Query 032361
Match_columns 142
No_of_seqs 103 out of 462
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0m_A Uncharacterized protein 52.5 21 0.00073 23.8 4.3 71 32-117 12-85 (104)
2 3p7x_A Probable thiol peroxida 37.3 20 0.00069 24.4 2.4 20 107-126 129-148 (166)
3 2jsy_A Probable thiol peroxida 26.8 43 0.0015 22.4 2.7 17 108-124 129-145 (167)
4 1xvq_A Thiol peroxidase; thior 25.7 39 0.0013 23.1 2.3 21 104-124 126-146 (175)
5 4g2e_A Peroxiredoxin; redox pr 25.4 52 0.0018 22.2 2.9 19 108-126 120-138 (157)
6 4hi4_A Aerotaxis transducer AE 24.1 47 0.0016 20.7 2.3 17 108-124 16-32 (121)
7 4gqc_A Thiol peroxidase, perox 23.9 51 0.0017 22.6 2.6 17 109-125 123-139 (164)
8 1xzo_A BSSCO, hypothetical pro 23.8 46 0.0016 22.2 2.3 23 102-124 130-153 (174)
9 1n8j_A AHPC, alkyl hydroperoxi 23.7 58 0.002 22.6 2.9 19 107-125 118-136 (186)
10 3gkn_A Bacterioferritin comigr 23.0 48 0.0017 22.0 2.3 17 107-123 125-141 (163)
11 1q2f_A PNC27; P53 protein, MDM 22.7 10 0.00034 20.2 -1.0 10 31-40 23-32 (32)
12 3a0s_A Sensor protein; PAS-fol 21.8 59 0.002 17.8 2.3 17 109-125 4-20 (96)
13 2yzh_A Probable thiol peroxida 20.6 68 0.0023 21.6 2.7 22 103-124 129-150 (171)
14 1psq_A Probable thiol peroxida 20.4 64 0.0022 21.6 2.5 18 107-124 126-143 (163)
15 2rli_A SCO2 protein homolog, m 20.0 62 0.0021 21.5 2.4 14 109-122 132-145 (171)
No 1
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=52.50 E-value=21 Score=23.81 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCC-CCCH--HHHHHHhhhccCCCCCCCCCCCCCcccccccccceeeCCCCCCcccccEE
Q 032361 32 SPWPKAQRLGHAFKELMDKYGEG-ELQM--KEMADELMMDTTKDDEGLLPHIYPPETESHLSSIFIDTERPLGRYGTRST 108 (142)
Q Consensus 32 ~pWpKv~~gk~~l~~~v~~~~~~-~~~~--~~l~~~ll~~~~~~~~~~lP~t~~~~~e~~lssifI~~p~~~~~YGTRs~ 108 (142)
..|+........|.+++.++... .++. ...+.+||. ..|+. ....-.-+..|-|... .+||||=
T Consensus 12 ~~F~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~--------~HP~~-~~KiG~Gi~~i~V~~h----~~~srCF 78 (104)
T 2k0m_A 12 HEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALK--------RHPDA-TSKIGPGVRNFEVRSA----DYGTQCF 78 (104)
T ss_dssp EEESSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHH--------TSTTH-HHHHTTCEEEEEEEES----SSSCEEE
T ss_pred EecCCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH--------hCCcH-HHhcCCCcceEEEecC----CCCCcEE
Confidence 35888889999999999875332 2233 234555664 13432 0001112567888766 7899994
Q ss_pred EEEEEEeCC
Q 032361 109 SSLYVKSNG 117 (142)
Q Consensus 109 TvilVd~~g 117 (142)
- +|..||
T Consensus 79 f--vvR~DG 85 (104)
T 2k0m_A 79 W--ILRTDG 85 (104)
T ss_dssp E--EEETTS
T ss_pred E--EEEeCC
Confidence 4 456666
No 2
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=37.30 E-value=20 Score=24.39 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=16.6
Q ss_pred EEEEEEEEeCCeEEEEEEEe
Q 032361 107 STSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 107 s~TvilVd~~g~v~f~Er~~ 126 (142)
.-++++||++|++.+.....
T Consensus 129 ~p~~~liD~~G~i~~~~~~~ 148 (166)
T 3p7x_A 129 ARAVFVLDADNKVVYKEIVS 148 (166)
T ss_dssp CCEEEEECTTCBEEEEEECS
T ss_pred eeEEEEECCCCeEEEEEEcC
Confidence 56789999999999987643
No 3
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=26.85 E-value=43 Score=22.43 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.7
Q ss_pred EEEEEEEeCCeEEEEEE
Q 032361 108 TSSLYVKSNGEVYFYER 124 (142)
Q Consensus 108 ~TvilVd~~g~v~f~Er 124 (142)
-++++||++|++.+...
T Consensus 129 p~~~lid~~G~i~~~~~ 145 (167)
T 2jsy_A 129 RSVFVLDENGKVVYAEY 145 (167)
T ss_dssp CEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCCcEEEEEe
Confidence 68999999999987765
No 4
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=25.70 E-value=39 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.0
Q ss_pred cccEEEEEEEEeCCeEEEEEE
Q 032361 104 GTRSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 104 GTRs~TvilVd~~g~v~f~Er 124 (142)
|--.-+.++||++|++.+...
T Consensus 126 g~~~p~~~lid~~G~I~~~~~ 146 (175)
T 1xvq_A 126 GLLARAIVVIGADGNVAYTEL 146 (175)
T ss_dssp TSBCSEEEEECTTSBEEEEEE
T ss_pred CcccceEEEECCCCeEEEEEE
Confidence 333357999999999988775
No 5
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=25.42 E-value=52 Score=22.20 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=15.3
Q ss_pred EEEEEEEeCCeEEEEEEEe
Q 032361 108 TSSLYVKSNGEVYFYERHL 126 (142)
Q Consensus 108 ~TvilVd~~g~v~f~Er~~ 126 (142)
.|+.+||++|++.+....-
T Consensus 120 p~tflID~~G~I~~~~~~~ 138 (157)
T 4g2e_A 120 RAVFVIDKEGKVRYKWVSD 138 (157)
T ss_dssp EEEEEECTTSBEEEEEEES
T ss_pred eeEEEECCCCEEEEEEECC
Confidence 3578899999999887643
No 6
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=24.09 E-value=47 Score=20.65 Aligned_cols=17 Identities=6% Similarity=0.309 Sum_probs=13.7
Q ss_pred EEEEEEEeCCeEEEEEE
Q 032361 108 TSSLYVKSNGEVYFYER 124 (142)
Q Consensus 108 ~TvilVd~~g~v~f~Er 124 (142)
..|+++|.+|++.++=+
T Consensus 16 ~gviv~D~~g~I~~~N~ 32 (121)
T 4hi4_A 16 ANVMIADNDLNIIYMNR 32 (121)
T ss_dssp SEEEEEETTCBEEEECH
T ss_pred ccEEEEcCCCeEEEecH
Confidence 35899999999988644
No 7
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=23.89 E-value=51 Score=22.56 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred EEEEEEeCCeEEEEEEE
Q 032361 109 SSLYVKSNGEVYFYERH 125 (142)
Q Consensus 109 TvilVd~~g~v~f~Er~ 125 (142)
++.+||++|++.+.+..
T Consensus 123 ~tflID~~G~I~~~~~~ 139 (164)
T 4gqc_A 123 AVFIVKPDGTVAYKWVT 139 (164)
T ss_dssp EEEEECTTSBEEEEEEC
T ss_pred EEEEECCCCEEEEEEEe
Confidence 56889999999988764
No 8
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=23.82 E-value=46 Score=22.24 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=16.9
Q ss_pred ccccc-EEEEEEEEeCCeEEEEEE
Q 032361 102 RYGTR-STSSLYVKSNGEVYFYER 124 (142)
Q Consensus 102 ~YGTR-s~TvilVd~~g~v~f~Er 124 (142)
.||.. .-|+++||++|++...-.
T Consensus 130 ~~~~~~~p~~~lid~~G~i~~~~~ 153 (174)
T 1xzo_A 130 EDQVIHQSSFYLVGPDGKVLKDYN 153 (174)
T ss_dssp CCSCCSCCEEEEECTTSEEEEEEE
T ss_pred CCeeeeeeEEEEECCCCeEEEEEc
Confidence 45543 447899999999887654
No 9
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=23.69 E-value=58 Score=22.64 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred EEEEEEEEeCCeEEEEEEE
Q 032361 107 STSSLYVKSNGEVYFYERH 125 (142)
Q Consensus 107 s~TvilVd~~g~v~f~Er~ 125 (142)
.-++++||++|++.+....
T Consensus 118 ~p~~~lID~~G~i~~~~~~ 136 (186)
T 1n8j_A 118 DRATFVVDPQGIIQAIEVT 136 (186)
T ss_dssp CEEEEEECTTSBEEEEEEE
T ss_pred eeEEEEECCCCeEEEEEec
Confidence 4688999999999887653
No 10
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=23.00 E-value=48 Score=22.00 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.5
Q ss_pred EEEEEEEEeCCeEEEEE
Q 032361 107 STSSLYVKSNGEVYFYE 123 (142)
Q Consensus 107 s~TvilVd~~g~v~f~E 123 (142)
.-++++||++|++.+.-
T Consensus 125 ~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 125 ERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CCEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCCeEEEEE
Confidence 56889999999998765
No 11
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=22.69 E-value=10 Score=20.16 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.2
Q ss_pred CCCCHHHHHH
Q 032361 31 DSPWPKAQRL 40 (142)
Q Consensus 31 d~pWpKv~~g 40 (142)
++-|.||++|
T Consensus 23 ~~~W~~~~~~ 32 (32)
T 1q2f_A 23 NQFWVKVQRG 32 (32)
T ss_dssp TTHHHHHHCC
T ss_pred CchHHHHhcc
Confidence 3468998875
No 12
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=21.82 E-value=59 Score=17.76 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=13.2
Q ss_pred EEEEEEeCCeEEEEEEE
Q 032361 109 SSLYVKSNGEVYFYERH 125 (142)
Q Consensus 109 TvilVd~~g~v~f~Er~ 125 (142)
.|+++|.+|++.++=+.
T Consensus 4 ~i~~~d~~g~i~~~N~~ 20 (96)
T 3a0s_A 4 AIITLSKDGRITEWNKK 20 (96)
T ss_dssp EEEEEETTSBEEEECHH
T ss_pred eEEEEcCCCCEeehhHH
Confidence 57889999998876443
No 13
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=20.57 E-value=68 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=16.8
Q ss_pred ccccEEEEEEEEeCCeEEEEEE
Q 032361 103 YGTRSTSSLYVKSNGEVYFYER 124 (142)
Q Consensus 103 YGTRs~TvilVd~~g~v~f~Er 124 (142)
+|--.-++++||++|++.+...
T Consensus 129 ~g~~~p~~~liD~~G~i~~~~~ 150 (171)
T 2yzh_A 129 KGILARAVFIIDKEGKVAYVQL 150 (171)
T ss_dssp TTSBCCEEEEECTTSBEEEEEE
T ss_pred CCceeeEEEEEcCCCeEEEEEe
Confidence 3433567999999999988775
No 14
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=20.40 E-value=64 Score=21.63 Aligned_cols=18 Identities=6% Similarity=0.285 Sum_probs=15.0
Q ss_pred EEEEEEEEeCCeEEEEEE
Q 032361 107 STSSLYVKSNGEVYFYER 124 (142)
Q Consensus 107 s~TvilVd~~g~v~f~Er 124 (142)
.-+.++||++|++.+...
T Consensus 126 ~p~~~liD~~G~i~~~~~ 143 (163)
T 1psq_A 126 ARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp CCEEEEECTTCBEEEEEE
T ss_pred EEEEEEEcCCCeEEEEEe
Confidence 358899999999988765
No 15
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=20.00 E-value=62 Score=21.48 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=12.4
Q ss_pred EEEEEEeCCeEEEE
Q 032361 109 SSLYVKSNGEVYFY 122 (142)
Q Consensus 109 TvilVd~~g~v~f~ 122 (142)
++++||++|++...
T Consensus 132 ~~~lid~~G~i~~~ 145 (171)
T 2rli_A 132 AIYLLNPDGLFTDY 145 (171)
T ss_dssp EEEEECTTSCEEEE
T ss_pred eEEEECCCCeEEEE
Confidence 78999999998775
Done!