BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032361
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54797|T10_MOUSE Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2
SV=1
Length = 276
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 1 MVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKE 60
+ Y NR E + T PG + L+NALL++PW ++L + M+ + E K+
Sbjct: 134 VCYYGNRGEPEPIVLT---PGTYGLSNALLETPW---KKLCFGKQLFMEAVEQSEALPKD 187
Query: 61 MADELMMDTTKDDEGLLPHIYPPETESH-------LSSIFIDTERPLGRYGTRSTSSLYV 113
+ ++D ++E LP P E + + + YGTR+ + + V
Sbjct: 188 VLVTQLLDVLNNEEAQLPD---PAIEDQGQEYVQPILNKYAAVWCRCASYGTRTNTIILV 244
Query: 114 KSNGEVYFYERH-LEKDLWKEQTVAYQI 140
+NG V F ER L+KD + +T Y+
Sbjct: 245 DANGHVTFTERSMLDKDTSRWETNTYEF 272
>sp|Q6ICL3|TNG2_HUMAN Transport and Golgi organization 2 homolog OS=Homo sapiens
GN=TANGO2 PE=2 SV=1
Length = 276
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 1 MVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKE 60
+ Y NR E + T PG + L+NALL++PW K F E +++ + K+
Sbjct: 134 ICYYGNRGEPDPIVLT---PGTYGLSNALLETPWRKLCFGKQLFLEAVER---SQALPKD 187
Query: 61 MADELMMDTTKDDEGLLPHIYPPETESH--------LSSIFIDTERPLGRYGTRSTSSLY 112
+ ++D ++E LP P E LS R G YGTR+ + +
Sbjct: 188 VLIASLLDVLNNEEAQLPD---PAIEDQGGEYVQPMLSKYAAVCVRCPG-YGTRTNTIIL 243
Query: 113 VKSNGEVYFYERH-LEKDL--WKEQTVAYQIE 141
V ++G V F ER ++KDL W+ +T + ++
Sbjct: 244 VDADGHVTFTERSMMDKDLSHWETRTYEFTLQ 275
>sp|Q29RZ5|TNG2_BOVIN Transport and Golgi organization 2 homolog OS=Bos taurus GN=TANGO2
PE=2 SV=1
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 1 MVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKE 60
+ Y NR E + ++PG + L+NALL++PW K F E +++ EL
Sbjct: 134 ICYYGNRGEREPVV---LAPGTYGLSNALLETPWRKLCFGKQLFLEAVER--GRELPRDA 188
Query: 61 MADELMMDTTKDDEGLLPHIYPPETESH-------LSSIFIDTERPLGRYGTRSTSSLYV 113
+ +L+ +DE LP P E+ + S + YGTR+++ + V
Sbjct: 189 LVAQLLA-VLSNDEAQLPD---PAIEAQGREYVRPILSKYAAVCVRCPDYGTRTSTVILV 244
Query: 114 KSNGEVYFYERHL 126
++G V F ER +
Sbjct: 245 DADGHVTFTERSM 257
>sp|A1TNB1|SYE_ACIAC Glutamate--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1)
GN=gltX PE=3 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 6 NRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMA 62
N E K + V P I L++AL W KA + AFKE++ G L+M ++A
Sbjct: 391 NEEERAKHVVDAVKPAIAALSDALAQCAWDKAS-IAAAFKEVLAAQG---LKMPQLA 443
>sp|A1BDI1|GATA_CHLPD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=gatA PE=3 SV=1
Length = 476
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 2 VYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEG 54
+YV +R+EG GK + + G +VL+ D+ + KAQ++ F+ D+Y E
Sbjct: 340 MYVNSRTEGFGKEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQ---DRYREA 390
>sp|B3EFE2|GATA_CHLL2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=gatA PE=3
SV=1
Length = 474
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 2 VYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEG 54
+YV +R+EG GK + + G +VL+ D+ + KAQ++ F+ D+Y E
Sbjct: 340 MYVNSRTEGFGKEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQ---DRYREA 390
>sp|Q9JTI3|ILVC_NEIMA Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=ilvC PE=3 SV=1
Length = 337
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 8 SEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMM 67
S+G A G++V+ S W KA+ GH K + + E ++ M + DE M
Sbjct: 26 SQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETM- 84
Query: 68 DTTKDDEGLLPHIYPPETESHL 89
P +Y E ++L
Sbjct: 85 ----------PAVYHAEVAANL 96
>sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1
Length = 3744
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 19 SPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADEL---MMDTTKDDEG 75
+P L ++DS + + L + +M YG E KE A++L + D K+ E
Sbjct: 457 APRAKKLLMIIIDSYMNRFKTLNRQYDTIMKYYGRYETHKKEKAEKLKNSIQDNDKESEE 516
Query: 76 LLPHIYPPETESHL 89
+ + P + HL
Sbjct: 517 FMRKVLEPSDDDHL 530
>sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup C
/ serotype 2a (strain ATCC 700532 / FAM18) GN=ilvC PE=3
SV=1
Length = 337
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 8 SEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMM 67
S+G A G++V+ S W KA+ GH K + + E ++ M + DE M
Sbjct: 26 SQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETM- 84
Query: 68 DTTKDDEGLLPHIYPPETESHL 89
P +Y E ++L
Sbjct: 85 ----------PAVYHAEVTANL 96
>sp|Q9JYI2|ILVC_NEIMB Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=ilvC PE=3 SV=1
Length = 337
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 8 SEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMM 67
S+G A G++V+ S W KA+ GH K + + E ++ M + DE M
Sbjct: 26 SQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETM- 84
Query: 68 DTTKDDEGLLPHIYPPETESHL 89
P +Y E ++L
Sbjct: 85 ----------PAVYHAEVTANL 96
>sp|A9M177|ILVC_NEIM0 Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup C
(strain 053442) GN=ilvC PE=3 SV=1
Length = 337
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 8 SEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMM 67
S+G A G++V+ S W KA+ GH K + + E ++ M + DE M
Sbjct: 26 SQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETM- 84
Query: 68 DTTKDDEGLLPHIYPPETESHL 89
P +Y E ++L
Sbjct: 85 ----------PAVYHAEVTANL 96
>sp|B3QQF5|GATA_CHLP8 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobaculum
parvum (strain NCIB 8327) GN=gatA PE=3 SV=1
Length = 481
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 2 VYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEG 54
+YV +R+EG G + + G +VL+ D+ + KAQ++ F+E KY E
Sbjct: 340 MYVNSRTEGFGAEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQE---KYREA 390
>sp|Q5F7E5|ILVC_NEIG1 Ketol-acid reductoisomerase OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=ilvC PE=3 SV=1
Length = 337
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 8 SEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMM 67
S+G A G++V+ S W KA+ GH K + + E ++ M + DE M
Sbjct: 26 SQGHAHAANLKDSGVNVVIGLRHGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETM- 84
Query: 68 DTTKDDEGLLPHIYPPETESHL 89
P +Y E ++L
Sbjct: 85 ----------PAVYHAEVAANL 96
>sp|Q04956|ATX1_PLAFA Probable cation-transporting ATPase 1 OS=Plasmodium falciparum PE=3
SV=1
Length = 1956
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 34 WPKAQRLGHAFK-ELMDKYGEGELQMKEMADELMMDTTKDDEGLLPHIY 81
+ K + +G K ELM KY + EL K +ELM T K+ G+ +IY
Sbjct: 688 YSKNELMGKYSKNELMGKYSKNELMGKYSKNELMGKTIKNQVGVDTNIY 736
>sp|B5RL36|MUTL_BORDL DNA mismatch repair protein MutL OS=Borrelia duttonii (strain Ly)
GN=mutL PE=3 SV=1
Length = 611
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 74 EGLLPHIYPPETESHLSSIFIDTERPLGRYGTRSTSS------------LYVKSNGEVYF 121
EG +P Y P + H+ IFI T + + + ++ L V++ E+YF
Sbjct: 395 EGQIPQKYKPSFKQHIQKIFIKTSKMPNNFQKSTQTNEFKYMGQLFSEFLIVENANEIYF 454
Query: 122 YERH 125
++H
Sbjct: 455 IDQH 458
>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1
Length = 1140
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 12 KSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTK 71
+ + ++ G V+T L K+ L A EL + E EL K++ +E T K
Sbjct: 978 RELCIKLDSGKDVMTQQL----NSKSLELERAVAELENVKSESELLKKQLTNE--RQTIK 1031
Query: 72 DDEGLLPHIYPPETESHLSSIFIDTE 97
+ E LL E +SHL+S DTE
Sbjct: 1032 NLESLLATNRDKEFQSHLTSHEKDTE 1057
>sp|Q8Y065|SYE_RALSO Glutamate--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=gltX PE=3 SV=2
Length = 465
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 10 GGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYG 52
+ + EV PGI L + L P K + +G AFKE++ +G
Sbjct: 382 AAQHLTDEVRPGIMALADKLGTLPEWKREAIGAAFKEVLGAHG 424
>sp|Q1MKQ6|SYGB_RHIL3 Glycine--tRNA ligase beta subunit OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=glyS PE=3 SV=1
Length = 704
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 3 YVTNRSEGGKS---IATEVSPGIHVLTNALLDSPWPKAQRLGHA 43
YV S+ G++ I T+V PGI + D PWPK+ R G A
Sbjct: 109 YVAVISKPGRATEEIVTDVMPGI------IRDFPWPKSMRWGKA 146
>sp|P05529|MCBF_ECOLX Protein McbF OS=Escherichia coli GN=mcbF PE=3 SV=1
Length = 247
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 55 ELQMKEMADELMMDTTKDDEGLL--PHIYPPETESHLSSIFIDTERPLGRYGTRSTSSLY 112
++Q + M EL+ T D + + HI+ T + ++ ++ + RY S S +
Sbjct: 166 DIQYRMMLWELINKITADGKTVFFSTHIFDELTRDKIP-FYMLSKNSINRY---SDMSDF 221
Query: 113 VKSNGEVYFYERHLEKDLWKEQT 135
++SN E +RHL K LW+++T
Sbjct: 222 IQSNNETT-QKRHLLKKLWEQET 243
>sp|Q68WK6|ODP2_RICTY Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase complex OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=pdhC PE=3 SV=1
Length = 404
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 22 IHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGLLPHIY 81
I +L AL SP K L K+ DK GE+ + D+ M+ DEG+L I
Sbjct: 3 IKILMPAL--SPTMKDGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKII 60
Query: 82 PPETESHL 89
P+ ++
Sbjct: 61 IPQNSQNV 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,929,185
Number of Sequences: 539616
Number of extensions: 2151051
Number of successful extensions: 4314
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4299
Number of HSP's gapped (non-prelim): 35
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)