Query 032361
Match_columns 142
No_of_seqs 103 out of 462
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05742 NRDE: NRDE protein; 100.0 1.6E-35 3.4E-40 237.5 13.1 132 1-138 131-273 (273)
2 COG3332 Uncharacterized conser 100.0 3.5E-32 7.6E-37 210.3 10.6 118 1-128 129-250 (270)
3 KOG2342 Uncharacterized conser 99.9 1.3E-21 2.8E-26 154.9 11.5 128 13-142 143-279 (280)
4 PF09695 YtfJ_HI0045: Bacteria 70.1 3.6 7.7E-05 30.9 2.1 23 102-124 120-142 (160)
5 COG4337 Uncharacterized protei 55.4 22 0.00049 27.0 4.0 33 89-126 150-182 (206)
6 COG3054 Predicted transcriptio 55.0 10 0.00022 28.7 2.1 22 103-124 143-164 (184)
7 COG2052 Uncharacterized protei 54.6 9.9 0.00022 25.3 1.8 17 101-117 46-62 (89)
8 PF10055 DUF2292: Uncharacteri 39.0 48 0.001 18.9 2.8 20 102-125 14-33 (38)
9 PF08534 Redoxin: Redoxin; In 37.6 40 0.00088 23.4 3.0 21 106-126 114-134 (146)
10 PRK10344 DNA-binding transcrip 35.8 9.9 0.00021 26.0 -0.4 24 23-49 31-58 (92)
11 COG2077 Tpx Peroxiredoxin [Pos 30.1 62 0.0014 24.3 2.9 22 103-124 127-148 (158)
12 PRK09539 tRNA-splicing endonuc 29.7 76 0.0016 22.9 3.3 23 104-126 96-119 (124)
13 PF13778 DUF4174: Domain of un 28.4 45 0.00099 23.3 1.9 18 105-122 77-94 (118)
14 cd03017 PRX_BCP Peroxiredoxin 27.6 65 0.0014 22.0 2.7 17 108-124 111-127 (140)
15 cd03014 PRX_Atyp2cys Peroxired 25.7 87 0.0019 21.6 3.0 20 107-126 110-129 (143)
16 PF13905 Thioredoxin_8: Thiore 24.7 56 0.0012 20.8 1.8 13 107-119 83-95 (95)
17 TIGR01626 ytfJ_HI0045 conserve 23.6 65 0.0014 24.5 2.1 24 102-125 140-165 (184)
18 COG3193 GlcG Uncharacterized p 21.8 95 0.0021 22.9 2.6 19 106-124 29-47 (141)
19 PF15644 Tox-PL: Papain fold t 20.7 71 0.0015 21.8 1.7 19 104-122 85-103 (111)
20 COG3423 Nlp Predicted transcri 20.7 26 0.00056 23.3 -0.5 18 28-48 40-57 (82)
21 cd03018 PRX_AhpE_like Peroxire 20.4 1.2E+02 0.0026 20.9 2.9 23 104-126 111-133 (149)
22 PF00578 AhpC-TSA: AhpC/TSA fa 20.2 1.1E+02 0.0023 20.3 2.5 17 106-122 108-124 (124)
No 1
>PF05742 NRDE: NRDE protein; InterPro: IPR008551 This family is found in eukaryotes, prokaryotes and viruses and has no known function. P54797 from SWISSPROT has been found to be expressed during early embryogenesis in Mus sp [].
Probab=100.00 E-value=1.6e-35 Score=237.55 Aligned_cols=132 Identities=36% Similarity=0.662 Sum_probs=109.4
Q ss_pred CEEEeCCCCCCceeeEecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHh---hhcc-CCCCCCC
Q 032361 1 MVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADEL---MMDT-TKDDEGL 76 (142)
Q Consensus 1 ~~y~sNr~~~~~~~~~~l~~G~~glSN~~ld~pWpKv~~gk~~l~~~v~~~~~~~~~~~~l~~~l---l~~~-~~~~~~~ 76 (142)
++|+||+....+..+..+.+|+|||||+.||+|||||++||++|++++++. ...+.++++++| |++. ..+++.+
T Consensus 131 ~~~~sn~~~~~~~~~~~l~~g~hglSN~~ld~pWpKv~~gk~~l~~~~~~~--~~~~~~~l~~~l~~~L~~~~~~~~d~~ 208 (273)
T PF05742_consen 131 LYYYSNRGDKDPIVIEELPPGVHGLSNSLLDTPWPKVERGKQLLEEILEQS--NESSEEELIEELFELLSDDTQCAPDEQ 208 (273)
T ss_pred EEEEEeccCCCCceeEEccCCceEEcCCCCCCCccchhHHHHHHHHHHhcc--cCCCHHHHHHHHHHHhcCCCcCCChhH
Confidence 579999998644345689999999999999999999999999999999864 333556665544 5444 3456677
Q ss_pred CCCC-CCc-cccc--ccccceeeCCCCCCcccccEEEEEEEEeCCeEEEEEEEecC---CCceEEEEEE
Q 032361 77 LPHI-YPP-ETES--HLSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERHLEK---DLWKEQTVAY 138 (142)
Q Consensus 77 lP~t-~~~-~~e~--~lssifI~~p~~~~~YGTRs~TvilVd~~g~v~f~Er~~~~---~~w~~~~~~F 138 (142)
||++ ++. ++++ .||||||..+ .|||||||||+||++|+|+|+||+|.+ .+|++++|+|
T Consensus 209 l~~~g~~~~~~~~~~~lssifi~~~----~YGTRssTvIlvd~~g~v~f~Er~~~~~~~~~w~~~~f~f 273 (273)
T PF05742_consen 209 LPDTGIGLPELERPINLSSIFIRGP----YYGTRSSTVILVDRDGKVTFIERTLDDSGASEWEEQRFEF 273 (273)
T ss_pred ccccCCCcchhhhhcccccccccCC----CccCeeEEEEEEecCCCEEEEEEEecCCCCccceeeEEeC
Confidence 8888 554 7887 8999999988 999999999999999999999999953 3699999998
No 2
>COG3332 Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=3.5e-32 Score=210.29 Aligned_cols=118 Identities=36% Similarity=0.552 Sum_probs=103.3
Q ss_pred CEEEeCCCCCCceeeEecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCHHHHH---HHhhhccCCCCCCCC
Q 032361 1 MVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMA---DELMMDTTKDDEGLL 77 (142)
Q Consensus 1 ~~y~sNr~~~~~~~~~~l~~G~~glSN~~ld~pWpKv~~gk~~l~~~v~~~~~~~~~~~~l~---~~ll~~~~~~~~~~l 77 (142)
++|++||.... +.+.||+||||||.+|+|||||.+.+..|++++.+.. ..+.+.+| .+||++...+++.++
T Consensus 129 l~y~~nr~e~~----rkl~pgyy~lSNg~lds~W~Kv~~araal~~~l~e~~--~~d~e~ii~~~l~llad~~~~p~~ql 202 (270)
T COG3332 129 LWYYVNRSETP----RKLLPGYYGLSNGFLDSPWPKVKKARAALAELLAENI--EHDEEKIISSCLQLLADSSLAPDGQL 202 (270)
T ss_pred eeEeccccccc----cccCCceEEeccccccCccHHHHHHHHHHHHHHhccc--cCcHHHHHHHHHHHHhccccCCccCC
Confidence 58999999743 4799999999999999999999999999999997642 22444443 367778888899999
Q ss_pred CCC-CCcccccccccceeeCCCCCCcccccEEEEEEEEeCCeEEEEEEEecC
Q 032361 78 PHI-YPPETESHLSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERHLEK 128 (142)
Q Consensus 78 P~t-~~~~~e~~lssifI~~p~~~~~YGTRs~TvilVd~~g~v~f~Er~~~~ 128 (142)
||| ++.+||+.||+|||+.| .||||+||||+|.++|.++|+||.|..
T Consensus 203 Pdtgv~~ewerlls~ifI~g~----~YGTRastVl~v~~dgt~~fiEr~~~~ 250 (270)
T COG3332 203 PDTGVGVEWERLLSTIFIPGP----YYGTRASTVLRVSKDGTVTFIERVFGP 250 (270)
T ss_pred CcccccccHhhhheeeeecCC----CcccceeEEEEEecCCeeEEEEeecCc
Confidence 999 89999999999999999 999999999999999999999999953
No 3
>KOG2342 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.3e-21 Score=154.93 Aligned_cols=128 Identities=33% Similarity=0.463 Sum_probs=98.5
Q ss_pred eeeEecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHhhhccCCCCCCCCCCCC-C-----cccc
Q 032361 13 SIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGLLPHIY-P-----PETE 86 (142)
Q Consensus 13 ~~~~~l~~G~~glSN~~ld~pWpKv~~gk~~l~~~v~~~~~~~~~~~~l~~~ll~~~~~~~~~~lP~t~-~-----~~~e 86 (142)
++++.+.+|+|.+||+..-.||.|+.-|++.|+..+... .+.+.+.+..+++.-...-..+..+|++ . +..-
T Consensus 143 v~v~~~~~~~hv~Sn~~p~~~~~ks~~g~~~L~~~~l~~--~~~~ve~i~~~~~~~a~~~a~~~m~d~v~~~~~~~~~~~ 220 (280)
T KOG2342|consen 143 VEVEPVGDGVHVLSNSPPYDPWLKSEVGRRDLRELRLFT--DEQSVEQINESLFEPAKKIAEEFMYDTVQAQDGNVEIYV 220 (280)
T ss_pred EEEEecCCeeEEecCCCCCccccchhHHHHHHHHHHhcc--hhhHHHHHhhhhhhhhhhhhhhcCchhhhhhcCCCcccc
Confidence 446778999999999999999999999999999998653 2235566666666533222223344551 1 2334
Q ss_pred cccccceeeCCC-CCCcccccEEEEEEEEeCCeEEEEEEEec--CCCceEEEEEEEeCC
Q 032361 87 SHLSSIFIDTER-PLGRYGTRSTSSLYVKSNGEVYFYERHLE--KDLWKEQTVAYQIEK 142 (142)
Q Consensus 87 ~~lssifI~~p~-~~~~YGTRs~TvilVd~~g~v~f~Er~~~--~~~w~~~~~~F~l~~ 142 (142)
.+||+||++.|. +.+.|||||+|+|+|+++|+|+|+||+|. ++.|.++.|.|.|..
T Consensus 221 ~plssif~~d~~~~t~~YGTRs~talvVk~t~eV~f~ER~le~~~~~W~~~~f~F~i~~ 279 (280)
T KOG2342|consen 221 PPLSSIFFVDPEIGTRRYGTRSTTALVVKRTGEVTFFERYLEPFNDTWHDHDFAFKIIL 279 (280)
T ss_pred ccccccceecCcccccccccceEEEEEEecCCeEEEEeehhhhhcCccccCceEEEEec
Confidence 789999998773 34589999999999999999999999995 489999999999863
No 4
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=70.05 E-value=3.6 Score=30.94 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.4
Q ss_pred cccccEEEEEEEEeCCeEEEEEE
Q 032361 102 RYGTRSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 102 ~YGTRs~TvilVd~~g~v~f~Er 124 (142)
.-+-.+++||++|++|+|.|+=.
T Consensus 120 ~L~~~~SaiiVlDK~G~V~F~k~ 142 (160)
T PF09695_consen 120 QLQEESSAIIVLDKQGKVQFVKE 142 (160)
T ss_pred cCCCCCceEEEEcCCccEEEEEC
Confidence 45678899999999999999743
No 5
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.38 E-value=22 Score=26.96 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=27.4
Q ss_pred cccceeeCCCCCCcccccEEEEEEEEeCCeEEEEEEEe
Q 032361 89 LSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 89 lssifI~~p~~~~~YGTRs~TvilVd~~g~v~f~Er~~ 126 (142)
-.+|||.. +-.|.+--|+++|++|+++-+.+++
T Consensus 150 NAAi~I~G-----d~AtTtGNV~itdk~G~~TtVDKtW 182 (206)
T COG4337 150 NAAIYIDG-----DLATTTGNVFITDKKGQETTVDKTW 182 (206)
T ss_pred ceeEEEec-----cccceeccEEEEcCCCceEEeecee
Confidence 35777754 4578888899999999999999988
No 6
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=55.02 E-value=10 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.3
Q ss_pred ccccEEEEEEEEeCCeEEEEEE
Q 032361 103 YGTRSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 103 YGTRs~TvilVd~~g~v~f~Er 124 (142)
---.+|.||+.|++|+|.|+-.
T Consensus 143 L~e~~SaivVlDk~G~Vkfvke 164 (184)
T COG3054 143 LKEESSAVVVLDKDGRVKFVKE 164 (184)
T ss_pred cccccceEEEEcCCCcEEEEec
Confidence 3346899999999999999854
No 7
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.56 E-value=9.9 Score=25.28 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=15.1
Q ss_pred CcccccEEEEEEEEeCC
Q 032361 101 GRYGTRSTSSLYVKSNG 117 (142)
Q Consensus 101 ~~YGTRs~TvilVd~~g 117 (142)
+.||-||..||+.|.+.
T Consensus 46 ATYGRrTRavii~DS~h 62 (89)
T COG2052 46 ATYGRRTRAVIITDSDH 62 (89)
T ss_pred cccCceeeEEEEecCCc
Confidence 38999999999999884
No 8
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.03 E-value=48 Score=18.89 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.7
Q ss_pred cccccEEEEEEEEeCCeEEEEEEE
Q 032361 102 RYGTRSTSSLYVKSNGEVYFYERH 125 (142)
Q Consensus 102 ~YGTRs~TvilVd~~g~v~f~Er~ 125 (142)
.|| +|.++=+||++.-+||+
T Consensus 14 ~yG----sV~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 14 RYG----SVTIIIQDGRVVQIEKT 33 (38)
T ss_pred Ccc----eEEEEEECCEEEEEEhh
Confidence 677 47778899999999984
No 9
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=37.56 E-value=40 Score=23.41 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.8
Q ss_pred cEEEEEEEEeCCeEEEEEEEe
Q 032361 106 RSTSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 106 Rs~TvilVd~~g~v~f~Er~~ 126 (142)
+.-+.++||++|+|.+...-.
T Consensus 114 ~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 114 GIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp SSSEEEEEETTSBEEEEEESS
T ss_pred eecEEEEEECCCEEEEEEeCC
Confidence 566899999999999988744
No 10
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=35.83 E-value=9.9 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=15.9
Q ss_pred EEecCCC----CCCCCHHHHHHHHHHHHHHH
Q 032361 23 HVLTNAL----LDSPWPKAQRLGHAFKELMD 49 (142)
Q Consensus 23 ~glSN~~----ld~pWpKv~~gk~~l~~~v~ 49 (142)
+|||++. |+.||||.+ +.+.+.|.
T Consensus 31 ~Gls~~TL~nAL~rp~PKgE---riIA~aLG 58 (92)
T PRK10344 31 NGLSSSTLANALSRPWPKGE---MIIAKALG 58 (92)
T ss_pred cCCChHHHHHHHcCCCchHH---HHHHHHHC
Confidence 6777654 568999954 45555553
No 11
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.07 E-value=62 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred ccccEEEEEEEEeCCeEEEEEE
Q 032361 103 YGTRSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 103 YGTRs~TvilVd~~g~v~f~Er 124 (142)
=|=-+.+|+++|.+|+|.|.|-
T Consensus 127 ~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 127 AGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred cCeeeeEEEEEcCCCcEEEEEc
Confidence 4677899999999999999985
No 12
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=29.70 E-value=76 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.3
Q ss_pred cccEEEEEE-EEeCCeEEEEEEEe
Q 032361 104 GTRSTSSLY-VKSNGEVYFYERHL 126 (142)
Q Consensus 104 GTRs~Tvil-Vd~~g~v~f~Er~~ 126 (142)
+.|-+.||. ||.+|.++|+|-.+
T Consensus 96 svrK~lVLAVVD~egdVTYY~v~~ 119 (124)
T PRK09539 96 SMNLELYLAIVDKYGDVTYYTLSE 119 (124)
T ss_pred hccceeEEEEEcCCCcEEEEEEEE
Confidence 678888887 89999999999754
No 13
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=28.35 E-value=45 Score=23.26 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.7
Q ss_pred ccEEEEEEEEeCCeEEEE
Q 032361 105 TRSTSSLYVKSNGEVYFY 122 (142)
Q Consensus 105 TRs~TvilVd~~g~v~f~ 122 (142)
.+..++|||++||.+...
T Consensus 77 ~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred CCceEEEEEeCCCcEEEe
Confidence 556999999999977654
No 14
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.62 E-value=65 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=14.4
Q ss_pred EEEEEEEeCCeEEEEEE
Q 032361 108 TSSLYVKSNGEVYFYER 124 (142)
Q Consensus 108 ~TvilVd~~g~v~f~Er 124 (142)
.++++||++|++....-
T Consensus 111 p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 111 RSTFLIDPDGKIVKVWR 127 (140)
T ss_pred eeEEEECCCCEEEEEEe
Confidence 47899999999988765
No 15
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=25.69 E-value=87 Score=21.62 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.6
Q ss_pred EEEEEEEEeCCeEEEEEEEe
Q 032361 107 STSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 107 s~TvilVd~~g~v~f~Er~~ 126 (142)
..+.++||++|++.+.....
T Consensus 110 ~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 110 ARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ceEEEEEcCCCeEEEEEECC
Confidence 35788999999999998854
No 16
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.72 E-value=56 Score=20.80 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=10.8
Q ss_pred EEEEEEEEeCCeE
Q 032361 107 STSSLYVKSNGEV 119 (142)
Q Consensus 107 s~TvilVd~~g~v 119 (142)
.-+++++|++|+|
T Consensus 83 iP~~~lld~~G~I 95 (95)
T PF13905_consen 83 IPTLVLLDPDGKI 95 (95)
T ss_dssp SSEEEEEETTSBE
T ss_pred CCEEEEECCCCCC
Confidence 4589999999976
No 17
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=23.59 E-value=65 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=19.2
Q ss_pred cccccE--EEEEEEEeCCeEEEEEEE
Q 032361 102 RYGTRS--TSSLYVKSNGEVYFYERH 125 (142)
Q Consensus 102 ~YGTRs--~TvilVd~~g~v~f~Er~ 125 (142)
.||.+. +|+++||++|++.+.-.-
T Consensus 140 ~~gv~~~P~T~fVIDk~GkVv~~~~G 165 (184)
T TIGR01626 140 AWQLNSEDSAIIVLDKTGKVKFVKEG 165 (184)
T ss_pred hcCCCCCCceEEEECCCCcEEEEEeC
Confidence 688876 466899999999987663
No 18
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=21.81 E-value=95 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.9
Q ss_pred cEEEEEEEEeCCeEEEEEE
Q 032361 106 RSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 106 Rs~TvilVd~~g~v~f~Er 124 (142)
..-||-+||..|++..++|
T Consensus 29 ~~VtvaVVD~~G~~~a~~R 47 (141)
T COG3193 29 VPVTVAVVDAGGHLVALER 47 (141)
T ss_pred CceEEEEECCCCCEEEEEe
Confidence 3468999999999999999
No 19
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=20.72 E-value=71 Score=21.83 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.6
Q ss_pred cccEEEEEEEEeCCeEEEE
Q 032361 104 GTRSTSSLYVKSNGEVYFY 122 (142)
Q Consensus 104 GTRs~TvilVd~~g~v~f~ 122 (142)
|+..|++.+|..+|.+.|+
T Consensus 85 g~~gHa~nvv~~~G~i~~~ 103 (111)
T PF15644_consen 85 GGPGHAFNVVNQNGKIVFL 103 (111)
T ss_dssp ---TTEEEEEEE-SSEEEE
T ss_pred cccceEEEEEeCCCeEEEE
Confidence 4448999999999998886
No 20
>COG3423 Nlp Predicted transcriptional regulator [Transcription]
Probab=20.69 E-value=26 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.861 Sum_probs=11.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 032361 28 ALLDSPWPKAQRLGHAFKELM 48 (142)
Q Consensus 28 ~~ld~pWpKv~~gk~~l~~~v 48 (142)
..|+.||||-+ +.+.+.+
T Consensus 40 n~L~rp~pkgE---riIA~al 57 (82)
T COG3423 40 NALDRPWPKGE---RIIADAL 57 (82)
T ss_pred HHHcCCCchHH---HHHHHHh
Confidence 35788999954 4444444
No 21
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=20.36 E-value=1.2e+02 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=17.2
Q ss_pred cccEEEEEEEEeCCeEEEEEEEe
Q 032361 104 GTRSTSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 104 GTRs~TvilVd~~g~v~f~Er~~ 126 (142)
|.-..+.++||++|++.+.....
T Consensus 111 ~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 111 GVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred CCccceEEEECCCCEEEEEEecC
Confidence 44455789999999988876643
No 22
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.17 E-value=1.1e+02 Score=20.28 Aligned_cols=17 Identities=6% Similarity=0.348 Sum_probs=14.0
Q ss_pred cEEEEEEEEeCCeEEEE
Q 032361 106 RSTSSLYVKSNGEVYFY 122 (142)
Q Consensus 106 Rs~TvilVd~~g~v~f~ 122 (142)
...++++||++|++.+.
T Consensus 108 ~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 108 ALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp ESEEEEEEETTSBEEEE
T ss_pred eEeEEEEECCCCEEEeC
Confidence 45689999999999863
Done!