888888888777888999999999999999999999999999754 57888999999999999998 58
Q ss_pred CcEEEEEecCcEEEEEeccccccccccccCChhHHHHH--HHHHHhhh
Q 032360 78 PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI--VETVYRGA 123 (142)
Q Consensus 78 ~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~--i~~~~~~~ 123 (142)
+||+++|.+|+++.+.-.-..+.+..-..-+.+.+.+. ++++++.+
T Consensus 206 LPT~ilFq~gkE~~RrP~vd~~gra~s~~fSeenv~~~F~Ln~Ly~e~ 253 (265)
T KOG0914|consen 206 LPTYILFQKGKEVSRRPDVDVKGRAVSFPFSEENVCQHFELNRLYLEA 253 (265)
T ss_pred CCeEEEEccchhhhcCccccccCCcccccccHHHHHHHhcHHHHHHHH
Confidence 99999999999986543322222221111244544442 44555554
No 111
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.22 E-value=1.1e-10 Score=81.92 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=36.6
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
-+||++||+|||+||++|+...|.+.++.++++. .+.++.|+.
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3689999999999999999999999999999864 456666663
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.20 E-value=9.1e-11 Score=82.26 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=35.1
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
.||+|+|+|||+||+ |+.+.|.|.++++++.+ .+.++.|+.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 589999999999999 99999999999999864 456666654
No 113
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.5e-11 Score=100.57 Aligned_cols=77 Identities=13% Similarity=0.270 Sum_probs=62.1
Q ss_pred ChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeC--CCcccHHhhccccCCcEEEEE
Q 032360 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN---FAVIYLVDI--SEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 10 s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~--d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
+..+|+.++... .+--+|.||++|||+|++++|.++++++.... .+.+..||+ ++|..++..|+|.++||+.+|
T Consensus 45 d~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 45 DVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred ehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeec
Confidence 355787777653 35788999999999999999999999988754 234556886 467789999999999999999
Q ss_pred ecC
Q 032360 85 FRN 87 (142)
Q Consensus 85 ~~g 87 (142)
..+
T Consensus 124 ~~~ 126 (606)
T KOG1731|consen 124 PPD 126 (606)
T ss_pred CCc
Confidence 544
No 114
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.7e-11 Score=93.49 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
.+++..+.+ .+...+|.||||||++|+.+.|.+.+++..+. ..+.+..+|++....++..++|.+.||+.+|.+|..
T Consensus 152 ~~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 152 DNFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred cchhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc
Confidence 345544443 46789999999999999999999999999875 356777799998899999999999999999988877
Q ss_pred -EEEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 90 -IMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 90 -v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
.....+. .+.+.+.+.++.....
T Consensus 231 ~~~~~~~~----------R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 231 DIYYYSGL----------RDSDSIVSFVEKKERR 254 (383)
T ss_pred cccccccc----------ccHHHHHHHHHhhcCC
Confidence 3222222 2677777777776544
No 115
>smart00594 UAS UAS domain.
Probab=99.16 E-value=7.1e-10 Score=75.23 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=50.8
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCC--CcccHHhhccccCCcEEEEEecC
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
.++|+++|+|+++||++|+.+...+ .++.+-..++.++..+|++ +..+++..|++.++|++.++...
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 4689999999999999999987753 2344444445566667755 45568999999999999999543
No 116
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.12 E-value=5.7e-10 Score=76.58 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc---cccCCcEEEEEecCcEE
Q 032360 14 VDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY---ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 14 ~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~~~g~~v 90 (142)
..+.+.....+.-++.|..+|||.|++..|.+.++++..+ .+.+-.+..|+++++.++| +...+|+++++.+++..
T Consensus 32 ~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 32 QIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp HHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--E
T ss_pred HHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCE
Confidence 3345555556778999999999999999999999999754 5666668888888877665 67899999999765554
Q ss_pred EEEeccccccccccccCChhHHHHHHHH
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
.-.+|.. |+...+++++
T Consensus 111 lg~wger-----------P~~~~~~~~~ 127 (129)
T PF14595_consen 111 LGRWGER-----------PKEVQELVDE 127 (129)
T ss_dssp EEEEESS------------HHHH-----
T ss_pred eEEEcCC-----------CHHHhhcccc
Confidence 4555654 5666665543
No 117
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.10 E-value=1.2e-09 Score=79.26 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC-------------------------cccHHhhcc
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE-------------------------VPDFNTMYE 74 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~-------------------------~~~~~~~~~ 74 (142)
.||++||+|| ++||++|....|.|.++.+++.+ .+.++.|..|. ..++++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5899999999 99999999999999999888753 34455555442 124566788
Q ss_pred cc------CCcEEEEEecCcEE-EEEeccccccccccccCChhHHHHHHHHH
Q 032360 75 LY------DPSTVMFFFRNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 75 v~------~~Pt~~~~~~g~~v-~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+. ..|+.+++..++.+ ......... -.+.+++.+.|+++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~------~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGI------GRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCC------CCCHHHHHHHHHHh
Confidence 75 35887777654444 333322100 01567777777554
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.08 E-value=2.7e-09 Score=79.20 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=69.8
Q ss_pred HHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC-----------CcccHHhhccccCCcEEEE
Q 032360 15 DQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS-----------EVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 15 ~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d-----------~~~~~~~~~~v~~~Pt~~~ 83 (142)
++.+....++.-++.||.+.|+.|+.+.|++..++++|+ +.++.|++| .+..++++++|..+|++++
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 445555567888999999999999999999999999985 556666666 3467899999999999988
Q ss_pred EecCc--EEEEEeccccccccccccCChhHHHHHH
Q 032360 84 FFRNK--HIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 84 ~~~g~--~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
...+. ..++..|-. +.++|.+-|
T Consensus 190 v~~~~~~~~pv~~G~~----------s~~~L~~ri 214 (215)
T PF13728_consen 190 VNPNTKKWYPVSQGFM----------SLDELEDRI 214 (215)
T ss_pred EECCCCeEEEEeeecC----------CHHHHHHhh
Confidence 86544 445555555 777777643
No 119
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.06 E-value=1.1e-09 Score=66.57 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=49.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc----HHhhccccCCcEEEEEecCcEEEEEecccccccc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKI 102 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i 102 (142)
+..|+++||++|++..+.|.+. .+.+..+|++++++ +.+.+++.++|++.+. |+. ..|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~----~~g~----- 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI----IVGF----- 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE----EeeC-----
Confidence 4679999999999999888651 35667788887654 4566899999998653 432 3344
Q ss_pred ccccCChhHHHHHH
Q 032360 103 NWALKDKQEFIDIV 116 (142)
Q Consensus 103 ~~~~~~~~el~~~i 116 (142)
+++++.+.|
T Consensus 65 -----~~~~i~~~i 73 (74)
T TIGR02196 65 -----DPEKLDQLL 73 (74)
T ss_pred -----CHHHHHHHh
Confidence 667776665
No 120
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.06 E-value=2.8e-09 Score=76.01 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=35.7
Q ss_pred CCCEEEEEEeCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 032360 22 EERLVVIRFGHDW-DETCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~A~W-C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~ 65 (142)
.||+++|+||++| |++|..+.|.|.++++++. .+.++.|..|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 5899999999999 9999999999999998875 45555555543
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.04 E-value=2.3e-09 Score=77.53 Aligned_cols=42 Identities=7% Similarity=-0.159 Sum_probs=33.4
Q ss_pred CCCEE-EEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 22 EERLV-VIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 22 ~~k~v-vv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
.||++ ++.+||+|||+|+.+.|.|.++.+++.+ .+.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 57754 4566999999999999999999999865 356666654
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.04 E-value=5e-10 Score=69.16 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=42.4
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-----cccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-----ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-----~v~~~Pt~~~~~~g~~v 90 (142)
++.||++||++|+++.+.|.++. +.+-.+|+++.+...+.+ ++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 57899999999999999987653 334458888777666553 88899996 56555443
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.02 E-value=3.5e-09 Score=72.58 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc---------------------ccHHhhccccCC
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV---------------------PDFNTMYELYDP 78 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~---------------------~~~~~~~~v~~~ 78 (142)
.|++++|.|| +.||+.|..+.|.+.++.+++.+ .+.++.|..|.. ..+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4899999999 58999999999999999888753 355555554432 245667888777
Q ss_pred ---------cEEEEEecCcEEEEEecc
Q 032360 79 ---------STVMFFFRNKHIMIDLGT 96 (142)
Q Consensus 79 ---------Pt~~~~~~g~~v~~~~~~ 96 (142)
|+.+++.+++++...+.|
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g 128 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRK 128 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEec
Confidence 888788654544333333
No 124
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.00 E-value=5.3e-09 Score=72.20 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=52.0
Q ss_pred CCCEEEEEEeCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-----------------------ccHHhhccccC
Q 032360 22 EERLVVIRFGHDW-DETCMQMDEVLSSVAETIKNFAVIYLVDISEV-----------------------PDFNTMYELYD 77 (142)
Q Consensus 22 ~~k~vvv~F~A~W-C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-----------------------~~~~~~~~v~~ 77 (142)
.||+++|+||++| |++|+...|.|.+++++++ .+.++.|+.|.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5799999999999 6999999999999999986 466666666431 23555666643
Q ss_pred ------CcEEEEEec-CcEEEEEec
Q 032360 78 ------PSTVMFFFR-NKHIMIDLG 95 (142)
Q Consensus 78 ------~Pt~~~~~~-g~~v~~~~~ 95 (142)
.|+..++.. |+.+....|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEEC
Confidence 577777754 444444443
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.00 E-value=5.1e-09 Score=70.16 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=55.0
Q ss_pred CCCEEEEEEeCC-CCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcc---------------------cHHhhcccc--
Q 032360 22 EERLVVIRFGHD-WDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVP---------------------DFNTMYELY-- 76 (142)
Q Consensus 22 ~~k~vvv~F~A~-WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~---------------------~~~~~~~v~-- 76 (142)
.|++++|.||++ ||++|+...+.+.++.++++. .+.++.|..+... ++.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 999999999999999998864 4677777766532 456667777
Q ss_pred ----CCcEEEEEecCcEE
Q 032360 77 ----DPSTVMFFFRNKHI 90 (142)
Q Consensus 77 ----~~Pt~~~~~~g~~v 90 (142)
..|++.++.+++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTSEESEEEEEEETTSBE
T ss_pred cCCceEeEEEEECCCCEE
Confidence 88888887766655
No 126
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.98 E-value=3.3e-09 Score=61.32 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=49.3
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHh---hccccCCcEEEEEecC
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---MYELYDPSTVMFFFRN 87 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~---~~~v~~~Pt~~~~~~g 87 (142)
++.||++||++|+.+.+.+.++ +.....+.+..+|.+...+... .+++...|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3334457788899888876654 7899999999888766
No 127
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.98 E-value=1.1e-08 Score=72.55 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHH-HH--HHHHHhcCCeEEEEEeCCCcccHHhhc--------cccCCcE
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEV-LS--SVAETIKNFAVIYLVDISEVPDFNTMY--------ELYDPST 80 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~-l~--~l~~~~~~~~~~~~vd~d~~~~~~~~~--------~v~~~Pt 80 (142)
+.++++- .++|+++|+++++||..|+.|... |. ++++.+..+.+-++||.++.+++...| +..+.|+
T Consensus 28 ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 4455553 358999999999999999999863 32 355555545677789999999998888 6789999
Q ss_pred EEEEec-CcEE
Q 032360 81 VMFFFR-NKHI 90 (142)
Q Consensus 81 ~~~~~~-g~~v 90 (142)
.+|+.. |+.+
T Consensus 106 ~vfltPdg~p~ 116 (163)
T PF03190_consen 106 TVFLTPDGKPF 116 (163)
T ss_dssp EEEE-TTS-EE
T ss_pred eEEECCCCCee
Confidence 998865 4444
No 128
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.98 E-value=1.3e-08 Score=72.81 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------ccHHh
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV----------------------------PDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~----------------------------~~~~~ 71 (142)
.||++||+|| ++||++|....|.|.++++++.+ .+.++.|..|.. .++++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5799999999 89999999999999999998854 355555554432 13455
Q ss_pred hcccc------CCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 72 MYELY------DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 72 ~~~v~------~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
.|++. ..|+.+++.+++.+.....+.... -.+.+++.+.|+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~-----~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPV-----GRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCC-----CCCHHHHHHHHHHhh
Confidence 66665 467887886555543333222110 015577777777663
No 129
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-09 Score=80.54 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=79.5
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
..++...+| +.+ .++.+++.|||+||.+|.+|...+..+++.. .+..+++++.++.++++..+.+.+.|++.++.
T Consensus 4 ~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 4 QFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred eeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 455666666 232 6899999999999999999999999999887 46788899999999999999999999999998
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
.|..+.+. .+. .+..+...++.+..
T Consensus 79 ~~~~v~~l-~~~----------~~~~~~~~~~~~~~ 103 (227)
T KOG0911|consen 79 LGEKVDRL-SGA----------DPPFLVSKVEKLAE 103 (227)
T ss_pred cchhhhhh-hcc----------CcHHHHHHHHHhhh
Confidence 78777433 333 45666666665543
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.93 E-value=2.7e-08 Score=75.47 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-----------ccHHhhccccCCcEEEE
Q 032360 15 DQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-----------PDFNTMYELYDPSTVMF 83 (142)
Q Consensus 15 ~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-----------~~~~~~~~v~~~Pt~~~ 83 (142)
++++....++.-++.||.+-|+.|+++.|++..++++|+ +.++.|++|.. ...+++++|..+|++++
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 345555556789999999999999999999999999986 55666666644 34788999999999988
Q ss_pred EecC--cEEEEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 84 FFRN--KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 84 ~~~g--~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
...+ +..++.+|-. +.++|.+.|..+...
T Consensus 220 v~~~t~~~~pv~~G~i----------S~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 220 VNPKSQKMSPLAYGFI----------SQDELKERILNVLTQ 250 (256)
T ss_pred EECCCCcEEEEeeccC----------CHHHHHHHHHHHHhc
Confidence 8544 4455566655 889998888777543
No 131
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.92 E-value=1.4e-08 Score=70.00 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=34.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcc
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVP 67 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~ 67 (142)
++.+++.||++||++|+...|.|.++.+++.. .+.++.|+.+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 34555556799999999999999999998853 4667777766543
No 132
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.91 E-value=8.5e-09 Score=64.68 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=43.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-----cHHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|+++|||+|+.+.+.|.++. .+....++.+|.+++. .+.+.+++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 47899999999999999999876 2222456667766543 26666788899996 5566554
No 133
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.90 E-value=1.8e-08 Score=73.27 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC-------------------------cccHHhhcc
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE-------------------------VPDFNTMYE 74 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~-------------------------~~~~~~~~~ 74 (142)
.||+++|.|| ++||++|..+.+.|.++.+++.. .+.++.|..|. ..++++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6889999999 99999999999999999998853 34555555443 224677788
Q ss_pred c----cCC--cEEEEEecCcEEE-EEeccccccccccccCChhHHHHHHHHHHh
Q 032360 75 L----YDP--STVMFFFRNKHIM-IDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 75 v----~~~--Pt~~~~~~g~~v~-~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+ .++ |+.+++..++.+. ....... + -.+.+++.+.|+.+-.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~---~---~~~~~eil~~l~alq~ 157 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEG---I---GRDASDLLRKIKAAQY 157 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCC---C---CCCHHHHHHHHHhhhh
Confidence 7 356 8888886555543 3222110 0 0278888888877644
No 134
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.88 E-value=4.3e-08 Score=67.83 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=34.1
Q ss_pred CC-CEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCC
Q 032360 22 EE-RLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDIS 64 (142)
Q Consensus 22 ~~-k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d 64 (142)
.| ++++|.|| ++||++|....|.+.++.+++.+ .+.++.|+.+
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 35 88888887 99999999999999999988853 4556555544
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.85 E-value=5.5e-08 Score=67.98 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCCEEEEEEeCC-CCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 032360 22 EERLVVIRFGHD-WDETCMQMDEVLSSVAETIKN-FAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~A~-WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~ 65 (142)
.||+++|+||++ ||+.|....+.+.++.+++.+ .+.++.|+.|.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 578999999986 678899999999999888754 35666666554
No 136
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.85 E-value=5.8e-08 Score=71.31 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCCEEEE-EEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC---------------------------cccHHhh
Q 032360 22 EERLVVI-RFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE---------------------------VPDFNTM 72 (142)
Q Consensus 22 ~~k~vvv-~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~---------------------------~~~~~~~ 72 (142)
.|+.++| +||++||++|..+.+.|.++.+++.+ .+.++.|..|. ..++++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5776665 68999999999999999999888863 35555555442 1235666
Q ss_pred cccc------CCcEEEEEecCcEEEEEe-ccccccccccccCChhHHHHHHHHHHhhh
Q 032360 73 YELY------DPSTVMFFFRNKHIMIDL-GTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 73 ~~v~------~~Pt~~~~~~g~~v~~~~-~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
|++. .+|+.+++..++.+.... .... .+ .+.+|+...|+.+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~----~g--r~~~ellr~l~~l~~~~ 157 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAE----TG--RNIDEIIRITKALQVNW 157 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCC----CC--CCHHHHHHHHHHhhhHH
Confidence 7763 478888886555553322 1110 01 28899999998876533
No 137
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.83 E-value=2.8e-08 Score=75.87 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=68.8
Q ss_pred cccCCChHHHHHHHHhc-CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 5 LPHLHSGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~-~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
+.++.++..+-+++... .+..|||+||-+-++.|..|...|..|+.+|+ .+.|+.|..+..+ +...|.+.++||+++
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtllv 204 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTLLV 204 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEEEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEEEE
Confidence 34566766676666532 35689999999999999999999999999997 6899999988776 788999999999999
Q ss_pred EecCcEEEEEeccc
Q 032360 84 FFRNKHIMIDLGTG 97 (142)
Q Consensus 84 ~~~g~~v~~~~~~~ 97 (142)
|++|..+...++..
T Consensus 205 Yk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 205 YKNGDLIGNFVGLT 218 (265)
T ss_dssp EETTEEEEEECTGG
T ss_pred EECCEEEEeEEehH
Confidence 99888776555533
No 138
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.78 E-value=3.3e-08 Score=67.83 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=36.0
Q ss_pred CCCEEEEEEeCCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEeCC
Q 032360 22 EERLVVIRFGHDWDET-CMQMDEVLSSVAETIKN----FAVIYLVDIS 64 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~-C~~~~p~l~~l~~~~~~----~~~~~~vd~d 64 (142)
.+++++|.||++||++ |....+.+.++.+++.. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5799999999999998 99999999999988854 2666666554
No 139
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.76 E-value=2.2e-07 Score=70.25 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred HHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--c---------ccHHhhccccCCcEEEEE
Q 032360 16 QAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE--V---------PDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 16 ~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~---------~~~~~~~~v~~~Pt~~~~ 84 (142)
+++....++.-++.||.+-|+.|+++.|++..++++|+ +.++.|++|- . ...++.++|..+|++++.
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 34444445688999999999999999999999999986 4444455443 2 235678999999998888
Q ss_pred ec--CcEEEEEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 85 FR--NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 85 ~~--g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
.. ++..++.+|-. +.++|.+.|..+..+
T Consensus 214 ~~~t~~~~pv~~G~i----------S~deL~~Ri~~v~t~ 243 (248)
T PRK13703 214 DPKSGSVRPLSYGFI----------TQDDLAKRFLNVSTD 243 (248)
T ss_pred ECCCCcEEEEeeccC----------CHHHHHHHHHHHHhc
Confidence 54 34566667766 889999888777544
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.75 E-value=1.6e-07 Score=63.48 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=51.9
Q ss_pred HHHHHHHHh--cCCCEEEEEEeC-------CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-------ccHHh--hc
Q 032360 12 WAVDQAILA--EEERLVVIRFGH-------DWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-------PDFNT--MY 73 (142)
Q Consensus 12 ~~~~~~i~~--~~~k~vvv~F~A-------~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-------~~~~~--~~ 73 (142)
.++.+.+.. ..+++++|.|++ +|||.|+.-.|.+++.-...+....++.|.+..- -.+.. .+
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 456666654 457899999986 5999999999999998776655667776665332 23555 68
Q ss_pred cccCCcEEEEEecCcE
Q 032360 74 ELYDPSTVMFFFRNKH 89 (142)
Q Consensus 74 ~v~~~Pt~~~~~~g~~ 89 (142)
++.++||++-+..+++
T Consensus 86 ~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 86 KLKGIPTLIRWETGER 101 (119)
T ss_dssp ---SSSEEEECTSS-E
T ss_pred eeeecceEEEECCCCc
Confidence 9999999988866644
No 141
>PRK15000 peroxidase; Provisional
Probab=98.73 E-value=2.3e-07 Score=68.09 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCCEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------ccHHh
Q 032360 22 EERLVVIRFGH-DWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV----------------------------PDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~A-~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~----------------------------~~~~~ 71 (142)
+||+++|+||+ +||++|..+.+.|.++++++.. .+.++.|..|.. .++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58999999999 5999999999999999998863 355555555421 13455
Q ss_pred hcccc------CCcEEEEEecCcEEEE-EeccccccccccccCChhHHHHHHHHHHhhh
Q 032360 72 MYELY------DPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 72 ~~~v~------~~Pt~~~~~~g~~v~~-~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
.|++. ..|+.+++...+.+.. ..+...- -.+.+++.+.|+.+.-..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~------gr~~~eilr~l~al~~~~ 165 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPL------GRNIDEMLRMVDALQFHE 165 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCC------CCCHHHHHHHHHHhhhHH
Confidence 67775 5788877765555433 3332110 027788888887754433
No 142
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.9e-07 Score=63.93 Aligned_cols=95 Identities=19% Similarity=0.351 Sum_probs=69.0
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHH---HHHHHhcCCeEEEEEeCCC----------------cccHHhhccccCCcEE
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLS---SVAETIKNFAVIYLVDISE----------------VPDFNTMYELYDPSTV 81 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~~~vd~d~----------------~~~~~~~~~v~~~Pt~ 81 (142)
.++|..++.|.++.|+.|.++...+. ++.+-+.++..++.+|+.. .+++++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 35899999999999999999998764 4554444445555566432 2379999999999999
Q ss_pred EEEecC-cEEEEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 82 MFFFRN-KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 82 ~~~~~g-~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
+||++. +.+..--|- .++++|...++=+.++-.+
T Consensus 120 vFfdk~Gk~Il~lPGY----------~ppe~Fl~vlkYVa~g~yk 154 (182)
T COG2143 120 VFFDKTGKTILELPGY----------MPPEQFLAVLKYVADGKYK 154 (182)
T ss_pred EEEcCCCCEEEecCCC----------CCHHHHHHHHHHHHHHHHh
Confidence 999654 555433332 3889999888877665543
No 143
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.68 E-value=1.6e-07 Score=67.83 Aligned_cols=87 Identities=20% Similarity=0.126 Sum_probs=74.4
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
.++.|..+|=+... ...-||+.||-+--..|+-|...|+.|++.+- ...|+.||+...|=++.+++|..+|++.+|+
T Consensus 69 ~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 69 EEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred EEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence 45667666655554 34679999999999999999999999999875 4689999999999999999999999999999
Q ss_pred cCcEEEEEec
Q 032360 86 RNKHIMIDLG 95 (142)
Q Consensus 86 ~g~~v~~~~~ 95 (142)
+|..+...+|
T Consensus 146 ~g~~~D~iVG 155 (211)
T KOG1672|consen 146 NGKTVDYVVG 155 (211)
T ss_pred cCEEEEEEee
Confidence 9998866555
No 144
>PRK13189 peroxiredoxin; Provisional
Probab=98.66 E-value=4.9e-07 Score=67.39 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=60.3
Q ss_pred CCCE-EEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------ccHHhh
Q 032360 22 EERL-VVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV---------------------------PDFNTM 72 (142)
Q Consensus 22 ~~k~-vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~---------------------------~~~~~~ 72 (142)
.|+. +|++||++||++|..+.+.|.++++++.. ++.++.|.+|.. .++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 5675 45688999999999999999999998853 355555554431 235566
Q ss_pred cccc-------CCcEEEEEecCcEEE-EEeccccccccccccCChhHHHHHHHHHHh
Q 032360 73 YELY-------DPSTVMFFFRNKHIM-IDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 73 ~~v~-------~~Pt~~~~~~g~~v~-~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
|++. ..|+.+++..++.+. ...+... . -.+.+++...|+.+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~----~--gr~~~eilr~l~alq~ 164 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQE----V--GRNMDEILRLVKALQT 164 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCC----C--CCCHHHHHHHHHHhhh
Confidence 7764 457777776555543 2232110 0 0267888888887644
No 145
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.66 E-value=2.5e-07 Score=63.20 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIK-NFAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~-~~~~~~~vd~d~ 65 (142)
.+++++|.|| +.||++|....|.+.++.+++. +.+.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5899999999 7899999999999999998874 245666665543
No 146
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.65 E-value=3.3e-07 Score=58.07 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=54.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc----cHHhhcc--ccCCcEEEEEecCcEEEEEecccccc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYE--LYDPSTVMFFFRNKHIMIDLGTGNNN 100 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~v~~~~~~~~~~ 100 (142)
++.|+.+||++|++....|+++..++. .+.+..+|+++.. ++.+..+ +.++|++ |.+|+.+ |
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~i----g----- 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHI----G----- 70 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEE----c-----
Confidence 678999999999999999999987653 4666678887643 4555454 4788996 4577665 3
Q ss_pred ccccccCChhHHHHHHHHHH
Q 032360 101 KINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 101 ~i~~~~~~~~el~~~i~~~~ 120 (142)
..+++.+.+++.+
T Consensus 71 -------g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 -------GCTDFEAYVKENL 83 (85)
T ss_pred -------CHHHHHHHHHHhc
Confidence 3477777776653
No 147
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.62 E-value=2.2e-07 Score=67.32 Aligned_cols=42 Identities=10% Similarity=-0.102 Sum_probs=34.2
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
-.||++||.|||+||++|+ ..|.|+++.++|.+ .+.++.+.+
T Consensus 23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeec
Confidence 3689999999999999997 48899999999864 355556654
No 148
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.61 E-value=7.9e-07 Score=66.02 Aligned_cols=93 Identities=9% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCEE-EEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------ccHHhh
Q 032360 22 EERLV-VIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV---------------------------PDFNTM 72 (142)
Q Consensus 22 ~~k~v-vv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~---------------------------~~~~~~ 72 (142)
.|+++ |+.|||+|||+|..+.+.|.++++++.. .+.++.|.+|.. .++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 46764 6799999999999999999999998853 355555555432 235666
Q ss_pred cccc-------CCcEEEEEecCcEEEEE-eccccccccccccCChhHHHHHHHHHH
Q 032360 73 YELY-------DPSTVMFFFRNKHIMID-LGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 73 ~~v~-------~~Pt~~~~~~g~~v~~~-~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
|++. ..|+++++..++.+... +.... .+ .+.+++.+.|+++.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~----~g--r~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQE----VG--RNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCC----CC--CCHHHHHHHHHHhh
Confidence 7762 57888888655554332 22110 01 26788888888763
No 149
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.61 E-value=5.4e-07 Score=56.09 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=53.0
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCC
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 108 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~ 108 (142)
.+++++|+.|..+...++++.+.++ +.+-.+|..+.+++ .+|+|.++|++ +.+|+.+ ..|.. .+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPal--vIng~~~--~~G~~---------p~ 67 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPAL--VINGKVV--FVGRV---------PS 67 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEE--EETTEEE--EESS-----------H
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEE--EECCEEE--EEecC---------CC
Confidence 3367779999999999999998863 55556888777777 99999999997 4466543 33412 26
Q ss_pred hhHHHHHHH
Q 032360 109 KQEFIDIVE 117 (142)
Q Consensus 109 ~~el~~~i~ 117 (142)
.++|..+|+
T Consensus 68 ~~el~~~l~ 76 (76)
T PF13192_consen 68 KEELKELLE 76 (76)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 778877764
No 150
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.60 E-value=7.7e-07 Score=66.05 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=60.8
Q ss_pred CCCEEEE-EEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcc---------------------------cHHhh
Q 032360 22 EERLVVI-RFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVP---------------------------DFNTM 72 (142)
Q Consensus 22 ~~k~vvv-~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~---------------------------~~~~~ 72 (142)
.||+++| .||++||++|..+.+.|.++++++.+ .+.++.|++|... ++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4676655 88999999999999999999999853 3555555555322 34556
Q ss_pred cccc-------CCcEEEEEecCcEEEE-EeccccccccccccCChhHHHHHHHHHH
Q 032360 73 YELY-------DPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 73 ~~v~-------~~Pt~~~~~~g~~v~~-~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
|++. ..|+.+++..++.+.. ..+... .+ .+.+|+...|+.+-
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~----~g--r~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPME----IG--RNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCC----CC--CCHHHHHHHHHHhh
Confidence 6652 3577777765555433 233211 01 27888888888763
No 151
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.60 E-value=4.2e-07 Score=54.92 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=37.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc----cccCCcEEEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY----ELYDPSTVMF 83 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~----~v~~~Pt~~~ 83 (142)
++.|+++||++|+.+.+.+.+. .+.+..+|++..++..+.+ ++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5779999999999998888652 2455567877765544444 6788999743
No 152
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.56 E-value=1.3e-06 Score=66.64 Aligned_cols=93 Identities=9% Similarity=0.062 Sum_probs=61.9
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------cccHHh
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE----------------------------VPDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~----------------------------~~~~~~ 71 (142)
+++++|+.|| ++||++|..+.+.|.++.+++.+ .+.++.|..|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4677888877 89999999999999999998853 34455554443 124667
Q ss_pred hcccc-----CCcEEEEEecCcEEEE-EeccccccccccccCChhHHHHHHHHHH
Q 032360 72 MYELY-----DPSTVMFFFRNKHIMI-DLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 72 ~~~v~-----~~Pt~~~~~~g~~v~~-~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
.|++. ..|+.++++.++.+.. ...... . -.+.+|+.+.|+.+-
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~----~--gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLG----L--GRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCC----C--CCCHHHHHHHHHHhc
Confidence 78874 4788888865555433 222110 0 027888888888764
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8.8e-07 Score=59.38 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=57.8
Q ss_pred hHHHHHHHHhc-CCCEEEEEEeC--------CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-------ccHHhhcc
Q 032360 11 GWAVDQAILAE-EERLVVIRFGH--------DWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-------PDFNTMYE 74 (142)
Q Consensus 11 ~~~~~~~i~~~-~~k~vvv~F~A--------~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-------~~~~~~~~ 74 (142)
-++|++.+.+. +++-++|.|++ ||||.|.+-.|.+.+.-++.+.++.|+.|++.+- -.+....+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 45677777653 56779999986 7999999999999998887777788888876543 34556666
Q ss_pred c-cCCcEEEEEec
Q 032360 75 L-YDPSTVMFFFR 86 (142)
Q Consensus 75 v-~~~Pt~~~~~~ 86 (142)
+ .++||++=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999877753
No 154
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.50 E-value=2.4e-06 Score=62.75 Aligned_cols=91 Identities=12% Similarity=0.215 Sum_probs=58.9
Q ss_pred CE-EEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------ccHHhhcc
Q 032360 24 RL-VVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV---------------------------PDFNTMYE 74 (142)
Q Consensus 24 k~-vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~---------------------------~~~~~~~~ 74 (142)
++ +++.||++||+.|..+.+.|.++++++.+ .+.++.|.+|.. .++++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 56689999999999999999999998864 355666655531 24566777
Q ss_pred cc----CC----cEEEEEecCcEEE-EEeccccccccccccCChhHHHHHHHHHH
Q 032360 75 LY----DP----STVMFFFRNKHIM-IDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 75 v~----~~----Pt~~~~~~g~~v~-~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+. +. |+.+++..++.+. ...+.... + .+.+++.+.|+++.
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~----g--r~~~ell~~l~~lq 154 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATT----G--RNFDEILRVVDALQ 154 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCC----C--CCHHHHHHHHHHHh
Confidence 64 22 3456665555543 33332210 0 26788888888763
No 155
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.48 E-value=5.4e-06 Score=54.76 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=64.8
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc----HHhhcccc-CCcE
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELY-DPST 80 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----~~~~~~v~-~~Pt 80 (142)
..|++.++|++++....+++++|.=.+++||-..+....|++..+..++.+.++.+|+-+.+. +++.|+|. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 468899999999998778999999999999999999999999988876557888899887764 67788985 7799
Q ss_pred EEEEecCcEEEEEe
Q 032360 81 VMFFFRNKHIMIDL 94 (142)
Q Consensus 81 ~~~~~~g~~v~~~~ 94 (142)
++++++|+.+.-..
T Consensus 82 ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 82 VILIKNGKVVWHAS 95 (105)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEECc
Confidence 99999999886543
No 156
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.46 E-value=4e-06 Score=56.46 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=62.6
Q ss_pred cCCCEEEEEEeCC----CCHHHHHHH--HHHHHHHHHhcCCeEEEEEeCCCc--ccHHhhccccCCcEEEEEe--cCc-E
Q 032360 21 EEERLVVIRFGHD----WDETCMQMD--EVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFF--RNK-H 89 (142)
Q Consensus 21 ~~~k~vvv~F~A~----WC~~C~~~~--p~l~~l~~~~~~~~~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~--~g~-~ 89 (142)
.++|+++|+++++ ||..|+... |.+.++-+ ++.++...|++.. .+++..+++.++|++.++. +++ .
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 4689999999999 999997743 55555443 3456666777644 4688899999999998882 333 2
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+.....|. .++++|...|.....
T Consensus 92 vv~~i~G~---------~~~~~ll~~L~~~~~ 114 (116)
T cd02991 92 IVGRLEGL---------IQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEeCC---------CCHHHHHHHHHHHHh
Confidence 22233332 389999999887653
No 157
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.40 E-value=6.2e-06 Score=60.31 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=60.5
Q ss_pred CCCEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------ccHHh
Q 032360 22 EERLVVIRFGH-DWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEV----------------------------PDFNT 71 (142)
Q Consensus 22 ~~k~vvv~F~A-~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~----------------------------~~~~~ 71 (142)
.|++++|.||+ +||+.|....+.+.++++++.. .+.++.|+.|.. .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999995 8899999999999999998864 355555555432 23566
Q ss_pred hcccc------CCcEEEEEecCcEEEEE-eccccccccccccCChhHHHHHHHHHHh
Q 032360 72 MYELY------DPSTVMFFFRNKHIMID-LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 72 ~~~v~------~~Pt~~~~~~g~~v~~~-~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
.|++. ..|+.+++++++.+... .+... .+ .+.+++.+.|+.+-.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~----~~--r~~~e~l~~l~a~~~ 165 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMP----VG--RNVEEVLRLLEAFQF 165 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCC----CC--CCHHHHHHHHHhhhh
Confidence 67764 34677777655554332 22110 01 256677777766543
No 158
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.39 E-value=8.6e-08 Score=71.10 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=67.7
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
.+++.+.+. .-.|+.|+|+|||.|....|.++.++.--.+ .+.+..||+..++.+.-+|-+...||+--.++ +.
T Consensus 31 eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkD-Ge 105 (248)
T KOG0913|consen 31 EENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKD-GE 105 (248)
T ss_pred ccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeec-cc
Confidence 455665552 2468999999999999999999998764222 36777899999999999999999999744444 45
Q ss_pred EEEEeccccccccccccCChhHHHHHHH
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
..+..|.. +.+.+..+++
T Consensus 106 FrrysgaR----------dk~dfisf~~ 123 (248)
T KOG0913|consen 106 FRRYSGAR----------DKNDFISFEE 123 (248)
T ss_pred cccccCcc----------cchhHHHHHH
Confidence 54555544 5556665554
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.38 E-value=2.7e-06 Score=52.98 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=41.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-----cHHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|+++|||+|+...+.|.++... ..++.+|.++.. .+.+..++.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4779999999999999999987553 345556666542 34455677888885 5566554
No 160
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.32 E-value=4.4e-06 Score=53.18 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=50.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc----ccHHhhccc--cCCcEEEEEecCcEEEEEecccccc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYEL--YDPSTVMFFFRNKHIMIDLGTGNNN 100 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~----~~~~~~~~v--~~~Pt~~~~~~g~~v~~~~~~~~~~ 100 (142)
++.|+.+|||.|++....|.++..++. .+.+-.+|++.. .++.+..+- .++|++ |.+|+.+ ||.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~i----gG~--- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKHV----GGC--- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEEe----cCH---
Confidence 567899999999999999998865543 244555777643 246666663 788987 4566554 443
Q ss_pred ccccccCChhHHHHHHHH
Q 032360 101 KINWALKDKQEFIDIVET 118 (142)
Q Consensus 101 ~i~~~~~~~~el~~~i~~ 118 (142)
++|.+++++
T Consensus 72 ---------~dl~~~~~~ 80 (86)
T TIGR02183 72 ---------TDFEQLVKE 80 (86)
T ss_pred ---------HHHHHHHHh
Confidence 777777665
No 161
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.24 E-value=1.2e-05 Score=67.24 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCEE-EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 13 AVDQAILAEEERLV-VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 13 ~~~~~i~~~~~k~v-vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
+..+.+..- ++++ +-.|.++||+.|......+.+++.+.+ ++..-.+|..+.++++++|+|.++|++ +.+|+.+
T Consensus 466 ~~~~~i~~~-~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~--~i~~~~~- 540 (555)
T TIGR03143 466 ELLEKIKKI-TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAI--VVDDQQV- 540 (555)
T ss_pred HHHHHHHhc-CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEE--EECCEEE-
Confidence 333444433 3565 445689999999999999999998865 566667999999999999999999997 4466644
Q ss_pred EEeccccccccccccCChhHHHHHH
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
..|.. +.+++.++|
T Consensus 541 -~~G~~----------~~~~~~~~~ 554 (555)
T TIGR03143 541 -YFGKK----------TIEEMLELI 554 (555)
T ss_pred -EeeCC----------CHHHHHHhh
Confidence 33444 677777665
No 162
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.21 E-value=1.2e-05 Score=48.11 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=39.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHh----hccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT----MYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~----~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|+++||++|+...+.|.+.. +.+..+|++.+++..+ ..+...+|++ |.+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 56789999999999999998653 4555688877665433 3455667765 4566555
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.14 E-value=1.8e-05 Score=46.69 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=39.5
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccH----HhhccccCCcEEEEEecCcE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDF----NTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~----~~~~~v~~~Pt~~~~~~g~~ 89 (142)
++.|+.+|||+|++....|.+ . .+.+-.+|+++.++. .+..+..++|++. .+|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~--i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVF--IDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE--ETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEE--ECCEE
Confidence 577999999999999999843 2 355666888776543 3334889999973 35553
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.12 E-value=2.9e-05 Score=64.42 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEE
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMI 92 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~ 92 (142)
+..+.+.+-.+..-+-.|.+++||+|......+++++...+ ++..-.+|..+.++++++|++.++|++ |.+|+.+
T Consensus 106 ~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~--~i~~~~~-- 180 (517)
T PRK15317 106 EVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTV--FLNGEEF-- 180 (517)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEE--EECCcEE--
Confidence 33344544334445888999999999999999999998754 566667999999999999999999997 3466544
Q ss_pred EeccccccccccccCChhHHHHHHHH
Q 032360 93 DLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
..|.. +.++|.+.+.+
T Consensus 181 ~~g~~----------~~~~~~~~~~~ 196 (517)
T PRK15317 181 GQGRM----------TLEEILAKLDT 196 (517)
T ss_pred EecCC----------CHHHHHHHHhc
Confidence 22333 55566655554
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.11 E-value=6.7e-05 Score=62.80 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=82.0
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe-cCcE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF-RNKH 89 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~-~g~~ 89 (142)
.+++.+.+..-.+...++.|+.+-|..|..+...++++++- .+.+.+...|..++++.++.|++...|++.++. +|..
T Consensus 354 ~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 354 RQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 34566666654555567788888899999999999999864 445666678988899999999999999999985 4544
Q ss_pred EEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCce
Q 032360 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 90 v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~ 129 (142)
..+.+-|. ..-.||..+|+.+++.+..+.++
T Consensus 433 ~~i~f~g~---------P~G~Ef~s~i~~i~~~~~~~~~l 463 (555)
T TIGR03143 433 TGLKFHGV---------PSGHELNSFILALYNAAGPGQPL 463 (555)
T ss_pred cceEEEec---------CccHhHHHHHHHHHHhcCCCCCC
Confidence 43444333 26789999999998877665443
No 166
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.08 E-value=0.00013 Score=50.04 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=83.2
Q ss_pred ccccCCChHHHHHHHHhcCCCEEEEEEeCC--CC-HHH-HHHHHHHHHHHHHhcCC-eEEEEEeCCCcccHHhhcccc--
Q 032360 4 LLPHLHSGWAVDQAILAEEERLVVIRFGHD--WD-ETC-MQMDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELY-- 76 (142)
Q Consensus 4 ~~~~l~s~~~~~~~i~~~~~k~vvv~F~A~--WC-~~C-~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~~~~~~~v~-- 76 (142)
.+.+|++...+++.=.. +...+|-|.-+ -| +.+ ......+.++++++++. +.|+.+|.++...+.+.|++.
T Consensus 3 ~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence 35677877777655432 34666666432 13 234 34678899999999988 788899999999999999995
Q ss_pred CCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCceEECc
Q 032360 77 DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 133 (142)
Q Consensus 77 ~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~ 133 (142)
+.|++.++...+.....+.+. .+.+.+.++++.++.|...+..+...|
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~---------~t~e~i~~Fv~~~l~Gkl~~~~~~~~p 128 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGS---------FSEDGINEFLRELSYGRGPTLPVNGLP 128 (130)
T ss_pred CCCEEEEEecccCccccccCc---------cCHHHHHHHHHHHHcCCcccccCCCCC
Confidence 599998885433222212222 278999999999999887776665554
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.04 E-value=4.8e-05 Score=47.47 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=40.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc---ccHHhhccccCCcEEEEEecCcEE
Q 032360 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV---PDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~---~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
+.-++.|+.+||+.|++....|.+. .+.+-.+|+++. .++.+..+...+|.+ |.+|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQV--FIGGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeE--EECCEEE
Confidence 3456789999999999999999743 244445777655 334455677888886 4566554
No 168
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.04 E-value=4e-05 Score=46.93 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=41.4
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc---cccCCcEEEEEecCcEEEEEeccc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY---ELYDPSTVMFFFRNKHIMIDLGTG 97 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~~~g~~v~~~~~~~ 97 (142)
..|+.+|||.|++....|.+. .+.+-.+|++++++..+.+ +..++|++ +.+|+. .++|-
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v--~~~g~~---~~~G~ 63 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVI--VADGDL---SWSGF 63 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEE--EECCCc---EEecc
Confidence 467889999999999999742 3566668888877665555 66778885 334542 34555
No 169
>PHA03050 glutaredoxin; Provisional
Probab=98.03 E-value=3e-05 Score=51.57 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=40.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC---cc----cHHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE---VP----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~---~~----~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|..+|||.|++....|.+..-+.+ .+-.+|+++ .. ++.+.-+..++|++ |.+|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEE
Confidence 678999999999999999877543221 344567665 22 34555577888986 5666655
No 170
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.96 E-value=9.1e-05 Score=46.65 Aligned_cols=72 Identities=7% Similarity=0.044 Sum_probs=49.4
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHh---hccccCCcEEEEEecCcEEEEEeccccccccc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---MYELYDPSTVMFFFRNKHIMIDLGTGNNNKIN 103 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~---~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~ 103 (142)
+..|..+||++|++.+..|.+ ..+.+-.+|+++.++..+ ..+...+|+++ .++. .++|-
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~--i~~~----~~~Gf------ 64 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVI--AGDL----SWSGF------ 64 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEE--ECCE----EEecC------
Confidence 567889999999999988854 136666789988776443 34667888873 3442 23344
Q ss_pred cccCChhHHHHHHHHHH
Q 032360 104 WALKDKQEFIDIVETVY 120 (142)
Q Consensus 104 ~~~~~~~el~~~i~~~~ 120 (142)
+++++.+++....
T Consensus 65 ----~~~~l~~~~~~~~ 77 (81)
T PRK10329 65 ----RPDMINRLHPAPH 77 (81)
T ss_pred ----CHHHHHHHHHhhh
Confidence 7788887776543
No 171
>PRK10824 glutaredoxin-4; Provisional
Probab=97.95 E-value=4.5e-05 Score=51.31 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCEEEEEEeC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-cccCCcEEE-EEe
Q 032360 12 WAVDQAILAEEERLVVIRFGH----DWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-ELYDPSTVM-FFF 85 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-~v~~~Pt~~-~~~ 85 (142)
..+++.+.+ .+|+|.--. ||||.|++....|.++. +.+..+|+++.+++.+.+ .+.+.||++ +|.
T Consensus 6 ~~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 6 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 345666642 355554333 69999999999998753 233446766666555443 234556655 577
Q ss_pred cCcEE
Q 032360 86 RNKHI 90 (142)
Q Consensus 86 ~g~~v 90 (142)
+|+.+
T Consensus 77 ~G~~I 81 (115)
T PRK10824 77 DGELV 81 (115)
T ss_pred CCEEE
Confidence 88777
No 172
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.95 E-value=8.5e-05 Score=45.47 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc----HHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|+.+||+.|++....|++. .+.+-.+|+++.++ +.+..+-..+|++ |.+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5678899999999999998852 35556678887664 4445566778886 5566655
No 173
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.91 E-value=0.0001 Score=48.21 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=37.5
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc---H----HhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD---F----NTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~---~----~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++-|..+|||.|++....|.+.. +.+..+|+|+.++ + .+..+..++|.+ |.+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 56789999999999999887642 3344566665543 2 222356777885 6667555
No 174
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.88 E-value=0.00047 Score=48.84 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=71.3
Q ss_pred hHHHHHHHHhcCCCE-EEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhcccc--CCcEEEEEec-
Q 032360 11 GWAVDQAILAEEERL-VVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELY--DPSTVMFFFR- 86 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~-vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~~~- 86 (142)
..++.+... .+++ +++.|...-......+...+.++++++.+.+.|+.+|.+..+.+.+.+++. ..|+++++..
T Consensus 84 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~ 161 (184)
T PF13848_consen 84 PENFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSN 161 (184)
T ss_dssp TTHHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETT
T ss_pred hhhHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECC
Confidence 345666553 3555 778887777888899999999999999888899999999999999999998 9999999972
Q ss_pred CcEE-EEEeccccccccccccCChhHHHHHHH
Q 032360 87 NKHI-MIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 87 g~~v-~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
++.. ....+.. +++.+.++|+
T Consensus 162 ~~~~~~~~~~~~----------~~~~i~~Fl~ 183 (184)
T PF13848_consen 162 KGKYYYLPEGEI----------TPESIEKFLN 183 (184)
T ss_dssp TSEEEE--SSCG----------CHHHHHHHHH
T ss_pred CCcEEcCCCCCC----------CHHHHHHHhc
Confidence 3332 2222222 7788887775
No 175
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.86 E-value=0.00021 Score=43.56 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=38.8
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc---HHhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD---FNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~---~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++-|..+|||.|.+....|.+. .+.+..+|+++... +.+..+...+|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 5678999999999998888752 24455577766543 3333577888885 5666654
No 176
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.84 E-value=0.00024 Score=53.37 Aligned_cols=81 Identities=9% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeC------------------------------------
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDI------------------------------------ 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~------------------------------------ 63 (142)
+++.+++.|.=+-||.|+++.+.+.++.+. .+.+.. ..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 478889999999999999999998887541 122211 111
Q ss_pred ------CCcccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 64 ------SEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 64 ------d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+++.+++++++|+++||++ +.+|+.+ .|. .++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~----------~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGY----------QGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCC----------CCHHHHHHHHHHc
Confidence 1122467789999999986 6677655 232 3788998888754
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.84 E-value=0.00025 Score=43.27 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=38.9
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhh----cccc-CCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTM----YELY-DPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~----~~v~-~~Pt~~~~~~g~~v 90 (142)
++.|+.+|||.|++....|.+. .+.+-.+|++..++..+. .+.. ++|++ |.+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 4678999999999999988752 245556788776554443 4555 78875 5566554
No 178
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.84 E-value=0.00014 Score=45.10 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=38.3
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhh----ccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTM----YELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~----~~v~~~Pt~~~~~~g~~v 90 (142)
++.|+.+|||.|+.....|.+. .+.+-.+|++..++..+. .+..++|++ |.+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 3568899999999999999753 244455677766544333 466788885 5566544
No 179
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.81 E-value=0.00019 Score=46.74 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCEEEEEEe----CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhh----ccccCCcEEEE
Q 032360 12 WAVDQAILAEEERLVVIRFG----HDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTM----YELYDPSTVMF 83 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~----A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~----~~v~~~Pt~~~ 83 (142)
+.+++.+. +..|+|+-. ++|||.|++....|.+.. +.+..+|++++++..+. .+...+|.+
T Consensus 3 ~~v~~~i~---~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~v-- 71 (97)
T TIGR00365 3 ERIKEQIK---ENPVVLYMKGTPQFPQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQL-- 71 (97)
T ss_pred HHHHHHhc---cCCEEEEEccCCCCCCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEE--
Confidence 34555553 235555443 499999999999987642 44556788776654433 345566764
Q ss_pred EecCcEE
Q 032360 84 FFRNKHI 90 (142)
Q Consensus 84 ~~~g~~v 90 (142)
|.+|+.+
T Consensus 72 fi~g~~i 78 (97)
T TIGR00365 72 YVKGEFV 78 (97)
T ss_pred EECCEEE
Confidence 5666655
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.79 E-value=0.00027 Score=58.65 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 14 VDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 14 ~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
..+.+.+-.+..-+-.|.++.||+|......+.+++.+.+ ++..-.+|..+.++++++|++.++|+++ .+|+.+
T Consensus 108 ~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~--i~~~~~ 181 (515)
T TIGR03140 108 IIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVF--LNGEEF 181 (515)
T ss_pred HHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEE--ECCcEE
Confidence 3344444334455888999999999999999999988765 5666669999999999999999999973 356544
No 181
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.72 E-value=0.00038 Score=49.22 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVI 58 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~ 58 (142)
.+++.|+.|+-..||+|+.+.+.+.++.+++++.+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 4688999999999999999999999998877655443
No 182
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.70 E-value=0.00027 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.4
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHH
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSS 47 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~ 47 (142)
.++..++.|+-+.||+|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36889999999999999999998876
No 183
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.63 E-value=0.001 Score=42.55 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=63.1
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
..+++..+++..+. .+++++|-|+.++|+ .....+.++++.+.+.+.|+.++ ++++++.+.+.. |++.+|+
T Consensus 2 ~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 35777888887654 467899999999998 46778888888876556666555 346777777754 7788886
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHH
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~ 117 (142)
+...-...+.|. .+.++|.++|.
T Consensus 73 ~~~~~~~~y~g~---------~~~~~l~~fi~ 95 (97)
T cd02981 73 PFEEEPVEYDGE---------FTEESLVEFIK 95 (97)
T ss_pred CcccCCccCCCC---------CCHHHHHHHHH
Confidence 543222333332 14577777764
No 184
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.57 E-value=0.00068 Score=43.36 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=38.3
Q ss_pred CEEEEEEe----CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHh----hccccCCcEEEEEecCcEE
Q 032360 24 RLVVIRFG----HDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT----MYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~----A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~----~~~v~~~Pt~~~~~~g~~v 90 (142)
.+|+|.-. ++|||.|++....|.+.. +.+-.+|+++.+++.+ ..+-.++|.+ |.+|+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 45555433 379999999999987642 4455577766665433 3466778885 5566654
No 185
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.53 E-value=0.00062 Score=50.05 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEE
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIY 59 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~ 59 (142)
+++.||.|+.-.||+|..+.+.+ ..+.+.+++++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~ 76 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMT 76 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEE
Confidence 67889999999999999999876 77777776554443
No 186
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.50 E-value=0.00063 Score=42.64 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=41.3
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeCCCc------------------------------ccHHhhcc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDISEV------------------------------PDFNTMYE 74 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~d~~------------------------------~~~~~~~~ 74 (142)
+..|+.++||.|..+.+.+.++.....+++.+.. +..... ...+..++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999998755555555444 333322 13456788
Q ss_pred ccCCcEEEEE
Q 032360 75 LYDPSTVMFF 84 (142)
Q Consensus 75 v~~~Pt~~~~ 84 (142)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999998554
No 187
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0018 Score=45.79 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred cCCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 032360 21 EEERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE 65 (142)
Q Consensus 21 ~~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~ 65 (142)
..|++|||+|| ..|+|.|-.++-.|.+...++.. ...++.|..|.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 46889999999 69999999999999998888764 45566666554
No 188
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.44 E-value=0.0021 Score=48.75 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHH
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAE 50 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~ 50 (142)
+++.+++.|.=+-||.|+++.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 46778999999999999999998877654
No 189
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0016 Score=55.31 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCcccHHhhcc--------ccCCcE
Q 032360 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEV-L--SSVAETIKNFAVIYLVDISEVPDFNTMYE--------LYDPST 80 (142)
Q Consensus 12 ~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~-l--~~l~~~~~~~~~~~~vd~d~~~~~~~~~~--------v~~~Pt 80 (142)
+.|+.+- .++|||+|..+.+||-=|+.|... | .++++-.+.+.+-++||.++-|++.+.|. -.+.|-
T Consensus 34 eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 34 EAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 4555543 468999999999999999999864 3 34666665567888899999999888775 468898
Q ss_pred EEEEe-cCcEE
Q 032360 81 VMFFF-RNKHI 90 (142)
Q Consensus 81 ~~~~~-~g~~v 90 (142)
.+|.- +|+.+
T Consensus 112 tVfLTPd~kPF 122 (667)
T COG1331 112 TVFLTPDGKPF 122 (667)
T ss_pred eEEECCCCcee
Confidence 87774 44444
No 190
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0013 Score=51.16 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=62.3
Q ss_pred CEEEEEEeC----CCCHHHHHHHHHHHHHHHHhcC--------CeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 24 RLVVIRFGH----DWDETCMQMDEVLSSVAETIKN--------FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 24 k~vvv~F~A----~WC~~C~~~~p~l~~l~~~~~~--------~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
--++|.|.| .-|.-|+....++.-+++.+.. .+-|+.||.++.+++-+.+++++.|++..|...+.-.
T Consensus 61 ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~ 140 (331)
T KOG2603|consen 61 YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNK 140 (331)
T ss_pred eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCcccc
Confidence 346778887 4599999999999999886521 1234559999999999999999999999994433222
Q ss_pred EEeccccccccccccCChhHHHHHHHHH
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
.+.+..+..+... .++++.++++..
T Consensus 141 ~~s~~~d~~~~g~---~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 141 KRSDQMDQQDLGF---EAEQIAQFVADR 165 (331)
T ss_pred ccCccchhhhcch---hHHHHHHHHHHh
Confidence 2222222222221 356666666554
No 191
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.41 E-value=0.0018 Score=40.55 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=43.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~ 81 (142)
++.|+.+.|+-|......+.++..+.+ +.+-.||+++++++..+|+. .+|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEE
Confidence 678899999999999999998766533 67778999999999999996 78885
No 192
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.0022 Score=47.05 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=71.0
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEe
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
.+|+...-..++....+|-.|+|+.|...-|-|+-+...|+.++-.|+ .+.|+.+-...+ ...|--...||+++|.
T Consensus 94 ~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 94 FPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLLVYH 169 (240)
T ss_pred eeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEEEee
Confidence 445545445666666778999999999999999999999999999997 578887433322 1234456789999997
Q ss_pred cCcEEEE-----EeccccccccccccCChhHHHHHHHHH
Q 032360 86 RNKHIMI-----DLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~g~~v~~-----~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
.|..... .+||.+ .+.+++..++-+.
T Consensus 170 ~G~lk~q~igll~lgG~n--------~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 170 HGALKKQMIGLLELGGMN--------LTMEDVEDFLVQA 200 (240)
T ss_pred cchHHhheehhhhhcCCc--------CCHHHHHHHHHhc
Confidence 7754322 344442 1667777666543
No 193
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.38 E-value=0.00074 Score=49.99 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=69.7
Q ss_pred ccccCCChHHHHHHHHhc-CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEE
Q 032360 4 LLPHLHSGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 4 ~~~~l~s~~~~~~~i~~~-~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
.+-++.++.+|-+.+... ..-.++|..|-+--+-|.++...+.=|+.+|+ .+.|+++-... .....+|..+++||++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~-~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSN-TGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecc-ccchhhhcccCCceEE
Confidence 356788888888888754 45678999999999999999999999999998 46777766543 3567889999999999
Q ss_pred EEecCcEE
Q 032360 83 FFFRNKHI 90 (142)
Q Consensus 83 ~~~~g~~v 90 (142)
+|++|..+
T Consensus 217 iYkgGeLI 224 (273)
T KOG3171|consen 217 IYKGGELI 224 (273)
T ss_pred EeeCCchh
Confidence 99988776
No 194
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.36 E-value=0.0056 Score=48.38 Aligned_cols=98 Identities=11% Similarity=0.186 Sum_probs=66.2
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHH-----HHHHHHHHHHHh-c-CCeEEEEEeCCCcccHHhhccccCCcEEEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQ-----MDEVLSSVAETI-K-NFAVIYLVDISEVPDFNTMYELYDPSTVMF 83 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~-----~~p~l~~l~~~~-~-~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 83 (142)
..++.+++.+ ...++|.|+.+--..=-. |...+-+|+++. . ..+.|+.||..+...+++++|+...+++.+
T Consensus 41 eKNfk~~lKk--yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyV 118 (383)
T PF01216_consen 41 EKNFKRALKK--YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYV 118 (383)
T ss_dssp TTTHHHHHHH---SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEE
T ss_pred hhHHHHHHHh--hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEE
Confidence 5578888764 478899999876322211 233344554433 2 257888899999999999999999999999
Q ss_pred EecCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 84 ~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
|++|..+... |.. +++-|.++|-.++.
T Consensus 119 fkd~~~IEyd-G~~----------saDtLVeFl~dl~e 145 (383)
T PF01216_consen 119 FKDGEVIEYD-GER----------SADTLVEFLLDLLE 145 (383)
T ss_dssp EETTEEEEE--S------------SHHHHHHHHHHHHS
T ss_pred EECCcEEEec-Ccc----------CHHHHHHHHHHhcc
Confidence 9988887433 544 88999998887764
No 195
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.28 E-value=0.00057 Score=45.36 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHH---HHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecC
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDET---CMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 87 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~---C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 87 (142)
..+++..+.. +...++.|. .-|.. |....=++-+|.+.+++......++.+...++...|++...|+++||++|
T Consensus 16 ~~~ld~~l~~--~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 16 ADTLDAFLAA--PGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp CCCHHHHHHC--CSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred hhhHHHHHhC--CCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECC
Confidence 3457777653 344555444 44433 33344477788888877667777888888899999999999999999999
Q ss_pred cEEEEE
Q 032360 88 KHIMID 93 (142)
Q Consensus 88 ~~v~~~ 93 (142)
+.+..-
T Consensus 93 ~~lG~i 98 (107)
T PF07449_consen 93 RYLGAI 98 (107)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888543
No 196
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.27 E-value=0.00094 Score=45.73 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=31.8
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVD 62 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd 62 (142)
+++++++.|+-++||+|+.+.|.+.++..+++ ++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEe
Confidence 46889999999999999999999999887765 44444333
No 197
>PTZ00062 glutaredoxin; Provisional
Probab=97.26 E-value=0.0023 Score=47.20 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=37.7
Q ss_pred CEEEEEEe----CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-cccCCcEEE-EEecCcEE
Q 032360 24 RLVVIRFG----HDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-ELYDPSTVM-FFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~----A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-~v~~~Pt~~-~~~~g~~v 90 (142)
.+|+|.-- +||||.|++....|.+. .+.+..+|+++.+++.+.+ ...+.||++ +|.+|+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI 179 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 45555433 37999999999888753 2445567887776654443 233444444 35667665
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=97.21 E-value=0.0024 Score=39.98 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=37.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccH----HhhccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDF----NTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~----~~~~~v~~~Pt~~~~~~g~~v 90 (142)
++.|..+||+.|++....|.+. .+.+..+|+++.++. .+..+...+|++ |.+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5577889999999999998853 244455777766543 344466677865 4455544
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0028 Score=39.74 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=36.9
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-----cHHhhc-cccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-----DFNTMY-ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-----~~~~~~-~v~~~Pt~~~~~~g~~v 90 (142)
++.|..+|||.|++....|.+. .+.+-.+|++... +..+.. +..++|.+ |.+|+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I--~i~~~~i 64 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQI--FIGGKHV 64 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEE--EECCEEE
Confidence 5678899999999999888732 2444445555444 333333 67888885 5666644
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.05 E-value=0.0062 Score=40.51 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=63.5
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHH---hcCCeEEEEEeCCCcccHHhhccccC--CcEEEEEecCc-EEEEEec
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAET---IKNFAVIYLVDISEVPDFNTMYELYD--PSTVMFFFRNK-HIMIDLG 95 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~---~~~~~~~~~vd~d~~~~~~~~~~v~~--~Pt~~~~~~g~-~v~~~~~ 95 (142)
.+.+..+.|+ .-..-....+.+.+++++ +++.+.|+.+|.++.....+.||++. .|.+.+..... .......
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 3455555555 233346788999999999 98888899999999888999999986 89987774322 1111011
Q ss_pred cccccccccccCChhHHHHHHHHHHhh
Q 032360 96 TGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 96 ~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
+. .+++.+.++++..+.|
T Consensus 93 ~~---------~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 93 DV---------YVPGKLKQFVLDLHSG 110 (111)
T ss_pred cc---------cCHHHHHHHHHHHhcC
Confidence 11 2788999999988765
No 201
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0073 Score=39.89 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-cHHhhc----cccCCcEEEEEecC
Q 032360 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMY----ELYDPSTVMFFFRN 87 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~~~~~~----~v~~~Pt~~~~~~g 87 (142)
.+++.+.+ .+ +|-|..+||+.|+++...|.+ +.....++.+|-+++. ++.+.+ +-.++|.+ |.+|
T Consensus 6 ~v~~~i~~---~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~G 75 (104)
T KOG1752|consen 6 KVRKMISE---NP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGG 75 (104)
T ss_pred HHHHHhhc---CC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECC
Confidence 35555542 34 466899999999998888876 3323345556655443 443333 34566764 6777
Q ss_pred cEE
Q 032360 88 KHI 90 (142)
Q Consensus 88 ~~v 90 (142)
+-+
T Consensus 76 k~i 78 (104)
T KOG1752|consen 76 KFI 78 (104)
T ss_pred EEE
Confidence 776
No 202
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.86 E-value=0.0098 Score=44.73 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~ 60 (142)
..++|+||+|++-.|||=+.-.+.++++.++|.+.+.|..
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~ 139 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLI 139 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheeh
Confidence 3589999999999999999999999999999986444444
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.86 E-value=0.0078 Score=48.83 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=39.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHh---h---------ccccCCcEEEEEecCcEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNT---M---------YELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~---~---------~~v~~~Pt~~~~~~g~~v 90 (142)
|+-|..+|||+|++....|.+. .+.+-.+|+++.++..+ . .+..++|++ |.+|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~i--fi~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQI--FVGDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeE--EECCEEE
Confidence 6788999999999999888763 35566688887664222 2 356788986 4456533
No 204
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.64 E-value=0.011 Score=41.00 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEEeC
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETI--KNFAVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~--~~~~~~~~vd~ 63 (142)
..+++|+.|+..-||+|+.+.+.+.++.+++ ++.+.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4688999999999999999999999999988 66676666654
No 205
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.44 E-value=0.035 Score=36.95 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEEEeCCCcccHHhhccccC----CcEEEEEecCcEEEEEeccccccccccccC-Ch
Q 032360 36 ETCMQMDEVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALK-DK 109 (142)
Q Consensus 36 ~~C~~~~p~l~~l~~~~~-~~~~~~~vd~d~~~~~~~~~~v~~----~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~-~~ 109 (142)
..-......+.+++++++ +.+.|+.+|.++.....+.||+.. .|++.++..+..... ..+. . +.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~-~~~~---------~~t~ 100 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYV-MEEE---------FSDV 100 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccC-CCcc---------cCCH
Confidence 445678899999999999 688889999998888889999974 899888753221111 1111 2 55
Q ss_pred hHHHHHHHHH
Q 032360 110 QEFIDIVETV 119 (142)
Q Consensus 110 ~el~~~i~~~ 119 (142)
+.+.++++..
T Consensus 101 e~i~~F~~~f 110 (111)
T cd03073 101 DALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.09 E-value=0.091 Score=35.67 Aligned_cols=96 Identities=15% Similarity=0.236 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHH-HHhc--CCeEEEEEeCC-----CcccHHhhccc--cCCcE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVA-ETIK--NFAVIYLVDIS-----EVPDFNTMYEL--YDPST 80 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~-~~~~--~~~~~~~vd~d-----~~~~~~~~~~v--~~~Pt 80 (142)
..+|+..+.. .+.++|.|-... |--.-...|.+++ +... ++..+..|.+. +|.+++++|++ ...|.
T Consensus 11 ~~tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 11 ELTFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp TTHHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred ceehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 3468888864 589999996543 3334456677777 3332 24555556653 57889999999 67899
Q ss_pred EEEEecCcEEEEEe--ccccccccccccCChhHHHHHHHHH
Q 032360 81 VMFFFRNKHIMIDL--GTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 81 ~~~~~~g~~v~~~~--~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+.+|..|..-++.+ .+. .+.+.|+.++.+.
T Consensus 87 ~~LF~~~~~~pv~~p~~~~---------~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 87 IYLFVGDKEEPVRYPFDGD---------VTADNLQRFVKSN 118 (126)
T ss_dssp EEEEESSTTSEEEE-TCS----------S-HHHHHHHHHHT
T ss_pred EEEecCCCCCCccCCccCC---------ccHHHHHHHHHhC
Confidence 99998666555555 332 2778888888653
No 207
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.84 E-value=0.028 Score=39.43 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=31.4
Q ss_pred CEEEEEEeCCCCHHHHHH-HHHHHHHHHHhcC-Ce-EEEEEeCCCc
Q 032360 24 RLVVIRFGHDWDETCMQM-DEVLSSVAETIKN-FA-VIYLVDISEV 66 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~-~p~l~~l~~~~~~-~~-~~~~vd~d~~ 66 (142)
..|++.|.+.||+.|..+ .+.|.+..+++.. .+ .++.|..|..
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~ 76 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP 76 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH
Confidence 455556669999999999 9999998888753 34 3555665544
No 208
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.81 E-value=0.082 Score=37.20 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 41 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 41 ~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
....+.++++.+.+.+.|+.++ ++++++.+++.. |++++|+++..-...+.|. ..+.++|.++|...
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~--------~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD--------KFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS--------TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc--------cCCHHHHHHHHHHh
Confidence 4567888999988777888776 566889999988 9999998754433344442 01788999998875
No 209
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.36 E-value=0.42 Score=30.84 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=53.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.+++......-++...++.|..+- ..|..+...++++++-- +.+.+-..+.++ ..|++.+..+|+..
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 345666665444444455555544 99999999999998753 344443333322 35999888776443
Q ss_pred EEEeccccccccccccCChhHHHHHHHHH
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
.+.+-|. ..-.||..+|..+
T Consensus 74 gIrF~Gi---------P~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGI---------PMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEec---------CCchhHHHHHHHh
Confidence 3443333 2568888888765
No 210
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.28 E-value=0.45 Score=39.60 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=64.8
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.+++.+.+..- .++|-+.++.+-|..|..+...++++++.- +.+.+-..+.+ ...|++.+..+|+..
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~ 73 (517)
T PRK15317 7 KTQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDT 73 (517)
T ss_pred HHHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccc
Confidence 34566666543 456666666667999999999999998753 34444332211 236999888777665
Q ss_pred EEEeccccccccccccCChhHHHHHHHHHHhhhhcCCce
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~ 129 (142)
.+.+-|. ..-.||..+|+.+++.+..+.+|
T Consensus 74 ~i~f~g~---------P~g~Ef~s~i~~i~~~~~~~~~l 103 (517)
T PRK15317 74 GVRFAGI---------PMGHEFTSLVLALLQVGGHPPKL 103 (517)
T ss_pred eEEEEec---------CccHHHHHHHHHHHHhcCCCCCC
Confidence 5555444 26789999999998877665544
No 211
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.26 E-value=0.2 Score=35.10 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEeCC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHH----hhccc----cCCcEEEEEecCcEE
Q 032360 27 VIRFGHD------WDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFN----TMYEL----YDPSTVMFFFRNKHI 90 (142)
Q Consensus 27 vv~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~----~~~~v----~~~Pt~~~~~~g~~v 90 (142)
|+.|.++ ||+.|++....|.++ .+.+-.+|++..+++. +..+- ..+|.+ |.+|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCEEE
Confidence 3455666 999999999999763 2555668887765543 33333 456664 5666555
No 212
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.23 E-value=0.51 Score=39.33 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.+++.+.+..- .++|-+.++.+-|..|..+...++++++.- +.+.+...+.+. ...|++.++.+|+..
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 7 LAQLKSYLASL-ENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 34566666543 456655555556999999999999998753 345443333222 245999888766655
Q ss_pred EEEeccccccccccccCChhHHHHHHHHHHhhhhcCCce
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 129 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~ 129 (142)
.+.+-|. ..-.||..+|+.+++.+..+.+|
T Consensus 75 ~i~f~g~---------P~g~Ef~s~i~~i~~~~~~~~~l 104 (515)
T TIGR03140 75 GIRFAGI---------PGGHEFTSLVLAILQVGGHGPKL 104 (515)
T ss_pred ceEEEec---------CCcHHHHHHHHHHHHhcCCCCCC
Confidence 4444443 26789999999998877665544
No 213
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.05 E-value=0.31 Score=30.02 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=44.8
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEeCCCcccHHhhccccCCcEEE
Q 032360 26 VVIRFGHDWDETCMQMDEVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 26 vvv~F~A~WC~~C~~~~p~l~~l~~~~~-~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
++.-|-|...+-.+.....+.++.+++. +...+-.||+.+++++++.++|-.+||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 4455556666888888888888877663 34566679999999999999999999964
No 214
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.93 E-value=0.12 Score=34.66 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=27.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 032360 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIK 53 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~ 53 (142)
|.+++-|+-|-|+-|+.....+.++..+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999998885
No 215
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=93.73 E-value=1.3 Score=29.25 Aligned_cols=83 Identities=10% Similarity=0.191 Sum_probs=56.5
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--cccHHhhcccc----CC
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELY----DP 78 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~~~~~~~~~v~----~~ 78 (142)
+-.+++-.+|..++... .-|+|-|..+- ..-......+.++++...+.-.+..||+.+ .+.+++.+.|. --
T Consensus 3 ie~i~d~KdfKKLLRTr--~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 3 IEDISDHKDFKKLLRTR--NNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccccchHHHHHHHhhc--CcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 34677788899998864 34666666553 334445568888898888877788888876 67799999887 55
Q ss_pred cEEEEEecCcEE
Q 032360 79 STVMFFFRNKHI 90 (142)
Q Consensus 79 Pt~~~~~~g~~v 90 (142)
|..+.-+.++..
T Consensus 80 ~~~LkHYKdG~f 91 (112)
T cd03067 80 PVELKHYKDGDF 91 (112)
T ss_pred cchhhcccCCCc
Confidence 544433333433
No 216
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.56 E-value=0.042 Score=35.83 Aligned_cols=33 Identities=12% Similarity=-0.047 Sum_probs=23.7
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
..|+.++|+.|++....|.+. .+.+-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 468899999999998887752 244555666553
No 217
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.54 E-value=1.3 Score=28.72 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=46.8
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
...+.+..++++.+. .++.++|-|+.+--. .....+.++++.+..+..|+.... .++.+.+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEEE
Confidence 356788888988775 356677777666444 366777788887754566654332 356778888 5677777
Q ss_pred e
Q 032360 85 F 85 (142)
Q Consensus 85 ~ 85 (142)
+
T Consensus 72 ~ 72 (104)
T cd03069 72 R 72 (104)
T ss_pred e
Confidence 3
No 218
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=93.53 E-value=1.3 Score=28.59 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
...+++..+++.++.. .+..++|-|+.+--. .....|.++++.+..+..|+... ..++.+.+++. .|++.++
T Consensus 2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 3567888889888741 245666666665444 35567788888775456664422 22456677765 5777777
Q ss_pred ecCcEEEEEe-ccccccccccccCChhHHHHHHHHH
Q 032360 85 FRNKHIMIDL-GTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 85 ~~g~~v~~~~-~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
++...-...+ +|. .+.++|.++|...
T Consensus 74 ~~~~e~~~~y~~g~---------~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKP---------YSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCC---------CCHHHHHHHHHHh
Confidence 5522222334 433 2778888888653
No 219
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=93.40 E-value=0.24 Score=37.64 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=27.4
Q ss_pred cCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 032360 21 EEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~ 54 (142)
..||+.++..++.|||.|...+=.|-..-.+|.+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 4689999999999999999988655555556764
No 220
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.36 E-value=0.58 Score=30.78 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEeCCCcccHHhhccccCCcEEE
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETI-KNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~-~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
+..++=-|.|.--+..+.....+.++.+++ .+...+-.||+.+++++++.++|-.+||++
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLA 65 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHh
Confidence 456666778888899999888888887755 445555569999999999999999999963
No 221
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.34 E-value=0.65 Score=29.62 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEeCCCcccHHhhccccCCcEEE
Q 032360 25 LVVIRFGHDWDETCMQMDEVLSSVAETI-KNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 25 ~vvv~F~A~WC~~C~~~~p~l~~l~~~~-~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
.++=-|.|.--+.++.....+.++.+++ .+...+-.||+.+++++++.++|-.+||++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 4555677888888888888888887655 445555569999999999999999999964
No 222
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=92.29 E-value=0.053 Score=42.27 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE-eCCCcccHHhhccccCCcEEEEE
Q 032360 15 DQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLV-DISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 15 ~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~v-d~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
..++..++.-.|-+.||++|||--+...|.+.-...-+. .+..+.+ +....++....+++.+.|+.++.
T Consensus 68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~ 137 (319)
T KOG2640|consen 68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPSVFSSYGIHSEPSNLML 137 (319)
T ss_pred HHhhccccCCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcccchhccccccCCcceee
Confidence 334444456689999999999999999998877666654 2333333 34456678889999999998766
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.24 E-value=0.08 Score=35.06 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=34.9
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc----cHHhhccccCCcEEEEEecCcEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~----~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.-|+.++|+.|++....|++- .+.+-.+|+.+.+ ++.+-.+..+.|.--++...+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~ 62 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS 62 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch
Confidence 457899999999998888652 3455557765543 33443444455655555444443
No 224
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=91.18 E-value=0.45 Score=28.36 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=32.5
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC-cccHHhhccccCCcEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYELYDPSTV 81 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~-~~~~~~~~~v~~~Pt~ 81 (142)
+.|+.+||+.|++..-.+.+..-. .....+|... .+++.+......+|++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~----~e~~~v~~~~~~~~~~~~np~~~vP~L 52 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT----VELREVELKNKPAEMLAASPKGTVPVL 52 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC----cEEEEeCCCCCCHHHHHHCCCCCCCEE
Confidence 346789999999988777654322 3344555543 3456666667788886
No 225
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=1.3 Score=29.12 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCEEEEEE-e---CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-cccCCcEEE-EEec
Q 032360 13 AVDQAILAEEERLVVIRF-G---HDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-ELYDPSTVM-FFFR 86 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F-~---A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-~v~~~Pt~~-~~~~ 86 (142)
.+++.+. +.+|+++. + .|-||-..+...+|.... .+.+..+|+=+++++.+.. .....||++ +|.+
T Consensus 7 ~I~~~i~---~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g-----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 7 RIQKQIK---ENPVVLFMKGTPEFPQCGFSAQAVQILSACG-----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred HHHHHhh---cCceEEEecCCCCCCCCCccHHHHHHHHHcC-----CcceeEEeeccCHHHHhccHhhcCCCCCceeeEC
Confidence 3455554 34555544 3 466777776666665432 2567779998888888776 457889988 6677
Q ss_pred CcEE
Q 032360 87 NKHI 90 (142)
Q Consensus 87 g~~v 90 (142)
|+-+
T Consensus 79 GEfv 82 (105)
T COG0278 79 GEFV 82 (105)
T ss_pred CEEe
Confidence 7666
No 226
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=90.33 E-value=0.41 Score=28.30 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=31.9
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC----CcccHHhhccccCCcEEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d----~~~~~~~~~~v~~~Pt~~ 82 (142)
.|+.+||+.|++..-.+....-.+ ....+|.. ..+++.+......+|++.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~----~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDV----PLVTVDLAAGEQRSPEFLAKNPAGTVPVLE 56 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCc----eEEEeecccCccCCHHHHhhCCCCCCCEEE
Confidence 577889999999998887653222 23345542 233456656667788863
No 227
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=90.26 E-value=1.2 Score=30.50 Aligned_cols=106 Identities=10% Similarity=0.144 Sum_probs=50.6
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHH--HHHHHHH-HHHHhcCCeEEEE----EeCCCcccHHhhc-c-c
Q 032360 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQ--MDEVLSS-VAETIKNFAVIYL----VDISEVPDFNTMY-E-L 75 (142)
Q Consensus 5 ~~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~--~~p~l~~-l~~~~~~~~~~~~----vd~d~~~~~~~~~-~-v 75 (142)
..+|++.+++++++.+.+| .++|.. -|-|| |.. .+|.... +....+.+ .++. .|.+......+.| + -
T Consensus 18 f~eL~T~e~Vd~~~~~~~G-TtlVvV-NSVCG-CAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~~p 93 (136)
T PF06491_consen 18 FEELTTAEEVDEALKNKEG-TTLVVV-NSVCG-CAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEPYP 93 (136)
T ss_dssp -EE--SHHHHHHHHHH--S-EEEEEE-E-SSH-HHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTTS-
T ss_pred ccccCCHHHHHHHHhCCCC-cEEEEE-ecccc-ccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCCCC
Confidence 4578899999999985444 333333 35687 443 4565543 33222212 2222 3433333333333 1 2
Q ss_pred cCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 76 YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 76 ~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
-+-|++-+|++|+.+...- +-.|-| .+++++.+-|...+
T Consensus 94 PSSPS~ALfKdGelvh~ie----Rh~IEG--r~a~~Ia~~L~~af 132 (136)
T PF06491_consen 94 PSSPSIALFKDGELVHFIE----RHHIEG--RPAEEIAENLQDAF 132 (136)
T ss_dssp --SSEEEEEETTEEEEEE-----GGGTTT--S-HHHHHHHHHHHH
T ss_pred CCCchheeeeCCEEEEEee----hhhcCC--CCHHHHHHHHHHHH
Confidence 4668899999999875421 111222 16677766666554
No 228
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=90.03 E-value=0.47 Score=27.06 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=30.2
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc--cHHhhccccCCcEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP--DFNTMYELYDPSTV 81 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~--~~~~~~~v~~~Pt~ 81 (142)
.|+.++|+.|++..-.+....-. .....++.+... ++.+......+|++
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l 53 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP----YELVPVDLGEGEQEEFLALNPLGKVPVL 53 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEeCCCCCCCHHHHhcCCCCCCCEE
Confidence 46788999999988887765322 233335443322 24555566777875
No 229
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.01 E-value=2 Score=25.31 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=31.3
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC-cccHHhhccccCCcEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYELYDPSTV 81 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~-~~~~~~~~~v~~~Pt~ 81 (142)
..|+.++|+.|++..-.+....-.+ ....+|... .+++.+......+|++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~vP~l 52 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV----EIIDVDPDNPPEDLAELNPYGTVPTL 52 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc----EEEEcCCCCCCHHHHhhCCCCCCCEE
Confidence 4577899999999988876543222 223355443 2355565566778865
No 230
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=90.00 E-value=0.9 Score=26.92 Aligned_cols=49 Identities=4% Similarity=-0.027 Sum_probs=27.1
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~ 81 (142)
-++.++|+.|++.+-.+....-.| ....+|.++.....+..+-..+|++
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~----~~~~~~~~~~~~~~~~~~~~~vP~L 51 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV----EQIILQNDDEATPIRMIGAKQVPIL 51 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe----EEEECCCCchHHHHHhcCCCccCEE
Confidence 467889999999888776542222 2223443332222333334566775
No 231
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=89.81 E-value=3.7 Score=31.51 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCCEEEEEEeCCCCHH-HHHHHHHHHHHHHHhcC---C---eEEEEEeC
Q 032360 22 EERLVVIRFGHDWDET-CMQMDEVLSSVAETIKN---F---AVIYLVDI 63 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~-C~~~~p~l~~l~~~~~~---~---~~~~~vd~ 63 (142)
.||.++++|+-+.||. |-.+...+.++-++.+. . .+|+.||-
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 4899999999999964 66555444444333221 1 25666885
No 232
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=89.32 E-value=6.6 Score=32.31 Aligned_cols=98 Identities=14% Similarity=0.336 Sum_probs=59.2
Q ss_pred HHHHHHh-cCCCEEEEEEeCCCCHHHHHHHHH-HHH--HHHHhcCCeEEEEEeCC--CcccHHhhccccCCcEEEEE-ec
Q 032360 14 VDQAILA-EEERLVVIRFGHDWDETCMQMDEV-LSS--VAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFF-FR 86 (142)
Q Consensus 14 ~~~~i~~-~~~k~vvv~F~A~WC~~C~~~~p~-l~~--l~~~~~~~~~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~-~~ 86 (142)
+-++|.. ...+.++|.|-+.-......|... +.+ ..+.....++.++|+.. ....+.+.|.+-.+|.+.|+ ..
T Consensus 8 ipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~s 87 (506)
T KOG2507|consen 8 IPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFS 87 (506)
T ss_pred hHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCC
Confidence 3344443 235667777776666666666532 211 12222223344445543 34568888899999998777 55
Q ss_pred CcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 87 g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
|..+.+..|-. ..++|...|++++.
T Consensus 88 GtpLevitg~v----------~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 88 GTPLEVITGFV----------TADELASSIEKVWL 112 (506)
T ss_pred CceeEEeeccc----------cHHHHHHHHHHHHH
Confidence 77776655544 78999999988654
No 233
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=89.25 E-value=1 Score=33.94 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=39.6
Q ss_pred HHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC----CeEEEEEeCCCc
Q 032360 17 AILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN----FAVIYLVDISEV 66 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~----~~~~~~vd~d~~ 66 (142)
.+.+..|+++||-+-..+|..|..-+..|+.|..++.+ ++.|+.||-...
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 45556799999999999999999999999888866532 577888885443
No 234
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.22 E-value=0.84 Score=27.73 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=28.2
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc----ccHHhhccccCCcEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV----PDFNTMYELYDPSTV 81 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~----~~~~~~~~v~~~Pt~ 81 (142)
..++.++|+.|++..-.+.+.. +.+-.++++.. +++.+...-..+|++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l 54 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYL 54 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEE
Confidence 4566789999999887776542 22222444332 234444445677875
No 235
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.07 E-value=2 Score=30.64 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=30.6
Q ss_pred cCCCEEEEEEeCCCC-HHHHHHHHHHHHHHHHhc---CCeEEEEEeCC
Q 032360 21 EEERLVVIRFGHDWD-ETCMQMDEVLSSVAETIK---NFAVIYLVDIS 64 (142)
Q Consensus 21 ~~~k~vvv~F~A~WC-~~C~~~~p~l~~l~~~~~---~~~~~~~vd~d 64 (142)
-.||+++|.|.-+.| ..|-.+...+.++.+.+. ..+.++.|.+|
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 368999999999999 679888777777766543 24555555544
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.89 E-value=1.3 Score=29.32 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=25.1
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP 67 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~ 67 (142)
.-|+.++|+.|++....|.+- .+.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 357899999999998888751 3455667876654
No 237
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.87 E-value=1.2 Score=30.52 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHH
Q 032360 69 FNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
Q Consensus 69 ~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~ 118 (142)
.+...+|.++||+++ +|+.+ .+.. +.++|.++|++
T Consensus 128 ~~~~~~i~~tPt~~i--nG~~~---~~~~----------~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLGITGTPTFFI--NGKYV---VGPY----------TIEELKELIDK 162 (162)
T ss_dssp HHHHHT-SSSSEEEE--TTCEE---ETTT----------SHHHHHHHHHH
T ss_pred HHHHcCCccccEEEE--CCEEe---CCCC----------CHHHHHHHHcC
Confidence 456789999999744 77775 2223 88999988875
No 238
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.61 E-value=1.5 Score=29.84 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=24.1
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP 67 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~ 67 (142)
+..|+.+||+.|++....|.+- .+.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4567899999999988777542 2445556665543
No 239
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.52 E-value=0.67 Score=30.38 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=23.5
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
..|+.+||+.|++....|.+- .+.+-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999988887652 244555666544
No 240
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.05 E-value=4.7 Score=24.13 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=44.0
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC-cccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCC
Q 032360 30 FGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE-VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKD 108 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~ 108 (142)
++.++|+.|++..=.+....- ...+..++..+ ..++.+...-..+|++. .+|..+. +
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~----------------d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT----------------D 59 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE----------------S
T ss_pred CCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe----------------C
Confidence 678999999998877754321 13344466554 34566666778889974 5555442 3
Q ss_pred hhHHHHHHHHHHh
Q 032360 109 KQEFIDIVETVYR 121 (142)
Q Consensus 109 ~~el~~~i~~~~~ 121 (142)
-..+.+.|++...
T Consensus 60 S~~I~~yL~~~~~ 72 (75)
T PF13417_consen 60 SAAIIEYLEERYP 72 (75)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcC
Confidence 4566667766543
No 241
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=86.68 E-value=1.1 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEeCCCcccHHhhccccCCcEE
Q 032360 30 FGHDWDETCMQMDEVLSSVAETIK-NFAVIYLVDISEVPDFNTMYELYDPSTV 81 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~~~-~~~~~~~vd~d~~~~~~~~~~v~~~Pt~ 81 (142)
|=|.--+..+.....+..+.+++- +...+-.||+.+.+++++.++|-.+||+
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtL 55 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTL 55 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceE
Confidence 334555667788888888888753 3566667999999999999999999996
No 242
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.08 E-value=1.8 Score=32.42 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=30.1
Q ss_pred HHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhh
Q 032360 69 FNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
Q Consensus 69 ~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~ 124 (142)
.+++.+|+++|||+| +++.. ..|. .+++.|.+.|++++....
T Consensus 176 ~A~e~gI~gVP~fv~--d~~~~--V~Ga----------q~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGKYA--VSGA----------QPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHCCCccCceEEE--cCcEe--ecCC----------CCHHHHHHHHHHHHhccc
Confidence 466889999999977 33332 1233 388999999999886554
No 243
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.85 E-value=8 Score=25.65 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEec
Q 032360 40 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFR 86 (142)
Q Consensus 40 ~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 86 (142)
.+.+....+.+-....... .++.-+|.+-++|+|..+||+++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555444432211111 33444678889999999999977765
No 244
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=85.57 E-value=4.1 Score=24.36 Aligned_cols=50 Identities=6% Similarity=-0.024 Sum_probs=27.8
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
..|+.++|+.|++.+-.+....-.| .+..+|....+++ +.-+...+|++.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi~y----~~~~~~~~~~~~~-~~~~~~~vP~l~ 52 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGIPY----EVVEVNPVSRKEI-KWSSYKKVPILR 52 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCce----EEEECCchhHHHH-HHhCCCccCEEE
Confidence 4577889999999997776532221 2222333222233 233455677763
No 245
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.57 Score=29.11 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=37.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--Ee-------CCCcc--cHHhhccccCCcEEEEEecCcEE
Q 032360 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VD-------ISEVP--DFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd-------~d~~~--~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
|| +.|+|..||.|......|+++.-.|. .+.+.. .| .|..+ +-++.++--++|.+ +..+|+.+
T Consensus 3 kp--~lfgsn~Cpdca~a~eyl~rl~v~yd-~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~vV 76 (85)
T COG4545 3 KP--KLFGSNLCPDCAPAVEYLERLNVDYD-FVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKVV 76 (85)
T ss_pred Cc--eeeccccCcchHHHHHHHHHcCCCce-eeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcEE
Confidence 45 67999999999988888877644332 111110 11 12222 23455666788996 45556655
No 246
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.86 E-value=2.2 Score=30.11 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHH
Q 032360 69 FNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 69 ~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
.+..++|.++||+++ +|+ ....|.. +.++|.+.|
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~----------~~~~l~~~l 192 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGAD----------RLDELEDAL 192 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCS----------SHHHHHHHH
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCC----------CHHHHHHHh
Confidence 456789999999877 666 3334544 666666655
No 247
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=83.55 E-value=3 Score=29.79 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=23.6
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVI 58 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~ 58 (142)
.|.-|+|+-|-...|.+.++..++++.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence 588899999999999999999999876543
No 248
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=82.38 E-value=4.4 Score=29.84 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=26.9
Q ss_pred CCCEEEEEEeCCCC-HHHHHHHHHHHHHHHHhc
Q 032360 22 EERLVVIRFGHDWD-ETCMQMDEVLSSVAETIK 53 (142)
Q Consensus 22 ~~k~vvv~F~A~WC-~~C~~~~p~l~~l~~~~~ 53 (142)
+|++++|.|.=+.| .-|-.+...+.++.++..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~ 98 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLG 98 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhc
Confidence 68999999998888 479999988888777665
No 249
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=82.27 E-value=1.3 Score=26.25 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=32.5
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC----cccHHhhccccCCcEEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVM 82 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~----~~~~~~~~~v~~~Pt~~ 82 (142)
..|+.++|+.|++..-.+....-. .....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357889999999888777664332 2333455432 24566666667888873
No 250
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.55 E-value=4.2 Score=27.72 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=23.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
+..|+.++|+.|++....|.+- .+.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4578899999999988777642 234444565443
No 251
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=81.20 E-value=13 Score=25.47 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=20.7
Q ss_pred CCcccHHhhccccCCcEEEEEecCc
Q 032360 64 SEVPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 64 d~~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
.-+|.+-++|+|..+|++++..++.
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCC
Confidence 3467888999999999998887664
No 252
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=80.20 E-value=6.5 Score=25.90 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=23.3
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
..|+.++|+.|++....|.+. .+.+-.+|+.+.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 457889999999988887652 244555676554
No 253
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=79.82 E-value=11 Score=26.77 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=39.1
Q ss_pred HhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEE--EeC------CCcccHHh----hccccCCcEEEEEe
Q 032360 19 LAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYL--VDI------SEVPDFNT----MYELYDPSTVMFFF 85 (142)
Q Consensus 19 ~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~--vd~------d~~~~~~~----~~~v~~~Pt~~~~~ 85 (142)
..-.||+++|.=.||-|+--- .-..|+.|.++|.+. ..+.. +|- ..+.++++ .|+| ||++|.
T Consensus 21 ~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgV----tFp~f~ 95 (162)
T COG0386 21 SDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGV----TFPMFS 95 (162)
T ss_pred HHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCc----eeeeee
Confidence 335799999999999998765 344567778888643 22222 442 22233433 4666 888885
No 254
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=79.39 E-value=5.3 Score=27.83 Aligned_cols=45 Identities=4% Similarity=0.079 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccc
Q 032360 25 LVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL 75 (142)
Q Consensus 25 ~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v 75 (142)
.-++.|+.|.||=|......++. . ...+-.+..++...+.++++|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~-Gf~Vk~~~~~d~~alK~~~gI 70 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N-GFEVKVVETDDFLALKRRLGI 70 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C-CcEEEEeecCcHHHHHHhcCC
Confidence 45788999999999999888862 1 244555777777788888887
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.43 E-value=7.2 Score=26.61 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=23.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
+.-|+.++|+.|++....|.+- .+.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 3467889999999987766541 345555776544
No 256
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=7.6 Score=28.67 Aligned_cols=46 Identities=4% Similarity=0.005 Sum_probs=33.9
Q ss_pred cHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 68 DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
.+.+++++.++||+.+-.+|+.-....|. ++.+++++...+++.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~--------y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGA--------YFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCc--------ccCCcHHHHHHHHHHHh
Confidence 35668899999999888877766554441 24588999988887653
No 257
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=74.48 E-value=11 Score=23.47 Aligned_cols=52 Identities=6% Similarity=-0.016 Sum_probs=31.5
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-ccHHhhccccCCcEEE
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVM 82 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-~~~~~~~~v~~~Pt~~ 82 (142)
+..|+.+.|+.|++..-.+....-. .....+|.... +++.+......+|++.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~----~~~~~v~~~~~~~~~~~~np~~~vPvL~ 71 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP----HEVININLKDKPDWFLEKNPQGKVPALE 71 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC----CeEEEeCCCCCcHHHHhhCCCCCcCEEE
Confidence 3445678899999887777654222 23344555443 3355555567788863
No 258
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.01 E-value=24 Score=26.52 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCEEEEEE----eCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-cccCCcEEE-EEecCcEE
Q 032360 23 ERLVVIRF----GHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-ELYDPSTVM-FFFRNKHI 90 (142)
Q Consensus 23 ~k~vvv~F----~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-~v~~~Pt~~-~~~~g~~v 90 (142)
.++|++.- -.|-||-.++...++... ++.+...|+-.++++.+.. ..+..|||+ +|.+|+-+
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 46766654 357788877777776542 2456668888888777665 356889998 67777665
No 259
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=33 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=32.8
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIKN-FAVIYLVDISE 65 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~ 65 (142)
-+|.+++.|| ++--+.|--+...+.+.+.++.. ++.++.+.+|.
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds 77 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDS 77 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCc
Confidence 3588999888 78888898899999888888754 34555555443
No 260
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.73 E-value=3.4 Score=29.48 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=22.4
Q ss_pred cHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHH
Q 032360 68 DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
+.+...||.++||+++ +|+.. ..|.. +.+.|.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~~--~~G~~----------~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKYA--VSGAQ----------PPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeEe--ecCCC----------CHHHHHHHh
Confidence 3456789999999755 55433 22333 777777765
No 261
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=71.45 E-value=6 Score=26.49 Aligned_cols=34 Identities=6% Similarity=0.160 Sum_probs=21.7
Q ss_pred cHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHH
Q 032360 68 DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
+.+.+++|.++||+++ +|+.+ .|.. +.+.|.+.|
T Consensus 120 ~~~~~~gi~gtPt~~v--~g~~~---~G~~----------~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFII--GDTVI---PGAV----------PADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEE--CCEEe---cCCC----------CHHHHHHHh
Confidence 4566789999999644 45422 2322 667777665
No 262
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.64 E-value=43 Score=25.25 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred CCCEEEEEEeCCCC-HH-HHHHHHHHHHHHHHh----cCCeEEEEEeCCCcccHHhh----ccccCCc
Q 032360 22 EERLVVIRFGHDWD-ET-CMQMDEVLSSVAETI----KNFAVIYLVDISEVPDFNTM----YELYDPS 79 (142)
Q Consensus 22 ~~k~vvv~F~A~WC-~~-C~~~~p~l~~l~~~~----~~~~~~~~vd~d~~~~~~~~----~~v~~~P 79 (142)
=+++|-|.+|.+-- ++ =....+.+.++-++| ++++.+-.+|.+.+++.+++ +|+...+
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 35677777776652 11 233344444443333 33567777999887776665 7876644
No 263
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=67.32 E-value=31 Score=22.36 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=44.4
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEE
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 84 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 84 (142)
..+.+..++++.+.. .++.++|-|+.+--+ .....+.++++.+.++..|..... .++.+.+++.. |.+++|
T Consensus 3 ~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~ 73 (107)
T cd03068 3 KQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVF 73 (107)
T ss_pred eEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEE
Confidence 467788889887753 325666666655433 356677788887755666654332 35667777765 445555
No 264
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.31 E-value=7.9 Score=22.51 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=29.7
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC----cccHHhhccccCCcEEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVM 82 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~----~~~~~~~~~v~~~Pt~~ 82 (142)
.|+.++|+.|++..-.+....-. .....+|... .+++.+......+|++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLE 56 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEE
Confidence 46778999999887777654322 2333455432 23344444556778863
No 265
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=59.93 E-value=20 Score=27.86 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=47.4
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeCCCcccHHhhccccCCcEEEE----------EecCcEEEEEec
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDISEVPDFNTMYELYDPSTVMF----------FFRNKHIMIDLG 95 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~d~~~~~~~~~~v~~~Pt~~~----------~~~g~~v~~~~~ 95 (142)
+.+.-++|..-..=...+.+|+++.+ ..++. -+......|.+--.-.+.||+.+ |.+.+.+.+.-|
T Consensus 185 ~~~~nTIC~AT~~RQ~a~~~la~~vD--~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAG 262 (280)
T TIGR00216 185 VPVFNTICYATQNRQDAVKELAPEVD--LMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAG 262 (280)
T ss_pred CCCCCCcccccHHHHHHHHHHHhhCC--EEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEec
Confidence 45678999999998889999988743 22222 33333333333222234688763 233345555555
Q ss_pred cccccccccccCChhHHHHHHHHHH
Q 032360 96 TGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 96 ~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
.+ +|+.+.+.+...+
T Consensus 263 AS----------TP~~li~eVi~~l 277 (280)
T TIGR00216 263 AS----------TPDWIIEEVIRKI 277 (280)
T ss_pred CC----------CCHHHHHHHHHHH
Confidence 55 7787776655544
No 266
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=59.87 E-value=7.9 Score=27.60 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=14.5
Q ss_pred cHHhhccccCCcEEEEEe
Q 032360 68 DFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~ 85 (142)
.++++++|.+.||++++.
T Consensus 138 ~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 138 QLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHTT-SSSSEEEEE-
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 578899999999999996
No 267
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=59.39 E-value=56 Score=22.52 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=52.1
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCcc------------------cHHhhccccCCcE
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVL---SSVAETIKNFAVIYLVDISEVP------------------DFNTMYELYDPST 80 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~~~------------------~~~~~~~v~~~Pt 80 (142)
+.|+++|+.+.+--..+..+-..+ +.+.+-.+++.++..-|++... ..+..++....|.
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP~ 99 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLPA 99 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCCe
Confidence 579999999998875444332222 1222222335666667765532 1344567899999
Q ss_pred EEEEecC-c--EEEEEeccccccccccccCChhHHHHHHHHHH
Q 032360 81 VMFFFRN-K--HIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 81 ~~~~~~g-~--~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+.+.-.. . .+.....|. .+++++...|.+.+
T Consensus 100 ~avI~~~~~~~~vl~~i~G~---------~~~~ell~~L~~~v 133 (136)
T cd02990 100 ILIIMGKRSSNEVLNVIQGN---------TGVDELLMRLIEAM 133 (136)
T ss_pred EEEEEecCCceEEEEEEECC---------CCHHHHHHHHHHHH
Confidence 8877322 1 232233332 38888888776653
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.01 E-value=7 Score=27.57 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.4
Q ss_pred cHHhhccccCCcEEEEEecCc
Q 032360 68 DFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 68 ~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
..+..++|+++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 345678999999998886655
No 269
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=58.01 E-value=54 Score=21.94 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=61.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCcccHHh----hcccc-CCcEEEEE--ecCcEEEEE
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKN--FAVIYLVDISEVPDFNT----MYELY-DPSTVMFF--FRNKHIMID 93 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~~~~----~~~v~-~~Pt~~~~--~~g~~v~~~ 93 (142)
+...++-|--+-.+.-.++.+.+.++|+++.. ...++.||-|+.+-+.. .|+|. .-|.+=+. .+..-+...
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 45677888888899999999999999998754 35677899999987655 34442 23554444 233444444
Q ss_pred eccccccccccccCChhHHHHHHHHH
Q 032360 94 LGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 94 ~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+.+.. .+.+.++|.+.|+.+
T Consensus 100 m~~~~------d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDE------DLPTAEELEDWIEDV 119 (120)
T ss_pred ccccc------ccCcHHHHHHHHHhh
Confidence 33220 123789999998865
No 270
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.98 E-value=17 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.9
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIK 53 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~ 53 (142)
|..|+=+.||-|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567788999999999999999999884
No 271
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=26 Score=25.86 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=22.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 032360 24 RLVVIRFGHDWDETCMQMDEVLSSVAETIK 53 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~ 53 (142)
+.+++.|.-.-||+|+...|.+.+.....+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 677888888889999888888877555443
No 272
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=56.86 E-value=27 Score=24.05 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=5.2
Q ss_pred CHHHHHHHH
Q 032360 35 DETCMQMDE 43 (142)
Q Consensus 35 C~~C~~~~p 43 (142)
||.||+..-
T Consensus 88 CG~CRQ~i~ 96 (134)
T COG0295 88 CGACRQVLA 96 (134)
T ss_pred cHHHHHHHH
Confidence 666665443
No 273
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.62 E-value=60 Score=26.61 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=51.0
Q ss_pred HHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 14 VDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 14 ~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
+-+.+..-++..-+=-|++=.|-.|-..-+.|.-++-- ..++.-..||-.-.++-.+.-+|.++||+ |.+|+..
T Consensus 107 vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl-Np~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~f 180 (520)
T COG3634 107 VIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL-NPRIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEF 180 (520)
T ss_pred HHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc-CCCceeEEecchhhHhHHHhccceecceE--EEcchhh
Confidence 33344444566666677788899998887777666543 34566667887666666677789999996 6677766
No 274
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=56.54 E-value=40 Score=19.99 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=33.3
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC----cccHHhhccccCCcEEEEEecCcE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE----VPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
..|+.+.|+.|++..-.+.+..-. ..+..+|... .+++.+...-..+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~----~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR----CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC----CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 356778899998887655544322 3344455532 23466666667889873 44543
No 275
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.26 E-value=11 Score=27.80 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHH
Q 032360 24 RLVVIRFGHDWDETCMQMDEVLSSVAE 50 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l~~l~~ 50 (142)
....+.|.-++|+.|++....+....+
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 345667899999999998877766544
No 276
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=55.47 E-value=46 Score=25.88 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=45.5
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeCCCcccHHhhccccCCcEEEEE----------ecCcEEEEEecc
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDISEVPDFNTMYELYDPSTVMFF----------FRNKHIMIDLGT 96 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~d~~~~~~~~~~v~~~Pt~~~~----------~~g~~v~~~~~~ 96 (142)
.+.-++|..-..-.....+|+++.+ ..++. -+......|.+.-.-.+.||+.+= .+.+.+.+.-|.
T Consensus 187 ~v~~TIC~aT~~RQ~a~~~La~~vD--~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGA 264 (281)
T PRK12360 187 VFFNTICSATKKRQESAKELSKEVD--VMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGA 264 (281)
T ss_pred ccCCCcchhhhhHHHHHHHHHHhCC--EEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccC
Confidence 3478999999988888999987643 22222 333333333332222345787532 333445555454
Q ss_pred ccccccccccCChhHHHHHHHHHH
Q 032360 97 GNNNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 97 ~~~~~i~~~~~~~~el~~~i~~~~ 120 (142)
+ +|+.+.+.+...+
T Consensus 265 S----------TP~~li~eV~~~l 278 (281)
T PRK12360 265 S----------TPDWIIEEVIKKI 278 (281)
T ss_pred C----------CCHHHHHHHHHHH
Confidence 4 7777766555443
No 277
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=55.25 E-value=20 Score=23.74 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=22.1
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~ 65 (142)
+.-|+.+.|+.|++....|++- .+.+-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3467889999999888777642 24444466544
No 278
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=8.2 Score=27.89 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=19.9
Q ss_pred CCCEEEEEEe-CCCCHHHHHHHHHHHHHHHHhc
Q 032360 22 EERLVVIRFG-HDWDETCMQMDEVLSSVAETIK 53 (142)
Q Consensus 22 ~~k~vvv~F~-A~WC~~C~~~~p~l~~l~~~~~ 53 (142)
.+++||++|| +...|-|-+..=-|.+=+++++
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~k 121 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFK 121 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHh
Confidence 4568888888 4556777775555555444443
No 279
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=54.96 E-value=15 Score=28.59 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcCCCEEEEEE---eCCCCHHHHHHHHH
Q 032360 11 GWAVDQAILAEEERLVVIRF---GHDWDETCMQMDEV 44 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F---~A~WC~~C~~~~p~ 44 (142)
...+.+.-.+-....+||.| |--||.-|+.+...
T Consensus 28 ~h~lrerarKi~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 28 THALRERARKIDQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred chhHHHHHHhhccceEEEEEecccchhhccHHHhhhc
Confidence 33444433332345788899 66799999987654
No 280
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=54.58 E-value=44 Score=22.03 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=29.2
Q ss_pred hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 032360 20 AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 20 ~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~ 54 (142)
+-+||+++|.=-|+-|+.-. .-..|++|.++|..
T Consensus 18 ~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~ 51 (108)
T PF00255_consen 18 KYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD 51 (108)
T ss_dssp GGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG
T ss_pred HcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc
Confidence 34789999999999999988 66789999999974
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=52.11 E-value=31 Score=24.11 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=25.3
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 032360 26 VVIRFGHDWDETCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 26 vvv~F~A~WC~~C~~~~p~l~~l~~~~~~ 54 (142)
.|..|+-.-||.|-...+.+.++.+.+++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 36778889999999999999999999843
No 282
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.16 E-value=65 Score=20.48 Aligned_cols=36 Identities=14% Similarity=-0.068 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCcccHHhhcccc-----CCcEEE-EEecCcEE
Q 032360 55 FAVIYLVDISEVPDFNTMYELY-----DPSTVM-FFFRNKHI 90 (142)
Q Consensus 55 ~~~~~~vd~d~~~~~~~~~~v~-----~~Pt~~-~~~~g~~v 90 (142)
.+.+-.+|++.+++..+.+.-. +.+|++ +|.++..+
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYC 71 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEe
Confidence 3666679998777655543111 223433 46666666
No 283
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=49.32 E-value=7.4 Score=33.18 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=49.1
Q ss_pred hHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHH-HH--HHHHHhcCCeEEEEEeCCCcccHHhh--------ccccCCc
Q 032360 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEV-LS--SVAETIKNFAVIYLVDISEVPDFNTM--------YELYDPS 79 (142)
Q Consensus 11 ~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~-l~--~l~~~~~~~~~~~~vd~d~~~~~~~~--------~~v~~~P 79 (142)
.+.|+++-. ++||+++...-+.|-=|..|... |+ +.++....+.+-++||.++-+++-+. .+-.+.|
T Consensus 102 qeaf~kar~--enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 102 QEAFNKARA--ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred HHHHHHHHh--cCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 345666543 57999999999999999998753 32 24444443445566899898887663 3445777
Q ss_pred EEEEE
Q 032360 80 TVMFF 84 (142)
Q Consensus 80 t~~~~ 84 (142)
.-+++
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 76665
No 284
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=47.88 E-value=6.3 Score=27.46 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHH
Q 032360 34 WDETCMQMDEVLS 46 (142)
Q Consensus 34 WC~~C~~~~p~l~ 46 (142)
-||+|+++.|.|-
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999999873
No 285
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=47.73 E-value=6.1 Score=27.47 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHH
Q 032360 34 WDETCMQMDEVLS 46 (142)
Q Consensus 34 WC~~C~~~~p~l~ 46 (142)
-||+|+++.|.|-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999873
No 286
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=47.68 E-value=68 Score=25.16 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=49.3
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeCCCcccHHhhccccCCcEEEE----------EecCcEEEEE
Q 032360 26 VVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDISEVPDFNTMYELYDPSTVMF----------FFRNKHIMID 93 (142)
Q Consensus 26 vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~d~~~~~~~~~~v~~~Pt~~~----------~~~g~~v~~~ 93 (142)
+.+.++-++|..-..=.....+|+++.+ ..++. -+......|.+.-.-.+.||+.+ |.+-+.+.+.
T Consensus 185 ~~v~~~nTIC~aT~~RQ~a~~~La~~vD--~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGit 262 (298)
T PRK01045 185 IQGPPKDDICYATQNRQEAVKELAPQAD--LVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVT 262 (298)
T ss_pred cccCCCCCcchhhHHHHHHHHHHHhhCC--EEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEE
Confidence 3444589999999988888889988643 22222 23333333333222234577753 2333455555
Q ss_pred eccccccccccccCChhHHHHHHHHHHhhh
Q 032360 94 LGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 94 ~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
-|.+ +|+.+.+.+...++.-
T Consensus 263 aGAS----------TP~~li~eV~~~l~~~ 282 (298)
T PRK01045 263 AGAS----------APEWLVQEVIARLKEL 282 (298)
T ss_pred ecCC----------CCHHHHHHHHHHHHHh
Confidence 5554 7887777666655544
No 287
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=47.33 E-value=82 Score=20.86 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=46.6
Q ss_pred CCEEEEEEeCC--CCHHHHHHHHHHHHHHHHhcC-CeEEEE-EeCCCcc-----------cHHhhcccc-CCcEEEEE-e
Q 032360 23 ERLVVIRFGHD--WDETCMQMDEVLSSVAETIKN-FAVIYL-VDISEVP-----------DFNTMYELY-DPSTVMFF-F 85 (142)
Q Consensus 23 ~k~vvv~F~A~--WC~~C~~~~p~l~~l~~~~~~-~~~~~~-vd~d~~~-----------~~~~~~~v~-~~Pt~~~~-~ 85 (142)
++++|| +|| --+.-+.....|.+-...+.. +++++. ++..... .+.+.|++. +-.++++. +
T Consensus 10 ~R~lvv--~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGK 87 (118)
T PF13778_consen 10 NRLLVV--FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGK 87 (118)
T ss_pred CceEEE--ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 455544 444 445566666777764444433 344444 4444333 678888864 22344445 4
Q ss_pred cCcEEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 86 ~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
+|+.. ..++.. .+.+++-+.|+..
T Consensus 88 DG~vK-~r~~~p---------~~~~~lf~~ID~M 111 (118)
T PF13778_consen 88 DGGVK-LRWPEP---------IDPEELFDTIDAM 111 (118)
T ss_pred CCcEE-EecCCC---------CCHHHHHHHHhCC
Confidence 45444 333333 2788888888764
No 288
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=45.90 E-value=30 Score=20.27 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=30.0
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC----CcccHHhhccccCCcEE
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTV 81 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d----~~~~~~~~~~v~~~Pt~ 81 (142)
-.|+.+.|+.|++..-.+....-.+ ....+|.. ..+++.+......+|++
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~~----~~~~~~~~~~~~~~~~~~~~~P~~~vP~l 56 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVDY----ELVPVDLTKGEHKSPEHLARNPFGQIPAL 56 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCCc----EEEEeCccccccCCHHHHhhCCCCCCCEE
Confidence 3445666999999888776643322 33334442 12356666666778876
No 289
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.21 E-value=1.2e+02 Score=21.75 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=42.0
Q ss_pred hcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-eEEEE--EeC------CCcccHHhhccccCCcEEEEEe
Q 032360 20 AEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNF-AVIYL--VDI------SEVPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 20 ~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~~~--vd~------d~~~~~~~~~~v~~~Pt~~~~~ 85 (142)
+-.|++++|.=-||-|+--..--..|..|.++|... ..+.. +|- ..+.++..-...+--.++++|.
T Consensus 31 ~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~ 105 (171)
T KOG1651|consen 31 QYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQ 105 (171)
T ss_pred HhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEe
Confidence 347899999999999999987777888898888643 23332 552 3344444433333333445663
No 290
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=42.46 E-value=89 Score=19.86 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-cHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChh
Q 032360 32 HDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ 110 (142)
Q Consensus 32 A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~ 110 (142)
..+|+.|++..=.|....- ...+..+|....+ .+.+..-...+|++. .+|..+. +-.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi----~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~----------------eS~ 76 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV----VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT----------------DNN 76 (91)
T ss_pred CCCChhHHHHHHHHHHCCC----ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec----------------CHH
Confidence 3679999988776654311 1234447765544 466656667888653 3443331 445
Q ss_pred HHHHHHHHHH
Q 032360 111 EFIDIVETVY 120 (142)
Q Consensus 111 el~~~i~~~~ 120 (142)
.+.+.|++..
T Consensus 77 ~I~eYLde~~ 86 (91)
T cd03061 77 KIEEFLEETL 86 (91)
T ss_pred HHHHHHHHHc
Confidence 6666776654
No 291
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=42.34 E-value=19 Score=25.87 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=13.0
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 032360 30 FGHDWDETCMQMDEVLSS 47 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~ 47 (142)
|.+| ||.|+++...+.+
T Consensus 101 f~tP-CG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTP-CGVCRQFLREFGN 117 (173)
T ss_pred cCCC-cHHHHHHHHHHhh
Confidence 5555 9999998877765
No 292
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=42.10 E-value=88 Score=22.45 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-ccHHhhccccCCcEEE
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV-PDFNTMYELYDPSTVM 82 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-~~~~~~~~v~~~Pt~~ 82 (142)
++..+--|+.++|+.|++..=.+....-. .....+|.... +++.+..-...+|++.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~----~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGVS----VEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCCC----CEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 34445556677899999988766654222 33445665433 3566655566778863
No 293
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=50 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=40.4
Q ss_pred EEeCCCcccHHhhccccCCcEEEEE--ecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 60 LVDISEVPDFNTMYELYDPSTVMFF--FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 60 ~vd~d~~~~~~~~~~v~~~Pt~~~~--~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
..|..+...+..-|.+..+|.+.++ ..|+++.+..|.. .+++|..-+++.+..-..
T Consensus 137 ~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi----------~~~~fl~~l~~Fi~~~~~ 194 (356)
T KOG1364|consen 137 LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVI----------EPEQFLSDLNEFIDSCPH 194 (356)
T ss_pred eeccCCCCchhhheeccCCceEEEECCchhhhhhhhcccc----------CHHHHHHHHHHHHhcCCc
Confidence 3666677789999999999977677 3477775544433 688888888887765443
No 294
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.49 E-value=79 Score=23.86 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 35 DETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 35 C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
-.+|..|+..+.+++++++.-++++.-|+. ++..|. -.++.+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDIN----fAS~Ys----D~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDIN----FASCYS----DHIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEeccc----HHHhhh----hheeeecCCEEEe
Confidence 378999999999999999765555555553 333332 1456677777663
No 295
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=40.69 E-value=1.4e+02 Score=24.06 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=44.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHH----HHHHHHhcC-----CeEEEE--EeCCCcccHHhhccccC--CcEEEEEecCcEE
Q 032360 24 RLVVIRFGHDWDETCMQMDEVL----SSVAETIKN-----FAVIYL--VDISEVPDFNTMYELYD--PSTVMFFFRNKHI 90 (142)
Q Consensus 24 k~vvv~F~A~WC~~C~~~~p~l----~~l~~~~~~-----~~~~~~--vd~d~~~~~~~~~~v~~--~Pt~~~~~~g~~v 90 (142)
+..-++|-| ||.|-+..-.+ .++.+.+.. ++.+.. ||---. ..-..+++.+ .|..++|.+|+.+
T Consensus 255 R~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGE-ak~AdiGia~~~~~~~~~f~~g~~~ 331 (361)
T COG0821 255 RSRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGE-AKHADIGIAGGGKGSGPVFVKGEII 331 (361)
T ss_pred cccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcc-hhccceeeecCCCCeeEEEECCeEE
Confidence 334455544 88887754433 334444322 122222 443221 2233456643 5888899988877
Q ss_pred EEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
....+.. =.++|...|++..+
T Consensus 332 ~~~~~~~----------~~eel~~~i~~~~~ 352 (361)
T COG0821 332 KKLPEED----------IVEELEALIEAYAE 352 (361)
T ss_pred EecChhh----------HHHHHHHHHHHHHH
Confidence 5532222 34667777766654
No 296
>COG3411 Ferredoxin [Energy production and conversion]
Probab=39.81 E-value=82 Score=18.86 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=24.5
Q ss_pred CcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhh
Q 032360 78 PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
Q Consensus 78 ~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~ 124 (142)
-|++.+|.+| ..++.. +++....++++++.+.+
T Consensus 17 gPvl~vYpeg----vWY~~V----------~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 17 GPVLVVYPEG----VWYTRV----------DPEDARRIVQSHLLGGR 49 (64)
T ss_pred CCEEEEecCC----eeEecc----------CHHHHHHHHHHHHhCCC
Confidence 4888888776 344555 88999999999887544
No 297
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=39.03 E-value=22 Score=21.42 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=16.1
Q ss_pred EEEEecCcEEEEEeccccccccccccCChhHHHHHH
Q 032360 81 VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
Q Consensus 81 ~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i 116 (142)
|-+..+|+.+.....+. .|.+++++.+.|
T Consensus 43 Fev~~~g~~v~sk~~~~-------~fp~~~~~~~~i 71 (72)
T TIGR02174 43 FEVTVNGQLVWSKLRGG-------GFPEPEELKQLI 71 (72)
T ss_pred EEEEECCEEEEEeccCC-------CCCCHHHHHHhh
Confidence 33445776665543222 355777777765
No 298
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=37.59 E-value=1.7e+02 Score=21.59 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=46.4
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE-EeCCCc----------------ccHHhhccccCCcEEEEEecCcEEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYL-VDISEV----------------PDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~-vd~d~~----------------~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
.|.+.-|..|-.-...|.+|+++ ++.+.+.. ||.-+. ...++.++..++-|=-++.+|..-
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~- 81 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH- 81 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE-
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee-
Confidence 57788999999999999999988 33333333 764321 134556666665554456777765
Q ss_pred EEeccccccccccccCChhHHHHHHHHHHhh
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~ 122 (142)
..|. +..++...|++..+.
T Consensus 82 --~~g~----------~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 82 --RVGS----------DRAAVEAAIQAARAR 100 (202)
T ss_dssp --EETT-----------HHHHHHHHHHHHHT
T ss_pred --eecc----------CHHHHHHHHHHhhcc
Confidence 2344 678888888887655
No 299
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=36.41 E-value=1.8e+02 Score=21.69 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhc-cccCCcEEEEEecCcEE
Q 032360 22 EERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMY-ELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 22 ~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~-~v~~~Pt~~~~~~g~~v 90 (142)
.|+.-+..=||++.|---.|...-..+.++ .-++++..++....++..+.. ++..+|...+.++|...
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~ 71 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTL 71 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEec
Confidence 466766666899999999998888777664 335777778888777655543 67778887777777655
No 300
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.10 E-value=1.4e+02 Score=19.97 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc-cHHhhcc--ccCCcEEEEEecCcEEEEEeccccccccccccCChhH
Q 032360 35 DETCMQMDEVLSSVAETIKNFAVIYLVDISEVP-DFNTMYE--LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQE 111 (142)
Q Consensus 35 C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~~~~~~~--v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~e 111 (142)
|++|..+.-.|...-.- ...+.+..||...-. ++.+..+ -++.|++ ++.+|.......+..+..+. +.+++.
T Consensus 24 Cp~c~~iEGlLa~~P~l-~~~ldV~rV~f~RPR~~vi~llGE~~QslPvL-VL~~~~~~~~~~~~~~~~rf---i~d~~~ 98 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDL-RERLDVRRVDFPRPRQAVIALLGEANQSLPVL-VLADGAPSPDDAGSHGGRRF---IDDPRR 98 (112)
T ss_pred CCchHHHHhHHhhChhh-hhcccEEEeCCCCchHHHHHHhChhccCCCEE-EeCCCCCCcccccccCCeEE---eCCHHH
Confidence 99999998887654332 224566778876654 3455554 3688986 45444433222222111111 226677
Q ss_pred HHHHHHHH
Q 032360 112 FIDIVETV 119 (142)
Q Consensus 112 l~~~i~~~ 119 (142)
+...|.+.
T Consensus 99 I~~~La~r 106 (112)
T PF11287_consen 99 ILRYLAER 106 (112)
T ss_pred HHHHHHHH
Confidence 77766654
No 301
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=35.05 E-value=79 Score=24.15 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEE-EEeCCC----------------cccHHhhccccCCcEEEEEecCc
Q 032360 26 VVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIY-LVDISE----------------VPDFNTMYELYDPSTVMFFFRNK 88 (142)
Q Consensus 26 vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~-~vd~d~----------------~~~~~~~~~v~~~Pt~~~~~~g~ 88 (142)
||=.|.+.-|..|-.-...|.+++++ ++.+... .||.-+ ...+...|+-++++|=-.+.+|.
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 44457778899999999999998876 3222222 266422 12466678888888876777776
Q ss_pred EEEEEeccccccccccccCChhHHHHHHHHH
Q 032360 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
Q Consensus 89 ~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~ 119 (142)
.- ..|. ++.++.+.|+..
T Consensus 123 ~~---~~Ga----------d~~~i~~~i~a~ 140 (261)
T COG5429 123 VH---ANGA----------DPGAIEDAIAAM 140 (261)
T ss_pred hh---hcCC----------CHHHHHHHHHHh
Confidence 43 2344 778888887765
No 302
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=34.19 E-value=52 Score=21.47 Aligned_cols=33 Identities=6% Similarity=-0.083 Sum_probs=22.4
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
..|+-+.|..|++....|++- .+.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 457889999999988777642 244455665443
No 303
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=33.89 E-value=64 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.2
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEEe
Q 032360 6 PHLHSGWAVDQAILAEEERLVVIRFG 31 (142)
Q Consensus 6 ~~l~s~~~~~~~i~~~~~k~vvv~F~ 31 (142)
|..-+++++-+++++....||+|.|-
T Consensus 35 PT~lsG~elV~lIk~a~~DPV~VMfD 60 (180)
T PF14097_consen 35 PTPLSGEELVELIKQAPHDPVLVMFD 60 (180)
T ss_pred CCcCCHHHHHHHHHhCCCCCEEEEEe
Confidence 55667889999999988999999994
No 304
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=33.07 E-value=98 Score=26.86 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=30.8
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEE--EeCCCcccHHhhccccCCcEEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYL--VDISEVPDFNTMYELYDPSTVM 82 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~--vd~d~~~~~~~~~~v~~~Pt~~ 82 (142)
.++-++|..-..-.....+|+.+.+ +.++. -+......|.+--.-.+.||+.
T Consensus 184 ~~~~tiC~at~~Rq~a~~~la~~~d--~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ 237 (647)
T PRK00087 184 KVFNTICNATEVRQEAAEKLAKKVD--VMIVVGGKNSSNTTKLYEICKSNCTNTIH 237 (647)
T ss_pred ccCCCcchhhhhHHHHHHHHHhhCC--EEEEECCCCCccHHHHHHHHHHHCCCEEE
Confidence 4469999999988888999987643 22222 3333333333322223568876
No 305
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=33.06 E-value=46 Score=19.34 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHH
Q 032360 32 HDWDETCMQMDEVLSS 47 (142)
Q Consensus 32 A~WC~~C~~~~p~l~~ 47 (142)
.+||+.|++..-.+..
T Consensus 13 ~s~sp~~~~v~~~L~~ 28 (72)
T cd03054 13 PSLSPECLKVETYLRM 28 (72)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4799999999888765
No 306
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=33.02 E-value=13 Score=28.87 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=42.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc---cHHhhccccCCcEEEE----------EecCcEEE
Q 032360 25 LVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP---DFNTMYELYDPSTVMF----------FFRNKHIM 91 (142)
Q Consensus 25 ~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~---~~~~~~~v~~~Pt~~~----------~~~g~~v~ 91 (142)
-+...++-++|..-..=...+.+|+++.+ .++.|--.... .|.+.-.-.+.|++.+ |.+.+.+.
T Consensus 183 ~~~~~~~nTIC~aT~~RQ~a~~~La~~vD---~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VG 259 (281)
T PF02401_consen 183 ELEGPVFNTICYATQNRQEAARELAKEVD---AMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVG 259 (281)
T ss_dssp CEE-SCC-S--CHHHHHHHHHHHHHCCSS---EEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEE
T ss_pred cccCCCCCCCCHhHHHHHHHHHHHHhhCC---EEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEE
Confidence 34445899999999888888888887542 23333322222 2222222234478753 23334566
Q ss_pred EEeccccccccccccCChhHHHHHHHHHHh
Q 032360 92 IDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
+.-|.+ +|+.+.+.+...++
T Consensus 260 ItaGAS----------TP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 260 ITAGAS----------TPDWIIEEVIDRLE 279 (281)
T ss_dssp EEE-TT----------S-HHHHHHHHHHHH
T ss_pred EEccCC----------CCHHHHHHHHHHHh
Confidence 665655 77877776665543
No 307
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=32.32 E-value=2.7e+02 Score=22.42 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=47.3
Q ss_pred HHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcEE
Q 032360 17 AILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 90 (142)
Q Consensus 17 ~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~v 90 (142)
.+.+...++++|+=....+ .+.+..+++-.. ..+.|..+|+.+.+.+.+-|....+-.++.|-.-+.+
T Consensus 21 ~L~~~gy~v~~vDNl~n~~------~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~v 90 (343)
T KOG1371|consen 21 ALLKRGYGVVIVDNLNNSY------LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAALAAV 90 (343)
T ss_pred HHHhCCCcEEEEecccccc------hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehhhhcc
Confidence 3344566788887554444 666666666544 4567777999999999999999888888877443333
No 308
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=32.31 E-value=76 Score=20.32 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=32.6
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--cccHHhhcccc--CCcEEEEE-ecCcEE
Q 032360 30 FGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELY--DPSTVMFF-FRNKHI 90 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~~~~~~~~~v~--~~Pt~~~~-~~g~~v 90 (142)
||=.+||-|......+.+... ...+-.+|... ..++.+.+++. ...+.+.. .+|+.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 63 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR----GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERV 63 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC----CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEE
Confidence 566789999999998887622 12344466633 33344556653 33444443 455534
No 309
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=31.65 E-value=1.9e+02 Score=21.10 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHhcCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 032360 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 8 l~s~~~~~~~i~~~~~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~ 54 (142)
++-....-+.+.+..-+|+.|.||-|.=..-.++...|+.+.....+
T Consensus 128 i~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 128 ITKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred hhhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 33344555677766779999999999888888888889988876654
No 310
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.45 E-value=1.3e+02 Score=24.07 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=37.0
Q ss_pred CcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCC--ceEECcCCchhhccC
Q 032360 78 PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGR--GLVIAPKDYSTKYRY 142 (142)
Q Consensus 78 ~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 142 (142)
=+.++++-.+..+. +.+.|.+.+++..+-+.+|. ...+-|--|.|.|-|
T Consensus 106 d~~~lVlpsDH~I~----------------d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGY 156 (333)
T COG0836 106 DALVLVLPSDHVIA----------------DEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGY 156 (333)
T ss_pred CcEEEEecCcceec----------------cHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcce
Confidence 35666666666652 77899999999998888875 334578999999987
No 311
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=31.43 E-value=1.7e+02 Score=20.44 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=32.6
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKN-FAVIYLVDI 63 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~ 63 (142)
+.-+.+.++++.++-|.-+.-.++.+++.+.+ ++.+-.++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45678899999999999999999999999876 444444544
No 312
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=31.38 E-value=75 Score=21.18 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.0
Q ss_pred EEEEeCCCCHHHHHHHHHHHHH
Q 032360 27 VIRFGHDWDETCMQMDEVLSSV 48 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l 48 (142)
+--|+.+.|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4567899999999998888753
No 313
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=30.83 E-value=1.1e+02 Score=17.57 Aligned_cols=51 Identities=6% Similarity=-0.132 Sum_probs=28.1
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC-CcccHHhhccccCCcEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTV 81 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d-~~~~~~~~~~v~~~Pt~ 81 (142)
.|+.+.|+.|++..-.+....... ......+|.. ..+++.+......+|++
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~~~~~p~~~vP~l 54 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD--DVELVLVNPWSDDESLLAVNPLGKIPAL 54 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC--CcEEEEcCcccCChHHHHhCCCCCCCEE
Confidence 456788999998777665411111 1233345432 23455555556677865
No 314
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=30.40 E-value=83 Score=21.95 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.0
Q ss_pred EEecCcEEEEEeccc
Q 032360 83 FFFRNKHIMIDLGTG 97 (142)
Q Consensus 83 ~~~~g~~v~~~~~~~ 97 (142)
++.+|+.+..+..+.
T Consensus 80 YlddGr~vL~Dld~~ 94 (169)
T KOG4079|consen 80 YLDDGREVLFDLDGM 94 (169)
T ss_pred eecCcceEEEEcccc
Confidence 457888998888887
No 315
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=29.96 E-value=2.3e+02 Score=20.89 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc-----ccHHhhccccCCcEEE--EEecCcEEEEEeccccccccccccC
Q 032360 35 DETCMQMDEVLSSVAETIKNFAVIYLVDISEV-----PDFNTMYELYDPSTVM--FFFRNKHIMIDLGTGNNNKINWALK 107 (142)
Q Consensus 35 C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~-----~~~~~~~~v~~~Pt~~--~~~~g~~v~~~~~~~~~~~i~~~~~ 107 (142)
+..=..|.+.+..+.+. ..+.+|.... ...++++++ |... +|.++. .
T Consensus 102 T~~~~~m~~vl~~l~~~-----gl~FvDS~T~~~s~a~~~A~~~gv---p~~~rdvfLD~~-~----------------- 155 (213)
T PF04748_consen 102 TSDREAMRWVLEVLKER-----GLFFVDSRTTPRSVAPQVAKELGV---PAARRDVFLDND-Q----------------- 155 (213)
T ss_dssp HC-HHHHHHHHHHHHHT-----T-EEEE-S--TT-SHHHHHHHCT-----EEE-SEETTST-------------------
T ss_pred cCCHHHHHHHHHHHHHc-----CCEEEeCCCCcccHHHHHHHHcCC---CEEeeceecCCC-C-----------------
Confidence 44555677777666653 2455665443 456777777 6643 232222 1
Q ss_pred ChhHHHHHHHHHHhhhh-cCCceEECcCCchh
Q 032360 108 DKQEFIDIVETVYRGAR-KGRGLVIAPKDYST 138 (142)
Q Consensus 108 ~~~el~~~i~~~~~~~~-~~~~~~~~~~~~~~ 138 (142)
+.+.+...++++.+.++ .|..|.++.--|.|
T Consensus 156 ~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~T 187 (213)
T PF04748_consen 156 DEAAIRRQLDQAARIARKQGSAIAIGHPRPET 187 (213)
T ss_dssp SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCH
T ss_pred CHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHH
Confidence 67888888888887775 66677777655544
No 316
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=29.70 E-value=45 Score=26.67 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC
Q 032360 32 HDWDETCMQMDEVLSSVAETIKN 54 (142)
Q Consensus 32 A~WC~~C~~~~p~l~~l~~~~~~ 54 (142)
-.|||.|......|+++++.+.+
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999887753
No 317
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.65 E-value=68 Score=21.00 Aligned_cols=33 Identities=6% Similarity=-0.151 Sum_probs=22.7
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 032360 28 IRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEV 66 (142)
Q Consensus 28 v~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~ 66 (142)
..|+-+.|..|++....|++- .+.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 457889999999988888752 234445665443
No 318
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=29.57 E-value=1.7e+02 Score=23.71 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=46.7
Q ss_pred CCCHHHHHH-HHHHHHHHHHhcCCeEEEEEeCCCc--ccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCCh
Q 032360 33 DWDETCMQM-DEVLSSVAETIKNFAVIYLVDISEV--PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDK 109 (142)
Q Consensus 33 ~WC~~C~~~-~p~l~~l~~~~~~~~~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~ 109 (142)
.+|-.|+.+ ...+.+++++.+-...+-.=++++. +.+...+-+...+.+ .+.+-..+. +.
T Consensus 263 ~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~~~l-------pilRPLi~~----------dK 325 (381)
T PRK08384 263 YTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQASDL-------PIYRPLIGM----------DK 325 (381)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhccCCC-------cEEeeCCCC----------CH
Confidence 479999994 5667778877642222111222221 111111122222222 233334444 77
Q ss_pred hHHHHHHHHHH--hhh-hcCCceEECcCCchhhcc
Q 032360 110 QEFIDIVETVY--RGA-RKGRGLVIAPKDYSTKYR 141 (142)
Q Consensus 110 ~el~~~i~~~~--~~~-~~~~~~~~~~~~~~~~~~ 141 (142)
+|..+.-+++- .-+ .+....+..|+.|.|+-+
T Consensus 326 ~EIi~~Ar~iGT~~~s~~~~~dc~f~pk~P~t~~~ 360 (381)
T PRK08384 326 EEIVAIAKTIGTFELSTLPEDEIPFIPKHPVIRGS 360 (381)
T ss_pred HHHHHHHHHcCCcccccCCCCceEEeCCCCcCCCC
Confidence 78777777652 111 122367888999988743
No 319
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=27.47 E-value=1e+02 Score=18.48 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHH
Q 032360 32 HDWDETCMQMDEVLSSV 48 (142)
Q Consensus 32 A~WC~~C~~~~p~l~~l 48 (142)
-+||+.|++..-.+...
T Consensus 13 ~~~Sp~~~kv~~~L~~~ 29 (84)
T cd03038 13 RAFSPNVWKTRLALNHK 29 (84)
T ss_pred CCcCChhHHHHHHHHhC
Confidence 37899999988877654
No 320
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=26.50 E-value=1.6e+02 Score=18.15 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred cEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHh
Q 032360 79 STVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
Q Consensus 79 Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~ 121 (142)
.|+.+|..|+.+. .|.. +.+++.+.+++++.
T Consensus 50 ~t~~IF~sGki~i--tGak----------s~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 50 ATVLIFSSGKIVI--TGAK----------SEEEAKKAIEKILP 80 (86)
T ss_dssp EEEEEETTSEEEE--EEES----------SHHHHHHHHHHHHH
T ss_pred EEEEEEcCCEEEE--EecC----------CHHHHHHHHHHHHH
Confidence 4666776666553 2333 77888888877654
No 321
>PRK10853 putative reductase; Provisional
Probab=25.79 E-value=1e+02 Score=20.41 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=22.5
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 032360 27 VIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISE 65 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~ 65 (142)
+..|+-+.|..|++....|++- .+.+-.+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehcc
Confidence 3467889999999988888642 24444566543
No 322
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=1.8e+02 Score=23.94 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=20.7
Q ss_pred EeCCCCHHHHHH--HHHHHHHHHHhc-CCeEEEEEe
Q 032360 30 FGHDWDETCMQM--DEVLSSVAETIK-NFAVIYLVD 62 (142)
Q Consensus 30 F~A~WC~~C~~~--~p~l~~l~~~~~-~~~~~~~vd 62 (142)
|-...|||||.= .+.+.++-++.. +++.++..|
T Consensus 76 lmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 76 LMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred EEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 334489999983 345555555433 357777787
No 323
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=25.33 E-value=2e+02 Score=18.70 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHHhhhhcCCceEECcCCchhhcc
Q 032360 108 DKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYR 141 (142)
Q Consensus 108 ~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (142)
+...|.+..+.+...+......+.+|-++-||.+
T Consensus 17 d~~~L~~~~~~I~~~~k~~~~~~~GpipLPtk~~ 50 (101)
T CHL00135 17 NHELLNSSCKKIIDTASRTNATAVGPIPLPTKRR 50 (101)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEeCCcCCCcEEE
Confidence 6778888888888877776667899999888753
No 324
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.84 E-value=1.4e+02 Score=20.13 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=17.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q 032360 27 VIRFGHDWDETCMQMDEVLSS 47 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~ 47 (142)
+..|+-+.|.-||+....|++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456778999999998888865
No 325
>COG5575 ORC2 Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]
Probab=23.55 E-value=1.2e+02 Score=25.08 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCCCcccHHhhccccCCcEEEEEecCcE
Q 032360 37 TCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 89 (142)
Q Consensus 37 ~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 89 (142)
.|+.+...+.+|++.+. ..|+.+... ..+...|-+..+|.+++|.=++.
T Consensus 242 q~k~F~q~~feL~~~Fn--LLFYG~GSK--~~fL~~f~~~~LP~~P~~~lnGY 290 (535)
T COG5575 242 QCKNFHQELFELARSFN--LLFYGYGSK--TAFLRKFFPSALPCFPIFYLNGY 290 (535)
T ss_pred eccccHHHHHHHhhhce--EEEEecCch--HHHHHHHhHHhcCCcceeeeccc
Confidence 49999999999998764 556655543 45778888888899998854443
No 326
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=23.35 E-value=3e+02 Score=20.07 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHHhh
Q 032360 108 DKQEFIDIVETVYRG 122 (142)
Q Consensus 108 ~~~el~~~i~~~~~~ 122 (142)
+++++.+.|+.+.++
T Consensus 192 ~~~~i~~~l~~l~~~ 206 (207)
T COG1999 192 PPEEIAADLKKLLKE 206 (207)
T ss_pred ChHHHHHHHHHHhhc
Confidence 678888888887653
No 327
>PRK12411 cytidine deaminase; Provisional
Probab=23.01 E-value=54 Score=22.36 Aligned_cols=12 Identities=25% Similarity=0.083 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHH
Q 032360 34 WDETCMQMDEVL 45 (142)
Q Consensus 34 WC~~C~~~~p~l 45 (142)
=||.||+..-.|
T Consensus 85 PCG~CRQ~l~Ef 96 (132)
T PRK12411 85 PCGACRQVMVEL 96 (132)
T ss_pred CchhHHHHHHHh
Confidence 499999985544
No 328
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=22.95 E-value=1.3e+02 Score=22.00 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=7.8
Q ss_pred HHHHHHHhcCCCEEEEEEeCCC
Q 032360 13 AVDQAILAEEERLVVIRFGHDW 34 (142)
Q Consensus 13 ~~~~~i~~~~~k~vvv~F~A~W 34 (142)
++.+.+. +.++|+++.|++-|
T Consensus 123 ~lr~~l~-~~~~P~LllFGTGw 143 (185)
T PF09936_consen 123 ELRRMLE-EEDRPVLLLFGTGW 143 (185)
T ss_dssp HHHHHHH-H--S-EEEEE--TT
T ss_pred HHHHHHh-ccCCeEEEEecCCC
Confidence 3444442 23456666666665
No 329
>PRK05578 cytidine deaminase; Validated
Probab=22.94 E-value=56 Score=22.25 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHH
Q 032360 33 DWDETCMQMDEVL 45 (142)
Q Consensus 33 ~WC~~C~~~~p~l 45 (142)
+=||.||++.-.|
T Consensus 84 sPCG~CRQ~l~e~ 96 (131)
T PRK05578 84 SPCGRCRQVLAEF 96 (131)
T ss_pred CccHHHHHHHHHh
Confidence 3499999886655
No 330
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=22.87 E-value=4.2e+02 Score=21.52 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=27.5
Q ss_pred CHHHHHH----HHHHHHHHHHhcCC---eEEEEEeCC-Cc--ccHHhhcccc-CCcEEEEEecCcEEE
Q 032360 35 DETCMQM----DEVLSSVAETIKNF---AVIYLVDIS-EV--PDFNTMYELY-DPSTVMFFFRNKHIM 91 (142)
Q Consensus 35 C~~C~~~----~p~l~~l~~~~~~~---~~~~~vd~d-~~--~~~~~~~~v~-~~Pt~~~~~~g~~v~ 91 (142)
||-|.+- .....++.+.+.+. +.+...-+- .. +.-.+.+||. +.+..++|.+|+.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~ 338 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK 338 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee
Confidence 5555553 33444455555432 333333332 11 1233445664 444566777777764
No 331
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=22.86 E-value=96 Score=19.23 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 032360 33 DWDETCMQMDEVLSSVAET 51 (142)
Q Consensus 33 ~WC~~C~~~~p~l~~l~~~ 51 (142)
..|++|+........+...
T Consensus 37 ~~C~~C~~e~~~~~~~~~~ 55 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKL 55 (84)
T ss_pred HhCHHHHHHHHHHHHHHHH
Confidence 4699999988766665444
No 332
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=22.52 E-value=56 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=19.0
Q ss_pred EeCCCCHHHHHHHHHHHHHHHH
Q 032360 30 FGHDWDETCMQMDEVLSSVAET 51 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~ 51 (142)
||-+|..|.++-...+++++++
T Consensus 32 ~ylswakpykrahesieklsnk 53 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNK 53 (126)
T ss_pred eeeeecChhhHHHhHHHHhccc
Confidence 5789999999999999988764
No 333
>PF11774 Lsr2: Lsr2 ; InterPro: IPR024412 This entry represents Lsr2, which is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homologue of the H-NS-like proteins []. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression [, ].; PDB: 4E1R_B 4E1P_B 2KNG_A.
Probab=22.11 E-value=1.4e+02 Score=19.67 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=29.6
Q ss_pred cEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcC
Q 032360 79 STVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
Q Consensus 79 Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~ 126 (142)
-|+-|=.+|....+++... +.++|.+.|+..+..+++-
T Consensus 20 etv~F~ldG~~YeIDLs~~----------na~~lr~~l~~yi~~arr~ 57 (110)
T PF11774_consen 20 ETVRFGLDGVDYEIDLSAE----------NAAKLRDALAPYIAAARRV 57 (110)
T ss_dssp EEEEEEETTEEEEEEE-HH----------HHHHHHHHHHHHHHHSEEE
T ss_pred eEEEEEECCeEEEEECCHH----------HHHHHHHHHHHHHHHheEc
Confidence 4666668898888888877 8899999999998776543
No 334
>PRK10026 arsenate reductase; Provisional
Probab=21.99 E-value=1.4e+02 Score=20.63 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=17.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q 032360 27 VIRFGHDWDETCMQMDEVLSS 47 (142)
Q Consensus 27 vv~F~A~WC~~C~~~~p~l~~ 47 (142)
+..|+-+.|..|++....|++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 446788999999999888865
No 335
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=21.69 E-value=1.8e+02 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.359 Sum_probs=16.6
Q ss_pred cccHHhhccccCCcEEEEEe
Q 032360 66 VPDFNTMYELYDPSTVMFFF 85 (142)
Q Consensus 66 ~~~~~~~~~v~~~Pt~~~~~ 85 (142)
+|.+=++|+|..+|++++..
T Consensus 151 DP~lF~~F~I~~VPafVv~C 170 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC 170 (212)
T ss_pred CHHHHHhcCCccccEEEEEc
Confidence 56677899999999998863
No 336
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.35 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=0% Similarity=-0.005 Sum_probs=20.5
Q ss_pred CCcccHHhhccccCCcEEEEEecCcEEE
Q 032360 64 SEVPDFNTMYELYDPSTVMFFFRNKHIM 91 (142)
Q Consensus 64 d~~~~~~~~~~v~~~Pt~~~~~~g~~v~ 91 (142)
|....+.++|+|..+|+++ ..+|....
T Consensus 172 dQ~g~Lt~rF~I~~VPavV-~q~g~~l~ 198 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARV-SQEGLRLR 198 (202)
T ss_pred cCCchHhhccCceeeceEE-EecCCEEE
Confidence 5566799999999999975 45566553
No 337
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.17 E-value=3e+02 Score=20.05 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=22.6
Q ss_pred EEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhc
Q 032360 80 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK 125 (142)
Q Consensus 80 t~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~ 125 (142)
++++|+.|+.+- .|.. +.+++...++.+++.-++
T Consensus 55 a~LIF~SGK~Vc--TGaK----------s~ed~~~av~~~~~~L~~ 88 (185)
T COG2101 55 AALIFRSGKVVC--TGAK----------SVEDVHRAVKKLAKKLKD 88 (185)
T ss_pred eEEEEecCcEEE--eccC----------cHHHHHHHHHHHHHHHHh
Confidence 455777777662 2333 788888888887765554
No 338
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=21.16 E-value=77 Score=19.99 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=16.6
Q ss_pred CChHHHHHHHHhcCCCEEEEEEeCCCCHH--HHH
Q 032360 9 HSGWAVDQAILAEEERLVVIRFGHDWDET--CMQ 40 (142)
Q Consensus 9 ~s~~~~~~~i~~~~~k~vvv~F~A~WC~~--C~~ 40 (142)
.+...+.+.+.+..|+.+.- ||+| |+.
T Consensus 52 ~~~~~~~~~l~~L~Gk~L~C-----wC~P~~CHg 80 (86)
T PF14216_consen 52 RTREILRDALEELRGKDLGC-----WCPPKPCHG 80 (86)
T ss_pred cccHHHHHHHHhcCCCceEe-----eCCCCCCch
Confidence 34455555666666765443 7888 875
No 339
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=21.05 E-value=43 Score=16.85 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=10.7
Q ss_pred ceEECcCCchhhccC
Q 032360 128 GLVIAPKDYSTKYRY 142 (142)
Q Consensus 128 ~~~~~~~~~~~~~~~ 142 (142)
|+.-...||.|+.+|
T Consensus 7 glpA~Y~DP~T~l~Y 21 (30)
T PF08265_consen 7 GLPARYRDPKTGLPY 21 (30)
T ss_pred CCCccccCCCCCCcc
Confidence 455566888888776
No 340
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.04 E-value=1.1e+02 Score=19.68 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=20.0
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 032360 30 FGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVP 67 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~ 67 (142)
|+-+.|.-|++....|++- .+.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhCC
Confidence 5678999999998888751 3455568876643
No 341
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=20.85 E-value=1.2e+02 Score=24.16 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=49.8
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCccc----HHhhccccCCcEEEEEecCcEEEEEecccc
Q 032360 23 ERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPD----FNTMYELYDPSTVMFFFRNKHIMIDLGTGN 98 (142)
Q Consensus 23 ~k~vvv~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~ 98 (142)
|-+=+|+|||+---|-+.-...|. . ++.++.....+.+++.. +..+++...-|.-+++-.|+.-..+..|.
T Consensus 273 GAlDMVnf~a~~tVPeqyr~R~~~---~-HN~~vtlmrtspee~~ai~rwig~kLn~c~gpvrFliPe~GvsalD~~G~- 347 (401)
T COG5441 273 GALDMVNFGAPETVPEQYRDRLFY---A-HNPQVTLMRTSPEECRAIGRWIGAKLNLCAGPVRFLIPEGGVSALDAPGQ- 347 (401)
T ss_pred cceeeecCCCcccChHHhcCcchh---h-cCCceeEEeCCHHHHHHHHHHHHHHHhhccCceEEEecCCCcccccCCCC-
Confidence 455689999997777443322221 1 12234455566666654 44566666777755554444433333332
Q ss_pred ccccccccCChhHHHHHHHHHH
Q 032360 99 NNKINWALKDKQEFIDIVETVY 120 (142)
Q Consensus 99 ~~~i~~~~~~~~el~~~i~~~~ 120 (142)
.|.+++.+..+++++-
T Consensus 348 ------pf~dpeA~aa~~~ale 363 (401)
T COG5441 348 ------PFHDPEADAALFEALE 363 (401)
T ss_pred ------cCCChHHHHHHHHHHH
Confidence 4678888887777763
No 342
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=20.56 E-value=1.8e+02 Score=16.89 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=28.2
Q ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC---CcccHHhhccccCCcEE
Q 032360 30 FGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS---EVPDFNTMYELYDPSTV 81 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d---~~~~~~~~~~v~~~Pt~ 81 (142)
|+.+-|+.|++..-.++...- ......+|.. ..+++.+..-...+|++
T Consensus 4 y~~~~~~~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L 54 (75)
T cd03044 4 YTYPGNPRSLKILAAAKYNGL----DVEIVDFQPGKENKTPEFLKKFPLGKVPAF 54 (75)
T ss_pred ecCCCCccHHHHHHHHHHcCC----ceEEEecccccccCCHHHHHhCCCCCCCEE
Confidence 456668888877666664322 1233445553 23456665566788886
No 343
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.38 E-value=42 Score=18.45 Aligned_cols=18 Identities=17% Similarity=0.208 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 032360 33 DWDETCMQMDEVLSSVAE 50 (142)
Q Consensus 33 ~WC~~C~~~~p~l~~l~~ 50 (142)
-+|.||+.=.+.+.++-+
T Consensus 17 GkC~PCR~Gt~~l~~~l~ 34 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILE 34 (46)
T ss_dssp S--HHHHCCCCHHHHHHH
T ss_pred CCCCCcHhHHHHHHHHHH
Confidence 479999984444444433
No 344
>PRK10387 glutaredoxin 2; Provisional
Probab=20.37 E-value=3.2e+02 Score=19.20 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=14.3
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 032360 30 FGHDWDETCMQMDEVLSSV 48 (142)
Q Consensus 30 F~A~WC~~C~~~~p~l~~l 48 (142)
++.+.||+|++..=.+...
T Consensus 4 y~~~~sp~~~kv~~~L~~~ 22 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLK 22 (210)
T ss_pred EeCCCCchHHHHHHHHHHc
Confidence 4567799999887776654
No 345
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.31 E-value=2.4e+02 Score=17.83 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=34.5
Q ss_pred cCCeEEEEEeCCCc-----ccHHhhccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhh
Q 032360 53 KNFAVIYLVDISEV-----PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
Q Consensus 53 ~~~~~~~~vd~d~~-----~~~~~~~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~ 123 (142)
.+++.++.|+.+-. ..+.+.|++...-++-+-+.|..+.. .+.++|...|...-+.+
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDEGD~iti--------------~sq~DLd~Ai~~a~~~~ 71 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDDGDMITM--------------GDQDDLDMAIDTARSEA 71 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCccc--------------cCHHHHHHHHHHHHHHH
Confidence 34455555655432 34677888876555545555544432 27788988888876644
No 346
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.20 E-value=81 Score=22.77 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=11.0
Q ss_pred HhhccccCCcEEEE
Q 032360 70 NTMYELYDPSTVMF 83 (142)
Q Consensus 70 ~~~~~v~~~Pt~~~ 83 (142)
+.+.||.++|+|++
T Consensus 172 A~~~Gv~GVP~fvv 185 (209)
T cd03021 172 ALKYGAFGLPWIVV 185 (209)
T ss_pred HHHcCCCCCCEEEE
Confidence 44568999999855
No 347
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=20.18 E-value=94 Score=18.39 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=27.8
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC----CcccHHhhccccCCcEE
Q 032360 29 RFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDIS----EVPDFNTMYELYDPSTV 81 (142)
Q Consensus 29 ~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d----~~~~~~~~~~v~~~Pt~ 81 (142)
.+|...++.|++..-.+....-.+ ....+|.. ..+++.+......+|++
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~gl~~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~l 55 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELGLPY----EIHPVDISKGEQKKPEFLKINPNGRIPAI 55 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcCCCc----EEEEecCcCCcccCHHHHHhCcCCCCCEE
Confidence 445444688888887776653322 33345542 22445555555677876
No 348
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=20.18 E-value=1.2e+02 Score=26.28 Aligned_cols=51 Identities=6% Similarity=0.202 Sum_probs=37.0
Q ss_pred ccccCCcEEEEEecCcEEEEEeccccccccccccCChhHHHHHHHHHHhhhhcCCceEECc
Q 032360 73 YELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAP 133 (142)
Q Consensus 73 ~~v~~~Pt~~~~~~g~~v~~~~~~~~~~~i~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~ 133 (142)
+++...|+.++|++|........+. +.+...+.|..++......++=+..|
T Consensus 232 l~~~~~~~~llfrnG~~q~l~~~~~----------s~~~y~~~I~~~lg~~~~a~~pt~~p 282 (606)
T KOG1731|consen 232 LKPDNFPLALLFRNGEQQPLWPSSS----------SRSAYVKKIDDLLGDKNEASGPTLHP 282 (606)
T ss_pred cCCCCchhhhhhcCCcccccccccc----------cHHHHHHHHHHHhcCccccCCCCcCc
Confidence 7788999999999988776554444 66788888888887766655544443
No 349
>PRK06848 hypothetical protein; Validated
Probab=20.17 E-value=66 Score=22.15 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHH
Q 032360 34 WDETCMQMDEVL 45 (142)
Q Consensus 34 WC~~C~~~~p~l 45 (142)
=||.||+..-.+
T Consensus 96 PCG~CRQvl~E~ 107 (139)
T PRK06848 96 PCGACRELISDY 107 (139)
T ss_pred CChhhHHHHHHh
Confidence 499999885443
Done!