BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032362
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GWS|A Chain A, Hexadecaheme High Molecular Weight Cytochrome Hmc From
           Desulfovibrio Vulgaris Hildenborough
 pdb|2CVC|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
           From Desulfovibrio Vulgaris (Hildenborough)
          Length = 545

 Score = 28.9 bits (63), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 60  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQV 100
           T + Q  C GCH  +   +  +  QC  CH      +A QV
Sbjct: 355 TRVQQPTCAGCHGFIKPTK--SDAQCGVCHVAAPGFDAKQV 393


>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
           Hildenborough: Structure Of The 16-Heme Cytochrome C
           Hmca At 2.5 A Resolution And A View Of Its Role In
           Transmembrane Electron Transfer
 pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
           Hildenborough: Structure Of The 16-Heme Cytochrome C
           Hmca At 2.5 A Resolution And A View Of Its Role In
           Transmembrane Electron Transfer
 pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
           Hildenborough: Structure Of The 16-Heme Cytochrome C
           Hmca At 2.5 A Resolution And A View Of Its Role In
           Transmembrane Electron Transfer
 pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
           Hildenborough: Structure Of The 16-Heme Cytochrome C
           Hmca At 2.5 A Resolution And A View Of Its Role In
           Transmembrane Electron Transfer
          Length = 514

 Score = 28.9 bits (63), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 60  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQV 100
           T + Q  C GCH  +   +  +  QC  CH      +A QV
Sbjct: 324 TRVQQPTCAGCHGFIKPTK--SDAQCGVCHVAAPGFDAKQV 362


>pdb|3H34|A Chain A, Ppce, A Cytochrome C7 From Geobacter Sulfurreducens
          Length = 70

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 59 GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHT 90
          G + A   C GCH     +RGA   +C  CHT
Sbjct: 42 GKDYAHKTCKGCHE----VRGAGPTKCKLCHT 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.136    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,579,962
Number of Sequences: 62578
Number of extensions: 65449
Number of successful extensions: 148
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 13
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)